dpe_2083

CDS [Dper\GL13144-cds]; exon [dper_GLEANR_13326:4]; exon [dper_GLEANR_13326:3]; CDS [Dper\GL13144-cds]; intron [Dper\GL13144-in]

##################################################----------------------------------------------------################################################## CTGGAGGCCGTCAAGTGCGAGGACATCCCCAACAATCCGAGGCCCAGAGCGTGGGTCTCGGCGAAGCCTGCAGAGCCGGATAAGATTCTCCGGATTCTGCAGGTCTGCAACCCCCACCTTCCCACCGCGCCAAATCATCCACGACACGGAGG *************************************************..................((.((((((((........))))).))).))**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V057 head
.............................................................................GGATAAGATTCTCCGGATTCTGC....................................................	23	0	20	1.30	26	18	8	0
...............TGCGAGGACATCCCCAACAATCCGAGG..............................................................................................................	27	0	1	1.00	1	1	0	0
......................................................................................TCTCCGGATTCTGCAGGTCTGCAAC.........................................	25	0	20	0.65	13	0	13	0
.............................................................................GGATAAGATTCTCCGGATTCTGCA...................................................	24	0	20	0.35	7	7	0	0
.....................................................................................TTCTCCGGATTCTGCAGGTCTG.............................................	22	0	20	0.10	2	0	2	0
..............................................................................GATAAGATTCTCCGGATTCTG.....................................................	21	0	20	0.10	2	2	0	0
.......................................................TCTCGGCGAAGCCTGCAGAGCCGGA........................................................................	25	0	20	0.10	2	2	0	0
......................................................................................TCTCCGGATTCTGCAGGTCTGCAACC........................................	26	0	20	0.05	1	1	0	0
....................................................................TGCAGAGCCGGATAAGATTCTCC.............................................................	23	0	20	0.05	1	1	0	0
......................................................................................TCTCCGGAATCTGCAGGTCTGCAA..........................................	24	1	20	0.05	1	1	0	0
.......................................................................................CTCCGGATTCTGCAGGTCTGCAACCCCC.....................................	28	0	20	0.05	1	0	1	0
.............................................................................GCATAAGAGTCTCCGGATTCTGCAG..................................................	25	2	20	0.05	1	1	0	0
.................................................................................AAGATTCTCCGGATTCTGCA...................................................	20	0	20	0.05	1	1	0	0
............................................CAGAGCGTGGGTCTCGGCGA........................................................................................	20	0	20	0.05	1	1	0	0
........................................................................................TCCGGATTCTGCAGGTCTGCAAC.........................................	23	0	20	0.05	1	0	1	0
........................................................................................TCCGGATTCTGCAGGTCTGCAACCCC......................................	26	0	20	0.05	1	1	0	0
...............................................................................................TCTGCAGGTCTGCAACCCCCACC..................................	23	0	20	0.05	1	1	0	0
.....................................................................................TTCTCCGGATTCTGCAGG.................................................	18	0	20	0.05	1	1	0	0
.............................................................................GGATAAGATTCTCCGGATTCT......................................................	21	0	20	0.05	1	1	0	0
.............................................................................GGATAAGATTCTCCGGATTCTGG....................................................	23	1	20	0.05	1	0	1	0
......................................................................................TCTCCGGAATCTGCAGGTCTGCAACCC.......................................	27	1	20	0.05	1	1	0	0
..............................................................GAAGCCTGCAGAGCCGGATAAGATT.................................................................	25	0	20	0.05	1	1	0	0
.............................................................................GGATAAGATTCTCCGGATTCTTCA...................................................	24	1	20	0.05	1	1	0	0
.............................................................................GGATAAGAATCTCCGGATTCTGC....................................................	23	1	20	0.05	1	1	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAG...............................................................................	22	0	20	0.05	1	1	0	0
................................................................................TAAGATTCTCCGGATTCTG.....................................................	19	0	20	0.05	1	1	0	0
...............................................................................................TCTGCAGGCCTGCAACCCCCA....................................	21	1	20	0.05	1	1	0	0
............................................................................CGGATAAGATTCTCCGGATTCTGCA...................................................	25	0	20	0.05	1	1	0	0
...............................................................................................................TAGCACCTTCCCACCGCGC......................	19	3	20	0.05	1	0	0	1
........................................................................................TCCGGATTCTGCAGGTCTGCAACC........................................	24	0	20	0.05	1	0	1	0

GACCTCCGGCAGTTCACGCTCCTGTAGGGGTTGTTAGGCTCCGGGTCTCGCACCCAGAGCCGCTTCGGACGTCTCGGCCTATTCTAAGAGGCCTAAGACGTCCAGACGTTGGGGGTGGAAGGGTGGCGCGGTTTAGTAGGTGCTGTGCCTCC **************************************************..................((.((((((((........))))).))).))*************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo	V057 head	V111 male body
...............................................................TTCGGACGTCTCGGCCTATTCTAA.................................................................	24	0	20	9.15	183	183	0	0	0	0
................................................................TCGGACGTCTCGGCCTATTCTAA.................................................................	23	0	20	8.75	175	174	0	0	0	1
.................................................................CGGACGTCTCGGCCTATTCTAA.................................................................	22	0	20	3.35	67	63	4	0	0	0
...........GTTCACGCTCCTGTAGGGGTTGT......................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
.......................................CCCGGGTCTCGCACCCAGAGC............................................................................................	21	1	1	1.00	1	1	0	0	0	0
...............................................................TTCGGACGTCTCGGCCTATTCTA..................................................................	23	0	20	0.85	17	17	0	0	0	0
........................................................GAGCCGCTTCGGACGTCTCGGCCT........................................................................	24	0	20	0.50	10	0	10	0	0	0
........................................CCGGGTCTCGCACCCGGAGCCGCT........................................................................................	24	1	2	0.50	1	1	0	0	0	0
........................................CCGGGTCTCGCACCTAGAGCCGCT........................................................................................	24	1	2	0.50	1	1	0	0	0	0
............................................................CGCTTCGGACGTCTCGGCCTATTCTAA.................................................................	27	0	20	0.35	7	7	0	0	0	0
.................................................................................................................GGTGGAAGGGTGGGGCCGT....................	19	2	4	0.25	1	0	0	0	1	0
........................................................GAGCCGCTTCGGACGTCTCGGCCTAT......................................................................	26	0	20	0.25	5	4	0	1	0	0
................................................................TCGGACGTCTCGGCCTATTCT...................................................................	21	0	20	0.25	5	5	0	0	0	0
.......................................................................................GAGGCCTAAGACGTCCAGACGT...........................................	22	0	20	0.20	4	4	0	0	0	0
...............................................................GTCGGACGTCTCGGCCTATTCTAA.................................................................	24	1	20	0.15	3	3	0	0	0	0
...................................................................................CTAAGAGGCCTAAGACGTCCAGACGT...........................................	26	0	20	0.15	3	3	0	0	0	0
.................................................................CGGACGTCTCGGCGTATTCTAA.................................................................	22	1	20	0.15	3	3	0	0	0	0
.................................................................CGGACGTCTCGGCCTATTCTA..................................................................	21	0	20	0.15	3	3	0	0	0	0
.................................................................CGGACGTCTCGGCTTATTCTAA.................................................................	22	1	20	0.15	3	3	0	0	0	0
...........................................................CCGCTTCGGACGTCTCGGCCTATTCT...................................................................	26	0	20	0.15	3	0	3	0	0	0
.....................................................................................AAGAGGCCTAAGACGTCCAGACGT...........................................	24	0	20	0.15	3	2	1	0	0	0
........................................................................................AGGCCTAAGACGTCCAGACGT...........................................	21	0	20	0.15	3	1	2	0	0	0
..................................................................GGACGTCTCGGCCTATTCTAA.................................................................	21	0	20	0.15	3	0	0	3	0	0
......................................................................................AGAGGCCTAAGACGTCCAGACGT...........................................	23	0	20	0.10	2	2	0	0	0	0
..........................................................................CGGCCTATTCTAAGAGGCCTAAGACGT...................................................	27	0	20	0.10	2	2	0	0	0	0
..............................................................TTTCGGACGTCTCGGCCTATTCTAA.................................................................	25	1	20	0.10	2	2	0	0	0	0
..............................................................CTTCGGACGTCTCGGCGTATTCTAA.................................................................	25	1	20	0.10	2	2	0	0	0	0
........................................................GAGCCGCTTCGGACGTCTCGGC..........................................................................	22	0	20	0.10	2	2	0	0	0	0
.................................................................................................................GGTCGATAGGTGGCGCGGT....................	19	3	20	0.10	2	0	0	0	2	0
..................................................................GGACGTCTCGGCGTATTCTAA.................................................................	21	1	20	0.10	2	2	0	0	0	0
..............................................................CTTCGGACGTCTCGGCCTATTCTAA.................................................................	25	0	20	0.10	2	0	2	0	0	0
..................................................................................TCTAAGAGGCCTAAGACGTCCAGACGT...........................................	27	0	20	0.10	2	1	0	0	0	1
...............................................................TTCGGACGTCTCGGCCTA.......................................................................	18	0	20	0.10	2	2	0	0	0	0
...............................................................TTCGGACGTCTCGGCCGATTCTAAT................................................................	25	2	20	0.05	1	1	0	0	0	0
......................................................................................GGAGGCCTAAGACGTCCAGACGT...........................................	23	1	20	0.05	1	0	1	0	0	0
.......................................................................................GAGGCCTAAGACGTCCAGACG............................................	21	0	20	0.05	1	1	0	0	0	0
................................................................TGGGACGTCTCGGCCTATTCTAA.................................................................	23	1	20	0.05	1	1	0	0	0	0
........................................................GAGCCGCTTCGGACGTCTCGGCCTA.......................................................................	25	0	20	0.05	1	1	0	0	0	0
...............................................................ATCGGACGTCTCGGCCTATTCTAA.................................................................	24	1	20	0.05	1	1	0	0	0	0
.............................................................................CCTATTCTAAGAGGCCTAAGACGT...................................................	24	0	20	0.05	1	0	0	1	0	0
............................................................CGCTTCGGACGTCTCGGCCTATTCT...................................................................	25	0	20	0.05	1	1	0	0	0	0
......................................................CAGAGCCGCTTCGGACGTCTCGGCCTAT......................................................................	28	0	20	0.05	1	0	1	0	0	0
............................................................CGCTTCGGACGTCTCGGCCTAT......................................................................	22	0	20	0.05	1	1	0	0	0	0
...........................................................CCGCTTCGGACGTCTCTGCCTATTC....................................................................	25	1	20	0.05	1	1	0	0	0	0
...............................................................TTCGGACGTCTCGGCTTATTCTAA.................................................................	24	1	20	0.05	1	1	0	0	0	0
....................................................................ACGTCTCGGCCTATTCTAA.................................................................	19	0	20	0.05	1	1	0	0	0	0
................................................TGCACCCAGAGCCGCTTCGGACGTC...............................................................................	25	1	20	0.05	1	1	0	0	0	0
.........................................................................................GGCCTAAGACGACCAGACGT...........................................	20	1	20	0.05	1	1	0	0	0	0
.................................................................CGGATGTCTCGGCCTATTCTAA.................................................................	22	1	20	0.05	1	0	1	0	0	0
.................................................................CGGACGTCTCGGCCTATTCTAAGAGG.............................................................	26	0	20	0.05	1	1	0	0	0	0
................................................................................ATTCTAAGAGGCCTAAGACGTCCAGACGT...........................................	29	0	20	0.05	1	0	1	0	0	0
..................................................................GGACGTCTCGGCCTATTCTAAG................................................................	22	0	20	0.05	1	1	0	0	0	0
.............................................................................................TAAGACGTCCAGACGTTGGGGGT....................................	23	0	20	0.05	1	1	0	0	0	0
...........................................................CCGCTTCGGACGTCTCGGCCTATT.....................................................................	24	0	20	0.05	1	1	0	0	0	0
...........................................................CCGCTTCGGACGTCTCGGCCT........................................................................	21	0	20	0.05	1	1	0	0	0	0
......................................................................................AGAGGCCTAAGACGTCCAGACGTTGG........................................	26	0	20	0.05	1	0	0	1	0	0
................................................................ACGGACGTCTCGGCCTATTCTAA.................................................................	23	1	20	0.05	1	1	0	0	0	0
.......................................................AGAGCCACTTCGGACGTCTCGGCCTA.......................................................................	26	1	20	0.05	1	0	1	0	0	0
...................................................................GACGTCTCGGCCTATTCTAAGAG..............................................................	23	0	20	0.05	1	1	0	0	0	0
..............................................................................................AAGACGTCCAGACGTTGGGGGTGGT.................................	25	1	20	0.05	1	1	0	0	0	0
..............................................................CTTCGGACGTCTCGGCCTATTCTA..................................................................	24	0	20	0.05	1	1	0	0	0	0
.....................................................................CGTCTCGGCCTATTCTAA.................................................................	18	0	20	0.05	1	1	0	0	0	0
...............................................................TTCGGACATCTCGGCCTATTCTAA.................................................................	24	1	20	0.05	1	1	0	0	0	0
.......................................................AGAGCCGCTTCGGACGTCT..............................................................................	19	0	20	0.05	1	1	0	0	0	0
..................................................................GGACGTCTCGGCCTATTCTAAGA...............................................................	23	0	20	0.05	1	1	0	0	0	0
........................................................AAGCCGCTTCGGACGTCTCGGCCTAT......................................................................	26	1	20	0.05	1	1	0	0	0	0
..............................................................CTTCGGACGTCTCGGCCTATTCT...................................................................	23	0	20	0.05	1	1	0	0	0	0
.......................................................AGAGCCGCTTCGGACGTCTCGGCCTAT......................................................................	27	0	20	0.05	1	1	0	0	0	0
.........................................................................................GGCCTAAGACGTCCAGACGTTGGGGC.....................................	26	1	20	0.05	1	1	0	0	0	0
................................................................TCGGACGTCTCGGCCTATTCTAAG................................................................	24	0	20	0.05	1	1	0	0	0	0
..................................................................GGACGTCTCGGCATATTCTAA.................................................................	21	1	20	0.05	1	1	0	0	0	0
.................................................................CGTACGTCTCGGCCTATTCTAAGAG..............................................................	25	1	20	0.05	1	0	0	1	0	0
...............................................................TTCGGACGTCTCGGGCTATTCTA..................................................................	23	1	20	0.05	1	1	0	0	0	0
......................................................AAGAGCCGCTTCGGACGTCTCGGCCTA.......................................................................	27	1	20	0.05	1	0	1	0	0	0
.................................................................................................ACGTCCAGACGTTGGGGGT....................................	19	0	20	0.05	1	1	0	0	0	0
...................................................................GACGTCTCGGCGTATTCTAA.................................................................	20	1	20	0.05	1	1	0	0	0	0
............................................................CGCTTCGGACGTCTCGGCCTATTC....................................................................	24	0	20	0.05	1	1	0	0	0	0
............................................................CGCTTCGGACGTCTCAGCCTATTCTA..................................................................	26	1	20	0.05	1	1	0	0	0	0
.............................................................GTTTCGGACGTCTCGGCCTATTCTAA.................................................................	26	1	20	0.05	1	1	0	0	0	0
.................................................................CGGACGTCTCGGCCTATTCTAG.................................................................	22	1	20	0.05	1	1	0	0	0	0
.......................................................AGAGCCGCTTCGGACGTCTCGGCCT........................................................................	25	0	20	0.05	1	1	0	0	0	0
.......................................................................................................AGACGTTGGGGGTGGAAG...............................	18	0	20	0.05	1	1	0	0	0	0
...............................................................TTCGGACGTCTAGGCCTATTCTAA.................................................................	24	1	20	0.05	1	0	1	0	0	0
.................................................................................................ACGTCCAGACGTTGGGGGTGGAAGGG.............................	26	0	20	0.05	1	1	0	0	0	0
..........................................................................................AACTAAGACGTCCAGACGT...........................................	19	2	20	0.05	1	1	0	0	0	0
................................................................TCGGACGTATCGGCCTATTCTAA.................................................................	23	1	20	0.05	1	0	1	0	0	0
..................................................................AGACGTCTCGGCCTATTCTAA.................................................................	21	1	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_77:46313-46464 -	dpe_2083	CTGGAGGCCGTCAAGTGCGAGGACATCCCCAACAATCCGAGGCCCAGAGCGTGGGTCTCGGCGAAGCCTGCAGAGCCGGATAAGATTC------TCCGGATTCTGCAGGTCTGCAACCCCCACCTTCCCACCGCGC-----CAAATCATCCA------------------------------CGACACGGAGG
dp5	XL_group1e:9846750-9846936 -		CTGGTGGCCGTGAAGTGGGAGGACATTCCCAGCAAGCCGAGGGGCAGAGCGTGGGTCTCGGCGAAGCCTGCAGAGCCGGATAAGATTC------TCCGGATTCTGCAGGTCTGCAGCCCCCACCTTCCCACAGCCGATTGGAAGGTGGCCAAGGTGAACGAGGAGTCGGTTAGACTTCGCCACGACACGGAGG
droMoj3	scaffold_6500:17457198-17457322 +		CTGGTTGCCGTCGATTGGAGTGAGGTGCCGAGCAGACCGCGAGCTCGAGTCTGGATACCTGCGACGATAAAGGAGCCGGAACGCATTC------TGAAAATGCTGCAACTATGCAATCCGCAGCTGCCAAC--------------------------------------------------------------
droGri2	scaffold_376:896-1033 +		CTGGTCGCTGTCAACTGGAGCGAAGTCCCGAGCAGACCTCGTGCACGCATCTGGATCCCGGCTTCCCTAAAGGAGCCGGACCAAGTGC------TTAACCTTCTGCAACTCTGCAACCCCTCTCTCCCCACCCAAGACTGGAGG-------------------------------------------------
droAna3	scaffold_9337:4943-5096 +		CTGGAGGCGGTGGACTGGGACAAGATCCCCAGCAAACCGAGGGCCCGCGTATGGCTGACAGAGAAGCCGGCGGACCCTGCCACCATTC------TGGCCATGCTCAAAATGTGCAACCCCACACTTCCTACGGCGGACTGGAGAGTCGCCAAGGTGGA---------------------------------GG
droBip1	scf7180000396807:2760-2914 +		CTAGTGGCGGTTGACTGGGAGGAGATCACAAGCAAACCGAGG-CGCGAGTGTGGCTCACTGAAAAGCCAGCCGACCCTAAGACCATCC------TAACTATGCTTAGGTTGTGCAATCCGACGCTTCCCACGGCGGACTGGCGAATCGCCAAGGTCGAGGAG-------------------------------
droEle1	scf7180000490714:63231-63334 -		CTGGATGTCTGCGCCTGCGCCGATATCCCGTCCAGACCTAGGGCCAGAGTGTGGGTCTCTGCAGAACGT--TGACTCGAATAG-GTCTTAAAGATTAGGATTCTTCA--------------------------------------------------------------------------------------
droTak1	scf7180000415571:18022-18146 -		CTGGCCGCCTGTGAGGCAGCGGATATCCCGTACAGACCAAGGGCGAGGGTGTGGTTGCCGTCTGAACCCTCTGAGCCAGAGGCTATTC------TTAGCCTCTTGACTAGGTTCAACCCCAAACTCCCAAC--------------------------------------------------------------
droYak3	v2_chrUn_001:378765-378893 -		CTTGTTGCGCTAAGGTGATTCGACGTACCTTGCCGACCCCGGCCAAGGATCTGGATCCCGGCATCCATCAAGGCGCCGGACCAGATCC------TCACCATGCTGCAGCGCTGCATCCCTCACCTTCCCACCTCG----------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CTGGAGGCCGTCAAGTGCGAGGACATCCCCAACAATCCGAGGCCCAGAGCGTGGGTCTCGGCGAAGCCTGCAGAGCCGGATAAGATTC------TCCGGATTCTGCAGGTCTGCAACCCCCACCTTCCCACCGCGC-----CAAATCATCCA------------------------------CGACACGGAGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................GGATAAGATTC------TCCGGATTCTGC.......................................................................................	23	20	1.30	26	8	18	0	0	0	0
...............TGCGAGGACATCCCCAACAATCCGAGG.......................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................TC------TCCGGATTCTGCAGGTCTGCAAC............................................................................	25	20	0.65	13	13	0	0	0	0	0
.............................................................................GGATAAGATTC------TCCGGATTCTGCA......................................................................................	24	20	0.35	7	0	7	0	0	0	0
.....................................................................................TTC------TCCGGATTCTGCAGGTCTG................................................................................	22	20	0.10	2	2	0	0	0	0	0
..............................................................................GATAAGATTC------TCCGGATTCTG........................................................................................	21	20	0.10	2	0	2	0	0	0	0
.......................................................TCTCGGCGAAGCCTGCAGAGCCGGA.................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
......................................................................................TC------TCCGGATTCTGCAGGTCTGCAACC...........................................................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................TGCAGAGCCGGATAAGATTC------TCC................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................C------TCCGGATTCTGCAGGTCTGCAACCCCC........................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................................AAGATTC------TCCGGATTCTGCA......................................................................................	20	20	0.05	1	0	1	0	0	0	0
............................................CAGAGCGTGGGTCTCGGCGA.................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..............................................................................................TCCGGATTCTGCAGGTCTGCAAC............................................................................	23	20	0.05	1	1	0	0	0	0	0
..............................................................................................TCCGGATTCTGCAGGTCTGCAACCCC.........................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................TCTGCAGGTCTGCAACCCCCACC.....................................................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................TTC------TCCGGATTCTGCAGG....................................................................................	18	20	0.05	1	0	1	0	0	0	0
.............................................................................GGATAAGATTC------TCCGGATTCT.........................................................................................	21	20	0.05	1	0	1	0	0	0	0
.............................................................................GGATAAGATTC------TCCGGATTCTGG.......................................................................................	23	20	0.05	1	1	0	0	0	0	0
..............................................................GAAGCCTGCAGAGCCGGATAAGATT..........................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAG........................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTG........................................................................................	19	20	0.05	1	0	1	0	0	0	0
............................................................................CGGATAAGATTC------TCCGGATTCTGCA......................................................................................	25	20	0.05	1	0	1	0	0	0	0
..............................................................................................TCCGGATTCTGCAGGTCTGCAACC...........................................................................	24	20	0.05	1	1	0	0	0	0	0

dp5

CTGGTGGCCGTGAAGTGGGAGGACATTCCCAGCAAGCCGAGGGGCAGAGCGTGGGTCTCGGCGAAGCCTGCAGAGCCGGATAAGATTC------TCCGGATTCTGCAGGTCTGCAGCCCCCACCTTCCCACAGCCGATTGGAAGGTGGCCAAGGTGAACGAGGAGTCGGTTAGACTTCGCCACGACACGGAGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................ATTC------TCCGGATTCTGCAGGTCTG................................................................................	23	14	22.93	321	1	313	0	0	0	0	0	7	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCTGC...............................................................................	24	13	14.62	190	0	173	6	1	1	2	2	5	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCT.................................................................................	22	14	12.21	171	0	163	3	0	2	0	1	2	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTC..................................................................................	21	15	4.33	65	2	55	4	0	1	2	1	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGA.......................................................................................................................	23	13	3.77	49	0	49	0	0	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAG......................................................................................................................	24	13	3.46	45	0	44	0	0	0	0	1	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAG........................................................................................................................	22	13	3.08	40	0	40	0	0	0	0	0	0	0	0
....................................................................................................................................GCCGATTGGAAGGTGGCCAAG........................................	21	20	2.80	56	0	55	1	0	0	0	0	0	0	0
.....................................................................................TTC------TCCGGATTCTGCAGGTCTG................................................................................	22	14	2.29	32	0	32	0	0	0	0	0	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCTGCA..............................................................................	25	13	1.85	24	0	24	0	0	0	0	0	0	0	0
.......................................................TCTCGGCGAAGCCTGCAGAGC.....................................................................................................................	21	15	1.60	24	0	20	1	0	1	2	0	0	0	0
.....................................................................................TTC------TCCGGATTCTGCAGGTCT.................................................................................	21	14	1.50	21	0	20	0	0	0	0	1	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGT...................................................................................	20	16	1.44	23	0	19	1	0	1	0	1	1	0	0
...................................................TGGGTCTCGGCGAAGCCTGC..........................................................................................................................	20	13	1.15	15	0	13	1	1	0	0	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTGCAGG....................................................................................	23	13	1.15	15	0	10	0	0	0	0	0	5	0	0
.....................................................................................TTC------TCCGGATTCTGCAGGTCTGC...............................................................................	23	13	1.08	14	0	14	0	0	0	0	0	0	0	0
......................................................................................................CTGCAGGTCTGCAGCCCCCAC......................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................GTTAGACTTCGCCACGACACGGAG.	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACTTCGCCACGACACGGAGG	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................GCCGATTGGAAGGTGGCCAAGGTG.....................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........GTGAAGTGGGAGGACATTT.....................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................CAGCCCCCACCTTCCCACAGC...........................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGACTTCGCCACGACACGGAG.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGACTTCGCCACGACACGGA..	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................CCGATTGGAAGGTGGCCAAGG.......................................	21	20	0.85	17	0	17	0	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTGCAG........................................................................................................................	23	11	0.73	8	0	8	0	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTGC..........................................................................................................................	21	11	0.73	8	0	8	0	0	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAGC.....................................................................................................................	25	13	0.69	9	0	7	0	0	0	0	0	2	0	0
...................................................TGGGTCTCGGCGAAGCCTGCA.........................................................................................................................	21	13	0.62	8	0	6	0	0	0	1	1	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTGCAGA.......................................................................................................................	24	11	0.55	6	0	6	0	0	0	0	0	0	0	0
.....................................................................................TTC------TCCGGATTCTGCAGGTC..................................................................................	20	15	0.53	8	0	8	0	0	0	0	0	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGG....................................................................................	19	16	0.50	8	0	7	0	0	0	0	0	1	0	0
..........................................................CGGCGAAGCCTGCAGAGCCGG..................................................................................................................	21	15	0.47	7	0	7	0	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTG...........................................................................................................................	20	11	0.45	5	0	4	0	0	0	0	1	0	0	0
........CGTGAAGTGGGAGGACAT.......................................................................................................................................................................	18	14	0.43	6	0	6	0	0	0	0	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAGAGC.....................................................................................................................	22	15	0.40	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................CCGGATTCTGCAGGTCTGCA..............................................................................	20	13	0.38	5	0	4	0	0	0	0	1	0	0	0
.......................................................TCTCGGCGAAGCCTGCAGAGCCGGA.................................................................................................................	25	14	0.36	5	0	4	0	0	0	0	0	1	0	0
.............................................................................GGATAAGATTC------TCCGGATTCTGC.......................................................................................	23	14	0.36	5	0	1	0	0	0	0	0	3	1	0
.......................................................TCTCGGCGAAGCCTGCAGAGCC....................................................................................................................	22	15	0.33	5	0	5	0	0	0	0	0	0	0	0
....................................................GGGTCTCGGCGAAGCCTGCAGA.......................................................................................................................	22	13	0.31	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................CCGATTGGAAGGTGGCCAAGGT......................................	22	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.......................................................TCTCGGCGAAGCCTGCAGAGCCG...................................................................................................................	23	14	0.29	4	0	4	0	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCT............................................................................................................................	19	11	0.27	3	0	3	0	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTGCA.........................................................................................................................	22	11	0.27	3	0	3	0	0	0	0	0	0	0	0
.........................................................TCGGCGAAGCCTGCAGAGCCGGA.................................................................................................................	23	15	0.27	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................GCCGATTGGAAGGTGGCCAAGA.......................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................AGATTC------TCCGGATTCTGCAGG....................................................................................	21	16	0.25	4	0	4	0	0	0	0	0	0	0	0
.............................................................................GGATAAGATTC------TCCGGATTCTGCAGG....................................................................................	26	12	0.25	3	0	2	0	0	0	0	0	1	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAGCCG...................................................................................................................	27	12	0.25	3	0	3	0	0	0	0	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTGCAGGTC..................................................................................	25	12	0.25	3	0	3	0	0	0	0	0	0	0	0
.........................................................TCGGCGAAGCCTGCAGAGCC....................................................................................................................	20	16	0.25	4	0	2	1	1	0	0	0	0	0	0
......................................................................................TC------TCCGGATTCTGCAGGTCTGC...............................................................................	22	13	0.23	3	0	3	0	0	0	0	0	0	0	0
....................................................GGGTCTCGGCGAAGCCTGCAGAG......................................................................................................................	23	13	0.23	3	0	3	0	0	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAGCC....................................................................................................................	26	13	0.23	3	0	3	0	0	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTG...........................................................................................................................	19	13	0.23	3	0	3	0	0	0	0	0	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCTA................................................................................	23	14	0.21	3	0	2	0	0	1	0	0	0	0	0
............................................................................................................................TTCCCACAGCCGATTGGAAGG................................................	21	20	0.20	4	0	3	0	0	0	0	1	0	0	0
....................................................................................................................................GCCGATTGGAAGGTGGCCAAGGT......................................	23	20	0.20	4	0	0	1	0	0	0	0	3	0	0
.......................................................TCTCGGCGAAGCCTGCAGAG......................................................................................................................	20	15	0.20	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................CCACAGCCGATTGGAAGGTGGC............................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................CCGATTGGAAGGTGGCCAAG........................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................CTTCCCACAGCCGATTGGAAG.................................................	21	20	0.20	4	0	3	0	0	0	1	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAGA.......................................................................................................................	20	15	0.20	3	0	3	0	0	0	0	0	0	0	0
......................................................................................TC------TCCGGATTCTGCAGGTC..................................................................................	19	15	0.20	3	0	3	0	0	0	0	0	0	0	0
...................................................................................GATTC------TCCGGATTCTGCAGG....................................................................................	20	16	0.19	3	0	3	0	0	0	0	0	0	0	0
.................................................CGTGGGTCTCGGCGAAGCCTG...........................................................................................................................	21	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.................................................CGTGGGTCTCGGCGAAGCCTGC..........................................................................................................................	22	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.............................................AGAGCGTGGGTCTCGGCGAAG...............................................................................................................................	21	11	0.18	2	0	1	0	0	0	0	1	0	0	0
................................................GCGTGGGTCTCGGCGAAGCC.............................................................................................................................	20	11	0.18	2	0	0	0	0	0	0	0	0	2	0
............................................CAGAGCGTGGGTCTCGGCGAAG...............................................................................................................................	22	11	0.18	2	0	2	0	0	0	0	0	0	0	0
............................................................GCGAAGCCTGCAGAGCCGGAT................................................................................................................	21	12	0.17	2	0	1	0	0	0	0	1	0	0	0
....................................................GGGTCTCGGCGAAGCCTG...........................................................................................................................	18	13	0.15	2	0	2	0	0	0	0	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTGCAGGT...................................................................................	24	13	0.15	2	0	1	1	0	0	0	0	0	0	0
.............................................................................GGATAAGATTC------TCCGGATTCTGCAG.....................................................................................	25	13	0.15	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................C------TCCGGATTCTGCAGGTCTGC...............................................................................	21	13	0.15	2	0	1	0	1	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAGA.....................................................................................................................	25	13	0.15	2	0	2	0	0	0	0	0	0	0	0
....................................................GGGTCTCGGCGAAGCCTGCAGAGC.....................................................................................................................	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................TCCGGATTCTGCAGGTCTGCA..............................................................................	21	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TTC------TCCGGATTCTGCAGGTCTGCA..............................................................................	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................CCACAGCCGATTGGAAGGTGG.............................................	21	20	0.15	3	0	2	0	0	0	0	1	0	0	0
....................................................................................................................................GCCGATTGGAAGGTGGCCAAGG.......................................	22	20	0.15	3	0	0	2	0	0	1	0	0	0	0
.............................................................................................................................TCCCACAGCCGATTGGAAGGTG..............................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................CAGAGCGTGGGTCTCGGC...................................................................................................................................	18	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................CAGAGCCGGATAAGATTC------TCCGGA.............................................................................................	24	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.......................................................TCTCGGCGAAGCCTGCAGAGCCGG..................................................................................................................	24	14	0.14	2	0	2	0	0	0	0	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAGAGCCGGA.................................................................................................................	26	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................C------TCCGGATTCTGCAGGTCTG................................................................................	20	14	0.14	2	0	2	0	0	0	0	0	0	0	0
......................................................................................TC------TCCGGATTCTGCAGGTCTG................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAAA.....................................................................................................................	25	14	0.14	2	0	2	0	0	0	0	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTGCAG.....................................................................................	22	14	0.14	2	0	0	0	0	0	0	0	2	0	0
......................................................................CAGAGCCGGATAAGATTC------TCC................................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
........................................................CTCGGCGAAGCCTGCAGAGCCGGA.................................................................................................................	24	14	0.14	2	0	2	0	0	0	0	0	0	0	0
...................................................................................GATTC------TCCGGATTCTGCAGGTCTG................................................................................	24	14	0.14	2	0	2	0	0	0	0	0	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCTT................................................................................	23	14	0.14	2	0	1	1	0	0	0	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAGAGCCG...................................................................................................................	24	14	0.14	2	0	2	0	0	0	0	0	0	0	0
..............................................................GAAGCCTGCAGAGCCGGATA...............................................................................................................	20	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.................................................................................AAGATTC------TCCGGATTCTGCAGGTC..................................................................................	24	15	0.13	2	0	2	0	0	0	0	0	0	0	0
......................................................................CAGAGCCGGATAAGATTC------T..................................................................................................	19	15	0.13	2	0	1	0	0	0	0	1	0	0	0
.........................................................TCGGCGAAGCCTGCAGAGCCG...................................................................................................................	21	15	0.13	2	0	2	0	0	0	0	0	0	0	0
........................................................CTCGGCGAAGCCTGCAGAGCC....................................................................................................................	21	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.........................................................TCGGCGAAGCCTGCAGAGCCGG..................................................................................................................	22	15	0.13	2	0	2	0	0	0	0	0	0	0	0
..........................................................CGGCGAAGCCTGCAGAGCCGGT.................................................................................................................	22	15	0.13	2	0	2	0	0	0	0	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAGAG......................................................................................................................	21	15	0.13	2	0	2	0	0	0	0	0	0	0	0
........................................................CTCGGCGAAGCCTGCAGAGC.....................................................................................................................	20	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.......CCGTGAAGTGGGAGGACA........................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................TTC------TCCGGATTCTGCAGGT...................................................................................	19	16	0.13	2	0	2	0	0	0	0	0	0	0	0
...................................................................CTGCAGAGCCGGATAAGATTC------...................................................................................................	21	16	0.13	2	0	1	0	1	0	0	0	0	0	0
.......CCGTGAAGTGGGAGGACAT.......................................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..................................................................................AGATTC------TCCGGATTCTGCAGGT...................................................................................	22	16	0.13	2	0	1	0	0	0	0	1	0	0	0
................................................................AGCCTGCAGAGCCGGATA...............................................................................................................	18	17	0.12	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................CCCACAGCCGATTGGAAGGTGGCCAAGG.......................................	28	18	0.11	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................CCCACAGCCGATTGGAAGGTG..............................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................CAGCCGATTGGAAGGTGGC............................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................CCACAGCCGATTGGAAGGTGGCCA..........................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................CCGATTGGAAGGTGGCCAA.........................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................TCCCACAGCCGATTGGAAGGTGGCC...........................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................TCCCACAGCCGATTGGAAGG................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................CGTGGGTCTCGGCGAAGCCT............................................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................................CAGAGCGTGGGTCTCGGCGAA................................................................................................................................	21	11	0.09	1	0	0	0	0	1	0	0	0	0	0
............................................CAGAGCGTGGGTCTCGGCGAAGC..............................................................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAGAGCCGGAT................................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...............................................AGCGTGGGTCTCGGCGAAGCC.............................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTGCAGAG......................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
................................................GCGTGGGTCTCGGCGAAGC..............................................................................................................................	19	11	0.09	1	0	0	0	1	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTGCAGT.......................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..............................................GAGCGTGGGTCTCGGCGAAGCC.............................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.........................................................TCGGCGAAGCCTGCAGAGCCGGATAA..............................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	1	0
..................................................GTGGGTCTCGGCGAAGCCTT...........................................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..............................................GAGCGTGGGTCTCGGCGAAGCCTGT..........................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTGCAGGTCTGCA..............................................................................	29	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAG...............................................................................................................................	16	11	0.09	1	0	0	0	0	0	0	0	1	0	0
.............................................................CGAAGCCTGCAGAGCCGGATAAGA............................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..............................................GAGCGTGGGTCTCGGCGAAG...............................................................................................................................	20	11	0.09	1	0	0	1	0	0	0	0	0	0	0
..................................................GTGGGTCTCGGCGAAGCCTGCAGAGC.....................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................................................................CGGATAAGATTC------TCCGGATTCTGCAGG....................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	0	1	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAGCCGG..................................................................................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................GGGTCTCGGCGAAGCCTGCAGAGCCG...................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................GAGCGTGGGTCTCGGCGA.................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCTGCT..............................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................GATAAGATTC------TCCGGATTCTGCAGG....................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TCCGGATTCTGCAGGTCTGC...............................................................................	20	13	0.08	1	1	0	0	0	0	0	0	0	0	0
................................................................................................CGGATTCTGCAGGTCTGC...............................................................................	18	13	0.08	1	0	0	0	1	0	0	0	0	0	0
.............................................AGAGCGTGGGTCTCGGCGT.................................................................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTGCAGGTA..................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGT.......................................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................GATTC------TCCGGATTCTGCAGGTCTGC...............................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................GGATTCTGCAGGTCTGCA..............................................................................	18	13	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................................GAGCCGGATAAGATTC------TCCG...............................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................TGCAGAGCCGGATAAGATTC------TCCGT..............................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................TGCAGAGCCGGATAAGATTC------TCCG...............................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................CCTGCAGAGCCGGATAAGATTC------TCC................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................C------TCCGGATTCTGCAGGTCT.................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCTGA...............................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................TGGGTCTCGGCGAAGCCTGCAGAA......................................................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0
........CGTGAAGTGGGAGGACAA.......................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................................GGATAAGATTC------TCCGGATTCTGCA......................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAGAGCCGG..................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................GATTC------TCCGGATTCTGCAGGTCT.................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................TGCAGAGCCGGATAAGATTC------TCC................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................TGCAGAGCCGGATAAGATTC------TCCGGAT............................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................ATTC------TCCGGATTCTGCAGGTCTAA...............................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TC------TCCGGATTCTGCAGGTCT.................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................GAAGCCTGCAGAGCCGGATAAGATTC------...................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................GTCTCGGCGAAGCCTGCAG........................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................AAGCCTGCAGAGCCGGATAAGATTC------...................................................................................................	25	15	0.07	1	0	0	0	0	1	0	0	0	0	0
.....................................................GGTCTCGGCGAAGCCTGCAGAGC.....................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................TGCAGAGCCGGATAAGATTC------T..................................................................................................	21	15	0.07	1	0	0	0	0	0	0	1	0	0	0
..............................................................GAAGCCTGCAGAGCCGGAT................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................ATAAGATTC------TCCGGATTCTGC.......................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................................TAAGATTC------TCCGGATTCTGCA......................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	1	0
.....................................................GGTCTCGGCGAAGCCTGCAGAG......................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................ATAAGATTC------TCCGGATTCTG........................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	1	0
.......................................................TCTCGGCGAAGCCTGCAGA.......................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................CTGCAGAGCCGGATAAGATTC------T..................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................GCAGAGCCGGATAAGATTC------TCAAA..............................................................................................	24	15	0.07	1	0	0	1	0	0	0	0	0	0	0

droMoj3

CTGGTTGCCGTCGATTGGAGTGAGGTGCCGAGCAGACCGCGAGCTCGAGTCTGGATACCTGCGACGATAAAGGAGCCGGAACGCATTC------TGAAAATGCTGCAACTATGCAATCCGCAGCTGCCAAC--------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

CTGGTCGCTGTCAACTGGAGCGAAGTCCCGAGCAGACCTCGTGCACGCATCTGGATCCCGGCTTCCCTAAAGGAGCCGGACCAAGTGC------TTAACCTTCTGCAACTCTGCAACCCCTCTCTCCCCACCCAAGACTGGAGG-------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

CTGGAGGCGGTGGACTGGGACAAGATCCCCAGCAAACCGAGGGCCCGCGTATGGCTGACAGAGAAGCCGGCGGACCCTGCCACCATTC------TGGCCATGCTCAAAATGTGCAACCCCACACTTCCTACGGCGGACTGGAGAGTCGCCAAGGTGGA---------------------------------GG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................CTGACAGAGAAGCCGGCGGACCC....................................................................................................................	23	20	6.60	132	132	0	0	0	0	0
.......................................................TGACAGAGAAGCCGGCGGACCCTG..................................................................................................................	24	20	0.40	8	8	0	0	0	0	0
...................................................TGGCTGACAGAGAAGCCGGCGGACC.....................................................................................................................	25	20	0.20	4	0	4	0	0	0	0
...............TGGGACAAGATCCCCAGCAAACCGAG........................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.......................................................TGACAGAGAAGCCGGCGGACCCTGCCAC..............................................................................................................	28	20	0.15	3	3	0	0	0	0	0
.......................................................TGACAGAGAAGCCGGCGGACCCTGC.................................................................................................................	25	20	0.15	3	0	3	0	0	0	0
...............................GCAAACCGAGGGCCCGCGTATGG...........................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
..........TGGACTGGGACAAGATCCCCAGC................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................TGGAGAGTCGCCAAGGTGGA---------------------------------G.	21	20	0.10	2	0	1	1	0	0	0
..........................CCCCAGCAAACCGAGGGCCCG..................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.....................................................GCTGACAGAGAAGCCGGCGG........................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................AGAAGCCGGCGGACCCTGCCACCATTT------...................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.TGGAGGCGGTGGACTGGGACAAGA........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................GACTGGAGAGTCGCCAAGGTGGA---------------------------------GG	25	20	0.05	1	1	0	0	0	0	0
..........................CCCCAGCAAACCGAGGGCCCGC.................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................TGACAGAGAAGCCGGCGGACCC....................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.....................AAGATCCCCAGCAAACCGAGG.......................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................ACCATTC------TGGCCATGCTCAAAATG..................................................................................	24	20	0.05	1	1	0	0	0	0	0
.........................................................ACAGAGAAGCCGGCGGACCCTGCCAC..............................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........GTGGACTGGGACAAGATCCCCAGCAAA.............................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................CTACGGCGGACTGGAGAGTCG.............................................	21	20	0.05	1	0	0	0	0	1	0

droBip1

CTAGTGGCGGTTGACTGGGAGGAGATCACAAGCAAACCGAGG-CGCGAGTGTGGCTCACTGAAAAGCCAGCCGACCCTAAGACCATCC------TAACTATGCTTAGGTTGTGCAATCCGACGCTTCCCACGGCGGACTGGCGAATCGCCAAGGTCGAGGAG-------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGGATGTCTGCGCCTGCGCCGATATCCCGTCCAGACCTAGGGCCAGAGTGTGGGTCTCTGCAGAACGT--TGACTCGAATAG-GTCTTAAAGATTAGGATTCTTCA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGGCCGCCTGTGAGGCAGCGGATATCCCGTACAGACCAAGGGCGAGGGTGTGGTTGCCGTCTGAACCCTCTGAGCCAGAGGCTATTC------TTAGCCTCTTGACTAGGTTCAACCCCAAACTCCCAAC--------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

CTTGTTGCGCTAAGGTGATTCGACGTACCTTGCCGACCCCGGCCAAGGATCTGGATCCCGGCATCCATCAAGGCGCCGGACCAGATCC------TCACCATGCTGCAGCGCTGCATCCCTCACCTTCCCACCTCG----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................TGCCGACCCCGGCCAAGGATCTGGA..........................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
.......................................................................................C------TCACCATGCTGCAGCGCTGCATCC...........................................................................	25	5	2.20	11	0	11	0	0	0	0	0	0	0	0	0
.......................................................................................C------TCACCATGCTGCAGCGCTGCATC............................................................................	24	5	0.60	3	0	2	0	0	0	0	1	0	0	0	0
...............................................................TCCATCAAGGCGCCGGACCAGATCC------TC.................................................................................................	27	19	0.47	9	0	0	1	0	0	0	0	0	0	0	8
...................................................TGGATCCCGGCATCCATCAAGGCGCC....................................................................................................................	26	20	0.40	8	0	4	0	0	0	0	0	0	0	0	4
.......................................................................................C------TCACCATGCTGCAGCGCTGCATCCC..........................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................TCACCATGCTGCAGCGCTGCATCC...........................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TCC------TCACCATGCTGCAGCGCTGCATC............................................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................CCATGCTGCAGCGCTGCATCCC..........................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................TCACCATGCTGCAGCGCTGCATCCC..........................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................................................TCTGGATCCCGGCATCCATCAAGGCGC.....................................................................................................................	27	20	0.15	3	0	2	0	0	0	0	0	0	0	0	1
........................................................CCCGGCATCCATCAAGGCGCCGGACCAGA............................................................................................................	29	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.................................................................................CAGATCC------TCACCATGCTGCAGCGC..................................................................................	24	16	0.13	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................C------TCACCATGCTGCAGCGCTGC...............................................................................	21	16	0.13	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................TCCATCAAGGCGCCGGACCAGATCC------T..................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................CCGGACCAGATCC------TCACCATGCTGCA......................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................GCATCCATCAAGGCGCCGGACCAGA............................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................CCAGATCC------TCACCATGCTGCAGCGCTGC...............................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................CCAGATCC------TCACCATGCTGCAGCGCT.................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................TCAAGGCGCCGGACCAGATCC------TCACC..............................................................................................	26	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................CCAGATCC------TCACCATGCTGCAGCGC..................................................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................C------TCACCATGCTGCAGCGCTGCA..............................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................C------TCACCATGCTGCAGCGCTG................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................GGCATCCATCAAGGCGCCGGACCA..............................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................GATCTGGATCCCGGCATCCATCAAGG........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TCCCGGCATCCATCAAGGCGC.....................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................ACCAGATCC------TCACCATGCTGCAGC....................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................GCATCCATCAAGGCGCCGGACCAGATC..........................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................TCCATCAAGGCGCCGGACCAGATCC------...................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................ACCAGATCC------TCACCATGCTGCAGCG...................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................GGATCCCGGCATCCATCAAGGCGCC....................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................TCCATCAAGGCGCCGGACCAGAT...........................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................TCTGGATCCCGGCATCCATCAAGGCG......................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................GCATCCATCAAGGCGCCGGACC...............................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

dpe_2083

scaffold_77:46363-46414 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.7	-18.0