ID:

dpe_210

 Coordinate:

scaffold_4:2567126-2567238 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.6 -22.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGATCATCAACTAAAATTCATCCTTTATTATTTGTAGGCTAGTGATTTCACAGTACGTTTGTTTTCTTCTACATATTGTCAGATCTCTGTCCTCAAAATAATCAAGGCTTTCAGCAAAAACATCGGTAAATTCACAAAAATGTATAAATACATATGTACATATGAATGTGAAG

***********************************************************..((((.(((((((..(((.(((.(((((.((((((.((............)).)))))).))))).))).)))..))))))).)))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 M021

embryo

 V042

embryo

 V111

male body		 V050

head

 V057

head
.................................................................................................................TATTGTCAGATCTCTGTCCT................................................................................ 20 0 1 460.00 460 34 421 2 3 0 0
..........................................................................TAGGCTAGTGATTTCACAGTAC..................................................................................................................... 22 0 1 167.00 167 102 3 36 23 2 1
.................................................................................................................TATTGTCAGATCTCTGTCCTCA.............................................................................. 22 0 1 149.00 149 134 7 7 1 0 0
..........................................................................TAGGCTAGTGATTTCACAGT....................................................................................................................... 20 0 1 139.00 139 49 5 70 15 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTC............................................................................... 21 0 1 110.00 110 51 52 6 1 0 0
................................................................................................................ATATTGTCAGATCTCTGTCCT................................................................................ 21 0 1 106.00 106 13 93 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTA...................................................................................................................... 21 0 1 69.00 69 51 1 7 8 1 1
...........................................................................AGGCTAGTGATTTCACAGTACG.................................................................................................................... 22 0 1 48.00 48 46 0 2 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCAA............................................................................. 23 0 1 37.00 37 34 1 2 0 0 0
..................................................................................................................ATTGTCAGATCTCTGTCCTCA.............................................................................. 21 0 1 34.00 34 28 6 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTAA..................................................................................................................... 22 1 1 27.00 27 22 0 2 3 0 0
..................................................................................................................ATTGTCAGATCTCTGTCCTC............................................................................... 20 0 1 22.00 22 12 8 1 0 1 0
..........................................................................TAGGCTAGTGATTTCACAGTACA.................................................................................................................... 23 1 1 21.00 21 14 0 6 0 0 1
.................................................................................................................TATTGTCAGATCTCTGTCCC................................................................................ 20 1 1 18.00 18 0 18 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAG........................................................................................................................ 19 0 1 15.00 15 7 0 3 5 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCG................................................................................ 20 1 1 15.00 15 0 15 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAA............................................................................ 24 0 1 14.00 14 8 3 3 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTAC..................................................................................................................... 21 0 1 13.00 13 12 0 0 1 0 0
..................................................................................................................ATTGTCAGATCTCTGTCCTCAA............................................................................. 22 0 1 13.00 13 7 6 0 0 0 0
..................................................................................................................ATTGTCAGATCTCTGTCCT................................................................................ 19 0 1 12.00 12 2 10 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTAAA.................................................................................................................... 23 2 1 11.00 11 11 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCC................................................................................. 19 0 1 9.00 9 3 6 0 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTACGA................................................................................................................... 23 1 1 9.00 9 9 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAAA........................................................................... 25 0 1 8.00 8 6 2 0 0 0 0
..........................................................................TAGGCTAGGGATTTCACAGTAC..................................................................................................................... 22 1 1 8.00 8 8 0 0 0 0 0
..........................................................................TAGGCCAGTGATTTCACAGTAC..................................................................................................................... 22 1 1 7.00 7 0 0 6 1 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAAAA.......................................................................... 26 1 1 6.00 6 6 0 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTACG.................................................................................................................... 23 0 1 6.00 6 6 0 0 0 0 0
...................................................................................................................TTGTCAGATCTCTGTCCT................................................................................ 18 0 1 5.00 5 0 5 0 0 0 0
...................................................................................................................TTGTCAGATCTCTGTCCTCA.............................................................................. 20 0 1 5.00 5 4 0 1 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTACA.................................................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTT............................................................................... 21 1 1 4.00 4 3 0 0 1 0 0
...........................................................................AGGCTAGTGATTTCACAGT....................................................................................................................... 19 0 1 4.00 4 3 0 0 1 0 0
..........................................................................TAGGCTAGTGATTTCACAGTACC.................................................................................................................... 23 1 1 4.00 4 3 0 0 1 0 0
................................................................................................................ATATTGTCAGATCTCTGTC.................................................................................. 19 0 1 4.00 4 0 4 0 0 0 0
..................................................................................................................ATTGTCAGATCTCTGTCC................................................................................. 18 0 1 4.00 4 0 4 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTA............................................................................... 21 1 1 3.00 3 2 1 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACCGT....................................................................................................................... 20 1 1 3.00 3 0 0 2 1 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCAC............................................................................. 23 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................................ATTGTCAGGTCTCTGTCCTCAA............................................................................. 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTA...................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0
...........................................................................AGGCCAGTGATTTCACAGTACG.................................................................................................................... 22 1 1 3.00 3 0 0 3 0 0 0
.................................................................................................................TATTGTCGGATCTCTGTCCT................................................................................ 20 1 1 3.00 3 0 3 0 0 0 0
..................................................................................................................ATTGTCAGATCTCTGTCCTCAAAA........................................................................... 24 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................................TATTGTCAGATCCCTGTCCT................................................................................ 20 1 1 2.00 2 1 1 0 0 0 0
...................................................................................................................TTGTCAGATCTCTGTCCTC............................................................................... 19 0 1 2.00 2 1 1 0 0 0 0
..........................................................................TAGGCTAGAGATTTCACAGTAC..................................................................................................................... 22 1 1 2.00 2 1 0 1 0 0 0
.................................................................................................................TATTGTCAGATCACTGTCCT................................................................................ 20 1 1 2.00 2 0 2 0 0 0 0
................................................................................................................ATATTGTCAGATCTCTGTCC................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0
.................................................................................................................TATTCTCAGATCTCTGTCCTCACA............................................................................ 24 2 1 2.00 2 0 2 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCACA............................................................................ 24 1 1 2.00 2 0 1 1 0 0 0
.................................................................................................................TATTGTCATATCTCTGTCCTCA.............................................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................................ATTGTCAGGTCTCTGTCCTC............................................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..........................................................................TAGGCTAGGGATTTCACAGT....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................................ATTGTCAGATCTCTGTCCTCAAA............................................................................ 23 0 1 2.00 2 1 0 1 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCT................................................................................. 19 1 1 2.00 2 0 0 0 2 0 0
.................................................................................................................TATTGTCACATCTCTGTCCTCA.............................................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................GGGCTAGTGATTTCACAGTACG.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACGGTAC..................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..........................................................................TAGGCTAGTGATTTAACAGTAC..................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................................AGGCTAGTGATTTCACAGTAAA.................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGGGATTTCACAGTA...................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAAT....................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.................................................................................................................TATTGTCAGATCACTGTCCTC............................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTACAA................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCACATCTCTGTCCTC............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGTGATTTCCCAGTAC..................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTACC.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGGCAGATCTCTGTCCT................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTTTCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................ATTGTCAGATCCCTGTCCTCA.............................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCG.............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTCTCAGATCTCTGTCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGTCAGATCTCTGTCCTCAAA............................................................................ 25 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................TATTGCCAGATCTCTGTCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGTCAGATCTCTGTCCG................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGCCTAGTGATTTCACAGTAC..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGGGATTTCACAGTAAA.................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTATTGTCAGATCTCTGTCCTCAA............................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCCAGTGATTTCACAGT....................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................................TATTGTCAAATCTCTGTCCTCAA............................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................CTAGGCTAGTGATTTCACAGTA...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................CTAGGCTAGTGATTTCCCAGT....................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..........................................................................TAGGCTAGTGATTTCACGGT....................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................GGCTAGTGATTTCACAGTAC..................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGAGATTTCATAGTAC..................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................AGGCCAGTGATTTCTCAGTACG.................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...........................................................................AGGCTACTGATTTCACAGTACG.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCGCTGTCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................................TGTCAGATCTCTGTCCTCAA............................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGTGGTTTCACAGT....................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCAT............................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGCGGTTTCACAGTAC..................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTACCCC.................................................................................................................. 25 3 1 1.00 1 0 0 0 1 0 0
..................................................................................................................GTTGTCAGATCTCTGTCC................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGGGATTTCACAGTAG..................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCCGTCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTACGT................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
..........................................................................TAGGCTAGTGATTTCACAAAA...................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGTCAGATCTCTGTCCA................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGTCAGATCTCTGTCCTC............................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TATTGTCAGCTCTCTGTCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................ATTGTCAGATCTCTGTCCG................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGAGATTTCACAGTAA..................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTACGT................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
...................................................................................................................TTGTCAGATCTCTGTCCTCAAAA........................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCGCTGTCCTCAAT............................................................................ 24 2 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGTCGGATCTCTGTCCT................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................TTGTCAGACCTCTGTCCTCAA............................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTTTCAGATCTCTGTCCT................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCAA............................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................ATATTGTCAGATATCTGTCCG................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................GAGGCTAGTGATTTCACAG........................................................................................................................ 19 1 1 1.00 1 0 0 1 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTAA..................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................CTAGGCTAGTGATTTCACAG........................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTACGTAAA................................................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0
...........................................................................AGGCTAGTGATTTCACAGTCC..................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................TAGGCTAGAGATTTCACAGT....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGTCTAGTGATTTCACAGTAAA.................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGTCTAGTGATTTCACAGTAC..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAAATCTCTGTCCTCAAA............................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACATTAC..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACA......................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................ATTGTCAGATCTCAGTCCTCA.............................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAT............................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTT...................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................GGCTAGTGATTTCACAGTACG.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTTAGATCTCTGTCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTTGTGCTTTCACAGT....................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
...........................................................................AGGCTAGTAATTTCACAGTACG.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................AGGCTAGTGATTTCACATTACG.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGTGCTTTCACAGTA...................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...........................................................................AGGCTAGTGAGTTCACAGTACG.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGCCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCC.............................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................GTATTGTCAGATCTCTGTCCTCA.............................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGTCCTCT.............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTTTCCTCA.............................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTACCT................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0
............................................................................GGCTAGTGATTTCACAGTAA..................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGACCTCTGTCCT................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGAGATTTCACAGTACA.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................TATTCAGATCTCTGTCCTCA.............................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCCGATCTCTGTCCTC............................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTAAAA................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..........................................................................TAGGCTAGTGATTTCACAGTC...................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
.................................................................................................................TATTTTCAGATCTCCGTCCTCA.............................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TATTGTCAGATCTCTGGCCTCAAA............................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................ATATTGTCAGATCTCTGTCCTCA.............................................................................. 23 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................TATTGTCAGATCTCTATCCT................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................TAGGCTAGTGCTTTCACCGT....................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
..........................................................................TAGGATAGTGATTTCTCAGT....................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0
..........................................................................TAGGCTAGGGACTTCTCAGT....................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0
................................................................................................................TATTTGTCAGATCTCTGTCCT................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0

Anti-sense strand reads

ACATGTAAGGATGACTAAGCTAAATATTGACTTTCAAGACTCTAGTAGTTGATTTTAAGTAGGAAATAATAAACATCCGATCACTAAAGTGTCATGCAAACAAAAGAAGATGTATAACAGTCTAGAGACAGGAGTTTTATTAGTTCCGAAAGTCGTTTTTGTAGCCATTTAAGTGTTTTTACATATTTATGTATACATGTATACTTACACTTC

*****************************************************************..((((.(((((((..(((.(((.(((((.((((((.((............)).)))))).))))).))).)))..))))))).)))).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V050

head

 M021

embryo

 V057

head

 V042

embryo
...................................................................................................................AACAGTCTAGAGGCAGGT................................................................................ 18 2 5 0.20 1 1 0 0 0
................................................................................................................TATAACAGTCGAGGGGCAGGA................................................................................ 21 3 6 0.17 1 0 1 0 0
...............................................................................ATCACTGAAGTGGCGTGCA................................................................................................................... 19 3 9 0.11 1 0 0 1 0
................................................................................................................................CAGGAGATTTATTAGTTC................................................................... 18 1 10 0.10 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_4:2567076-2567288 + dpe_210 confident TGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGATCATCAACTAAAATTCATCCTTTATTATTTGTAGGCTAGTGATTTCACAGTACGTTTGTTTTCTTCTACATATTGTCAGATCTCTGTCCTCAAAATAATCAAGGCTTTCAGCAAAAACATCGGTAAATTCACAAAAATGTATAAATACATATGTACATATGAATGTGAAG
dp5 3:8680298-8680506 + dps-mir-2554 Known_mirbase TGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGATCATCAACTAAAATTCATCCTTTATTATTTGTAGGCCAGTGATTTCACAGTACGTTTGTTTTCTTCTACATATTGTCAGATCTCTGTCCTCAAAATATTCAAGGCTTTCAGCAAAAACATCGGTAAATTCACAAAAATGTATAAATACATA----CTTATGAATGTGAAG
droEug1 scf7180000409474:1490384-1490487 + AATATAT-------------------------------------------------------------------------------------------TTATTTTTCAAGTTATATTGCACACTTCCCGGCCTTTAAATGTCCAGTGTTTCGACCCTAAACATCTGTGAAATCATAAAATTATATAATTTCATAT------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGATCATCAACTAAAATTCATCCTTTATTATTTGTAGGCTAGTGATTTCACAGTACGTTTGTTTTCTTCTACATATTGTCAGATCTCTGTCCTCAAAATAATCAAGGCTTTCAGCAAAAACATCGGTAAATTCACAAAAATGTATAAATACATATGTACATATGAATGTGAAGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................TATTGTCAGATCTCTGTCCT................................................................................201460.00460421342003
..........................................................................TAGGCTAGTGATTTCACAGTAC.....................................................................................................................221167.001673102362123
.................................................................................................................TATTGTCAGATCTCTGTCCTCA..............................................................................221149.0014971347001
..........................................................................TAGGCTAGTGATTTCACAGT.......................................................................................................................201139.00139549700015
.................................................................................................................TATTGTCAGATCTCTGTCCTC...............................................................................211110.0011052516001
................................................................................................................ATATTGTCAGATCTCTGTCCT................................................................................211106.0010693130000
..........................................................................TAGGCTAGTGATTTCACAGTA......................................................................................................................21169.00691517118
...........................................................................AGGCTAGTGATTTCACAGTACG....................................................................................................................22148.00480462000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAA.............................................................................23137.00371342000
..................................................................................................................ATTGTCAGATCTCTGTCCTCA..............................................................................21134.00346280000
..........................................................................TAGGCTAGTGATTTCACAGTAA.....................................................................................................................22127.00270222003
..................................................................................................................ATTGTCAGATCTCTGTCCTC...............................................................................20122.00228121100
..........................................................................TAGGCTAGTGATTTCACAGTACA....................................................................................................................23121.00210146010
.................................................................................................................TATTGTCAGATCTCTGTCCC................................................................................20118.00181800000
..........................................................................TAGGCTAGTGATTTCACAG........................................................................................................................19115.0015073005
.................................................................................................................TATTGTCAGATCTCTGTCCG................................................................................20115.00151500000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAA............................................................................24114.0014383000
...........................................................................AGGCTAGTGATTTCACAGTAC.....................................................................................................................21113.00130120001
..................................................................................................................ATTGTCAGATCTCTGTCCTCAA.............................................................................22113.0013670000
..................................................................................................................ATTGTCAGATCTCTGTCCT................................................................................19112.00121020000
..........................................................................TAGGCTAGTGATTTCACAGTAAA....................................................................................................................23111.00110110000
.................................................................................................................TATTGTCAGATCTCTGTCC.................................................................................1919.009630000
...........................................................................AGGCTAGTGATTTCACAGTACGA...................................................................................................................2319.009090000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAAA...........................................................................2518.008260000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAAAA..........................................................................2616.006060000
..........................................................................TAGGCTAGTGATTTCACAGTACG....................................................................................................................2316.006060000
...................................................................................................................TTGTCAGATCTCTGTCCT................................................................................1815.005500000
...................................................................................................................TTGTCAGATCTCTGTCCTCA..............................................................................2015.005041000
...........................................................................AGGCTAGTGATTTCACAGTACA....................................................................................................................2215.005050000
.................................................................................................................TATTGTCAGATCTCTGTCCTT...............................................................................2114.004030001
...........................................................................AGGCTAGTGATTTCACAGT.......................................................................................................................1914.004030001
..........................................................................TAGGCTAGTGATTTCACAGTACC....................................................................................................................2314.004030001
................................................................................................................ATATTGTCAGATCTCTGTC..................................................................................1914.004400000
..................................................................................................................ATTGTCAGATCTCTGTCC.................................................................................1814.004400000
.................................................................................................................TATTGTCAGATCTCTGTCCTA...............................................................................2113.003120000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAC.............................................................................2313.003030000
...........................................................................AGGCTAGTGATTTCACAGTA......................................................................................................................2013.003030000
..................................................................................................................ATTGTCAGATCTCTGTCCTCAAAA...........................................................................2413.003030000
...................................................................................................................TTGTCAGATCTCTGTCCTC...............................................................................1912.002110000
................................................................................................................ATATTGTCAGATCTCTGTCC.................................................................................2012.002200000
..................................................................................................................ATTGTCAGATCTCTGTCCTCAAA............................................................................2312.002011000
.................................................................................................................TATTGTCAGATCTCTGTCT.................................................................................1912.002000002
...........................................................................AGGCTAGTGATTTCACAGTAAA....................................................................................................................2211.001010000
..........................................................................TAGGCTAGTGATTTCACAGTACAA...................................................................................................................2411.001010000
...........................................................................AGGCTAGTGATTTCACAGTACC....................................................................................................................2211.001010000
.................................................................................................................TATTGTCAGATCTCTGTCCTCG..............................................................................2211.001010000
................................................................................................................ATATTGTCAGATCTCTGTCCTCAAA............................................................................2511.001001000
................................................................................................................ATATTGTCAGATCTCTGTCCG................................................................................2111.001100000
............................................................................GGCTAGTGATTTCACAGTAC.....................................................................................................................2011.001010000
....................................................................................................................TGTCAGATCTCTGTCCTCAA.............................................................................2011.001010000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAT.............................................................................2311.001010000
..........................................................................TAGGCTAGTGATTTCACAGTACCCC..................................................................................................................2511.001000001
..........................................................................TAGGCTAGTGATTTCACAGTACGT...................................................................................................................2411.001001000
................................................................................................................ATATTGTCAGATCTCTGTCCA................................................................................2111.001010000
................................................................................................................ATATTGTCAGATCTCTGTCCTC...............................................................................2211.001100000
..................................................................................................................ATTGTCAGATCTCTGTCCG................................................................................1911.001100000
...........................................................................AGGCTAGTGATTTCACAGTACGT...................................................................................................................2311.001000001
...................................................................................................................TTGTCAGATCTCTGTCCTCAAAA...........................................................................2311.001010000
.................................................................................................................TATTGTCAGATCTCTGTCCAA...............................................................................2111.001010000
...........................................................................AGGCTAGTGATTTCACAGTAA.....................................................................................................................2111.001010000
...........................................................................AGGCTAGTGATTTCACAGTACGTAAA................................................................................................................2611.001010000
..........................................................................TAGGCTAGTGATTTCACA.........................................................................................................................1811.001010000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAT............................................................................2411.001100000
..........................................................................TAGGCTAGTGATTTCACAGTT......................................................................................................................2111.001010000
............................................................................GGCTAGTGATTTCACAGTACG....................................................................................................................2111.001010000
.................................................................................................................TATTGTCAGATCTCTGTCCTG...............................................................................2111.001010000
.................................................................................................................TATTGTCAGATCTCTGTCCTCC..............................................................................2211.001001000
.................................................................................................................TATTGTCAGATCTCTGTCCTCT..............................................................................2211.001010000
............................................................................GGCTAGTGATTTCACAGTAA.....................................................................................................................2011.001010000
..........................................................................TAGGCTAGTGATTTCACAGTAAAA...................................................................................................................2411.001010000
..........................................................................TAGGCTAGTGATTTCACAGTC......................................................................................................................2111.001000001
................................................................................................................ATATTGTCAGATCTCTGTCCTCA..............................................................................2311.001001000
dp5
TGTACATTCCTACTGATTCGATTTATAACTGAAAGTTCTGAGATCATCAACTAAAATTCATCCTTTATTATTTGTAGGCCAGTGATTTCACAGTACGTTTGTTTTCTTCTACATATTGTCAGATCTCTGTCCTCAAAATATTCAAGGCTTTCAGCAAAAACATCGGTAAATTCACAAAAATGTATAAATACATA----CTTATGAATGTGAAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................TATTGTCAGATCTCTGTCCTCA..............................................................................2213995.0039951214716238742348218510
..........................................................................TAGGCCAGTGATTTCACAGTAC.....................................................................................................................2213400.003400712841425782231763192831
...........................................................................AGGCCAGTGATTTCACAGTACG....................................................................................................................2211758.001758011542753241313017880
.................................................................................................................TATTGTCAGATCTCTGTCCTC...............................................................................2111441.0014412767756729830855220
.................................................................................................................TATTGTCAGATCTCTGTCCT................................................................................201994.0099415551734312522332130
..................................................................................................................ATTGTCAGATCTCTGTCCTCA..............................................................................211573.00573224420631282861
.................................................................................................................TATTGTCAGATCTCTGTCCTCAA.............................................................................231486.00486038324090043270
..........................................................................TAGGCCAGTGATTTCACAGTA......................................................................................................................211467.00467012622365119011481
..........................................................................TAGGCCAGTGATTTCACAGTACA....................................................................................................................231292.00292016641265022140
..........................................................................TAGGCCAGTGATTTCACAGTACG....................................................................................................................231217.002170106200331281280
..................................................................................................................ATTGTCAGATCTCTGTCCTC...............................................................................201212.002122103321241940
..................................................................................................................ATTGTCAGATCTCTGTCCTCAA.............................................................................221209.002090942030020900
.................................................................................................................TATTGTCAGATCTCTGTCCTCT..............................................................................221190.001909341100351370
.................................................................................................................TATTGTCAGATCTCTGTCC.................................................................................191174.001741740512722971
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAA............................................................................241169.001690147301001620
..........................................................................TAGGCCAGTGATTTCACAGT.......................................................................................................................201160.0016003540352720120
.................................................................................................................TATTGTCAGATCTCTGTCCTCC..............................................................................221158.00158451300001450
.................................................................................................................TATTGTCAGATCTCTGTCCTT...............................................................................211135.00135150100151760
...........................................................................AGGCCAGTGATTTCACAGTAC.....................................................................................................................211127.00127093776020120
..........................................................................TAGGCCAGTGATTTCACAGTAA.....................................................................................................................221112.0011203491165120350
.................................................................................................................TATTGTCAGATCTCTGTC..................................................................................181105.0010595000010090
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAAA...........................................................................251103.00103084202001500
.................................................................................................................TATTGTCAGATCTCTGTCT.................................................................................191102.00102102000300870
..................................................................................................................ATTGTCAGATCTCTGTCCT................................................................................19176.007676100000080
...................................................................................................................TTGTCAGATCTCTGTCCTCA..............................................................................20173.0073028102010410
............................................................................GGCCAGTGATTTCACAGTACG....................................................................................................................21170.007007000000000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAC.............................................................................23170.007005940000520
...........................................................................AGGCCAGTGATTTCACAGTACGA...................................................................................................................23166.006605910300030
.................................................................................................................TATTGTCAGATCTCTGTCCC................................................................................20159.0059841210000340
.................................................................................................................TATTGTCAGATCTCTGTCCTTT..............................................................................22157.005703010000530
...................................................................................................................TTGTCAGATCTCTGTCCTCAA.............................................................................21157.0057016000007340
..........................................................................TAGGCCAGTGATTTCACAGTACC....................................................................................................................23155.005537473360220
.................................................................................................................TATTGTCAGATCTCTGTCCTCCC.............................................................................23151.005112010130430
................................................................................................................ATATTGTCAGATCTCTGTCCT................................................................................21150.005053130100640
...........................................................................AGGCCAGTGATTTCACAGTACGT...................................................................................................................23147.0047026503011020
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAAAA..........................................................................26144.0044031000001300
..........................................................................TAGGCCAGTGATTTCACAGTACAA...................................................................................................................24144.004404000300100
..................................................................................................................ATTGTCAGATCTCTGTCCTCC..............................................................................21139.003900011010360
................................................................................................................ATATTGTCAGATCTCTGTCCTCA..............................................................................23135.003509201007160
.................................................................................................................TATTGTCAGATCTCTGTCCTA...............................................................................21131.003102600000320
..........................................................................TAGGCCAGTGATTTCACAG........................................................................................................................19130.003031500113070
..................................................................................................................ATTGTCAGATCTCTGTCCTCAAA............................................................................23129.002902900000000
..................................................................................................................ATTGTCAGATCTCTGTCCTCT..............................................................................21127.002716000010190
.................................................................................................................TATTGTCAGATCTCTGTCCTCAT.............................................................................23126.002605101104140
...........................................................................AGGCCAGTGATTTCACAGTA......................................................................................................................20124.002401300312050
.................................................................................................................TATTGTCAGATCTCTGTCCTCTT.............................................................................23123.002304000100180
................................................................................................................ATATTGTCAGATCTCTGTCCTC...............................................................................22120.002007001011100
.................................................................................................................TATTGTCAGATCTCTGTCCA................................................................................20118.00180920002320
.................................................................................................................TATTGTCAGATCTCTGTCCTCCCC............................................................................24117.001710000000160
.................................................................................................................TATTGTCAGATCTCTGTCA.................................................................................19117.00172600030060
..........................................................................TAGGCCAGTGATTTCACAGTAAA....................................................................................................................23117.001701010002040
...........................................................................AGGCCAGTGATTTCACAGTACA....................................................................................................................22116.001601500100000
..........................................................................TAGGCCAGTGATTTCACAGTACT....................................................................................................................23116.001601100030110
...................................................................................................................TTGTCAGATCTCTGTCCTC...............................................................................19115.00151800010050
.................................................................................................................TATTGTCAGATCTCTGTCCCT...............................................................................21115.00156001000080
.................................................................................................................TATTGTCAGATCTCTGTCCTTTT.............................................................................23114.001401000000130
...................................................................................................................TTGTCAGATCTCTGTCCTCAAA............................................................................22113.001301000000120
..........................................................................TAGGCCAGTGATTTCACAGTACGA...................................................................................................................24113.00130900300100
..................................................................................................................ATTGTCAGATCTCTGTCCTCAAAA...........................................................................24113.001301000000030
............................................................................GGCCAGTGATTTCACAGTAC.....................................................................................................................20112.001201200000000
.................................................................................................................TATTGTCAGATCTCTGTCCTCTTT............................................................................24112.001200000000120
.................................................................................................................TATTGTCAGATCTCTGTCCTCCT.............................................................................23112.001210000000110
.................................................................................................................TATTGTCAGATCTCTGTCG.................................................................................19112.001200000000120
..................................................................................................................ATTGTCAGATCTCTGTCCTCAT.............................................................................22111.00110300000350
..................................................................................................................ATTGTCAGATCTCTGTCCTCTT.............................................................................22110.001000000000100
..........................................................................TAGGCCAGTGATTTCACAGTACAAA..................................................................................................................25110.001001000000000
.................................................................................................................TATTGTCAGATCTCTGTCCTCTC.............................................................................2319.0090000000090
..........................................................................TAGGCCAGTGATTTCACAGTT......................................................................................................................2119.0090001013040
................................................................................................................ATATTGTCAGATCTCTGTCC.................................................................................2018.0080420000020
..................................................................................................................ATTGTCAGATCTCTGTCCTCAAAAA..........................................................................2518.0080700000010
..........................................................................TAGGCCAGTGATTTCACAGTACCC...................................................................................................................2417.0070100002040
..........................................................................TAGGCCAGTGATTTCACAGTACGT...................................................................................................................2417.0070700000000
..................................................................................................................ATTGTCAGATCTCTGTCCTCAC.............................................................................2217.0070600000100
...........................................................................AGGCCAGTGATTTCACAGT.......................................................................................................................1917.0070500101000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAT............................................................................2417.0070400200010
.................................................................................................................TATTGTCAGATCTCTGTCCTCG..............................................................................2217.0070100001050
...........................................................................AGGCCAGTGATTTCACAGTAA.....................................................................................................................2117.0070500100010
..................................................................................................................ATTGTCAGATCTCTGTCCTCCC.............................................................................2217.0070101000050
..................................................................................................................ATTGTCAGATCTCTGTCCTTT..............................................................................2116.0060400000020
..........................................................................TAGGCCAGTGATTTCACAGTAAAA...................................................................................................................2416.0060500001000
.................................................................................................................TATTGTCAGATCTCTGTCCTCTCC............................................................................2416.0060000000060
..................................................................................................................ATTGTCAGATCTCTGTCCTA...............................................................................2016.0060400000020
..........................................................................TAGGCCAGTGATTTCACA.........................................................................................................................1816.0060300000030
................................................................................................................ATATTGTCAGATCTCTGTCCTT...............................................................................2216.0060500000010
.................................................................................................................TATTGTCAGATCTCTGTCCTTC..............................................................................2216.0060002000040
..................................................................................................................ATTGTCAGATCTCTGTCCTT...............................................................................2015.0050200010020
.................................................................................................................TATTGTCAGATCTCTGTCTC................................................................................2015.0050000000050
.................................................................................................................TATTGTCAGATCTCTGTCCG................................................................................2015.0053000000020
................................................................................................................ATATTGTCAGATCTCTGTCCTCT..............................................................................2315.0050100000040
.................................................................................................................TATTGTCAGATCTCTGTCCTTCC.............................................................................2314.0040000000040
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAG............................................................................2414.0040110100010
...........................................................................AGGCCAGTGATTTCACAGTACGTC..................................................................................................................2414.0040000004000
.................................................................................................................TATTGTCAGATCTCTGTCCTTTC.............................................................................2314.0040100000030
...........................................................................AGGCCAGTGATTTCACAGTACT....................................................................................................................2214.0040101200000
................................................................................................................ATATTGTCAGATCTCTGTC..................................................................................1914.0041000100020
...........................................................................AGGCCAGTGATTTCACAGTACGTT..................................................................................................................2414.0040200101000
...........................................................................AGGCCAGTGATTTCACAGTAAA....................................................................................................................2214.0040300001000
.................................................................................................................TATTGTCAGATCTCTGTCCTCTTC............................................................................2414.0040000001030
...................................................................................................................TTGTCAGATCTCTGTCCT................................................................................1814.0040300000010
..........................................................................TAGGCCAGTGATTTCACAGTC......................................................................................................................2114.0040100003000
..........................................................................TAGGCCAGTGATTTCACAGTACCCC..................................................................................................................2514.0040101000020
.................................................................................................................TATTGTCAGATCTCTGTT..................................................................................1813.0031000000020
..................................................................................................................ATTGTCAGATCTCTGTCC.................................................................................1813.0032100000000
................................................................................................................ATATTGTCAGATCTCTGTCCA................................................................................2113.0030200001000
..........................................................................TAGGCCAGTGATTTCACAGTAT.....................................................................................................................2213.0030200000010
..................................................................................................................ATTGTCAGATCTCTGTCA.................................................................................1813.0032000000010
..................................................................................................................ATTGTCAGATCTCTGTCCCT...............................................................................2013.0033000000000
............................................................................GGCCAGTGATTTCACAGTACGA...................................................................................................................2213.0030300000000
.............................................................................GCCAGTGATTTCACAGTACG....................................................................................................................2013.0030300000000
..................................................................................................................ATTGTCAGATCTCTGTCCC................................................................................1913.0031000000020
..................................................................................................................ATTGTCAGATCTCTGTCCTCCT.............................................................................2213.0030000000030
.................................................................................................................TATTGTCAGATCTCTGTCCTG...............................................................................2113.0030200000010
.............................................................................GCCAGTGATTTCACAGTAC.....................................................................................................................1912.0020200000000
...............................................................................CAGTGATTTCACAGTACG....................................................................................................................1812.0020200000000
............................................................................GGCCAGTGATTTCACAGTACGT...................................................................................................................2212.0020200000000
....................................................................................................................TGTCAGATCTCTGTCCTC...............................................................................1812.0020200000000
.................................................................................................................TATTGTCAGATCTCTGTCCCTT..............................................................................2212.0020000000020
....................................................................................................................TGTCAGATCTCTGTCCTCA..............................................................................1912.0020200000000
...................................................................................................................TTGTCAGATCTCTGTCCTCAAAA...........................................................................2312.0020200000000
................................................................................................................ATATTGTCAGATCTCTGTCT.................................................................................2012.0020000000020
...........................................................................AGGCCAGTGATTTCACAGTACGTTCCC...............................................................................................................2712.0020000000020
...................................................................................................................TTGTCAGATCTCTGTCCTCC..............................................................................2012.0020000000020
.................................................................................................................TATTGTCAGATCTCTGTCCAA...............................................................................2112.0020200000000
...................................................................................................................TTGTCAGATCTCTGTCCTCT..............................................................................2012.0020100000010
.....................................................................................................................GTCAGATCTCTGTCCTCA..............................................................................1812.0020100000010
.................................................................................................................TATTGTCAGATCTCTG....................................................................................1612.0020000000020
.........................................................................GTAGGCCAGTGATTTCACAGTAC.....................................................................................................................2312.0020200000000
...........................................................................AGGCCAGTGATTTCACAGTACGTTT.................................................................................................................2512.0020000110000
..........................................................................TAGGCCAGTGATTTCACAGC.......................................................................................................................2012.0020100001000
.................................................................................................................TATTGTCAGATCTCTGTCCTCAAAT...........................................................................2512.0020110000000
.................................................................................................................TATTGTCAGATCTCTGTCCTCATCC...........................................................................2512.0020000000020
................................................................................................................ATATTGTCAGATCTC......................................................................................1512.0020000000020
..................................................................................................................ATTGTCAGATCTCTGTCCTCATCC...........................................................................2412.0020000000020
........................................................................................................TCTTCTACATATTGTCAGATCTCTG....................................................................................2512.0020000000020
.................................................................................................................TATTGTCAGATCTCTGTCCTCATG............................................................................2412.0020000000020
.................................................................................................................TATTGTCAGATCTCTGTCCTCATC............................................................................2412.0020000000110
....................................................................................................................TGTCAGATCTCTGTCCTCAA.............................................................................2012.0020200000000
..................................................................................................................ATTGTCAGATCTCTGTCCG................................................................................1912.0020100000010
....................................................................................................................TGTCAGATCTCTGTCCTCAAAAA..........................................................................2311.0010100000000
...............................................................................CAGTGATTTCACAGTACC....................................................................................................................1811.0011000000000
..................................................................................................................ATTGTCAGATCTCTGTCG.................................................................................1811.0010000000010
...................................................................................................................TTGTCAGATCTCTGTC..................................................................................1611.0010000000010
...........................................................................AGGCCAGTGATTTCACAGTACGC...................................................................................................................2311.0010100000000
droEug1
AATATAT-------------------------------------------------------------------------------------------TTATTTTTCAAGTTATATTGCACACTTCCCGGCCTTTAAATGTCCAGTGTTTCGACCCTAAACATCTGTGAAATCATAAAATTATATAATTTCATAT------------------SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:45 PM