ID:

dpe_2082

 Coordinate:

scaffold_77:45924-45989 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7

Flybase annnotation

CDS [Dper\GL13145-cds]; exon [dper_GLEANR_13327:1]; CDS [Dper\GL13145-cds]; exon [dper_GLEANR_13327:2]; intron [Dper\GL13145-in]

No Repeatable elements found

mature
  1. scaffold_714:7078-7099 -
  2. scaffold_164:12151-12172 -
  3. scaffold_380:17092-17113 -
  4. dpe_2082  scaffold_77:45965-45986 -
  5. scaffold_91:4599-4620 -
  6. scaffold_91:53248-53269 -
  7. scaffold_141:63769-63790 -
  8. scaffold_991:1747-1768 -
  9. scaffold_109:175304-175325 -
  10. scaffold_102:133602-133623 -
  11. scaffold_2786:2485-2506 -
  12. scaffold_2939:1719-1740 -
  13. scaffold_3259:1227-1248 -
  14. scaffold_3502:2127-2148 -
  15. scaffold_1110:4382-4403 -
  16. scaffold_1505:4947-4968 -
  17. scaffold_4075:1728-1749 -
  18. scaffold_1600:3457-3478 -
  19. scaffold_1705:2118-2139 -
  20. scaffold_6247:455-476 -
star

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
GAAACAGGGTCTCTGATCTGAGGACTAATGACTATAAGCTGACACCGCAGGTAAAACTCGCACCTGCATCCTTGCAAAAAGAGATTTGCACTTATTTTTGCTTCCGAATTTCTCAGTGCTCACTGAGAATCTGCTCCACAGACTGCGAGGCCAAGGCGACTGTGCT
**************************************************(((((.(((.....((((....))))....))).)))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V057
head
........................................................................................................................CAGTGAGAATCTGATCCACCGA........................ 22 3 2 13.50 27 21 5 1 0
............................................................................................................................GAGAATCTGATCCACCGAAT...................... 20 3 6 7.00 42 33 9 0 0
............................................................................................................................GAGAATCTGATCCACCGA........................ 18 2 4 2.50 10 8 2 0 0
........................................................................................................................CAGTGAGAATCTGATCCACCG......................... 21 3 3 2.33 7 3 4 0 0
.........................................................................................................................AGTGAGAATCTGATCCACCGA........................ 21 3 13 1.08 14 13 1 0 0
.......................................................................................................................................CCACAGACTGCGAGGCCAAGGCGACTG.... 27 0 1 1.00 1 0 1 0 0
.........................................................................................................................................ACAGACTGCGAGGCCAAGGCGACT..... 24 0 1 1.00 1 0 1 0 0
.......................................................................................................................................CCACAGACTGCGAGGCCAAGG.......... 21 0 1 1.00 1 0 1 0 0
..................TGAGGACTAATGACTATAAGCTGACA.......................................................................................................................... 26 0 1 1.00 1 0 1 0 0
..................TGAGGACTAATGACTATAAGCTGACACC........................................................................................................................ 28 0 1 1.00 1 0 1 0 0
.......................................................................................................................................CCACAGACTGCGAGGCCAAGGCGA....... 24 0 1 1.00 1 0 1 0 0
............................................................................................................................GAGAATCTGATCCACCGAATG..................... 21 3 3 0.67 2 1 0 1 0
.........................................................................................................................AGTGAGAATCTGATCCACCGACTG..................... 24 3 2 0.50 1 0 0 1 0
...................................................................................GTTTGCACTTATTTTTGCTTCCGA........................................................... 24 1 2 0.50 1 0 1 0 0
...........................................................................................................................TGAGAATCTGATCCACCGA........................ 19 2 2 0.50 1 0 1 0 0
.......................................................................................................................TCAGTGAGAATCTGATCCACCGA........................ 23 3 2 0.50 1 0 1 0 0
........................................................................................................................................CACAGACTGCGAGGCCAAGG.......... 20 0 20 0.35 7 0 7 0 0
........................................................................................................................CAGTGAGAATCTGATCCACA.......................... 20 2 3 0.33 1 0 1 0 0
.................................................................................................................................................AAAGGCCTAGGCGACTGT... 18 3 20 0.15 3 1 0 2 0
.........................................................................................................................AGTGAGAATCTGGTCCACCG......................... 20 3 8 0.13 1 1 0 0 0
..........................................................................................................................GTGAGAATCTGATCCACTGA........................ 20 3 9 0.11 1 0 0 1 0
.....................................................AAACTCGCACCTGCATCCTTGC........................................................................................... 22 0 20 0.10 2 0 2 0 0
.................................................GGTAAAACTCGCACCTGCATCCT.............................................................................................. 23 0 20 0.05 1 1 0 0 0
......................................................AACTCGCACCTGCATCCTTGCAAAA....................................................................................... 25 0 20 0.05 1 0 1 0 0
........................................................CTCGCACCTGCATCCTTGCAAAAA...................................................................................... 24 0 20 0.05 1 0 1 0 0
...................................................TAAAACTCGCACCTGCATCCT.............................................................................................. 21 0 20 0.05 1 0 1 0 0
........................................................................................................................CAATGAGAATCTGATCCAC........................... 19 2 20 0.05 1 1 0 0 0
............................................................CACCTGCATCCTTGCAAAAAGAGATT................................................................................ 26 0 20 0.05 1 0 1 0 0
...................................................TAAAACTCGCACCTGCATCCTTGGAAAA....................................................................................... 28 1 20 0.05 1 0 1 0 0
..................................................GTAAAACTCGCACCTGCATCCTTG............................................................................................ 24 0 20 0.05 1 0 1 0 0
....................................................AAAACTCGCACCTGCATCCTTG............................................................................................ 22 0 20 0.05 1 0 1 0 0
....................................................................................................................TGCTCACTGAGAATCTGCTC.............................. 20 0 20 0.05 1 0 1 0 0
............................................................................................................................GAGAATCTGATCCACCGAG....................... 19 3 20 0.05 1 1 0 0 0
..........................................................CGCACCTGCATCCTTGCAAAAAG..................................................................................... 23 0 20 0.05 1 0 1 0 0
....................................................................................................................TGCTCACTGAGAGTCTGCTC.............................. 20 1 20 0.05 1 0 0 0 1

Anti-sense strand reads

CTTTGTCCCAGAGACTAGACTCCTGATTACTGATATTCGACTGTGGCGTCCATTTTGAGCGTGGACGTAGGAACGTTTTTCTCTAAACGTGAATAAAAACGAAGGCTTAAAGAGTCACGAGTGACTCTTAGACGAGGTGTCTGACGCTCCGGTTCCGCTGACACGA
**************************************************(((((.(((.....((((....))))....))).)))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V042
embryo
..............................................................GGACGTAGGAACGTTTTTCTCTAAACGT............................................................................ 28 0 20 2.40 48 44 0 4
..............CTAGACTCCTGATTACTGATATTCGACT............................................................................................................................ 28 0 1 1.00 1 1 0 0
................AGACTCCTGATTACTGATATTCGACT............................................................................................................................ 26 0 1 1.00 1 1 0 0
..............................................................GGACGTAGGAACGTTTTTCTCTAAAC.............................................................................. 26 0 20 1.00 20 20 0 0
......CCCAGAGACTAGACTCCTGATTACTGAT.................................................................................................................................... 28 0 1 1.00 1 1 0 0
...........................................TGGCGTCCATTTTGAGCGTGGAC.................................................................................................... 23 0 5 1.00 5 5 0 0
...............................GATATTCGACTGTGGCGTCCATT................................................................................................................ 23 0 1 1.00 1 1 0 0
..........................................GTGGCGTCCATTTTGAGCGTGGAC.................................................................................................... 24 0 4 0.75 3 3 0 0
............................................GGCGTCCATTTTGAGCGTGGAC.................................................................................................... 22 0 20 0.55 11 11 0 0
.TATGTCCCAGGGACTAGTC.................................................................................................................................................. 19 3 2 0.50 1 0 1 0
........................................................GAGCGTGGACGTAGGAACGTTTT....................................................................................... 23 0 20 0.35 7 6 0 1
.......................................................TGAGCGTGGACGTAGGAACGTTTTTCT.................................................................................... 27 0 20 0.30 6 6 0 0
........................................................GAGCGTGGACGTAGGAACGTTTTTCT.................................................................................... 26 0 20 0.30 6 5 0 1
........................................................GAGCGTGGACGTAGGAACGTTTTTCTCT.................................................................................. 28 0 20 0.25 5 5 0 0
.....................................................TTTGAGCGTGGACGTAGGAACGTTT........................................................................................ 25 0 20 0.25 5 5 0 0
.......................................ACTGTGGCGTCCATTTTGAGCGTGT...................................................................................................... 25 1 4 0.25 1 1 0 0
...........................................................CGTGGACGTAGGAACGTTTTTCTCT.................................................................................. 25 0 20 0.25 5 5 0 0
..........................................GTGGCGTCCATTTTGAGCGTGGA..................................................................................................... 23 0 4 0.25 1 1 0 0
............................................................GTGGACGTAGGAACGTTTTTCTCT.................................................................................. 24 0 20 0.20 4 4 0 0
..............................................................GGACGTAGGAACGTTTTTCTCTAAACG............................................................................. 27 0 20 0.20 4 4 0 0
...............................................................................................................................TTTGCCGAGGTGTGTGACGCT.................. 21 3 6 0.17 1 0 1 0
.........................................................AGCGTGGACGTAGGAACGTTTTTCTCT.................................................................................. 27 0 20 0.15 3 3 0 0
......................................................TTGAGCGTGGACGTAGGAACGTTT........................................................................................ 24 0 20 0.15 3 3 0 0
......................................................TTGAGCGTGGACGTAGGAACGTTTT....................................................................................... 25 0 20 0.15 3 3 0 0
.....................................................................GGAACGTTTTTCTCTAAACGTGAAT........................................................................ 25 0 20 0.15 3 3 0 0
......................................................TTGAGCGTGGACGTAGGAACGTTTTTCT.................................................................................... 28 0 20 0.15 3 3 0 0
.........................................................AGCGTGGACGTAGGAACGTTTT....................................................................................... 22 0 20 0.10 2 2 0 0
........................................................GAGCGTGGACGTAGGAACGTTT........................................................................................ 22 0 20 0.10 2 2 0 0
.......................................................TTTGCGTGGACGTAGGAACGT.......................................................................................... 21 2 20 0.10 2 2 0 0
.............................................................TGGACGTAGGAACGTTTTTCT.................................................................................... 21 0 20 0.10 2 2 0 0
..........................................................GCGTGGACGTAGGAACGTTTTTCTCT.................................................................................. 26 0 20 0.10 2 2 0 0
..........................................................GCGTGGACGTAGGAACGTTTTTCTC................................................................................... 25 0 20 0.05 1 1 0 0
..................................................................GTAGGAACGTTTTTCTCTAAACGTGAA......................................................................... 27 0 20 0.05 1 1 0 0
...................................TTCGACTGAGGCGTCCATTTTGAGCGT........................................................................................................ 27 1 20 0.05 1 1 0 0
........................................................................ACGTTTTTCTCTAAACGTGAAT........................................................................ 22 0 20 0.05 1 1 0 0
...............................................................GACGTAGGAACGTTTTTCTCTAAAC.............................................................................. 25 0 20 0.05 1 1 0 0
......................................................TTGAGCTTGGACGTAGGAACGTTTT....................................................................................... 25 1 20 0.05 1 1 0 0
..........................................................................GTTTTTCTCTAAACGTGAAT........................................................................ 20 0 20 0.05 1 1 0 0
................................................................ACGTAGGAACGTTTTTCTCTAAACGT............................................................................ 26 0 20 0.05 1 1 0 0
..........................................................GCGTGGACGTAGGAACGT.......................................................................................... 18 0 20 0.05 1 1 0 0
...............................................................AACGTAGGAACGTTTTTCT.................................................................................... 19 1 20 0.05 1 1 0 0
............................................................TTGGACGTAGGAACGTTTTT...................................................................................... 20 1 20 0.05 1 1 0 0
............................................GGCGTCCATTTTGAGCGTGGACGT.................................................................................................. 24 0 20 0.05 1 1 0 0
........................................................................ACGTTTTTCTCTAGACGTGAAT........................................................................ 22 1 20 0.05 1 1 0 0
.......................................................TGAGCGTGGACGTAGGAACGT.......................................................................................... 21 0 20 0.05 1 1 0 0
.................................................CCATTTTGAGCGTGGACGTAGGAACGTT......................................................................................... 28 0 20 0.05 1 1 0 0
...................................................ATTTTGAGCGTGGACGTAGGAACGTTT........................................................................................ 27 0 20 0.05 1 1 0 0
.......................................................TGAGCGTGGACGTAGGAAGGTTTTTCT.................................................................................... 27 1 20 0.05 1 1 0 0
...................................................................................................................AACGAGTGACTCTTAGACGAGGT............................ 23 1 20 0.05 1 1 0 0
.....................................................................................................................CGAGTGACTCTTAGACGAGGT............................ 21 0 20 0.05 1 1 0 0
.........................................................AGCGTGGACGTAGGAACGTTTTTCTC................................................................................... 26 0 20 0.05 1 1 0 0
...............................................................GACGTAGGAACGTTTTTCTCTAAACGG............................................................................ 27 1 20 0.05 1 1 0 0
..........................................................GCGTGGACGTAGGAACGTTTTTCT.................................................................................... 24 0 20 0.05 1 1 0 0
..............................................................GGACGTAGGAACGTTTTTCTCTAA................................................................................ 24 0 20 0.05 1 1 0 0
..............................................................GGACGTAGGAACGTTTTTCTCTAAACGTC........................................................................... 29 1 20 0.05 1 1 0 0
.............................................................TGGACGTAGGAAAGTTTTTCTCT.................................................................................. 23 1 20 0.05 1 0 0 1
...................................................................................................................CACGAGTGACTCTTAGACG................................ 19 0 20 0.05 1 1 0 0
........................................................GAGCGTGGACGTAGGAACGTT......................................................................................... 21 0 20 0.05 1 1 0 0
.....................................................TTTGAGCGTGGACGTAGGAACGTTTT....................................................................................... 26 0 20 0.05 1 1 0 0
...................................................................................................................CACGAGTGACTCTTAGACGAGGT............................ 23 0 20 0.05 1 1 0 0
.................................................CCATTTTGAGCGTGGACGTAGGAAC............................................................................................ 25 0 20 0.05 1 1 0 0
....................................................................................................................ACGAGTGACTCTTAGACGAGGTG........................... 23 0 20 0.05 1 1 0 0
.............................................GCGTCCATTTTGAGCGTGGAC.................................................................................................... 21 0 20 0.05 1 1 0 0
..............................................................GGACGTATGAACGTTTTTCTCTAAACGT............................................................................ 28 1 20 0.05 1 1 0 0
.......................................................TGAGCGTGGACGTAGGAACGTTTTT...................................................................................... 25 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_77:45874-46039 - dpe_2082 GAAACAG---GGTCTCTGATCTGAGGACTAATGACTATAAGCTG----------ACACCGCAGGTAAAACTCGCACCTGCATCCTTGCAAAAAGAGATTTGCACTTATTTTTGCTTCCGAATTTCT-CAGTGCTCACTGAGAATCTGCT----CC-A---C--------AGACTGCGAG------GCCAAGGCGACTGTG---CT
dp5 Unknown_singleton_2413:780-961 + GAAACAG---GATCTCTGGTCTGAGGAGTCCTGACTATAAGCTATACGTAGCTGACACCGCAGGTAAAACCCGCACCTGCATTCTTGCAAAAAGAGATTTGCACTAATTTTTGCTCCCAAATTTCAGCAATGAAGACCAAACAGCACAGGGCGCTGATCAC--------AGACTGCGAG------GCCAAGGACAC---C---GG
droGri2 scaffold_3023:1567-1752 + GAGGCAA---GGTTTGCGGACTAGTAAATAAAGATTATAAGCTCTAAGTAGCTGGAAATGAAGGTAAAAAACGCACCTGCATCCTCGCTAGAAAATATTTAAATATTTTTCTGCTTCATAATTTTAGCAATGCCGACAACACAGCGGTAA---GC-C---TGGAGCTCCAGTC------AGCTACGGTAAGGCTACTGTC---TG
droAna3 scaffold_13089:164542-164713 - GAGACAG---GATTCTTGGTTTGGGGACGTCGGAATTCAGGCTA-----------TGTAACAGGTAAAAAGCGAGCATGCATTCTCGCAAAAAAGAGCCTTAACATTTTCTTGCTACCAAATTTCAGCAATGAAGATCATGTAGCCGCA----TCGA---TAGAAGGCCAAGG------CGGCCATCTAAGAATAT---G---CT
droBip1 scf7180000395163:17534-17698 - GAAATACTTTGGTTGGGGG--------CCTCGGAGTAAA-----------GCCGATACAACAGGTAAAA-GCGAGCCTGCTTCCTCGCAAAATAGAATTTTAACCTATTTCTGCTACCTAATTTCAGCAATGAAGATTATGTAGCCGCA----GC-A---TAGAGAGCCCGAA------GGGGACTCTAAGGGTAT---G---CT
droEle1 scf7180000489666:21761-21880 + GAGGCAA---GGTCTATGGACTAGGCACCAAGGAATTCAAGTTGCTACTTGACCCTAAAGGAGGTAAAATTCAAACCTGCATTTTAGCCAAAAGGCACCTTAGCATATATCTGCTTCATAATT----------------------------------------------------------------------------------
droRho1 scf7180000766519:4643-4762 + GAGGCAG---GGTTGCTGGACTAGGAACAAAAGATTACAAGCTTAAGCTTGACCCCAAACAAGGTAAAATTCGAACCTGCATTATAGCCAAACGGCATTTTAGTACATTTCTGCTTCGCAATT----------------------------------------------------------------------------------
droTak1 scf7180000410974:1974-2162 - GAGGCAA---GGTTGCTGGACTAGGAACGAGAGAGTATAAGCTAATGCTTGACCCCAAAGAAGGTAAAATTCGAACCTGCATTTTGGCCAAAAGGCACCTAAATATATTTCTGCTTCGCAATTACAGCAACGGAGATAACACCTCAGTAA---GC-C---TGGAGCTGCAGCA------CGGCTCCGTTAGGCTGCTATCGGCCT
droYak3 v2_chrX_random_046:77961-78080 + GAGGAAA---GGTTTCAGGATTAGGGACTAAGGAATATAAGCTTCTCACAGCTCCCAGCGAAGGTAAAATAAGGGCCTGCATTTTAGCCAAAAAGCACCTTAGCATTTTTCTGCTTCATAATT----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GAAACAG---GGTCTCTGATCTGAGGACTAATGACTATAAGCTG----------ACACCGCAGGTAAAACTCGCACCTGCATCCTTGCAAAAAGAGATTTGCACTTATTTTTGCTTCCGAATTTCT-CAGTGCTCACTGAGAATCTGCT----CC-A---C--------AGACTGCGAG------GCCAAGGCGACTGTG---CTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................CC-A---C--------AGACTGCGAG------GCCAAGGCGACTG.......2711.001010000
............................................................................................................................................................A---C--------AGACTGCGAG------GCCAAGGCGACT........2411.001010000
.........................................................................................................................................................CC-A---C--------AGACTGCGAG------GCCAAGG.............2111.001010000
.....................TGAGGACTAATGACTATAAGCTG----------ACA....................................................................................................................................................2611.001010000
.....................TGAGGACTAATGACTATAAGCTG----------ACACC..................................................................................................................................................2811.001010000
.........................................................................................................................................................CC-A---C--------AGACTGCGAG------GCCAAGGCGA..........2411.001010000
..........................................................................................................................................................C-A---C--------AGACTGCGAG------GCCAAGG.............20200.357070000
..................................................................AAACTCGCACCTGCATCCTTGC.....................................................................................................................22200.102020000
..............................................................GGTAAAACTCGCACCTGCATCCT........................................................................................................................23200.051100000
...................................................................AACTCGCACCTGCATCCTTGCAAAA.................................................................................................................25200.051010000
.....................................................................CTCGCACCTGCATCCTTGCAAAAA................................................................................................................24200.051010000
................................................................TAAAACTCGCACCTGCATCCT........................................................................................................................21200.051010000
.........................................................................CACCTGCATCCTTGCAAAAAGAGATT..........................................................................................................26200.051010000
...............................................................GTAAAACTCGCACCTGCATCCTTG......................................................................................................................24200.051010000
.................................................................AAAACTCGCACCTGCATCCTTG......................................................................................................................22200.051010000
..................................................................................................................................TGCTCACTGAGAATCTGCT----C...................................................20200.051010000
.......................................................................CGCACCTGCATCCTTGCAAAAAG...............................................................................................................23200.051010000
dp5
GAAACAG---GATCTCTGGTCTGAGGAGTCCTGACTATAAGCTATACGTAGCTGACACCGCAGGTAAAACCCGCACCTGCATTCTTGCAAAAAGAGATTTGCACTAATTTTTGCTCCCAAATTTCAGCAATGAAGACCAAACAGCACAGGGCGCTGATCAC--------AGACTGCGAG------GCCAAGGACAC---C---GGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---......2412114.17137009978811000262120
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACA..........2312111.6713401107414060223580
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGAC...........221379.2310301768113070312981
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---..251162.55688045798030112450
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGA............211337.084820414915134540
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---GG271131.1834302005000013710
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---G.261129.823280222701029150
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGG.............201321.542800242801706700
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAA---......241212.00144013430101500
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGAC...........23138.851150901500001000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACA..........22128.6710409800000600
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---......23128.5810309320000800
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACA..........24128.50102086100011400
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACAC---......25126.25750431000002020
..........................................................................................................................TTCAGCAATGAAGACCAAACAGC............................................................23155.8788074130000010
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGAC...........21135.697407030000100
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGA............22135.387006810100000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGAA...........22155.007507120001100
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---C---..24114.915405200100100
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAT---......24144.576415700000510
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGA............20134.085304700021300
.............................CCTGACTATAAGCTATACGTAGC.........................................................................................................................................................23163.3153037131000200
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGACAC---C---..23133.1541013200001880
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGG.............21133.084003910000000
..........................................................................................................................TTCAGCAATGAAGACCAAACAGCA...........................................................24153.004503700001520
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAG..............19133.003903520001010
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGACAC---......22162.81450201000013110
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---C---GG26112.552802100000610
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGACAC---C---GG25132.5433013010001540
.............................CCTGACTATAAGCTATACGTAG..........................................................................................................................................................22172.123603300100020
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGACAC---C---G.24132.0827014100001110
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---A---..25122.002401320001800
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACAC---C---..26112.002201620000400
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---C---G.25111.822001700000210
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGACA..........21171.763002410000320
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGG.............19131.542001900010000
..........................................................................................................................................................TGATCAC--------AGACTGCGAG------GCCAAGGAC...........2621.5030000000030
..........................................................................................................................TTCAGCAATGAAGACCAAACAG.............................................................22171.472502100000220
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACG..........23121.33160800000440
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAA---......23121.251501410000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAA---A---..25121.171401400000000
..................................................................................................................................TGAAGACCAAACAGCACAGGGCGCC..................................................2521.0020000000020
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---GT27111.00110600000500
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGT............21130.6990900000000
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGAC...........20190.68130710100310
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACT..........23120.6780700010000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACAA---......25120.6780800000000
...........................................................................................................................TCAGCAATGAAGACCAAACAGC............................................................22150.671001000000000
............................TCCTGACTATAAGCTATACGTAG..........................................................................................................................................................23170.651101100000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---A.26110.6470600000100
............................TCCTGACTATAAGCTATACGTAGC.........................................................................................................................................................24160.63100900000100
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACC..........23120.5871200000040
.............................CCTGACTATAAGCTATACGTAGCT........................................................................................................................................................24160.5690700000200
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAG..............20130.5470700000000
..........................................................................................................................................................TGATCAC--------AGACTGCGAG------GCCAAGGACAC---......2820.5010010000000
..........................................................................................................................................................TGATCAC--------AGACTGCGAG------GCC.................2020.5010010000000
..........................................................................................................................................................TGATCAC--------AGACTGCGAG------GCCAAGG.............2420.5010100000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGAA...........21150.4770700000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAA...............18130.4660500100000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGA.............20130.4660500100000
.........................................................................................................................................................................AGACTGCGAG------GCCAAGGACAC---......21160.4470600000010
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAA---A---A.26120.4250410000000
..............................CTGACTATAAGCTATACGTAG..........................................................................................................................................................21200.4080800000000
............................................................................................................................................................ATCAC--------AGACTGCGAG------GCCAAG..............21130.3850301001000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACAC---C---G.27110.3640400000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGAA...........23150.3350400100000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---A---A.26120.3340400000000
...........................................................................................................................TCAGCAATGAAGACCAAACAGCA...........................................................23150.3350500000000
.............................CCTGACTATAAGCTATACGTAGCTG.......................................................................................................................................................25130.3140400000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGT.............20130.3140400000000
............................................................................................................................................................ATCAC--------AGACTGCGAG------GCCAAGG.............22130.3140400000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACGT---......24140.2940100001020
..........................................................................................................................TTCAGCAATGAAGACCAAACA..............................................................21180.2850400000100
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACAC---C---GG28110.2730300000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---C---A.25110.2730300000000
.........................................................................................................................................................................AGACTGCGAG------GCCAAGGAC...........19190.2650500000000
.............................CCTGACTATAAGCTATACGTAGCTGAC.....................................................................................................................................................27120.2530300000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAA---A---..24120.2530300000000
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGACAA---......22170.2440310000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAAA.............20130.2330300000000
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGACAC---C---GT25130.2330000000300
.............................................................................................................................................................................TGCGAG------GCCAAGGACAC---C---G.19130.2330000001020
............................................................................................................................................................................CTGCGAG------GCCAAGGACAC---C---G.20130.2330100020000
............................................................................................................................................................ATCAC--------AGACTGCGAG------GCCAAGGAC...........24130.2330210000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAG..............18130.2330300000000
.............................CCTGACTATAAGCTATACGTAGCTGA......................................................................................................................................................26130.2330300000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGAT...........22130.2330200001000
.........................................................................................................................................................................AGACTGCGAG------GCCAAGGACAC---C---GG24130.2330200000100
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAT---......23140.2130200000100
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAT---A---..25140.2130300000000
..............................CTGACTATAAGCTATACGTAGC.........................................................................................................................................................22190.2140400000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAC..............19150.2030000000300
........................................................ACCGCAGGTAAAACCCGCACCTGA.............................................................................................................................2450.2010100000000
..........................................................................................................................TTCAGCAATGAAGACCAAACAGCC...........................................................24160.1930300000000
.......................................................................................................................AATTTCAGCAATGAAGACCAAACA..............................................................24160.1930100000020
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---C.26110.1820200000000
.............................CCTGACTATAAGCTATACG.............................................................................................................................................................19170.1830300000000
............................TCCTGACTATAAGCTATACGT............................................................................................................................................................21170.1830300000000
............................TCCTGACTATAAGCTATACGTA...........................................................................................................................................................22170.1830300000000
...........................................................................................................................TCAGCAATGAAGACCAAACAG.............................................................21170.1830300000000
..........................................................................................................................TTCAGCAATGAAGACCAAACAGA............................................................23170.1830100000200
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---A---..24120.1720200000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACT..........24120.1720000000200
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACTA---......24120.1720110000000
............................................................................................................................................................ATCAC--------AGACTGCGAG------GCCAAGGACA..........25120.1720200000000
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGG.............18190.1630300000000
................................................................................................................................................................C--------AGACTGCGAG------GCCAAGGA............19190.1630200000010
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAA..............19130.1520200000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAAA.............21130.1520200000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGA.............19130.1520200000000
............................................................................................................................................................ATCAC--------AGACTGCGAG------GCCAAGGA............23130.1520200000000
.........................................................................................................................................................................AGACTGCGAG------GCCAAGGACAC---C---G.23130.1520200000000
............................................................................................................................................................................CTGCGAG------GCCAAGGACAC---C---GG21130.1520200000000
............................TCCTGACTATAAGCTATACGTAGCTGA......................................................................................................................................................27130.1520200000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGAAT..........23140.1420200000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACGT---A---..25140.1420200000000
..........................................................................................................................................................................GACTGCGAG------GCCAAGGACAC---......20160.1320200000000
.............................CCTGACTATAAGCTATACGTAGCC........................................................................................................................................................24160.1320020000000
............................TCCTGACTATAAGCTATACG.............................................................................................................................................................20170.1220200000000
.............................CCTGACTATAAGCTATACGT............................................................................................................................................................20170.1220200000000
..........................................................................................................................TTCAGCAATGAAGACCAAAC...............................................................20180.1120200000000
..............................................CGTAGCTGACACCGCAGGTAAAAC.......................................................................................................................................2490.1110100000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---T.26110.0910100000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---C---AA27110.0910100000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---C---GT26110.0910100000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---C---GA26110.0910100000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAC---G---..24120.0810100000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGACAC---A---AA27120.0810100000000
............................................................................................................................................................ATCAC--------AGACTGCGAG------GCCAAGGACAA---......26120.0810100000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACGA---G---..26120.0810000000100
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACAC---A---..26120.0810100000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACG..........24120.0810100000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGACAA---A---..26120.0810100000000
...............................................................................................................................................................AC--------AGACTGCGAG------GCCAAGGACAA---A---A.25120.0810100000000
..........................................................................................................................................................................GACTGCGAG------GCCAAGGACAC---C---..21130.0810010000000
...........................................................................................................................................................................ACTGCGAG------GCCAAGGACAC---C---G.21130.0810100000000
..............................................................................................................................................................CAC--------AGACTGCGAG------GCCAAGGG............21130.0810100000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGT.............21130.0810100000000
.............................................................................................................................................................TCAC--------AGACTGCGAG------GCCAAGGT............22130.0810100000000
droGri2
GAGGCAA---GGTTTGCGGACTAGTAAATAAAGATTATAAGCTCTAAGTAGCTGGAAATGAAGGTAAAAAACGCACCTGCATCCTCGCTAGAAAATATTTAAATATTTTTCTGCTTCATAATTTTAGCAATGCCGACAACACAGCGGTAA---GC-C---TGGAGCTCCAGTC------AGCTACGGTAAGGCTACTGTC---TGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................GGACTAGTAAATAAAGATTATAAGC...................................................................................................................................................................25200.05101
droAna3
GAGACAG---GATTCTTGGTTTGGGGACGTCGGAATTCAGGCTA-----------TGTAACAGGTAAAAAGCGAGCATGCATTCTCGCAAAAAAGAGCCTTAACATTTTCTTGCTACCAAATTTCAGCAATGAAGATCATGTAGCCGCA----TCGA---TAGAAGGCCAAGG------CGGCCATCTAAGAATAT---G---CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............TTCTTGGTTTGGGGACGTCG.............................................................................................................................................................................2020.501100000
.........................................................TAACAGGTAAAAAGCGAGCATGCATT..........................................................................................................................26200.204220000
.........................................................TAACAGGTAAAAAGCGAGCATGCATTC.........................................................................................................................27200.153300000
.....AG---GATTCTTGGTTTGGGG...................................................................................................................................................................................18150.071010000
..........................................................................................................................TTCAGCAATGAAGATCATGTAGC............................................................23200.051001000
.........................................................TAACAGGTAAAAAGCGAGCATGCA............................................................................................................................24200.051001000
...................................................................................................................................................CA----TCGA---TAGAAGGCCAAGG------CGGCCAT...................26200.051100000
......................................................................................................................................................................GCCAAGG------CGGCCATCTAAGAATAT---G---CC27200.051010000
..............................................................................................................................................AGCCGCA----TCGA---TAGAAGGCCAAGG------C.........................25200.051000001
..................................................................................................................................................GCA----TCGA---TAGAAGGCCAAGG------C.........................21200.051000001
........................................................................................................................................TCATGTAGCCGCA----TCGA---TAGA.........................................21200.051000010
...............................................................................................................................................GCCGCA----TCGA---TAGAAGGCCAAGG------..........................23200.051100000
.................................................................................................................................ATGAAGATCATGTAGCCGCA----TCGA---T............................................25200.051010000
...................................................................................................................................................CA----TCGA---TAGAAGGCCAAGG------CGG.......................22200.051100000
.................................................................................................................................ATGAAGATCATGTAGCCGCA----TCGA---TA...........................................26200.051010000
...............................................................................................................................CAATGAAGATCATGTAGCCG..........................................................20200.051000010
..........................................................AACAGGTAAAAAGCGAGCATGCA............................................................................................................................23200.051000010
..........................................................................................................................TTCAGCAATGAAGATCATGTAGCCG..........................................................25200.051100000
droBip1
GAAATACTTTGGTTGGGGG--------CCTCGGAGTAAA-----------GCCGATACAACAGGTAAAA-GCGAGCCTGCTTCCTCGCAAAATAGAATTTTAACCTATTTCTGCTACCTAATTTCAGCAATGAAGATTATGTAGCCGCA----GC-A---TAGAGAGCCCGAA------GGGGACTCTAAGGGTAT---G---CTSizeHit CountTotal NormTotal
No Reads
droEle1
GAGGCAA---GGTCTATGGACTAGGCACCAAGGAATTCAAGTTGCTACTTGACCCTAAAGGAGGTAAAATTCAAACCTGCATTTTAGCCAAAAGGCACCTTAGCATATATCTGCTTCATAATT----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GAGGCAG---GGTTGCTGGACTAGGAACAAAAGATTACAAGCTTAAGCTTGACCCCAAACAAGGTAAAATTCGAACCTGCATTATAGCCAAACGGCATTTTAGTACATTTCTGCTTCGCAATT----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAGGCAA---GGTTGCTGGACTAGGAACGAGAGAGTATAAGCTAATGCTTGACCCCAAAGAAGGTAAAATTCGAACCTGCATTTTGGCCAAAAGGCACCTAAATATATTTCTGCTTCGCAATTACAGCAACGGAGATAACACCTCAGTAA---GC-C---TGGAGCTGCAGCA------CGGCTCCGTTAGGCTGCTATCGGCCTSizeHit CountTotal NormTotal
No Reads
droYak3
GAGGAAA---GGTTTCAGGATTAGGGACTAAGGAATATAAGCTTCTCACAGCTCCCAGCGAAGGTAAAATAAGGGCCTGCATTTTAGCCAAAAAGCACCTTAGCATTTTTCTGCTTCATAATT----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................AGCGAAGGTAAAATAAGGGCCTGCA............................................................................................................................2530.33101000000000
..........GGTTTCAGGATTAGGGACTAAGGA...........................................................................................................................................................................24200.10202000000000
....................TTAGGGACTAAGGAATATAAG....................................................................................................................................................................21200.05100000010000
......A---GGTTTCAGGATTAGGGACTAAG.............................................................................................................................................................................23200.05101000000000
........................................................................................CAAAAAGCACCTTAGCATTTTTCTGC...........................................................................................26200.05100100000000
.............TTCAGGATTAGGGACTAAGGAATATA......................................................................................................................................................................26200.05101000000000
GAGGAAA---GGTTTCAGGATTAGGGAA.................................................................................................................................................................................25200.05101000000000

Generated: 06/08/2015 at 05:10 PM