dpe_2070

exon [dper_GLEANR_15332:1]; CDS [Dper\GL14523-cds]; intron [Dper\GL14523-in]; Antisense to intron [Dper\GL14521-in]

Name	Class	Family	Strand
Nobel_I-int	LTR	Pao	+

------------------------##########################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAATAGTCGAAATAACACAGAAAAATGAGTCTCAAGAAGATATTGAAAGGGTTCGTAAAGGCACCAAGTTAGGCCCCAGTCTTCAGCGCTTGAATCCCTTCATCCATGAAGAGGCTGGGACATGGTGCTCTTTTTCGTTGTTGCGAGTTGGAAGGCGACTAGTTAACGCTCCTATGTCATATAATGCCAAGTTTCCCTTTTTATTGACAAAACGCTCGCAGTTTGTGCGACATACGTTCGCTATCTGCATC *************************************************************************************************((....(((((((((..((.((...)).)))))))))))...........))**************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V042 embryo	V057 head	V050 head
............TAACACAGAAAAATGAGTCTCAAGAAG....................................................................................................................................................................................................................	27	0	20	0.25	5	5	0	0	0	0
.........................................................................................................................................................................................................TATTGACAAAACGCTCGCAGTTTGTG........................	26	0	20	0.15	3	3	0	0	0	0
..........................................................................................................................................................................................................ATTGACAAAACGCTCGCAGTTTG..........................	23	0	20	0.15	3	3	0	0	0	0
...................................................................................................................................TTTTCGTTGTTGCGAGTTGG....................................................................................................	20	0	20	0.10	2	2	0	0	0	0
.......................................................................................................CCATGAAGAGGCTGGGACATGGTGC...........................................................................................................................	25	0	20	0.10	2	2	0	0	0	0
......................................................................................................TCCATGAAGAGGCTGGGACATGGTGC...........................................................................................................................	26	0	20	0.10	2	2	0	0	0	0
...................................................................................................TCATCCATGAAGAGGCTGGGACATGG..............................................................................................................................	26	0	20	0.10	2	2	0	0	0	0
.............................................................................................................................................................................................................................TTTGTGCGACTTACGTCCGCTT........	22	3	12	0.08	1	0	0	0	0	1
..........................................TTGAAAGGGTTCGTAAAGGC.............................................................................................................................................................................................	20	0	20	0.05	1	0	1	0	0	0
......................................................................................................................................TCGTTATTGCGAGTTGGAA..................................................................................................	19	1	20	0.05	1	1	0	0	0	0
...............................................................................................................................................................TAGTTAACGCTCCTATGTCATATA....................................................................	24	0	20	0.05	1	1	0	0	0	0
......................................GATATTGAAAGGGTTCGTAAAG...............................................................................................................................................................................................	22	0	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................ATTGACAAAACGCTCGCAGTTT...........................	22	0	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................................GGCAAGTTTCCCTTTTCAT...............................................	19	2	20	0.05	1	0	0	1	0	0
...........ATAACACAGAAAAATGAGTC............................................................................................................................................................................................................................	20	0	20	0.05	1	0	1	0	0	0
..............ACACAGAAAAATGAGTCTCA.........................................................................................................................................................................................................................	20	0	20	0.05	1	0	0	0	1	0
...................................................................................................................................TTTTCGTTGTTGCGAGTTGGA...................................................................................................	21	0	20	0.05	1	0	1	0	0	0
......................................................................................................................................TCGTTGTTGCGAGTTGAAAA.................................................................................................	20	2	20	0.05	1	1	0	0	0	0
...............................................AGGGTTCGTAAAGGCACCAAGTTAG...................................................................................................................................................................................	25	0	20	0.05	1	1	0	0	0	0
.......................................................................................................................................................................................................TTTATTGAGAAAACGCTCGCA...............................	21	1	20	0.05	1	1	0	0	0	0
...........................................................................................................................................GTTGCGAGTAGGAAAGCGTC............................................................................................	20	3	20	0.05	1	1	0	0	0	0
........................................................................................CTTGAATCCCTTCATCCATG...............................................................................................................................................	20	0	20	0.05	1	0	0	1	0	0
...................................................................................CAGCGCTTGAATCCCTTCATC...................................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0

TTTATCAGCTTTATTGTGTCTTTTTACTCAGAGTTCTTCTATAACTTTCCCAAGCATTTCCGTGGTTCAATCCGGGGTCAGAAGTCGCGAACTTAGGGAAGTAGGTACTTCTCCGACCCTGTACCACGAGAAAAAGCAACAACGCTCAACCTTCCGCTGATCAATTGCGAGGATACAGTATATTACGGTTCAAAGGGAAAAATAACTGTTTTGCGAGCGTCAAACACGCTGTATGCAAGCGATAGACGTAG **************************************************************************************************((....(((((((((..((.((...)).)))))))))))...........))*************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V042 embryo	V057 head
...........................................................................................................................................................................................GTTCAAAGGGAAAAATAACTGTTT........................................	24	0	20	0.55	11	11	0	0
...............................AGTTCTTCTATAACTTTCCCAAGCAT..................................................................................................................................................................................................	26	0	20	0.40	8	8	0	0
..........................................................................................................................................................................................GGTTCAAAGGGAAAAATAACTGTT.........................................	24	0	20	0.25	5	5	0	0
..........................................................................................................................................................................................GGTTCAAAGGGAAAAATAACTGTTT........................................	25	0	20	0.05	1	0	1	0
.............................................................................................................................................................................................................CCGTTTTGCCAGAGTCAAAC..........................	20	3	20	0.05	1	0	0	1
.....................................................................................CGCGAACTTAGGGAAGTAGGTACTTCT...........................................................................................................................................	27	0	20	0.05	1	1	0	0
.........................................................................................................................................................................................CGGTTCAAAGGGAAAAACAACTGTTT........................................	26	1	20	0.05	1	1	0	0
...........................................................................................................................................................................................GTTCAAAGGGAAAAATAACTGTTTT.......................................	25	0	20	0.05	1	1	0	0
...........................................................................................................................................................................................GTTCAAAGGGAAAAAGAACTGTTT........................................	24	1	20	0.05	1	1	0	0
.......................................................................................CGAACTTAGGGAAGTAGGTACT..............................................................................................................................................	22	0	20	0.05	1	1	0	0
................................GGTCTTCTATAACTTTCCCAAGCAT..................................................................................................................................................................................................	25	1	20	0.05	1	1	0	0
........................................................................................................................................................................................ACGGTTCAAAGGGAAAAATAACTGTTTT.......................................	28	0	20	0.05	1	1	0	0
.............................................................................................................................................................................................TCAAAGGGAAAAATAACTGTTTTGCGAG..................................	28	0	20	0.05	1	1	0	0
...................................................................................................................................................................................ATATTACGGTTCAAAGGGAAAAAG................................................	24	1	20	0.05	1	1	0	0
..........................................................................GGGTCAGAAGTCGCGAACTTAGGGA........................................................................................................................................................	25	0	20	0.05	1	1	0	0
.............................................................................................................................................................................................TCAAAGGGAAAAATAACTGTTTTGCG....................................	26	0	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_75:227336-227586 +	dpe_2070	AAATAGTCGAAATAACACAGAAAAATGAGTCTCAAGAAGATATTGAAAGGGTTCGTAAAGGCACC-AAGTTAGGCCCCAGTCTTCAGCGCTTGAATCCCTTCATCCATGA--AGAGGCTGGGACATGGTGCTCTTTTTCGTTGTTGCGAGTTGG-AAGGCGACTAGTTAACGCTCCTAT-------------------------GTCATATAATGCCAAGTTTCCCTTTTTATT----GACAAAACGCTCGCAGTTTGTGC-GACATACGTTCGCTATCTGCATC
dp5	Unknown_group_225:1101-1352 -		AAATAGTCGAAATAACACAGAAAAATGAGTCTCAAGAAGATATTGAAAGGGTTCGTAAAGGCACC-AAGTTAGGCCCCAGTCTTCAGCGTTTGAATCCCTTCATCCATGA--AGAGGCTGGGACTTGGTGCTCTTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGTTAACGCTCCTAT-------------------------GTCATATAATGCCAAGTTTCCCTTTTTATT----GACAAAATGCTCGCAGTTTGTGCAGACATACGTTCGCTATCTGCATC
droWil2	scf2_1100000004958:496014-496265 -		AAATTATTGAAATATTGCAAAATAAAGAATTTCGAGAAGATATTAAAAGGGTTCGTAAGAGCGCC-CAAATGGGTCAGAAACTTCAAGGTTTGACTCCCTTTCTACACGA--GTACACTGGTTCGTGGTGCTCATTTGCGTTGTTGAGAGTTGG-GGGGCGACTTGTAAACGCTCCTAT-------------------------TGCATATGATGCGAAATTTCCGCTCATTTT----ATAAAAACGCTCGCACTTTGTTCGAAGCCATGCCCGTCATCTCCATT
droVir3	scaffold_12931:44892-45131 +		AAATTGTTGAAGTCATCCAACGAGTTGTATTTAAGGATGACATAGATAGAGTTTGAAAGG-------------GTCATAGCCTTCAGCGTCTTAATCCATTTATACATGA--GTATAATGGATCTTGGTGCTCGTTTTCGTTGTTGCAAGTAGG-GGGACGACTTGTAAATGCTTCTAT-------------------------TTTAAATGATGTCAAGTTTCCGATACTTTT----TAAAAAAAGATCGCAATTCGCTAGAAGCTTTATTAGATACCTGCATT
droMoj3	scaffold_6498:2826423-2826674 -		CAGTCATATCTGTAATTCAACACATCGAATTCAGCGAAGAAATTAAGAAAGTAAAGAAATCAATC-GGGTTGCAACCGTCATTACAAAAACTGACGCCTTTTTTGCACCC--ACATCAGCATGGCAGGCGTGTGTTGTGGTTGCTACGAGTCGG-AGGTCGTCTATTGAAGGCACCACT-------------------------AGCACATAATGCCAAATTCCCCTTATTGCT----TCCAAAAAGGTGTCGCTTTGTGACGCTTTATTTGGACCATTTGCATC
droGri2	scaffold_14966:36788-37027 +		GCATAATTTGGAACATCCAGCAATTATCATTCGTCGAAGACATTCGCCAACTGCAAAAAGATCAA-CCACTTAGAAGCCATCTATAGTTTCTGAATCCTTTTCTAGGTCG--GTCCACAG------------AATTTTCACTTATCAGAGTTGG-CGGCCGGCTGGACAACGTTGAGTT-------------------------TGAGAACTTCGAAAAACATCCGATATTGTT----GCCCAGTAAATCGCACTTCGTCTGGATCTATGTGCGGCATCTACATC
droAna3	scaffold_13339:990801-991052 +		AAATTGTCCAAATAGTTCAAAAGCACGAGTATCAAGAGCAAATTAAAAATTTTCGAAAGAACCTT-GTTGTTAGTCGGAGTCTACAGAAGCTAAATCCATTTATCCATGA--AGCTTCTAAGGCTGGGCTTGCGTTTTCGTTGTTGCGGGTCGG-GGGGCGACTAATTAATGCTTCTAT-------------------------ATCGTACGATGCCAAGTTTCCAGTATTGTT----GACGAAGCGCTCTCAATTTGTTCAGAGCTATGTCCGATACTTGCACA
droBip1	scf7180000395405:922-1174 +		AAATAGTCGAAATAGTCCAAGAGCACGAGTATCAAGATGAAATAGAAAAGATCCGAAAAAAATTTAAGTGTTAGCCCTAGCCTACAAAAGCTTAATCCCTTTCTACACGA--ATCTTCAGAGGCTGGGCTTACCTTTTCGTTGTTGCGGGTTGG-GGGGCGACTAGCTAATGCTCCTAT-------------------------ATCGTACGATGCCAAGTTTCCAGTATTGTT----GACAAAACGCTCTCAATTTGTTCAGAGCTACGTCCGATACTTGCACG
droKik1	scf7180000302050:5623-5875 +		AGATTGTCGAAATAATCCAAAAACACGAGTATCAAATCGAAATAGGAAAAATTCGCAAAGGCTCC-AAGGTTGGCCCAAGTCTTCAACGATTGAACCCATTCATTCATGA--GGACACGGGCACCTGGTGTAATTTTTCGTTGTTGCGAGTGGGGGGGGCGACTAGCTAATGCTCCTAT-------------------------ATCCTACTATGCCAAGTTTTCCTTGCTGAT----GACGAAACGCTCCCAATTTGTGCAGAGCTACGTCCGGTATCTGCACC
droFic1	scf7180000453179:477-728 +		AAATTGTCGAGACCATCCAGAAACACGAGTATCACGAAGTTCTTGAAAAAGTTCGGAAGAACTCC-AGAGTTGGCCCAAGTCTTCAACGATTGAACCCATTCATTCATGA--AGACTCAGGCACTTGGTGTAATTTTTCGTTGTTGCGAGTTGG-GGGGCGATTAGCAAATGCTCCTAT-------------------------AACGTACGATGCCAAGTTTCCCCTGCTGTT----GACAAAATGCTCCCAATTTGTGCAGAGCTATGTCCGGCATTTGCATC
droEle1	scf7180000490530:16095-16346 -		AAATTGTCGAGATAATTTAAAAACACGAGTATCAAGAAGAAGTCGAAAAAGTTCGTAAAGGCTCC-AGAGTCGGCCCAAGTCTTCAGAGATTGAACCCATTCATTGATAA--AGATACGGGAACTTGGTGTAACTTTTCGTTTTTGCGAGTTGG-AGGGCGACTAGTTACCGCTCCCAT-------------------------ATCATACGTTGCCAAGTTTCCTTTGTTGTT----GACAAAACGCTCCCAATTTTTGCAGAGCTGTGTCCGGGAACTGCACT
droRho1	scf7180000778227:1089-1339 +		AAATTGTCGAGATATTACAGAAGCACGAGTATCATGAAGAAAGAGAAAAAGTTCGTAAAGGATCC-AGAGTTGGCCCAAGTCTTCAGCGATTGAATCCATTCATCCATGA--AGACAAGGGGACTTGGTGTCACTTTTCTTTGTTGCGAGTTGG--GGGCGACTAGCTAATGCTCCTAT-------------------------ATCATACGATGCCAAGTTTCCATTGTTGTT----GACAAAACGCTCCCAATTTGTGCAGAGCTATGTTCGGCATCTTCACC
droBia1	scf7180000301256:893-1144 -		AAGTTGTCGAGATATTAAAAAAACACGATTAACACGAAGAAACGGAAAAAGTCCCCAAAGGGACC-AAAGTTGGCCCATATCTTCAACGATTAAATCCATTCATTCATGA--TGACAAGGGGACTTGGTGCCAATTTTAGTTTTTGCGAGTGGG-GGGGCGACTAGCTTACTCTCCTAT-------------------------AACACACGATGTCAAGTTTCCATTATTGCT----GAAGAAACGCTCCCAATTTGTGCAGAGCTATGTACGGTATCTCCACC
droTak1	scf7180000414155:8365-8616 +		AAATTGTCGAGGTATTACAAAAACAAGAGTATCACGAAGAAAGGGAAAAAGTCCTTAAAGGCTCC-AGAGTTGGCCCAAGTCTTCAGCGATTGAATCCATTCATTCATGA--AGACACGGGGACTTGGTGTCACTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGCTAACGCTCCTAT-------------------------ATCATACGATGCCAAGTTTCCATTGTTGTT----GACGAAACGCTCCCAATTTGTGCAGAGCTATGTCCGGCATCTGCACC
droEug1	scf7180000408756:29883-30134 +		CAATTGTAGAAGTTATCCAATCTAACGAACTCAGTGACGACATAGGCAAAATTCGGAAACAGAGA-CCGTTATTACCGAATATTCAGAAATTAAATCCTTTTATGCAGGA--AAATGGCTTGGATTGGTGCTCCTCGACGTTGCTCCGAGTTGG-TAGTCGGTTATTGAATGCTCCTAT-------------------------CCCGTACGAAGCCAAATTTCCGTTGTTGCT----ATCGAAAGGCTCGCAATTCGTTAAATCTTACGTGTCACACCTGCACG
dm3	chr2L:22350209-22350461 +		AGATTATCAAAATACTTCAAAAGTACGAGTATCAAATATAAATAGAA---TTTCGTAAAGGGCC--A------------------ATTGATTGAACGCATTCATTCATGA--GGACATGGGCACTTTGTGCAACTTTCCGTTATTGCGAGTTGG-GTGGA--GGAGCTAACGCTCATATGAGAACCCGGCGCAGAATCAGGCGTGTCATAAGATGCCAAGTTTCCCTTGCTGAT----GACGAAACGCTACCAATTTGTACATAGCTACACCCGCCATCTGCACC
droSim2	node_41272:20-239 +		AGATTATCGAAATAGTACAAAAGCACGAGTATCAA---------------------------------GGTCGGCCCAAGTCTTCAGCGATTGAACCCATTCATCCATGA--GGATACAGGCACTTGGTGCAACTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGCTAACGCTCCTAT-------------------------ATCATATGATGCCAAGTTTCCCTTGCTGTT----GACGAAACGCTCGCAGTTTGTGCAGAGCTACGTCCGGCATTTGCACC
droSec2	scaffold_83:49047-49299 +		AAATTATCAAAATAGTTCAATACCACGAGTATCAAATAGAAATTGAAAAGGTTCGTAA-GGTTCC-A-AGTTTTCCCACGTCTCCAAAGATTGAACCCATTCATTCATATTTAGACGCTGGTACTTC-CGTTACAACGCGTTGTTGCGAGTTGG-CGGGCTACTAGCTAACGCTCCTGT-------------------------ATCATACGATGTCAAGTTTCCCTTGCTGATGTTCGAC--AAAGTTCCCAATTTGAACAAAGCTACGTCCGCCATCTGCACC
droYak3	v2_chr3h_random_002:143506-143757 -		AAATTATCGAAATAGTACAAAAGCACGAGTATCAAGTAGAAATTGAAAAGGTTCGTAAAGGCTCC-AAGGTCGTCCCAAGTCTTCAGCGATTGAACCCATTCATCCATGA--TGATACAGGCACTTGGTGCAACTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGCTAACGCTCCTAT-------------------------ATCATATGATGCCAAGTTTCCCTTGCTGTT----GACGAAACGCTCGCAGTTTGTGCAGAGCTACGTCCGGCATTTGCACC
droEre2	scaffold_4845:878503-878753 -		AAATTATCGAAATAGTTCAAGAGTTCGAGTATCAAATTGAAATTAAAAAGGTTCGTAAAGGCTCC-AAGGTTGGCCCAAGTCTTCAACGATTAAACCCATTCATTCATTA--AGACACGGGCACTTGGTGCAACTTTTCGTTGTTGCGAGCTGG--GGGCGACTAGCTAACGCTCCTAT-------------------------ATCATATGATGCCAATTTTCCCTTGCTGTT----GACGAAACGCTCCCAATCTGTACAGAGCTACGTCCGGCATCTGCACC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AAATAGTCGAAATAACACAGAAAAATGAGTCTCAAGAAGATATTGAAAGGGTTCGTAAAGGCACC-AAGTTAGGCCCCAGTCTTCAGCGCTTGAATCCCTTCATCCATGA--AGAGGCTGGGACATGGTGCTCTTTTTCGTTGTTGCGAGTTGG-AAGGCGACTAGTTAACGCTCCTAT-------------------------GTCATATAATGCCAAGTTTCCCTTTTTATT----GACAAAACGCTCGCAGTTTGTGC-GACATACGTTCGCTATCTGCATC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............TAACACAGAAAAATGAGTCTCAAGAAG......................................................................................................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0	0
......................................................................................................................................................................................................................................TATT----GACAAAACGCTCGCAGTTTGTG.........................	26	20	0.15	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................ATT----GACAAAACGCTCGCAGTTTG...........................	23	20	0.15	3	0	3	0	0	0	0
......................................................................................................................................TTTTCGTTGTTGCGAGTTGG-..................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
........................................................................................................CCATGA--AGAGGCTGGGACATGGTGC..........................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
.......................................................................................................TCCATGA--AGAGGCTGGGACATGGTGC..........................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTGGGACATGG.............................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
..........................................TTGAAAGGGTTCGTAAAGGC...............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................TAGTTAACGCTCCTAT-------------------------GTCATATA.........................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................GATATTGAAAGGGTTCGTAAAG.................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................ATT----GACAAAACGCTCGCAGTTT............................	22	20	0.05	1	0	1	0	0	0	0
...........ATAACACAGAAAAATGAGTC..............................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
..............ACACAGAAAAATGAGTCTCA...........................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................TTTTCGTTGTTGCGAGTTGG-A.................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...............................................AGGGTTCGTAAAGGCACC-AAGTTAG....................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.........................................................................................CTTGAATCCCTTCATCCATG................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
....................................................................................CAGCGCTTGAATCCCTTCATC....................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

dp5

AAATAGTCGAAATAACACAGAAAAATGAGTCTCAAGAAGATATTGAAAGGGTTCGTAAAGGCACC-AAGTTAGGCCCCAGTCTTCAGCGTTTGAATCCCTTCATCCATGA--AGAGGCTGGGACTTGGTGCTCTTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGTTAACGCTCCTAT-------------------------GTCATATAATGCCAAGTTTCCCTTTTTATT----GACAAAATGCTCGCAGTTTGTGCAGACATACGTTCGCTATCTGCATC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........AAATAACACAGAAAAATGAGTCT.............................................................................................................................................................................................................................................................	23	8	6.50	52	0	40	5	0	5	0	2	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTGGGA..................................................................................................................................................................	21	10	4.90	49	0	31	1	0	0	0	0	14	3	0
.........AAATAACACAGAAAAATGAGTCTC............................................................................................................................................................................................................................................................	24	8	4.63	37	0	26	3	0	0	0	0	8	0	0
....................................................................................................TCATCCATGA--AGAGGCTGGGACTTG..............................................................................................................................................................	25	6	4.00	24	0	24	0	0	0	0	0	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTGGGAC.................................................................................................................................................................	22	10	3.80	38	0	29	2	0	0	0	0	7	0	0
........................................TATTGAAAGGGTTCGTAAAGGCAC.............................................................................................................................................................................................................................	24	8	2.50	20	0	10	3	0	1	0	2	3	1	0
...............................................................................................................................................................CGACTAGTTAACGCTCCTAT-------------------------GTC..............................................................................	23	12	2.17	26	0	22	1	0	0	0	0	2	1	0
...............................................................................................................................................................CGACTAGTTAACGCTCCTAT-------------------------GT...............................................................................	22	12	2.08	25	0	23	1	0	0	0	0	0	1	0
...............................................AGGGTTCGTAAAGGCACC-AAGC.......................................................................................................................................................................................................................	22	9	2.00	18	0	17	0	0	1	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTCTCAA..........................................................................................................................................................................................................................................................	26	8	1.75	14	0	9	0	0	0	0	0	2	3	0
....................................................................................................TCATCCATGA--AGAGGCTGGG...................................................................................................................................................................	20	10	1.70	17	0	15	1	0	0	0	0	1	0	0
...............................................AGGGTTCGTAAAGGCACC-AAGT.......................................................................................................................................................................................................................	22	9	1.67	15	0	14	1	0	0	0	0	0	0	0
........................................TATTGAAAGGGTTCGTAAAGGC...............................................................................................................................................................................................................................	22	8	1.50	12	0	9	0	0	0	0	0	2	1	0
....................................................................................................TCATCCATGA--AGAGGCTGGGACTTGG.............................................................................................................................................................	26	6	1.50	9	0	8	0	0	0	0	1	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTGGGACT................................................................................................................................................................	23	6	1.33	8	0	8	0	0	0	0	0	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTGGGACTT...............................................................................................................................................................	24	6	1.17	7	0	7	0	0	0	0	0	0	0	0
............................................................................................................................................TTGTTGCGAGTTGG-GGGG..............................................................................................................................	18	12	1.08	13	0	12	0	0	0	0	0	1	0	0
...............................................................................................................................................................CGACTAGTTAACGCTCCTAT-------------------------G................................................................................	21	12	1.00	12	0	11	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................TGCCAAGTTTCCCTTTTTATT----GAC............................................	24	2	1.00	2	0	1	1	0	0	0	0	0	0	0
...............................................AGGGTTCGTAAAGGCACC-AAG........................................................................................................................................................................................................................	21	9	1.00	9	0	9	0	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTCTCA...........................................................................................................................................................................................................................................................	25	8	0.88	7	0	7	0	0	0	0	0	0	0	0
...............................................AGGGTTCGTAAAGGCACC-AAGTTAGG...................................................................................................................................................................................................................	26	8	0.88	7	0	4	0	1	0	0	0	0	2	0
...................................................................................TCAGCGTTTGAATCCCTTCATCCA..................................................................................................................................................................................	24	7	0.86	6	0	5	1	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTCTCAAG.........................................................................................................................................................................................................................................................	27	8	0.75	6	0	6	0	0	0	0	0	0	0	0
.......................................................................................................TCCATGA--AGAGGCTGGGACTTG..............................................................................................................................................................	22	7	0.71	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................TTTTTCGTTGTTGCGAGTTGG-GG................................................................................................................................	23	9	0.67	6	0	0	0	0	0	0	0	6	0	0
............TAACACAGAAAAATGAGTCTCAAG.........................................................................................................................................................................................................................................................	24	8	0.63	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................TCCATGA--AGAGGCTGGGACTTGG.............................................................................................................................................................	23	7	0.57	4	0	4	0	0	0	0	0	0	0	0
....................................................................................CAGCGTTTGAATCCCTTCATC....................................................................................................................................................................................	21	7	0.57	4	0	1	2	0	1	0	0	0	0	0
.......................................................................................................................................TTTCGTTGTTGCGAGTTGG-G.................................................................................................................................	20	9	0.56	5	0	4	0	0	0	0	0	1	0	0
........................................................................................................................................TTCGTTGTTGCGAGTTGG-G.................................................................................................................................	19	11	0.55	6	0	0	0	0	1	0	1	3	1	0
.....................................................................................................................................................................................................................TGCCAAGTTTCCCTTTTTATT----GACA...........................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCCAAGTTTCCCTTTTTATT----...............................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TAATGCCAAGTTTCCCTTTTT......................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TAATGCCAAGTTTCCCTTTTTATT----GAC............................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCCAAGTTTCCCTTTTTATT----GACAA..........................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CATCCATGA--AGAGGCTGGGAC.................................................................................................................................................................	21	10	0.50	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTATT----GACAAAATGCTCGCAGTT.............................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTGG....................................................................................................................................................................	19	10	0.50	5	0	4	0	0	0	0	1	0	0	0
.....................................................................................................CATCCATGA--AGAGGCTGGGACTTG..............................................................................................................................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
...............................................AGGGTTCGTAAAGGCACC-AAGTT......................................................................................................................................................................................................................	23	9	0.44	4	0	3	0	0	0	0	1	0	0	0
..................................................................................TTCAGCGTTTGAATCCCTTCATCC...................................................................................................................................................................................	24	7	0.43	3	0	3	0	0	0	0	0	0	0	0
...................................................................................TCAGCGTTTGAATCCCTTCATC....................................................................................................................................................................................	22	7	0.43	3	0	2	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................TGCAGACATACGTTCGCTATCTG....	23	7	0.43	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................TGCTCTTTTTCGTTGTTGCGAGT......................................................................................................................................	23	10	0.40	4	0	3	0	0	0	0	0	1	0	0
.....................................................................................................CATCCATGA--AGAGGCTGGGA..................................................................................................................................................................	20	10	0.40	4	0	2	0	0	0	0	0	2	0	0
................................................................................................................................TGCTCTTTTTCGTTGTTGCGAGTTG....................................................................................................................................	25	10	0.40	4	0	2	0	0	0	0	0	2	0	0
............TAACACAGAAAAATGAGTCTCAAGAAGG.....................................................................................................................................................................................................................................................	28	8	0.38	3	0	3	0	0	0	0	0	0	0	0
..........AATAACACAGAAAAATGAGTCT.............................................................................................................................................................................................................................................................	22	8	0.38	3	0	3	0	0	0	0	0	0	0	0
........................................TATTGAAAGGGTTCGTAAAGG................................................................................................................................................................................................................................	21	8	0.38	3	0	3	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCTCAAGAA.......................................................................................................................................................................................................................................................	26	8	0.38	3	0	3	0	0	0	0	0	0	0	0
........................................TATTGAAAGGGTTCGTAAAGGCACC-AA.........................................................................................................................................................................................................................	27	8	0.38	3	0	3	0	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTC..............................................................................................................................................................................................................................................................	22	8	0.38	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................TGGGACTTGGTGCTCTTTTTCGTTG..............................................................................................................................................	25	6	0.33	2	0	0	0	0	0	0	0	0	2	0
..........................................TTGAAAGGGTTCGTAAAGGC...............................................................................................................................................................................................................................	20	9	0.33	3	0	0	0	0	0	0	1	0	2	0
...............................................AGGGTTCGTAAAGGCACC-AAGTTA.....................................................................................................................................................................................................................	24	9	0.33	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................TTTTCGTTGTTGCGAGTTGG-G.................................................................................................................................	21	9	0.33	3	0	1	0	0	0	0	0	2	0	0
...............................................AGGGTTCGTAAAGGCACC-A..........................................................................................................................................................................................................................	19	9	0.33	3	0	3	0	0	0	0	0	0	0	0
...................................................................................TCAGCGTTTGAATCCCTTCATCCATGA--.............................................................................................................................................................................	27	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................TTTTTCGTTGTTGCGAGTTGG-G.................................................................................................................................	22	9	0.33	3	0	0	0	0	0	0	0	3	0	0
...................................................................................................TTCATCCATGA--AGAGGCTGGGACTTGG.............................................................................................................................................................	27	6	0.33	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................ATCCATGA--AGAGGCTGGGACTTG..............................................................................................................................................................	23	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...................................................................................TCAGCGTTTGAATCCCTTCATCCAT.................................................................................................................................................................................	25	7	0.29	2	0	2	0	0	0	0	0	0	0	0
....................................................................................CAGCGTTTGAATCCCTTCATCCAT.................................................................................................................................................................................	24	7	0.29	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................TTCGTTGTTGCGAGTTGG-GGG...............................................................................................................................	21	11	0.27	3	0	2	0	0	0	0	0	0	1	0
........................................TATTGAAAGGGTTCGTAAAGGCA..............................................................................................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...............................................AGGGTTCGTAAAGGCACC-AAGTTAGGC..................................................................................................................................................................................................................	27	8	0.25	2	0	2	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCTCAAGA........................................................................................................................................................................................................................................................	25	8	0.25	2	0	1	0	0	1	0	0	0	0	0
.....................................................CGTAAAGGCACC-AAGTTAGG...................................................................................................................................................................................................................	20	8	0.25	2	0	1	0	0	0	0	1	0	0	0
..........AATAACACAGAAAAATGAGTCTC............................................................................................................................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCTCAA..........................................................................................................................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................CTTCATCCATGA--AGAGGCTG.....................................................................................................................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................TTCATCCATGA--AGAGGCTGG....................................................................................................................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CAAGTTTCCCTTTTTATT----GACAAAAC.......................................	26	5	0.20	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................TTTTCGTTGTTGCGAGTTGG-..................................................................................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................TTTTTCGTTGTTGCGAGTTGG-..................................................................................................................................	21	10	0.20	2	0	1	0	0	0	0	0	1	0	0
...............................................................................................................................GTGCTCTTTTTCGTTGTTGCG.........................................................................................................................................	21	11	0.18	2	0	0	0	0	0	0	0	0	2	0
..............................................................ACC-AAGTTAGGCCCCAGTCTTCAG......................................................................................................................................................................................................	24	11	0.18	2	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................TTCGTTGTTGCGAGTTGG-GG................................................................................................................................	20	11	0.18	2	0	1	0	0	0	0	1	0	0	0
.............................................................................................................................TGGTGCTCTTTTTCGTTGTTG...........................................................................................................................................	21	11	0.18	2	0	1	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................TCGCAGTTTGTGCAGACATACGTTC............	25	6	0.17	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................TCGCAGTTTGTGCAGACATACGTT.............	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTTGTGCAGACATACGTTCGCTATC......	25	6	0.17	1	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................TGTGCAGACATACGTTCGCTATCTGCAT.	28	6	0.17	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................TTCATCCATGA--AGAGGCTGGGACT................................................................................................................................................................	24	6	0.17	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................GACTAGTTAACGCTCCTAT-------------------------G................................................................................	20	12	0.17	2	0	2	0	0	0	0	0	0	0	0
................................................................................TCTTCAGCGTTTGAATCCCTTCATCCA..................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................TCAGCGTTTGAATCCCTTCATCCATG................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................................................................................TCTTCAGCGTTTGAATCCCTTCATC....................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................GTTGTTGCGAGTTGG-GGGG..............................................................................................................................	19	12	0.17	2	0	0	0	0	0	0	1	0	1	0
................................................................................TCTTCAGCGTTTGAATCCCTTCATCC...................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................CGACTAGTTAACGCTCCTAT-------------------------.................................................................................	20	12	0.17	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................TTCGTTGTTGCGAGTTGG-..................................................................................................................................	18	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGACATACGTTCGCTATCTGCATC	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GCAGACATACGTTCGCTATCTGCAT.	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................GCTGGGACTTGGTGCTCTTTT....................................................................................................................................................	21	6	0.17	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................CATCCATGA--AGAGGCTGGGACTTGG.............................................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..................................................................................TTCAGCGTTTGAATCCCTTCATC....................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....GTCGAAATAACACAGAAAAATGAGT...............................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGTGCAGACATACGTTCGCTATCTG....	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................AGCGTTTGAATCCCTTCATC....................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................ATCCATGA--AGAGGCTGGGACTTGG.............................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................CTTGGTGCTCTTTTTCGTTGTTGC..........................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................TGA--AGAGGCTGGGACTTGGTGCTC........................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................GTCTTCAGCGTTTGAATCC...........................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................CC-AAGTTAGGCCCCAGTCTTCAGCGTT..................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.AATAGTCGAAATAACACAGA........................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	1	0	0	0	0
.......CGAAATAACACAGAAAAATGAGTC..............................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGTGCAGACATACGTTCGCTATCTGC...	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................TCTTCAGCGTTTGAATCCCTTCA......................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GACATACGTTCGCTATCTGCAA.	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................AGCGTTTGAATCCCTTCATCCA..................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................TCAGCGTTTGAATCCCTTCATCC...................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........GAAATAACACAGAAAAATGAGTCT.............................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.AATAGTCGAAATAACACAGAA.......................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................AGCGTTTGAATCCCTTCATCCATA................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................GGGTTCGTAAAGGCACC-AAGTTAGGCC.................................................................................................................................................................................................................	27	7	0.14	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGTGCAGACATACGTTCGC..........	19	7	0.14	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................AGACATACGTTCGCTATCTGC...	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...TAGTCGAAATAACACAGAAAAATGAGA...............................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................TCAGCGTTTGAATCCCTTCATCCATA................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................CAGCGTTTGAATCCCTTCATCC...................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................CGTAAAGGCACC-AAGTTAGGCCCCAG.............................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGCAGACATACGTTCGCTATCTGC...	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....AGTCGAAATAACACAGAAAAA....................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	1	0	0	0
......................................................................TAGGCCCCAGTCTTCAGCGTTTGAATCCC..........................................................................................................................................................................................	29	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................CCAGTCTTCAGCGTTTGAATCCCTT........................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TACGTTCGCTATCTGCATC	19	7	0.14	1	0	0	0	1	0	0	0	0	0	0
...........ATAACACAGAAAAATGAGTCTCAAG.........................................................................................................................................................................................................................................................	25	8	0.13	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................A--AGAGGCTGGGACTTGGTGC..........................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........ATAACACAGAAAAATGAGTCTC............................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	1	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTCTA............................................................................................................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGT...............................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCTCA...........................................................................................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................CCATGA--AGAGGCTGGGACTTG..............................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................AGAGGCTGGGACTTGGTGCC.........................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............AACACAGAAAAATGAGTCTCAA..........................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	0	0	0	1	0	0
..........AATAACACAGAAAAATGAGTCTCAA..........................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCTCAAA.........................................................................................................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................GATATTGAAAGGGTTCGTAAAGGC...............................................................................................................................................................................................................................	24	8	0.13	1	0	0	0	0	0	0	0	0	1	0
........................................TATTGAAAGGGTTCGTAAAGGCACC-...........................................................................................................................................................................................................................	25	8	0.13	1	0	0	1	0	0	0	0	0	0	0
........................................TATTGAAAGGGTTCGTAAAG.................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	0	0	0	1	0
.............AACACAGAAAAATGAGTCTCAAGAA.......................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................CGTAAAGGCACC-AAGTTAGGTA.................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................TTGGTGCTCTTTTTCGTTGTTGCGA........................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
................................................GGGTTCGTAAAGGCACC-AAGTTAGGC..................................................................................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TGAATCCCTTCATCCATGA--AA...........................................................................................................................................................................	21	8	0.13	1	0	0	1	0	0	0	0	0	0	0
..........AATAACACAGAAAAATGAGTCTCAAA.........................................................................................................................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............AACACAGAAAAATGAGTCTC............................................................................................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................TGA--AGAGGCTGGGACTTGG.............................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCTCAAGAAG......................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............AACACAGAAAAATGAGTCTCAAG.........................................................................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTCTCAAGA........................................................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................GATATTGAAAGGGTTCGTAAAGGCAC.............................................................................................................................................................................................................................	26	8	0.13	1	0	0	1	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTCTCAAA.........................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................TCAAGAAGATATTGAAAGGGTTCGT.....................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........AAATAACACAGAAAAATGAGTCTCCGT.........................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................TGAGTCTCAAGAAGATATTGAAAGGGT.........................................................................................................................................................................................................................................	27	8	0.13	1	0	0	0	0	0	0	1	0	0	0
................................................GGGTTCGTAAAGGCACC-AAGTTAGG...................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............AACACAGAAAAATGAGTCTCAAGAAGA.....................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCTC............................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............TAACACAGAAAAATGAGTCT.............................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	1	0	0	0	0	0	0	0
........................................TATTGAAAGGGTTCGTAAAGGCACC-AAG........................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................TATTGAAAGGGTTCGTAAAGGCAAA-...........................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................CATGA--AGAGGCTGGGACTTG..............................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................TATTGAAAGGGTTCGTAAAGGCACC-AC.........................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............AACACAGAAAAATGAGTCTCA...........................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................TGAGTCTCAAGAAGATATTGAAAGGG..........................................................................................................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..........................................TTGAAAGGGTTCGTAAAGGCACC-A..........................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................AAGAAGATATTGAAAGGGTTC.......................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	1	0	0	0
..................................................GTTCGTAAAGGCACC-AAGCC......................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................GTGCTCTTTTTCGTTGTTGCGAGTTGG-..................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TTTCGTTGTTGCGAGTTGG-GGGG..............................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
................................................GGGTTCGTAAAGGCACC-AAGC.......................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...............................................AGGGTTCGTAAAGGCACC-AAAG.......................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...............................................AGGGTTCGTAAAGGCACC-AAGTA......................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..........................................TTGAAAGGGTTCGTAAAGGCA..............................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	1	0
............................................GAAAGGGTTCGTAAAGGCAA.............................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TTTTCGTTGTTGCGAGTTGG-GG................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TTTTCGTTGTTGCGAGTTGG-GGG...............................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	1	0	0
...........................................TGAAAGGGTTCGTAAAGGCACC-A..........................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................CTCTTTTTCGTTGTTGCGAGTTGG-..................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	1	0	0
................................................GGGTTCGTAAAGGCACC-AAG........................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...........................................TGAAAGGGTTCGTAAAGGCACC-AAA........................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...............................................AGGGTTCGTAAAGGCACC-AA.........................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TGCTCTTTTTCGTTGTTGCGAGTTGG-..................................................................................................................................	26	9	0.11	1	0	0	0	0	1	0	0	0	0	0
...........................................TGAAAGGGTTCGTAAAGGCACC-AAG........................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..................................................GTTCGTAAAGGCACC-AAGTT......................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TTTCGTTGTTGCGAGTTGG-GG................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................TTTTCGTTGTTGCGAGTTGG-GGGG..............................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................GCTCTTTTTCGTTGTTGCGAG.......................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................TGCTCTTTTTCGTTGTTGCGAG.......................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................CCTTCATCCATGA--AGAGGC.......................................................................................................................................................................	19	10	0.10	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................CTCTTTTTCGTTGTTGCGAG.......................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TTCATCCATGA--AGAGGCTG.....................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................TCATCCATGA--AGAGGCTGGGAA.................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................CTTCATCCATGA--AGAGGCTGGGA..................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTG.....................................................................................................................................................................	18	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TTTCGTTGTTGCGAGTTGG-..................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................CTTCATCCATGA--AGAGGCTGG....................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................CTTCATCCATGA--AGAGGCTGGGAC.................................................................................................................................................................	24	10	0.10	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................TGCTCTTTTTCGTTGTTGCGAGTT.....................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TCATCCATGA--AGAGGCTGGGG..................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	1	0

droWil2

AAATTATTGAAATATTGCAAAATAAAGAATTTCGAGAAGATATTAAAAGGGTTCGTAAGAGCGCC-CAAATGGGTCAGAAACTTCAAGGTTTGACTCCCTTTCTACACGA--GTACACTGGTTCGTGGTGCTCATTTGCGTTGTTGAGAGTTGG-GGGGCGACTTGTAAACGCTCCTAT-------------------------TGCATATGATGCGAAATTTCCGCTCATTTT----ATAAAAACGCTCGCACTTTGTTCGAAGCCATGCCCGTCATCTCCATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................GATATTAAAAGGGTTCGTAAGAGCGCC-...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...................................................................................................................................TCATTTGCGTTGTTGAGAGTTGG-GG................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................ACTTGTAAACGCTCCTAT-------------------------TGC..............................................................................	21	6	0.17	1	0	0	0	1	0

droVir3

AAATTGTTGAAGTCATCCAACGAGTTGTATTTAAGGATGACATAGATAGAGTTTGAAAGG-------------GTCATAGCCTTCAGCGTCTTAATCCATTTATACATGA--GTATAATGGATCTTGGTGCTCGTTTTCGTTGTTGCAAGTAGG-GGGACGACTTGTAAATGCTTCTAT-------------------------TTTAAATGATGTCAAGTTTCCGATACTTTT----TAAAAAAAGATCGCAATTCGCTAGAAGCTTTATTAGATACCTGCATT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................TAGAAGCTTTATTAGATACCTGCATT	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGTCATATCTGTAATTCAACACATCGAATTCAGCGAAGAAATTAAGAAAGTAAAGAAATCAATC-GGGTTGCAACCGTCATTACAAAAACTGACGCCTTTTTTGCACCC--ACATCAGCATGGCAGGCGTGTGTTGTGGTTGCTACGAGTCGG-AGGTCGTCTATTGAAGGCACCACT-------------------------AGCACATAATGCCAAATTCCCCTTATTGCT----TCCAAAAAGGTGTCGCTTTGTGACGCTTTATTTGGACCATTTGCATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........CTGTAATTCAACACATCGAATTCAGCG.........................................................................................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
.................CAACACATCGAATTCAGCGA........................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1
..........................................................................ACCGTCATTACAAAAACTGACGCCC..........................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	1	0
..........................................................................ACCGTCATTACAAAAACTGACGCCT..........................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	1	0
........................TCGAATTCAGCGAAGAAATTAAG..............................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
...................................................................................ACAAAAACTGACGCCTTTTTTGCACCC--A............................................................................................................................................................................	28	2	0.50	1	0	0	0	0	1	0
..................AACACATCGAATTCAGCGAAGAAA...................................................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
................TCAACACATCGAATTCAGCGA........................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1
..................................................................................................................................................................CTATTGAAGGCACCACT-------------------------AGCACATA.........................................................................	25	9	0.44	4	4	0	0	0	0	0
...........................................................................................................................................................................................................................................................CGCTTTGTGACGCTTTATTTGG............	22	7	0.43	3	3	0	0	0	0	0
.............................................................................................................................................................................................................................TCCCCTTATTGCT----TCCAAAAAGGTGT..................................	26	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................CTATTGAAGGCACCACT-------------------------AGCACATAA........................................................................	26	9	0.22	2	2	0	0	0	0	0
......................................................................................................TTGCACCC--ACATCAGCATGGCAG..............................................................................................................................................................	23	20	0.15	3	3	0	0	0	0	0
..............................................................................................................................................................TCGTCTATTGAAGGCACCACT-------------------------C................................................................................	22	8	0.13	1	1	0	0	0	0	0
.................................................................................................................................................................TCTATTGAAGGCACCACT-------------------------AGCACATAAT.......................................................................	28	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................TCGTCTATTGAAGGCACCACT-------------------------AGCA.............................................................................	25	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................TCGTCTATTGAAGGCACCACT-------------------------AGCACA...........................................................................	27	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................TCGTCTATTGAAGGCACCACT-------------------------AGC..............................................................................	24	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................TCGTCTATTGAAGGCACCACT-------------------------AG...............................................................................	23	8	0.13	1	1	0	0	0	0	0
..................................................................................................................................................................CTATTGAAGGCACCACT-------------------------AGCACAT..........................................................................	24	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................................................................................AGCACATAATGCCAAATTCCC............................................................	21	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................................................TATTGAAGGCACCACT-------------------------AGCACATAA........................................................................	25	10	0.10	1	1	0	0	0	0	0
....................................................................................................TTTTGCACCC--ACATCAGCATGG.................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................................GTTGTGGTTGCTACGAGTCGG-AGGT..............................................................................................................................	25	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................GTGGTTGCTACGAGTCGG-..................................................................................................................................	18	12	0.08	1	0	0	0	0	0	1
...............................................................................................................................GCGTGTGTTGTGGTTGCTACGAGTCGG-C.................................................................................................................................	28	12	0.08	1	1	0	0	0	0	0
......................................................................................................................................TTGTGGTTGCTACGAGTCGG-..................................................................................................................................	20	12	0.08	1	1	0	0	0	0	0
...............................................................................................................................GCGTGTGTTGTGGTTGCTACGAGC......................................................................................................................................	24	13	0.08	1	0	0	0	0	1	0
.............................................................................................................................AGGCGTGTGTTGTGGTTGCT............................................................................................................................................	20	13	0.08	1	0	0	0	1	0	0
...................................................................................................................TCAGCATGGCAGGCGTGTGTTGTGG.................................................................................................................................................	25	13	0.08	1	1	0	0	0	0	0
.......................................................................................................TGCACCC--ACATCAGCATGGCAGGCGTG.........................................................................................................................................................	27	14	0.07	1	1	0	0	0	0	0
................................................................................................CCTTTTTTGCACCC--ACATCAG......................................................................................................................................................................	21	15	0.07	1	1	0	0	0	0	0
........................................................................................................GCACCC--ACATCAGCATGGCAG..............................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................CCC--ACATCAGCATGGCAGGCG...........................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................................................TTTTGCACCC--ACATCAGCATGGCAGG.............................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................................................TTTTGCACCC--ACATCAGCAT...................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..........................................................................................................ACCC--ACATCAGCATGGCAGGCGT..........................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................TTTTTGCACCC--ACATCAGCATG..................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................TTTTGCACCC--ACATCAGCATGGCAGGCGA..........................................................................................................................................................	29	20	0.05	1	0	0	0	0	1	0

droGri2

GCATAATTTGGAACATCCAGCAATTATCATTCGTCGAAGACATTCGCCAACTGCAAAAAGATCAA-CCACTTAGAAGCCATCTATAGTTTCTGAATCCTTTTCTAGGTCG--GTCCACAG------------AATTTTCACTTATCAGAGTTGG-CGGCCGGCTGGACAACGTTGAGTT-------------------------TGAGAACTTCGAAAAACATCCGATATTGTT----GCCCAGTAAATCGCACTTCGTCTGGATCTATGTGCGGCATCTACATC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

AAATTGTCCAAATAGTTCAAAAGCACGAGTATCAAGAGCAAATTAAAAATTTTCGAAAGAACCTT-GTTGTTAGTCGGAGTCTACAGAAGCTAAATCCATTTATCCATGA--AGCTTCTAAGGCTGGGCTTGCGTTTTCGTTGTTGCGGGTCGG-GGGGCGACTAATTAATGCTTCTAT-------------------------ATCGTACGATGCCAAGTTTCCAGTATTGTT----GACGAAGCGCTCTCAATTTGTTCAGAGCTATGTCCGATACTTGCACA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................TTGCGTTTTCGTTGTTGCGGGTCG....................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......CCAAATAGTTCAAAAGCACGAG................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................CAGTATTGTT----GACGAAGCGCTCTCAATT.............................	28	20	0.40	8	8	0	0	0	0	0
........................................................................................................................................................................AATGCTTCTAT-------------------------ATCGTACGATGCC....................................................................	24	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................TTTCCAGTATTGTT----GACGAAGCGC.....................................	24	20	0.15	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................TGTTCAGAGCTATGTCCGATACTTG....	25	9	0.11	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................TCTCAATTTGTTCAGAGCTATGTCCGA..........	27	13	0.08	1	1	0	0	0	0	0
...............................................................................................................................................................................................................GTACGATGCCAAGTTTCCAGT.........................................................	21	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................TT----GACGAAGCGCTCTCAATTT............................	21	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................TTCCAGTATTGTT----GACGAAGCGCTA...................................	25	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GAGCTATGTCCGATACTTGCA..	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................GTTTCCAGTATTGTT----GACGAAGC.......................................	23	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................CCAGTATTGTT----GACGAAGCGCTCTC.................................	25	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................TTCCAGTATTGTT----GACGAAGCGCTCTC.................................	27	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................T-------------------------ATCGTACGATGCCAAGTTTC.............................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................TTCGTTGTTGCGGGTCGG-GG................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................TTTCCAGTATTGTT----GACGAAGCGCTCT..................................	27	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAGAGCTATGTCCGATACTTG....	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................GTTTCCAGTATTGTT----GACGAAG........................................	22	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................AGTTTCCAGTATTGTT----GACGAAGCGCTC...................................	28	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................TTCGTTGTTGCGGGTCGG-G.................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TGTT----GACGAAGCGCTCTCAATTTGTTC........................	27	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................AAGTTTCCAGTATTGTT----GACGAAGC.......................................	25	20	0.05	1	0	1	0	0	0	0

droBip1

AAATAGTCGAAATAGTCCAAGAGCACGAGTATCAAGATGAAATAGAAAAGATCCGAAAAAAATTTAAGTGTTAGCCCTAGCCTACAAAAGCTTAATCCCTTTCTACACGA--ATCTTCAGAGGCTGGGCTTACCTTTTCGTTGTTGCGGGTTGG-GGGGCGACTAGCTAATGCTCCTAT-------------------------ATCGTACGATGCCAAGTTTCCAGTATTGTT----GACAAAACGCTCTCAATTTGTTCAGAGCTACGTCCGATACTTGCACG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGATTGTCGAAATAATCCAAAAACACGAGTATCAAATCGAAATAGGAAAAATTCGCAAAGGCTCC-AAGGTTGGCCCAAGTCTTCAACGATTGAACCCATTCATTCATGA--GGACACGGGCACCTGGTGTAATTTTTCGTTGTTGCGAGTGGGGGGGGCGACTAGCTAATGCTCCTAT-------------------------ATCCTACTATGCCAAGTTTTCCTTGCTGAT----GACGAAACGCTCCCAATTTGTGCAGAGCTACGTCCGGTATCTGCACC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAATTGTCGAGACCATCCAGAAACACGAGTATCACGAAGTTCTTGAAAAAGTTCGGAAGAACTCC-AGAGTTGGCCCAAGTCTTCAACGATTGAACCCATTCATTCATGA--AGACTCAGGCACTTGGTGTAATTTTTCGTTGTTGCGAGTTGG-GGGGCGATTAGCAAATGCTCCTAT-------------------------AACGTACGATGCCAAGTTTCCCCTGCTGTT----GACAAAATGCTCCCAATTTGTGCAGAGCTATGTCCGGCATTTGCATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATTGTCGAGATAATTTAAAAACACGAGTATCAAGAAGAAGTCGAAAAAGTTCGTAAAGGCTCC-AGAGTCGGCCCAAGTCTTCAGAGATTGAACCCATTCATTGATAA--AGATACGGGAACTTGGTGTAACTTTTCGTTTTTGCGAGTTGG-AGGGCGACTAGTTACCGCTCCCAT-------------------------ATCATACGTTGCCAAGTTTCCTTTGTTGTT----GACAAAACGCTCCCAATTTTTGCAGAGCTGTGTCCGGGAACTGCACT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAATTGTCGAGATATTACAGAAGCACGAGTATCATGAAGAAAGAGAAAAAGTTCGTAAAGGATCC-AGAGTTGGCCCAAGTCTTCAGCGATTGAATCCATTCATCCATGA--AGACAAGGGGACTTGGTGTCACTTTTCTTTGTTGCGAGTTGG--GGGCGACTAGCTAATGCTCCTAT-------------------------ATCATACGATGCCAAGTTTCCATTGTTGTT----GACAAAACGCTCCCAATTTGTGCAGAGCTATGTTCGGCATCTTCACC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGTTGTCGAGATATTAAAAAAACACGATTAACACGAAGAAACGGAAAAAGTCCCCAAAGGGACC-AAAGTTGGCCCATATCTTCAACGATTAAATCCATTCATTCATGA--TGACAAGGGGACTTGGTGCCAATTTTAGTTTTTGCGAGTGGG-GGGGCGACTAGCTTACTCTCCTAT-------------------------AACACACGATGTCAAGTTTCCATTATTGCT----GAAGAAACGCTCCCAATTTGTGCAGAGCTATGTACGGTATCTCCACC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATTGTCGAGGTATTACAAAAACAAGAGTATCACGAAGAAAGGGAAAAAGTCCTTAAAGGCTCC-AGAGTTGGCCCAAGTCTTCAGCGATTGAATCCATTCATTCATGA--AGACACGGGGACTTGGTGTCACTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGCTAACGCTCCTAT-------------------------ATCATACGATGCCAAGTTTCCATTGTTGTT----GACGAAACGCTCCCAATTTGTGCAGAGCTATGTCCGGCATCTGCACC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAATTGTAGAAGTTATCCAATCTAACGAACTCAGTGACGACATAGGCAAAATTCGGAAACAGAGA-CCGTTATTACCGAATATTCAGAAATTAAATCCTTTTATGCAGGA--AAATGGCTTGGATTGGTGCTCCTCGACGTTGCTCCGAGTTGG-TAGTCGGTTATTGAATGCTCCTAT-------------------------CCCGTACGAAGCCAAATTTCCGTTGTTGCT----ATCGAAAGGCTCGCAATTCGTTAAATCTTACGTGTCACACCTGCACG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGATTATCAAAATACTTCAAAAGTACGAGTATCAAATATAAATAGAA---TTTCGTAAAGGGCC--A------------------ATTGATTGAACGCATTCATTCATGA--GGACATGGGCACTTTGTGCAACTTTCCGTTATTGCGAGTTGG-GTGGA--GGAGCTAACGCTCATATGAGAACCCGGCGCAGAATCAGGCGTGTCATAAGATGCCAAGTTTCCCTTGCTGAT----GACGAAACGCTACCAATTTGTACATAGCTACACCCGCCATCTGCACC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................AA---TTTCGTAAAGGGCC--A------------------ATTGATTGAA..............................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TATTGCGAGTTGG-GTGGA--GGAGC......................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TTGTGCAACTTTCCGTTATTGCGAGT......................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCCGTTATTGCGAGTTGG-GT................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TTTCGTAAAGGGCC--A------------------ATTGATTGAA..............................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTTGG-GTGGA--GGAGCTAACGCTA..............................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................TTTCCGTTATTGCGAGTTGG-GT................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TAACGCTCATATGAGAACCCGGCGCAGA..........................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TTTCCGTTATTGCGAGTTGG-GTG...............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGATTATCGAAATAGTACAAAAGCACGAGTATCAA---------------------------------GGTCGGCCCAAGTCTTCAGCGATTGAACCCATTCATCCATGA--GGATACAGGCACTTGGTGCAACTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGCTAACGCTCCTAT-------------------------ATCATATGATGCCAAGTTTCCCTTGCTGTT----GACGAAACGCTCGCAGTTTGTGCAGAGCTACGTCCGGCATTTGCACC

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

AAATTATCAAAATAGTTCAATACCACGAGTATCAAATAGAAATTGAAAAGGTTCGTAA-GGTTCC-A-AGTTTTCCCACGTCTCCAAAGATTGAACCCATTCATTCATATTTAGACGCTGGTACTTC-CGTTACAACGCGTTGTTGCGAGTTGG-CGGGCTACTAGCTAACGCTCCTGT-------------------------ATCATACGATGTCAAGTTTCCCTTGCTGATGTTCGAC--AAAGTTCCCAATTTGAACAAAGCTACGTCCGCCATCTGCACC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAATTATCGAAATAGTACAAAAGCACGAGTATCAAGTAGAAATTGAAAAGGTTCGTAAAGGCTCC-AAGGTCGTCCCAAGTCTTCAGCGATTGAACCCATTCATCCATGA--TGATACAGGCACTTGGTGCAACTTTTCGTTGTTGCGAGTTGG-GGGGCGACTAGCTAACGCTCCTAT-------------------------ATCATATGATGCCAAGTTTCCCTTGCTGTT----GACGAAACGCTCGCAGTTTGTGCAGAGCTACGTCCGGCATTTGCACC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................CATTCATCCATGA--TGATACAGGCACT................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................TCAAGTAGAAATTGAAAAGGTTCGTA....................................................................................................................................................................................................................................	26	20	0.55	11	0	11	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TTGTGCAGAGCTACGTCCGGCATTTGC...	27	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10
..................................................................................................................................................................................T-------------------------ATCATATGATGCCAAGTTTCCCT..........................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGCAGAGCTACGTCCGGCATTTG....	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AT-------------------------ATCATATGATGCCAAGT................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................T----GACGAAACGCTCGCAGTTTGTGCA.......................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTTGCTGTT----GACGAAACGCTCGCAGTTT............................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................AAGTAGAAATTGAAAAGGTTCGTAA...................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................GAGTATCAAGTAGAAATTGAAAAGGT.........................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................TGCAACTTTTCGTTGTTGCGAGTTGG-G.................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................TCAAGTAGAAATTGAAAAGGTTCGT.....................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
...............................................AAGGTTCGTAAAGGCTCC-AAGGTC.....................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGCAGAGCTACGTCCGGCATTTGCAC.	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................AAGTCTTCAGCGATTGAACC............................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................AGCACGAGTATCAAGTAGAAATTGA...............................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................TCAAGTAGAAATTGAAAAGGTTCGTATT..................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TTCGTTGTTGCGAGTTGG-GGGGC.............................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CTAT-------------------------ATCATATGATGCCAAGTTTCCCT..........................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................TAGAAATTGAAAAGGTTCGTAAAGGC...............................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTTGTGCAGAGCTACGTCCGGCATT......	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTTGTGCAGAGCTACGTCCGGCATTTG....	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................TCAAGTAGAAATTGAAAAGGTTC.......................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AAATTATCGAAATAGTTCAAGAGTTCGAGTATCAAATTGAAATTAAAAAGGTTCGTAAAGGCTCC-AAGGTTGGCCCAAGTCTTCAACGATTAAACCCATTCATTCATTA--AGACACGGGCACTTGGTGCAACTTTTCGTTGTTGCGAGCTGG--GGGCGACTAGCTAACGCTCCTAT-------------------------ATCATATGATGCCAATTTTCCCTTGCTGTT----GACGAAACGCTCCCAATCTGTACAGAGCTACGTCCGGCATCTGCACC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-9.4	-9.0	-8.7	-8.5

dpe_2070

scaffold_75:227386-227536 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads