ID:

dpe_2078

 Coordinate:

scaffold_76:228336-228486 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-58.3 -57.4

Flybase annnotation

exon [dper_GLEANR_7988:2]; CDS [Dper\GL25474-cds]; intron [Dper\GL25474-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCATCTGCGAAAGTCGTTCCACCGTCTCGAGGCAGCAAGCGCTGTGAGGAGAACTCCGAAAAGCCAATCGGGGCAATCCCCGGTTACCGGGGTGGGTGCCATACAGAGCGATATCGCGGCTGGCAGACCCCTTGGGCCGGGGACCCGTTCAAAACCCCGCCAGGTGGCGTTTCAGCCTCGAAAGATAGGTCCAAGTTCTAGGAGAAGAGACGTGCGGCCTTCATCCTGGGCAACGATGATCCGGTGCTCCT
**************************************************(((((..((........(((((((..((((((((..((((((.((.(((((......(((....)))...)))))..))))))))))))))))..............((((....)))).....)))))))........))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body
.....................................................................................................................................................................................................................................GCAACGATGATCCGGTGC.... 18 0 1 3.00 3 0 3 0
..............................................................................................................................................................................................CCAAGTTCTAGGAGAAGAGACGT...................................... 23 0 1 2.00 2 2 0 0
......................................................................................................ACAGAGCGATATCGCGGCTGGCAGA............................................................................................................................ 25 0 1 1.00 1 1 0 0
..............................................AGGAGAACTCCGAAAAGCC.......................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0
..............................................................................................................................................................................................CCAAGTTCTAGGAGAAGAGACGTGC.................................... 25 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................CAAGTTCTAGGAGAAGAGACGTG..................................... 23 0 1 1.00 1 1 0 0
.................TCCACCGTCTCGAGGCAGCAAGCGC................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................CAAGTTCTAGGAGAAGAGACA....................................... 21 1 1 1.00 1 1 0 0
..............................................................................................................................................................................................CCAAGTTCTAGGAGAAGAGACGTG..................................... 24 0 1 1.00 1 1 0 0
............................................TGAGGAGAACTCCGAAAAGCCAATC...................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
....................ACCGTCTCGAGGCAGCAAGCGC................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0
.............................................................................................................GATATCGCGGCTGGCAGACCCCTTGGAC.................................................................................................................. 28 1 1 1.00 1 0 1 0
....................................................................................TACCGGGGTGGGTGCCATACAGAAA.............................................................................................................................................. 25 2 1 1.00 1 1 0 0
...................................................................................................................................................................................................................GTGCGGCCTTCATCCTGG...................... 18 0 20 0.25 5 5 0 0
................................................................................................................................................................................................AAGTTCTAGGAGACGCGACC....................................... 20 3 12 0.08 1 1 0 0
..............................................................................................................................................................................................................GAGACGTGCGGCCTTCATCCTGG...................... 23 0 13 0.08 1 1 0 0
.......................................................................................................CAGAGCGATATCGCGGCTGGC............................................................................................................................... 21 0 20 0.05 1 1 0 0
....................................................................................................................................................................................................................TGCGGCCATCATCCTGGGCAACGA............... 24 1 20 0.05 1 1 0 0
...........................................................................................GTGGGTGGCATACAGGGCA............................................................................................................................................. 19 3 20 0.05 1 0 0 1

Anti-sense strand reads

CGTAGACGCTTTCAGCAAGGTGGCAGAGCTCCGTCGTTCGCGACACTCCTCTTGAGGCTTTTCGGTTAGCCCCGTTAGGGGCCAATGGCCCCACCCACGGTATGTCTCGCTATAGCGCCGACCGTCTGGGGAACCCGGCCCCTGGGCAAGTTTTGGGGCGGTCCACCGCAAAGTCGGAGCTTTCTATCCAGGTTCAAGATCCTCTTCTCTGCACGCCGGAAGTAGGACCCGTTGCTACTAGGCCACGAGGA
**************************************************(((((..((........(((((((..((((((((..((((((.((.(((((......(((....)))...)))))..))))))))))))))))..............((((....)))).....)))))))........))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V057
head
..............................................................................................................................................................................CGGAGCTTTCTATCCAGGTTCAAGAT................................................... 26 0 1 157.00 157 87 69 1 0
...............................................................................................................................................................................GGAGCTTTCTATCCAGGTTCAAGAT................................................... 25 0 1 33.00 33 18 13 2 0
.......................................................................................................................................................................................................................CCGGAAGTAGGACCCGTTGCTACT............ 24 0 1 14.00 14 14 0 0 0
........................................................................................................................................................................................................................CGGAAGTAGGACCCGTTGCTACT............ 23 0 1 11.00 11 10 0 1 0
.........................................................................................................................................................................................................................GGAAGTAGGACCCGTTGCTACT............ 22 0 1 9.00 9 9 0 0 0
..............................................................................................................................................................................CGGAGCTTTCTATCCAGGTTCAAGA.................................................... 25 0 1 9.00 9 9 0 0 0
.............................................................................................................................................................................TCGGAGCTTTCTATCCAGGTTCAAGAT................................................... 27 0 1 9.00 9 4 5 0 0
...............................................................................................................................................GGGCAAGTTTTGGGGCGGTCCACCGC.................................................................................. 26 0 1 5.00 5 5 0 0 0
................................................................................................................................................................................GAGCTTTCTATCCAGGTTCAAGAT................................................... 24 0 1 4.00 4 1 3 0 0
.......................................................................................................................................................................................................................CCGGAAGTAGGACCCGTTGCTAC............. 23 0 1 4.00 4 1 3 0 0
............................................................................................................................................................................GTCGGAGCTTTCTATCCAGGTTCAAGAT................................................... 28 0 1 4.00 4 3 1 0 0
.....................................................................................................................................................GTTTTGGGGCGGTCCACCGCAAAGT............................................................................. 25 0 1 3.00 3 3 0 0 0
.......................................................................................................................................................................................CTATCCAGGTTCAAGATCCTCTTCTCT......................................... 27 0 1 3.00 3 0 3 0 0
......................................................................................................................................................................................TCTATCCAGGTTCAAGATCCTCTTCT........................................... 26 0 1 3.00 3 3 0 0 0
...........................................................................................................................................................................................CCAGGTTCAAGATCCTCTTCTCTGCACGC................................... 29 0 1 3.00 3 0 3 0 0
.......GCTTTCAGCAAGGTGGCAGAGCTCCGT......................................................................................................................................................................................................................... 27 0 1 3.00 3 0 3 0 0
...........................................................................................CACCCACGGTATGTCTCGCTATAGC....................................................................................................................................... 25 0 1 2.00 2 0 2 0 0
..................................................................TAGCCCCGTTAGGGGCCAATGGCCC................................................................................................................................................................ 25 0 1 2.00 2 0 2 0 0
..................................................................................................................................................................................GCTTTCTATCCAGGTTCAAGAT................................................... 22 0 1 2.00 2 0 2 0 0
...............................................................................................................................................................................GGAGCTTTCTATCCAGGTTCAAGA.................................................... 24 0 1 2.00 2 2 0 0 0
................................................................................................................................................GGCAAGTTTTGGGGCGGTCCACC.................................................................................... 23 0 1 2.00 2 2 0 0 0
.....................................................GAGGCTTTTCGGTTAGCCCCGT................................................................................................................................................................................ 22 0 1 2.00 2 1 0 1 0
........................................................................................................................................................................................................................CGGAAGTAGGACCCGTTGCTAC............. 22 0 1 2.00 2 2 0 0 0
...............................................................................................................................................TGGCAAGTTTTGGGGCGGTCCACCGC.................................................................................. 26 1 1 2.00 2 2 0 0 0
...............................................................................................................................................................................GGAGCTTTCTATCCAGGTTCAAGATC.................................................. 26 0 1 2.00 2 0 2 0 0
..............................................................................................................................................................................CGGCGCTTTCTATCCAGGTTCAAGAT................................................... 26 1 1 2.00 2 0 2 0 0
.............................................................................................CCCACGGTATGTCTCGCTAT.......................................................................................................................................... 20 0 1 2.00 2 0 2 0 0
...........................................................................................CACCCACGGTATGTCTCGCTATAGCGCCG................................................................................................................................... 29 0 1 2.00 2 0 2 0 0
.....................................................................................................................................................................................................................CGCCGGAAGTAGGACCCGTTGCTACT............ 26 0 1 2.00 2 2 0 0 0
..................................................CTTGAGGCTTTTCGGTTAGCCCCGT................................................................................................................................................................................ 25 0 1 2.00 2 1 0 0 1
...........................................................................................................................................................................................CCAGGTTCAAGATCCTCTTCTCTGCAC..................................... 27 0 1 2.00 2 0 2 0 0
..............................................................................................................................................................................................................................TAGGACCCGTTGCTACTAGGCCACG.... 25 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................ACGCCGGAAGTAGGACCCGTTGCTACT............ 27 0 1 1.00 1 1 0 0 0
...............................................................................................CACGGTATGTCTCGCTATAGCGCCG................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.............................................................................................................................................CTGGGCTAGTGTGGGGGCGGTC........................................................................................ 22 3 1 1.00 1 0 0 0 1
..............................................................................................................................................................................CGGAGCTTTCTATCCAGCTTCAAGAT................................................... 26 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................GAAGTAGGACCCGTTGCTACT............ 21 0 1 1.00 1 1 0 0 0
..................................................................................................................................................CAAGTTTTGGGGCGGTCCACCGC.................................................................................. 23 0 1 1.00 1 1 0 0 0
................................................................................GCCAATGGCCCCACCCACGGTATGTCT................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................TGCCGGAAGTAGGACCCGTTGCTACT............ 26 1 1 1.00 1 0 0 1 0
.................................................................................CCAATGGCCCCACCCACGGTATGTCT................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0
..............................................................................................................................................................................CAGAGCTTTCTATCCAGGTTCAAGAT................................................... 26 1 1 1.00 1 0 1 0 0
.....................................................................................................ATGTCTCGCTATAGCGCCGACCGT.............................................................................................................................. 24 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................TTTCTATCCAGGTTCAAGATCCTCTT............................................. 26 0 1 1.00 1 1 0 0 0
........................................................................................................................ATCGTCTGGGGAACCCGGCCCC............................................................................................................. 22 1 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................CCAGGTTCAAGATCCTCTTCTCTG........................................ 24 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................CTTTCTATCCAGGTTCAAGATCCTCTT............................................. 27 0 1 1.00 1 0 1 0 0
..........TTCAGCAAGGTGGCAGAGCTCCGT......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................CGCCGGAAGTAGGACCTGTTGCTAC............. 25 1 1 1.00 1 1 0 0 0
........................................CGACACTCCTCTTGAGGCTTTTCGGT......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0
.....................................................................................................................................................................................................................CGCCGGAAGTAGGACCCATTGCTACT............ 26 1 1 1.00 1 1 0 0 0
.............................................................................................CCCACGGTATGTCTCGCTATAGCGCCG................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................GTCGGAGCTTTCTATCCAGGTTCAAGA.................................................... 27 0 1 1.00 1 1 0 0 0
...............................................................................................................................................GGGCAAGTTTTGGGGCGGTCCACCG................................................................................... 25 0 1 1.00 1 1 0 0 0
.............................................................................................CCCACGGTATGTCTCGCTATAGCGCC.................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
..................................................................................................................................................AAAGTTTTGGGGCGGTCCACCGC.................................................................................. 23 1 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................CCTCTTCTCTGCACGCCGGA............................... 20 0 1 1.00 1 1 0 0 0
...........TCAGCAAGGTGGCAGAGCTCCGT......................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
........................................................................................................................................................TTGGGGCGGTCCACCGCAAAG.............................................................................. 21 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................ACGGAGCTTTCTATCCAGGTTCAAGAT................................................... 27 1 1 1.00 1 1 0 0 0
...................................................TTGAGGCTTTTCGGTTAGCCCCGT................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
............................................................................................ACCCACGGTATGTCTCGCTAT.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
........CTTTCAGCAAGGTGGCAGAGCTCC........................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
......................................................................................GGCCCCACCCACGGTATGTCTCGCTAT.......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.......ACTTTCAGCAAGGTGGCAGAGCT............................................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................GGGGCGGTCCACCGCAAAGTCGGAG........................................................................ 25 0 1 1.00 1 0 0 1 0
....................................................................................................................................................................................TTTCTATCCAGGTTCAAGATCCT................................................ 23 0 1 1.00 1 1 0 0 0
..............................................................................................CCACGGTATGTCTCGCTATAGCGCCGA.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
........................................................................................CCCCACCCACAGTATGTCTCGCTAT.......................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
................................................................................................................................................GGCAAGTTTTGGGGCGGTCCACCGCA................................................................................. 26 0 1 1.00 1 1 0 0 0
....................................................TGAGGCTTTTCGGTTAGCCCCGTT............................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................AGCTTTCTATCCAGGTTCAAGAT................................................... 23 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................................CAGGTTCAAGATCCTCTTCT........................................... 20 0 1 1.00 1 1 0 0 0
..............................................................................................CCACGGTATGTCTCGCTATAGCGCC.................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................GGTTCAAGATCCTCTTCTCTGCACGC................................... 26 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................CGGAGCCTTCTATCCAGGTTCAAGAT................................................... 26 1 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................GCCGGAAGTAGGACCCGTTGCTACT............ 25 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................CCACCGCAAAGTCGGAGCTTTCTAT................................................................ 25 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................ATTTCTATCCAGGTTCAAGATCCT................................................ 24 1 1 1.00 1 1 0 0 0
..........................................................................................CCACCCACGGTATGTCTCGCT............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................GTAGGACCCGTTGCTACTAGGC........ 22 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................AAAGTCGGAGCTTTCTATCCAGGTT......................................................... 25 0 1 1.00 1 0 1 0 0
...............................................................................GGCCAATGGCCCCACCCACGGTATGTCT................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................AAAGTCGGAGCTTTCTATCCAGGT.......................................................... 24 0 1 1.00 1 1 0 0 0
............................................................................................................................................................GGCGGTCCACCGCAAAGTCGGAG........................................................................ 23 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................TGGGGCGGTCCACCGCAAAGTCGGAG........................................................................ 26 0 1 1.00 1 1 0 0 0
..................................................................................................................................................CAAGTTTTGGGGCGGTCCACCGCAAAGT............................................................................. 28 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................GAGCTTTCTATCCAGGTTCAAGA.................................................... 23 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................GGACCCGTTGCTACTAGGCCACG.... 23 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................TAGGACCCGTTGCTACTAGGC........ 21 0 1 1.00 1 1 0 0 0
.............................................................................................TCCACGGTATGTCTCGCTATAGCGCC.................................................................................................................................... 26 1 1 1.00 1 0 1 0 0
..................................CGTTCGCGACACTCCTCTTGAGGCTTT.............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
...........................................................................................CACCCACGGTATGTCTCGCT............................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
...................................................................................................GTATGTCTCGCTATAGCGCCGA.................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................AGGAGCTTTCTATCCAGGTTCAAGAT................................................... 26 1 1 1.00 1 1 0 0 0
...............................................................................................................................................................................GGTGCTTTCTATCCAGGTTCAAGAT................................................... 25 1 1 1.00 1 0 1 0 0
..........................................................................................................................................................GGGGCGGTCCACCGCAAAGTCGGAGCTT..................................................................... 28 0 1 1.00 1 1 0 0 0
..................................CGTTCGCGACACTCCTCTTGAGGCTT............................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................CGGAGCTTTCTATGCAGGTTCAAGAT................................................... 26 1 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................................TCCGGAAGTAGGACCCGTTGCTAC............. 24 1 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................TGACCCGTTGCTACTAGGCC....... 20 1 1 1.00 1 0 0 1 0
............CAGCAAGGTGGCAGAGCTCCGTCGT...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................................................................GGAAGTAGGACCCGTTGCTAC............. 21 0 1 1.00 1 1 0 0 0
................................................................................................................TAGCGCCGACCGTCTGGGGAACCCG.................................................................................................................. 25 0 1 1.00 1 1 0 0 0
...............................................................................................CACGGTATGTCTCGCTATAGCGCCGA.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
...............AAAGGTGGCAGAGCTCCGTCGT...................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0
...................................................................................AATGGCCCCACCCACGGTATGTCTC............................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
........................................................................................................................................................................................................................CGGAAGTAGGACCCGGTGCTACT............ 23 1 1 1.00 1 1 0 0 0
...............................................................................................................................................GGGCAAGTTTTGGGGCGGTC........................................................................................ 20 0 1 1.00 1 1 0 0 0
............................................................................................ACCCACGGTATGTCTCGCTATAGCGC..................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................................................................ACGCCGGAAGTAGGACCCGTTGCTAC............. 26 0 1 1.00 1 1 0 0 0
...................................................................................................................CGCCGACCGTCTGGGGAACCCG.................................................................................................................. 22 0 1 1.00 1 1 0 0 0
.........................................................................................................CTCGCTATAGCGCCGACCGTCTGGGGAAC..................................................................................................................... 29 0 8 0.25 2 0 2 0 0
..........................................................................................................TCGCTATAGCGCCGACCGT.............................................................................................................................. 19 0 10 0.20 2 1 0 1 0
...............................................................................................................ATAGCGCCGACCGTCTGGGGAACCC................................................................................................................... 25 0 6 0.17 1 1 0 0 0
...............................................................................................................................................................................................................TCTGCACGCCGGAAGTAGGACCCGT................... 25 0 20 0.15 3 3 0 0 0
..................................................................................................................................................................................................................GCACGCCGGAAGTAGGACCCGTT.................. 23 0 20 0.15 3 3 0 0 0
............................................................................................................GCTATAGCGCCGACCGTCTGGGGAA...................................................................................................................... 25 0 8 0.13 1 1 0 0 0
...........................................................................................................CGCTATAGCGCCGACCGTCTGGGGA....................................................................................................................... 25 0 8 0.13 1 1 0 0 0
............................................................................................................GCTATAGCGCCGACCGTCT............................................................................................................................ 19 0 10 0.10 1 1 0 0 0
..................................................................................................................................................................................................................GCACGCCGGAAGTAGGACCCGT................... 22 0 20 0.10 2 2 0 0 0
............................................................................................................................................................................................................TTCTCTGCACGCCGGAAGT............................ 19 0 14 0.07 1 1 0 0 0
..............................................................................................................................................................................CGGAGCTTTCTATCCAGGTTCAAGGT................................................... 26 1 16 0.06 1 1 0 0 0
...................................................................................................................................................................................................................CACGCCGGAAGTAGGACCCGT................... 21 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................................AACGCCGGAAGTAGGACCCGT................... 21 1 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................TCTGCACGCCGGAAGTAGGACC...................... 22 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................CGCCGGAAGTAGGACCCGT................... 19 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................TCTGCACGCCGGAAGTAGCACCCGT................... 25 1 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................ACGCCGGAAGTACGACCCGTT.................. 21 1 20 0.05 1 1 0 0 0
...............................................................................................................................................GGTCGAGTTGTGGGGCGGT......................................................................................... 19 3 20 0.05 1 0 0 0 1
......................................................................................................................................................................................................................GCCGGAAGTAGGACCCGTT.................. 19 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................TGCCGGAAGTAGGACCCGTTGCTGCTA........... 27 2 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................................TGCAAGCAGGAAGTAGGACCCGT................... 23 2 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................CACCGGAAGTAGGACCCGT................... 19 1 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................................CACGCCGGAAGTAGGACCCGTT.................. 22 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................CGCCGGAAGTAGGACCCGTT.................. 20 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................CGCCGGAAGTAGGACCCGTTGC................ 22 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................TCTGGAGGCCGGAAGTAG.......................... 18 2 20 0.05 1 0 0 1 0
................................................................................................................................................................................................................CTGCACGCCGGAAGTAGGACCCGTT.................. 25 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_76:228286-228536 - dpe_2078 GCATC---------------------------------------TGCGAAAGTCGTTCCA----------CCGTCTCGAGGCAGCAAGCGC---TGTGAGGAGAACTCC-GAAAAGCCAATCGGGGCAATCCCCGGTTACCGGGGTGGGTGC---CATACAGAGCGATATCGCGGCTGGCAGACCCCTTGG-GCCGGGGACCCGTTCA--------------------AAACCC--CGCCAGGTGGCGTTTCAGCCT-CGA--AAGATAGGTCCAAGTTCTAGGAGAAGAGACGTGCGGCCTTCATCCTGGGCAACGATGATCCGGTGC----TCCT
dp5 XL_group3a:1823022-1823273 + dps_2853 GCATC---------------------------------------TGCGAAAGTCGTTCCA----------CCGTCTCGAGGCAGCAAGCGC---TGTGAGGAGAACTCC-GAAAAGCCAATCGGGACAATCCCCGGTTACCGGGGTGGCTGC---CATACAGAGCGATATCGCGGCTGGTAGACCCCTTGGGGCCGGGGACCCGTTCA--------------------CAACCC--CGGCAGGTGGCGTTTCAGCCT-CGA--AAGATAGGTCCAAGTTCTAGGAGAAGAGACGTGCGGCCTTCATCCTGGGCAACGATGATCCGGTGT----TCCT
droAna3 scaffold_13082:1529961-1530232 + GGGAT---------------------------------------GGCGAAGCTC--TCCACTGAGGGACAACATCCGGAGGCGAGCGGCGCCGGTGTAGGGGGAGATGCCAAGGCACCGAC----------CCCCAAAACGGGGCCCACTATGGGACCACCGAACGGTGTGGGGGGTAA--GAT-CCCTGAATC--GAGCTCCTTTCGCACCGGCGGCACCCCTAAGGAAGGCCCCGGTCCGACCACTGCTGGCCCCCTGCAGCGGAAGGGCT--CCTATAAAGATAGGAGAAGAGCGGCCTTCATCCTGATGAGGGCAGACCCATCGGC-------
droBip1 scf7180000395034:23173-23449 - CTGTCAAACTCCAAGGCCCTCAAAAGCTTAGGAGTTGCTGGGATGGAGAAGCTC--TCAACAGAGGGGCAGCATCCGGAGTAGACTCGTGCCGTTGTGGATTAGGGTGCCAAGGCAC--------------TTCTAAAGCGGGGCTAGCCATGGGACCACTGAACG------------------------------------------AACCGGCGGAGCCTCCTAGGCAACCTCTGGTCCGGTAGGGTCTCACTCGACGCAGCGGAAACGCT--CCTACAAAGAAAGGAGAAGAGCAGCCTTCATTCTCATAAGGGCGAACCCATTGACAACCCGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCATC---------------------------------------TGCGAAAGTCGTTCCA----------CCGTCTCGAGGCAGCAAGCGC---TGTGAGGAGAACTCC-GAAAAGCCAATCGGGGCAATCCCCGGTTACCGGGGTGGGTGC---CATACAGAGCGATATCGCGGCTGGCAGACCCCTTGG-GCCGGGGACCCGTTCA--------------------AAACCC--CGCCAGGTGGCGTTTCAGCCT-CGA--AAGATAGGTCCAAGTTCTAGGAGAAGAGACGTGCGGCCTTCATCCTGGGCAACGATGATCCGGTGC----TCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................GCAACGATGATCCGGTGC----....1813.003300000
................................................................................................................................................................................................................................................................................CCAAGTTCTAGGAGAAGAGACGT..........................................2312.002020000
..............................................................................................................................................................ACAGAGCGATATCGCGGCTGGCAGA..........................................................................................................................................................2511.001010000
..................................................................................................AGGAGAACTCC-GAAAAGCC...........................................................................................................................................................................................................................1911.001100000
................................................................................................................................................................................................................................................................................CCAAGTTCTAGGAGAAGAGACGTGC........................................2511.001010000
.................................................................................................................................................................................................................................................................................CAAGTTCTAGGAGAAGAGACGTG.........................................2311.001010000
........................................................TCCA----------CCGTCTCGAGGCAGCAAGCGC---...................................................................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................CAAGTTCTAGGAGAAGAGACA...........................................2111.001010000
................................................................................................................................................................................................................................................................................CCAAGTTCTAGGAGAAGAGACGTG.........................................2411.001010000
................................................................................................TGAGGAGAACTCC-GAAAAGCCAATC.......................................................................................................................................................................................................................2511.001010000
...........................................................A----------CCGTCTCGAGGCAGCAAGCGC---...................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................TACCGGGGTGGGTGC---CATACAGAAA............................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................GTGCGGCCTTCATCCTGG..........................18200.255050000
................................................................................................................................................................................................................................................................................................GAGACGTGCGGCCTTCATCCTGG..........................23130.081010000
...............................................................................................................................................................CAGAGCGATATCGCGGCTGGC.............................................................................................................................................................21200.051010000
dp5
GCATC---------------------------------------TGCGAAAGTCGTTCCA----------CCGTCTCGAGGCAGCAAGCGC---TGTGAGGAGAACTCC-GAAAAGCCAATCGGGACAATCCCCGGTTACCGGGGTGGCTGC---CATACAGAGCGATATCGCGGCTGGTAGACCCCTTGGGGCCGGGGACCCGTTCA--------------------CAACCC--CGGCAGGTGGCGTTTCAGCCT-CGA--AAGATAGGTCCAAGTTCTAGGAGAAGAGACGTGCGGCCTTCATCCTGGGCAACGATGATCCGGTGT----TCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................TGCGGCCTTCATCCTGGGCAACGATG.................2612.0020000000020
...............................................................................................................................................................CAGAGCGATATCGCGGCTGGT.............................................................................................................................................................2111.0010100000000
..................................................AGTCGTTCCA----------CCGTCTCGAGG................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................TCTCGAGGCAGCAAGCGC---TGTGAG.............................................................................................................................................................................................................................................2411.0010100000000
................................................................................................TGAGGAGAACTCC-GAAAAGCCAATC.......................................................................................................................................................................................................................2511.0010000000010
.......................................................TTCCA----------CCGTCTCGAGGCAGCAAGCGC---...................................................................................................................................................................................................................................................2611.0010000000010
.......................................................................................................................................................................................................................................................................................CTAGGAGAAGAGACGTGCGGCCTTC.................................2511.0010100000000
.......................................................................................GCGC---TGTGAGGAGAACTCC-GAAAAGC............................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................................................................................................................................................................ATAGGTCCAAGTTCTAGGAGAAGAG..............................................2511.0010100000000
............................................................................CGAGGCAGCAAGCGC---TGTGAGGAGA.........................................................................................................................................................................................................................................2511.0010000000010
..........................................................CA----------CCGTCTCGAGGCAGCAAGCGC---...................................................................................................................................................................................................................................................2320.5010000000010
..........................................................CA----------CCGTCTCGAGGCAGCAAGCG.......................................................................................................................................................................................................................................................2230.3310000000100
...............................................................................................................................................................CAGAGCGATATCGCGGCTGG..............................................................................................................................................................20130.3140300001000
................................................................................................................................................................AGAGCGATATCGCGGCTGG..............................................................................................................................................................19140.1420100001000
...............................................................................................................................................................................................................................................................................................AGAGACGTGCGGCCTTCATCC.............................2180.1310100000000
...............................................................................................................................................................................................................................................................................................AGAGACGTGCGGCCTTCATCCT............................2280.1310100000000
..................................................................................................................................................................................................................................................................................................GACGTGCGGCCTTCATCCTG...........................20200.1020200000000
....................................................................................................................................................................................................................................................................................................CGTGCGGCCTTCATCCTGGG.........................20200.1020200000000
.....................................................................................................................................................................................................................................................................................................GTGCGGCCTTCATCCTGGG.........................19200.1020200000000
.................................................................................................................................................................GAGCGATATCGCGGCTGGA.............................................................................................................................................................19140.0710100000000
................................................................................................................................................................AGAGCGATATCGCGGCTG...............................................................................................................................................................18140.0710100000000
.....................................................................................................................................................................................................................................................................................................GTGCGGCCTTCATCCTGGGCA.......................21200.0510100000000
......................................................................................................................................................................................................................................................................................................TGCGGCCTTCATCCTGGG.........................18200.0510100000000
......................................................................................................................................GGTTACCGGGGTGGCTTT---G.....................................................................................................................................................................................19200.0510100000000
.................................................................................................................................................................................................................................................................................................AGACGTGCGGCCTTCATCCT............................20200.0510100000000
.................................................................................................................................................................................................................................................................................................AGACGTGCGGCCTTCATCCTGG..........................22200.0510100000000
......................................................................................................................................................................................................................................................................................................TGCGGCCTTCATCCTGGGCA.......................20200.0510000010000
........................................................TCCA----------CCGTCTCGAGGCAGCA...........................................................................................................................................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................................................ACGTGCGGCCTTCATCCTGG..........................20200.0510100000000
......................................................................................................................................................................................................................................................................................................TGCGGCCTTCATCCTGGGCAAC.....................22200.0510100000000
droAna3
GGGAT---------------------------------------GGCGAAGCTC--TCCACTGAGGGACAACATCCGGAGGCGAGCGGCGCCGGTGTAGGGGGAGATGCCAAGGCACCGAC----------CCCCAAAACGGGGCCCACTATGGGACCACCGAACGGTGTGGGGGGTAA--GAT-CCCTGAATC--GAGCTCCTTTCGCACCGGCGGCACCCCTAAGGAAGGCCCCGGTCCGACCACTGCTGGCCCCCTGCAGCGGAAGGGCT--CCTATAAAGATAGGAGAAGAGCGGCCTTCATCCTGATGAGGGCAGACCCATCGGC-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................AACATCCGGAGGCGAGCGGCGC......................................................................................................................................................................................................................................................22204.45898900000
.....................................................................AACATCCGGAGGCGAGCGGCG.......................................................................................................................................................................................................................................................21202.60525100010
..........................................................................................................................................................................................CCTGAATC--GAGCTCCTTTCGCACCG............................................................................................................................25201.05212010000
..........................................................................................................................................................................................CCTGAATC--GAGCTCCTTTCGCAC..............................................................................................................................23200.95191540000
................................................................................................TAGGGGGAGATGCCAAGGCACCGAC----------..............................................................................................................................................................................................................25200.5511650000
..........................................................................................................................................................................................CCTGAATC--GAGCTCCTTTCGCACC.............................................................................................................................24200.50100100000
......................................................................ACATCCGGAGGCGAGCGGCGC......................................................................................................................................................................................................................................................21200.357700000
.......................................................................................................................................................................................................................................................TGCTGGCCCCCTGCAGCGGAAGGGC.................................................................25200.306060000
.....................................................................AACATCCGGAGGCGAGCGGCGCC.....................................................................................................................................................................................................................................................23200.255050000
..........................................................................................................................................................................................CCTGAATC--GAGCTCCTTTCGCACCGG...........................................................................................................................26200.204040000
...........................................................................................................................................................................................................................CCCCTAAGGAAGGCCCCGGTCC................................................................................................22200.204120010
...........................................................................................................................................................................................................................CCCCTAAGGAAGGCCCCGGTCCGA..............................................................................................24200.204400000
......................................................................ACATCCGGAGGCGAGCGGCG.......................................................................................................................................................................................................................................................20200.153300000
...........................................................................................................................................................................................................................CCCCTAAGGAAGGCCCCGGTCCG...............................................................................................23200.153300000
....................................................................CAACATCCGGAGGCGAGCGGCGCC.....................................................................................................................................................................................................................................................24200.102200000
................................................................................................................................................................................................................................................................................................................ATCCTGATGAGGGCAGACCCA............21200.102200000
..............................................................................................................................................................................................AATC--GAGCTCCTTTCGCACCGGC..........................................................................................................................23200.102200000
..........................................................................................................................................................................................CCTGAATC--GAGCTCCTTTCGCACCGGCG.........................................................................................................................28200.102200000
.............................................................TGAGGGACAACATCCGGAGGCGAGCG..........................................................................................................................................................................................................................................................26200.102200000
............................................................................................................................................................................................TGAATC--GAGCTCCTTTCGCACCGG...........................................................................................................................24200.102200000
..............................................................................................................................................................................................AATC--GAGCTCCTTTCGCACCGG...........................................................................................................................22200.102110000
...........................................................................................................................................................................................................................CCCCTAAGGAAGGCCCCGG...................................................................................................19200.102101000
......................................................................ACATCCGGAGGCGAGCGGC........................................................................................................................................................................................................................................................19200.102200000
...........................................................................................................................................................................................CTGAATC--GAGCTCCTTTCGCACCGGC..........................................................................................................................26200.102200000
........................................................................................................................................................GGGACCACCGAACGGTGTGGGG...................................................................................................................................................................22200.102000002
................................................................................................................................................................................................................................................................................................................ATCCTGATGAGGGCAGACCC.............20200.102020000
..................................................................................................................................................................................................................................................................TGCAGCGGAAGGGCT--CCTATAAAG.....................................................24200.102200000
....................................................................................................................................................................................................GAGCTCCTTTCGCACCGGCGGCACC....................................................................................................................25170.061100000
.........................................................................................................................................................................................................................CACCCCTAAGGAAGGCCCCGGTCCGA..............................................................................................26200.051010000
............................................................................................................................................................................................TGAATC--GAGCTCCTTTCGCACCGGC..........................................................................................................................25200.051100000
..............................................................................................TGTAGGGGGAGATGCCAAGGC..............................................................................................................................................................................................................................21200.051010000
.................................................................................................................................................................................................C--GAGCTCCTTTCGCACCGGCGG........................................................................................................................22200.051100000
..............................................................................................................................................................................................AATC--GAGCTCCTTTCGCACCGGCGGC.......................................................................................................................26200.051100000
....................................................................CAACATCCGGAGGCGAGCGGCGCCGG...................................................................................................................................................................................................................................................26200.051100000
..............................................................GAGGGACAACATCCGGAGGCGAGCGG.........................................................................................................................................................................................................................................................26200.051100000
...................................................................................................................................................................................................................................................................GCAGCGGAAGGGCT--CCTATAAAG.....................................................23200.051100000
...........................................................................................................................................................................................................................CCCCTAAGGAAGGCCCCGGTC.................................................................................................21200.051010000
............................................................................................................................................................................................................................CCCTAAGGAAGGCCCCGGTCCGAC.............................................................................................24200.051100000
................................................................................................................................................................................................................................................................................................................ATCCTGATGAGGGCAGACCCAT...........22200.051001000
..................................................................................................................................................CACTATGGGACCACCGAACGGTGTGGGG...................................................................................................................................................................28200.051010000
..................................................................................................................................................................AACGGTGTGGGGGGTAA--GAT-CCCTGA..................................................................................................................................................26200.051100000
..................................................................................................................................................................................................................................................................TGCAGCGGAAGGGCT--CCTA..........................................................19200.051010000
.......................................................................................................................................................TGGGACCACCGAACGGTGTGGGGG..................................................................................................................................................................24200.051010000
...................................................................................................GGGGAGATGCCAAGGCACCGA.........................................................................................................................................................................................................................21200.051010000
..........................................................................................................................................................................................CCTGAATC--GAGCTCCTTTCGC................................................................................................................................21200.051100000
..............................................................................................................................................................................................................................................................CCCCTGCAGCGGAAGGGCT--CC............................................................21200.051000100
............................................................................................................................................................................................TGAATC--GAGCTCCTTTCGCA...............................................................................................................................20200.051100000
.......................................................................................................................................................................................................................................................TGCTGGCCCCCTGCAGCGGAAGGGCT--..............................................................26200.051100000
.................................................................................................................................................................................................................................................................CTGCAGCGGAAGGGCT--CCTATAAAG.....................................................25200.051100000
...............................................................................................................................................................CCGAACGGTGTGGGGGGTAA--G...........................................................................................................................................................21200.051100000
.......................................................................................................................................................................................T-CCCTGAATC--GAGCTCCTTTCGCACC.............................................................................................................................26200.051100000
..............................................................GAGGGACAACATCCGGAGGCGAG............................................................................................................................................................................................................................................................23200.051100000
..........................................................................CCGGAGGCGAGCGGCGCA.....................................................................................................................................................................................................................................................18200.051100000
...................................................................................................................................................................ACGGTGTGGGGGGTAA--GAT-........................................................................................................................................................19200.051100000
...................................................................................................................................................ACTATGGGACCACCGAACGGTGTGGGG...................................................................................................................................................................27200.051100000
...........................................................................................................................................................................................CTGAATC--GAGCTCCTTTCGCACCGGCGG........................................................................................................................28200.051100000
......................................................................................GGCGCCGGTGTAGGGGGAGATG.....................................................................................................................................................................................................................................22200.051100000
..........................................................................................................................................................GACCACCGAACGGTGTGGGGG..................................................................................................................................................................21200.051000100
.............................................................TGAGGGACAACATCCGGAGGCGA.............................................................................................................................................................................................................................................................23200.051000010
........................................................................................................................................................................................................................GCACCCCTAAGGAAGGCCCCGGTCCG...............................................................................................26200.051100000
...............................................................................................GTAGGGGGAGATGCCAAGGCACCG..........................................................................................................................................................................................................................24200.051100000
.....................................................................................................................................................................................GAT-CCCTGAATC--GAGCTCCTTTCGC................................................................................................................................25200.051100000
.............................................................................GAGGCGAGCGGCGCCGGTGTAGGGG...........................................................................................................................................................................................................................................25200.051010000
.....................................................................AACATCCGGAGGCGAGCGGCGCCC....................................................................................................................................................................................................................................................24200.051000010
.........................................................................................................................................................................................CCCTGAATC--GAGCTCCTTTCGCACCGGC..........................................................................................................................28200.051100000
....................................................................................................................................................................................................................................................................CAGCGGAAGGGCT--CCTATAAAGATAGG................................................27200.051100000
..........................................................CACTGAGGGACAACATCCGGAGGCGA.............................................................................................................................................................................................................................................................26200.051100000
.................................................................................................AGGGGGAGATGCCAAGGCACCGA.........................................................................................................................................................................................................................23200.051100000
................................................................................................................................................................................................................................................................................................................ATCCTGATGAGGGCAGACCCATCGGC-------26200.051100000
........................................................................ATCCGGAGGCGAGCGGCGCCG....................................................................................................................................................................................................................................................21200.051100000
.........................................................................................................................................................................................CCCTGAATC--GAGCTCCTTTCGCACCG............................................................................................................................26200.051100000
...................................................................................................GGGGAGATGCCAAGGCACCGAC----------..............................................................................................................................................................................................................22200.051010000
...........................................................................................................................................................................................CTGAATC--GAGCTCCTTTCGCACC.............................................................................................................................23200.051100000
droBip1
CTGTCAAACTCCAAGGCCCTCAAAAGCTTAGGAGTTGCTGGGATGGAGAAGCTC--TCAACAGAGGGGCAGCATCCGGAGTAGACTCGTGCCGTTGTGGATTAGGGTGCCAAGGCAC--------------TTCTAAAGCGGGGCTAGCCATGGGACCACTGAACG------------------------------------------AACCGGCGGAGCCTCCTAGGCAACCTCTGGTCCGGTAGGGTCTCACTCGACGCAGCGGAAACGCT--CCTACAAAGAAAGGAGAAGAGCAGCCTTCATTCTCATAAGGGCGAACCCATTGACAACCCGGSizeHit CountTotal NormTotal
No Reads

Generated: 06/08/2015 at 05:06 PM