ID:

dpe_2052

 Coordinate:

scaffold_70:278480-278630 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.3 -9.8 -9.6 -9.6

Flybase annnotation

CDS [Dper\GL24797-cds]; exon [dper_GLEANR_7190:3]; intron [Dper\GL24797-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_155:67456-67478 +
  2. scaffold_157:34469-34491 +
  3. dpe_2052  scaffold_70:278528-278550 +
  4. scaffold_53:295337-295359 +
  5. scaffold_28:418804-418826 +
  6. scaffold_328:12561-12583 +
  7. scaffold_95:85834-85856 +
  8. scaffold_97:154113-154135 +
  9. scaffold_2897:571-593 +
  10. scaffold_3040:750-772 +
  11. scaffold_855:5803-5825 +
  12. scaffold_3777:2394-2416 +
  13. scaffold_1628:101-123 +
  14. scaffold_2531:3255-3277 +
  15. scaffold_2558:2996-3018 +
  16. scaffold_5717:1442-1464 +
  17. scaffold_6574:1516-1538 +
  18. scaffold_8762:1266-1288 +
  19. scaffold_6813:1570-1592 +
  20. scaffold_9646:317-339 +
star
  1. scaffold_509:2834-2858 -
  2. dpe_2052  scaffold_70:278496-278520 +
  3. scaffold_90:207638-207662 -
  4. scaffold_53:295305-295329 +
  5. scaffold_30:71188-71212 -
  6. scaffold_12369:458-482 +
  7. scaffold_102:43771-43795 +
  8. scaffold_586:10717-10741 -
  9. scaffold_788:4941-4965 +
  10. scaffold_1267:4889-4913 -
  11. scaffold_3789:1645-1669 +
  12. scaffold_1798:1322-1346 -
  13. scaffold_4470:307-331 -
  14. scaffold_1878:3142-3166 -
  15. scaffold_4934:1060-1084 -
  16. scaffold_6639:638-662 -
  17. scaffold_6038:858-882 -
  18. scaffold_8115:1084-1108 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCACAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAATGGCGTCTGCCGGAGGAGAGCCATACTGACATAGTATCGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACTCACAACGTTCCCCCTCGTTTTTGTATATATTTTAAAATATATATATTTTTTTTTATATATTTTTTAGGATGGAAAAATATCTAATCAAGAGTTTAAAGATGCGGTCAAGAAAACTTG
******************************************************************..(((.........(((((((.....))))).))..................)))********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 M021
embryo
.............TTTCTGTCTCTCTCGCACGCACTCT..................................................................................................................................................................................................................... 25 0 20 27.90 558 0 558 0
....................................................................................................................................................................................................................................AAAGATGCGGTCAAGAAAA.... 19 0 1 3.00 3 3 0 0
.......................................................................................................................................................................................................................................GATGCGGTCAAGAAAACTT. 19 0 1 3.00 3 3 0 0
..............................................................................................................................................................................................................................GAGTTTAAAGATGCGGTCA.......... 19 0 1 3.00 3 3 0 0
................................................................................................................................................................................................................................GTTTAAAGATGCGGTCAAGAA...... 21 0 1 2.00 2 2 0 0
.......................................................................................................................................................................................................................................GATGCGGTCAAGAAAACTTG 20 0 1 2.00 2 2 0 0
................................................................................................................................................................................................................................GTTTAAAGATGCGGTCAAGAAA..... 22 0 1 2.00 2 1 1 0
................................................................................................................................................................................................................................GTTTAAAGATGCGGTCAAG........ 19 0 1 2.00 2 2 0 0
..............................................................................................................................................................................................................................GAGTTTAAAGATGCGGTCAAGAA...... 23 0 1 2.00 2 2 0 0
..................................................................................................................................................................................................................................TTAAAGATGCGGTCAAGAAA..... 20 0 1 2.00 2 2 0 0
............................................................................................................................................................................................................................AAGAGTTTAAAGATGCGGTCA.......... 21 0 1 2.00 2 1 1 0
.....................................................................................................................................................................................................................................AAGATGCGGTCAAGAAAACT.. 20 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................................TAAAGATGCGGTCAAGAAAA.... 20 0 1 1.00 1 0 1 0
..............................................................................................................................................................................................................................GAGTTTAAAGATGCGGTCAAGAAAA.... 25 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................ATCAAGAGTTTAAAGATGCG.............. 20 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................................GTTTAAAGATGGGGTCAAGA....... 20 1 1 1.00 1 1 0 0
..........................................................................................................................................................................................................ATGGAAAAATATCTAATCA.............................. 19 0 1 1.00 1 0 1 0
................................................................................................................................................................................................................................GTTTAAAGATGCGGTCAAGAAAA.... 23 0 1 1.00 1 1 0 0
............................................................................................................................................................................................................................AAGAGTTTAAAGATGCGGTCAA......... 22 0 1 1.00 1 0 1 0
.................................................................................................................................................................................................................................TTTAAAGATGCGGTCAAGAA...... 20 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................................CAAGAGTTTAAAGATGCGGTCAAGAA...... 26 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................................TAATCAAGAGTTTAAAGATGCGGTC........... 25 0 1 1.00 1 1 0 0
..................................................................................................................................................................................................................................TTAAAGATGCGGTCAAGAA...... 19 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................................................AAAGATGCGGTCAAGAAAAC... 20 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................................GTTTAAAGATGCGGTCAAGA....... 20 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................................................GATGCGGTCAAGAAAACT.. 18 0 1 1.00 1 0 1 0
............................................................................................................................................................................................................................AAGAGTTTGAAGATGCGGTCAAGAAA..... 26 1 1 1.00 1 0 1 0
.......................................................................................................................................................................................................................TAATCAAGAGTTTAAAGAT................. 19 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................................AGATGCGGTCAAGAAAACT.. 19 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................................................................AAGATGCGGTCAAGAAAAC... 19 0 1 1.00 1 1 0 0
..................................................................................................GGGTATAACTGTAGAGTTGCGGT.................................................................................................................................. 23 0 20 0.10 2 2 0 0
..................................................................CTGCCGGAGGAGAGCCATACTGACA................................................................................................................................................................ 25 0 18 0.06 1 0 0 1
....................CTCTCTCGCACGCACTCTTTGTC................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0
....................................................................................................................................CTCACAACGTTCCCCCTCGTTTTTG.............................................................................................. 25 0 20 0.05 1 0 1 0
.................................................................................................................................................................................................TATATTAGGATGGAATAATA...................................... 20 3 20 0.05 1 0 1 0
..........................................................................................................CTGTAGAGTTGCGGTGTC............................................................................................................................... 18 0 20 0.05 1 0 1 0

Anti-sense strand reads

GCGTGTCTGACTAAAAGACAGAGAGAGCGTGCGTGAGAAACAGCACAGCAAATTATAATTACCGCAGACGGCCTCCTCTCGGTATGACTGTATCATAGCCCATATTGACATCTCAACGCCACAGGCGTCGTTGAGTGTTGCAAGGGGGAGCAAAAACATATATAAAATTTTATATATATAAAAAAAAATATATAAAAAATCCTACCTTTTTATAGATTAGTTCTCAAATTTCTACGCCAGTTCTTTTGAAC
**********************************************************************************************************************************..(((.........(((((((.....))))).))..................)))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
............................................................ACCGCAGACGGCCTCCTCTCGGTATGACT.................................................................................................................................................................. 29 0 10 0.10 1 1
......................................................................................................................CCACAGGCGTCGTTGAGTGTTG............................................................................................................... 22 0 20 0.10 2 2

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_70:278430-278680 + dpe_2052 CGCACAGACTGATTTTCTGT----CTCTCTCGCACGCAC------------------------------------------T--------CTTT-GTCGTGT--CGTTTAATATTAATGGCGTCTGCCGGAGGAGAGC---CATACTGA--------------CATAGTAT-----CGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACT----CACAACGTTCCCCCTCGTTTTTGTATATATTTTAAAATATA-------TAT--------AT-TTT-TTTTT-----ATATATTTTT-----------------------TAGGATGGAAAAATATCTAATCAAGAG---TT--TAAAGAT--------GCGGTCAAGAAAACTTG
dp5 Unknown_group_418:3387-3638 + CGCACAGACCGATTTTCTGT----CTCTCTCGCACGCAC------------------------------------------T--------CTTT-GTCGTGT--CGTTTAATATTAATGGCGTCTGCCGGAGGAGAGC---CATACTGA--------------CATAGTAT-----CGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACT----CACAACGTTCCCCCTCGTTTTTGTATATATTTTAAAATATA-------TAT--------TT-TTTTTTGTT-----ATATATTTTT-----------------------TAGGATGGAAAAATATCTAATCAAGAG---TT--TAAAGAT--------GCGGTCAAGAAAACTTG
droWil2 scf2_1100000004965:403994-404095 + TG---------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAA-----AAAC---TGTCTAATTTTAAA-TAATCTTT-----ATTACTTTTA-----------------------CAGGATGGGAAAATTTCAAATCAAGAA---TT--TAAGGAC--------GCTGTAAAAAAAACGTG
droVir3 scaffold_12963:14281013-14281115 + TT---------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAGACGTTTTATATCATT-------GAT--------AC-TTA-TACTT-----TTATATATTT-----------------------TAGGATGGAAAAATTTCAAACCAGGAG---TT--CAAGGAT--------GCTGTCAAAAAAACCTG
droMoj3 scaffold_6500:30783355-30783438 + AA---------------AT-AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------AT-TATTTTTTT-----TGTTTCGTTA-----------------------TAGGATGGAAAAATTTCAAATCAGGAA---TT--CAAAGAT--------GCTGTTAAAAAAACCTG
droGri2 scaffold_14853:7628734-7628830 - TT---------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAC-ATAAT--ATATATA---TAT--------ATT-TTTT-TTT-----TCGTATCTGT-----------------------AAAACTAGTGCAGCTTTTTAAAGAGTA---TT--TAAAAAG--------TCGATAAAAAAGA----
droAna3 scaffold_13230:3422715-3422816 - TT---------------TT-TAT--------------------------------------------------ATATTTTACACCTTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAGATC-------TAT------------------AT-----TTAATTATTT-----------------------TAGGATGGAAAAATATCGAATCAAGAA---TT--TAAAGAT--------GCGGTTAAAAAAACATG
droBip1 scf7180000396712:3223977-3224114 - GC---------------GA-CTC-------------------------------------ATCCCTTTTTTATTTGATTTATATTATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATATA-------------TT------------ATT-----AAATATTATTATAAAGTTAAAATTTTATTATTTCAGGATGGTAAAATATCCAATCAAGAA---TT--TAAAGAT--------GCGGTAAAGAAAACATG
droKik1 scf7180000302234:155255-155377 - AG---------------GT-AAA----------------------------------A-----------------------------------------------------------------------------------TGTAATGA--------------AATAATATCTGCAAGGGTATA---CAAACTTCGGCGT-----------GCCGAAGTTAGCTTCCTTTCTTGTTTATATATA--TTTTGAT--ATATTTT---TAT--------ATT-TTTA-TTTTT---ATATATATTT-----------------------T-----------------------------------------------------------------
droFic1 scf7180000453312:21203-21328 + AA---------------CT-CAT----------------------------------ATCATCC----------------GC------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAAAATGTTATATT--AAGTAAT--ATAAACTAAATAG--------AT-TGTTTTAAT-----TT-ATCTTTT-----------------------TAGGATGGAAAAATATCAAATCAGGAG---TT--CAAGGAT--------GCAGTAAA-AAAACATG
droEle1 scf7180000491092:13328-13411 - AG---------------AT-AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT--------AT-TTGTTTAAT-----ATATTCTTTT-----------------------TAGGATGGAAAAATATCTAACCAAGAG---TT--TAAAGAT--------GCAGTAAAAAAAACTTG
droRho1 scf7180000768915:1477-1571 + AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-----CGGGTATC---TGATAGTCGGGCCA----------CCCGACTATAGAGTTCTCTCTTGTTTTAATATATATTTAT----ATA-------TAT--------AT-TTA-TATTT-----ATATTTATTT-----------------------TA----------------------------------------------------------------
droBia1 scf7180000302490:30611-30701 - AT---------------TT-AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACAT------------------TTT--------ACT-TTGTTTAT-----TTATTCTTTT-----------------------AAGGATGGAAAAATATCTAATCAAGAA---TT--TAAAGAT--------GCAGTAAAAAAAACTTG
droTak1 scf7180000415095:184383-184627 - TC---------------TAT----CTCCCTCGCACTCCC------------------------------------------T----------TTAGCTGAGTTACGATTATTAGTCGGGACACCAACCCGAGTACAGCGTTCGCACTCCCTTAAG--------CTGAGTGA-----CGGGTATT---AGATAGTCGGGAC------AACAACCCGACTATAGCGTTCTCTCTTGTTTTTGCATATATTTTGCATATTT-------CCT--------AT-ATG-CATCCGAAT-TT-ATTACAT-----------------------TTGAAAAATATGACACCTACCTAGAAATTTTTGGAAAAAAT--------AGGACCAAAAAAA----
droEug1 scf7180000409065:154323-154500 - CT---------------AT-AAGCATACTCAACATACTTCCTCTGACAATAGGTGGCG-------CCTTGT--GAATTTCCA----------CTAGCAAAATTAATATT----------------------------------------TTAAAATTGTGTAAAACAGTAA-----CGGGTATC---TTATAGTCGCGGCA----------CTCGACTATAGCGTTTCCTCTTGTTTTTATATATTTTTTC----TTC-------TCT--------CT-TTT-------------TTTTTTTT-----------------------T-----------------------------------------------------------------
dm3 chrX:22135944-22136060 - CA---------------GC-AGC-------------------------------------TTAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAATGTTCCTTATCATATA-------TAA--------AT-TTA-ATCTT-----ATATATATTT-----------------------AAGTACT-AAAACTAAAAAATTAACTA---CT--TAAAAAAAATGACCAACTGTAA---AAAAAAG
droSim2 node_1389:1658-1749 - TA---------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-----ATATAAC---TGT--------ATT-TTCAATTT-----AAATACTTTC-----------------------TAGGATGGCAAAATATCCAATCAAGAA---TT--TAAGGAT--------GCTGTAAAAAAAACATG
droSec2 scaffold_168:4736-4827 + TA---------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-----ATATAAC---TGT--------ATT-TTCAATTT-----AAATACTTTC-----------------------TAGGATGGCAAAATATCCAATCAAGAA---TT--TAAGGAT--------GCTGTAAAAAAAACATG
droYak3 2R:2529358-2529496 - AC---------------TA---------------------------------------------------------------------------------------------------------------------------------G--------------CTGAGTAA-----CGGGTATC---AGATAGTCGGGGAA----------CTCGACTATAGCGTTCTCTCTTGTTTTTTTATATATTTATGA----A-------AAT--------GA-TTA-AACTTGT--TGCTAATTATTC----------------------AAACCTGAAAATTTTCTAATTCAATGA---TT--TAGAG---------------------------
droEre2 scaffold_4929:23704775-23704871 - AT---------------AT-AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAATATAT-AC---TGT--------ATT-TTAATTTT-----AAATATTTTT-----------------------TAGGATGGCAAAATATCCAATCAAGAG---TT--TAAGGAT--------GCTGTAAAAAAAACATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CGCACAGACTGATTTTCTGT----CTCTCTCGCACGCAC------------------------------------------T--------CTTT-GTCGTGT--CGTTTAATATTAATGGCGTCTGCCGGAGGAGAGC---CATACTGA--------------CATAGTAT-----CGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACT----CACAACGTTCCCCCTCGTTTTTGTATATATTTTAAAATATA-------TAT--------AT-TTT-TTTTT-----ATATATTTTT-----------------------TAGGATGGAAAAATATCTAATCAAGAG---TT--TAAAGAT--------GCGGTCAAGAAAACTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............TTTCTGT----CTCTCTCGCACGCAC------------------------------------------T--------CT............................................................................................................................................................................................................................................................................................................252027.9055805580000
.........................................................................................................................................................................................................................................................................................................................................................................AAAGAT--------GCGGTCAAGAAAA....1913.003000003
............................................................................................................................................................................................................................................................................................................................................................................GAT--------GCGGTCAAGAAAACTT.1913.003000003
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--TAAAGAT--------GCGGTCA..........1913.003000003
................................................................................................................................................................................................................................................................................................................................................................G---TT--TAAAGAT--------GCGGTCAAGAA......2112.002000002
............................................................................................................................................................................................................................................................................................................................................................................GAT--------GCGGTCAAGAAAACTTG2012.002000002
................................................................................................................................................................................................................................................................................................................................................................G---TT--TAAAGAT--------GCGGTCAAGAAA.....2212.002010001
................................................................................................................................................................................................................................................................................................................................................................G---TT--TAAAGAT--------GCGGTCAAG........1912.002000002
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--TAAAGAT--------GCGGTCAAGAA......2312.002000002
.....................................................................................................................................................................................................................................................................................................................................................................T--TAAAGAT--------GCGGTCAAGAAA.....2012.002000002
............................................................................................................................................................................................................................................................................................................................................................AAGAG---TT--TAAAGAT--------GCGGTCA..........2112.002010001
..........................................................................................................................................................................................................................................................................................................................................................................AAGAT--------GCGGTCAAGAAAACT..2011.001000001
........................................................................................................................................................................................................................................................................................................................................................................TAAAGAT--------GCGGTCAAGAAAA....2011.001010000
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--TAAAGAT--------GCGGTCAAGAAAA....2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................ATCAAGAG---TT--TAAAGAT--------GCG..............2011.001000001
..........................................................................................................................................................................................................................................................................................................................................ATGGAAAAATATCTAATCA...........................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................G---TT--TAAAGAT--------GCGGTCAAGAAAA....2311.001000001
............................................................................................................................................................................................................................................................................................................................................................AAGAG---TT--TAAAGAT--------GCGGTCAA.........2211.001010000
....................................................................................................................................................................................................................................................................................................................................................................TT--TAAAGAT--------GCGGTCAAGAA......2011.001000001
...........................................................................................................................................................................................................................................................................................................................................................CAAGAG---TT--TAAAGAT--------GCGGTCAAGAA......2611.001000001
.......................................................................................................................................................................................................................................................................................................................................................TAATCAAGAG---TT--TAAAGAT--------GCGGTC...........2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................T--TAAAGAT--------GCGGTCAAGAA......1911.001000001
.........................................................................................................................................................................................................................................................................................................................................................................AAAGAT--------GCGGTCAAGAAAAC...2011.001000001
................................................................................................................................................................................................................................................................................................................................................................G---TT--TAAAGAT--------GCGGTCAAGA.......2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................GAT--------GCGGTCAAGAAAACT..1811.001010000
.......................................................................................................................................................................................................................................................................................................................................................TAATCAAGAG---TT--TAAAGAT--------.................1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................AGAT--------GCGGTCAAGAAAACT..1911.001000001
..........................................................................................................................................................................................................................................................................................................................................................................AAGAT--------GCGGTCAAGAAAAC...1911.001000001
.................................................................................................................................................................................GGGTATAACTGTAGAGTTGCGGT................................................................................................................................................................................................23200.102000002
...........................................................................................................................CTGCCGGAGGAGAGC---CATACTGA--------------CA...................................................................................................................................................................................................................................25180.061100000
........................CTCTCTCGCACGCAC------------------------------------------T--------CTTT-GTC......................................................................................................................................................................................................................................................................................................23200.051000001
...................................................................................................................................................................................................................CT----CACAACGTTCCCCCTCGTTTTTG........................................................................................................................................................25200.051010000
.........................................................................................................................................................................................CTGTAGAGTTGCGGTGTC.............................................................................................................................................................................................18200.051010000
dp5
CGCACAGACCGATTTTCTGT----CTCTCTCGCACGCAC------------------------------------------T--------CTTT-GTCGTGT--CGTTTAATATTAATGGCGTCTGCCGGAGGAGAGC---CATACTGA--------------CATAGTAT-----CGGGTATAACTGTAGAGTTGCGGTGTCCGCAGCAACT----CACAACGTTCCCCCTCGTTTTTGTATATATTTTAAAATATA-------TAT--------TT-TTTTTTGTT-----ATATATTTTT-----------------------TAGGATGGAAAAATATCTAATCAAGAG---TT--TAAAGAT--------GCGGTCAAGAAAACTTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................CAGCAACT----CACAACGTTCCCCCTCG..............................................................................................................................................................25203.006000600000000
.......................................................................................................................................................................................................TGTCCGCAGCAACT----CACAACG........................................................................................................................................................................21202.705405301000000
..........GATTTTCTGT----CTCTCTCGCAC.....................................................................................................................................................................................................................................................................................................................................................................21202.254504500000000
.......................................................................................................................................................................GTAT-----CGGGTATAACTGTAGAGTTGC...................................................................................................................................................................................................25202.204400000004400
.............................................................................................T-GTCGTGT--CGTTTAATATTAATGG................................................................................................................................................................................................................................................................................2412.0020000000110
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--TAAAGAT--------GCGGTC...........1811.0010100000000
...................................................................................................................................................GA--------------CATAGTAT-----CGGGTATAACTGTAGAGT......................................................................................................................................................................................................2811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................ATCTAATCAAGAG---TT--TAAAGAT--------GCGGTC...........2811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--TAAAGAT--------GCGGTCAAG........2111.0010100000000
...................................................................................................................................................GA--------------CATAGTAT-----CGGGTATAACTGTAG.........................................................................................................................................................................................................2511.0010000000100
...............................................................................................................................................................................................................................................................................................................................................................AG---TT--TAAAGAT--------GCGGTCAAGAAAA....2411.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................AAGAT--------GCGGTCAAGAAAACTTG2211.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................TT--TAAAGAT--------GCGGTCAAGA.......1911.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................TAAAGAT--------GCGGTCAAGAAA.....1911.0010000001000
.................................................................................................................................................................................................................................................................................................................................................AATATCTAATCAAGAG---TT--TAAAGAT--------G................2611.0010000001000
...ACAGACCGATTTTCTGT----CTCTCTCGC.......................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................AGAG---TT--TAAAGAT--------GCGGTCA..........2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................TAAAGAT--------GCGGTCAAGAAAA....2011.0010000001000
...................................................................................................................................................................................................................................................................................................................................................TATCTAATCAAGAG---TT--TAAAGAT--------G................2411.0010000001000
........................................................................................................................................................................................................................................................................................................................................................AATCAAGAG---TT--TAAAGAT--------GCGGTCA..........2511.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................AAGAT--------GCGGTCAAGAAAACT..2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................ATCAAGAG---TT--TAAAGAT--------GCGGTC...........2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................CAAGAG---TT--TAAAGAT--------GCGGTC...........2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................AG---TT--TAAAGAT--------GCGGTCAA.........1911.0010000001000
....................................................................................................................................................................ATAGTAT-----CGGGTATAACTGTAGAGTTGC...................................................................................................................................................................................................2811.0010001000000
.........................................................................................................................................................................................................................................................................................................................................................ATCAAGAG---TT--TAAAGAT--------GCGGT............2211.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................AAAGAT--------GCGGTCAAGAAAACT..2111.0010100000000
...................................................................................................................................................................CATAGTAT-----CGGGTATAACTGTA..........................................................................................................................................................................................................2211.0010000000010
...........ATTTTCTGT----CTCTCTCGCACG....................................................................................................................................................................................................................................................................................................................................................................21200.551100000000110
......GACCGATTTTCTGT----CTCTCTC.........................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
...........................................................................................TTT-GTCGTGT--CGTTTAATATT.....................................................................................................................................................................................................................................................................................21200.501001000000000
............................................................................................TT-GTCGTGT--CGTTTAATATTAA...................................................................................................................................................................................................................................................................................2240.5020000000020
.......................................................................................................................................................................................................TGTCCGCAGCAACT----CACAAC.........................................................................................................................................................................20200.4590900000000
.................................................................................T--------CTTT-GTCGTGT--CGTTTAATA.......................................................................................................................................................................................................................................................................................21200.4080000000080
........................................................................................................................................................................TAT-----CGGGTATAACTGTAGAGT......................................................................................................................................................................................................21200.3060000000060
.............................................................................................T-GTCGTGT--CGTTTAATATTAA...................................................................................................................................................................................................................................................................................2140.2511000000000
..........................................................................................................................TCTGCCGGAGGAGAGC---CATACTGA--------------CA...................................................................................................................................................................................................................................2640.2510100000000
........CCGATTTTCTGT----CTCTCTCGCA......................................................................................................................................................................................................................................................................................................................................................................2240.2510000000010
.......................................................................................................................GCGTCTGCCGGAGGAGAGC---CA.........................................................................................................................................................................................................................................................21200.2550500000000
..............TTCTGT----CTCTCTCGCACGCA..................................................................................................................................................................................................................................................................................................................................................................20200.2040000000040
....................................................................................................................................................................................TATAACTGTAGAGTTGCGGTGT..............................................................................................................................................................................................22200.2040000000400
...............................................................................................................................CGGAGGAGAGC---CATACTGA--------------C....................................................................................................................................................................................................................................20200.2040300001000
.............TTTCTGT----CTCTCTCGCAC.....................................................................................................................................................................................................................................................................................................................................................................18200.2040400000000
.........CGATTTTCTGT----CTCTCTCGCACGC...................................................................................................................................................................................................................................................................................................................................................................2450.2010000000010
.........................................................................................................................................................................................................TCCGCAGCAACT----CACAACGTTC.....................................................................................................................................................................22200.2040400000000
.............................................................................................................................................................................................................CAGCAACT----CACAACGTTCCCC..................................................................................................................................................................21200.2040000000040
............................................................................................................................TGCCGGAGGAGAGC---CATACTGA--------------CA...................................................................................................................................................................................................................................2460.1710010000000
...................T----CTCTCTCGCACGCAC------------------------------------------T--------CTTT-.........................................................................................................................................................................................................................................................................................................21200.1530020001000
....................................CAC------------------------------------------T--------CTTT-GTCGTGT--CGTTTAATA.......................................................................................................................................................................................................................................................................................24200.1530000000300
..........................................................................................................................................................................T-----CGGGTATAACTGTAGAGTTGCGGTG...............................................................................................................................................................................................26200.1530000003000
...........................................................................................................................................................................................................CGCAGCAACT----CACAACGTTCC....................................................................................................................................................................21200.1530003000000
................................................................................................................................................................................CGGGTATAACTGTAGAGTTGCGGT................................................................................................................................................................................................24200.1530300000000
...................................................................................................................................................................................................GCGGTGTCCGCAGCAACT----CACA...........................................................................................................................................................................22200.1530300000000
......................................................................................................................................................................................TAACTGTAGAGTTGCGGTG...............................................................................................................................................................................................19200.1530300000000
.....................................................................................................................................................................TAGTAT-----CGGGTATAACTGTAG.........................................................................................................................................................................................................21200.1020000000020
....................................................................................................................................................................................TATAACTGTAGAGTTGCGGT................................................................................................................................................................................................20200.1020200000000
....................................................................................................................................................................................TATAACTGTAGAGTTGCGGTGTCCG...........................................................................................................................................................................................25200.1020200000000
................CTGT----CTCTCTCGCACGCAC------------------------------------------T--------CT............................................................................................................................................................................................................................................................................................................22200.1020200000000
..........................................................................................................................................................................................TGTAGAGTTGCGGTGTCCGC..........................................................................................................................................................................................20200.1020000020000
....................................................................................................................................................................................TATAACTGTAGAGTTGCGGTG...............................................................................................................................................................................................21200.0510000000001
...........................................................................................................................................................................................................................CAACGTTCCCCCTCGTTTTTG........................................................................................................................................................21200.0510100000000
.....................................................................................................................................................................TAGTAT-----CGGGTATAACTGT...........................................................................................................................................................................................................19200.0510100000000
..................................................................................................................................................................................GGTATAACTGTAGAGTTGC...................................................................................................................................................................................................19200.0510000001000
...................................GCAC------------------------------------------T--------CTTT-GTCGTGT--CGTTTAATAT......................................................................................................................................................................................................................................................................................26200.0510000000010
..................................CGCAC------------------------------------------T--------CTTT-GTCGTGT--CGTTTAA.........................................................................................................................................................................................................................................................................................24200.0510100000000
.........................TCTCTCGCACGCAC------------------------------------------T--------CTTT-GTC......................................................................................................................................................................................................................................................................................................22200.0510010000000
.................................................................................................................................................................................GGGTATAACTGTAGAGTTGC...................................................................................................................................................................................................20200.0511000000000
..............................CGCACGCAC------------------------------------------T--------CTTT-GTCGTGT--C...............................................................................................................................................................................................................................................................................................22200.0510100000000
.........................................................................................................................................................................................................TCCGCAGCAACT----CACAACGTT......................................................................................................................................................................21200.0510001000000
..............................CGCACGCAC------------------------------------------T--------CTTT-GTCGTGT--................................................................................................................................................................................................................................................................................................21200.0510100000000
.......................................................................................................................................................................................AACTGTAGAGTTGCGGTGTCCGCAGC.......................................................................................................................................................................................26200.0510100000000
.............................................................................................................................GCCGGAGGAGAGC---CATACTGA--------------C....................................................................................................................................................................................................................................22200.0510000000010
......................................................................................................................................................................AGTAT-----CGGGTATAACTGTAGAG.......................................................................................................................................................................................................22200.0510000000100
..........................................................................................................................................................................................................CCGCAGCAACT----CACAACGTTCCCCCTC...............................................................................................................................................................27200.0510010000000
.....................................................................................................................................................................................ATAACTGTAGAGTTGCGGTGTCCGCAG........................................................................................................................................................................................27200.0510000000100
......................................................................................................................GGCGTCTGCCGGAGGAGAGC---CATACT.....................................................................................................................................................................................................................................................26200.0510100000000
..................................................................................................................................................................................GGTATAACTGTAGAGTTGCGG.................................................................................................................................................................................................21200.0510000001000
........................................................................................................................CGTCTGCCGGAGGAGAGC---C..........................................................................................................................................................................................................................................................19200.0510001000000
........................................................................................................................CGTCTGCCGGAGGAGAGC---CATAC......................................................................................................................................................................................................................................................23200.0510100000000
................................................................................................................................................................................................................CAACT----CACAACGTTCC....................................................................................................................................................................16200.0510000000100
.................................................................................................................................................................................GGGTATAACTGTAGAGTTGCGGTG...............................................................................................................................................................................................24200.0510100000000
....................................................................................................................................................................................TATAACTGTAGAGTTGCGGTGTCCGCAG........................................................................................................................................................................................28200.0510100000000
..........................................................................................CTTT-GTCGTGT--CGTTTAATAT......................................................................................................................................................................................................................................................................................21200.0510000000100
...........................TCTCGCACGCAC------------------------------------------T--------CTTT-GTCGT....................................................................................................................................................................................................................................................................................................22200.0510100000000
..........................................................................................................................................................................T-----CGGGTATAACTGTAGAGTTG....................................................................................................................................................................................................21200.0510000010000
..........................................................................................CTTT-GTCGTGT--CGTTTAATATTA....................................................................................................................................................................................................................................................................................23200.0510000000100
droWil2
TG---------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAA-----AAAC---TGTCTAATTTTAAA-TAATCTTT-----ATTACTTTTA-----------------------CAGGATGGGAAAATTTCAAATCAAGAA---TT--TAAGGAC--------GCTGTAAAAAAAACGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................AA---TT--TAAGGAC--------GCTGTAAAAAA......2212.00220000
.............................................................................................................................................................................................................................................................................................................................................................AGAA---TT--TAAGGAC--------GCTGTAAAAAA......2412.00210100
..........................................................................................................................................................................................................................................................................................................................................................................AGGAC--------GCTGTAAAAAAAACGT.2112.00220000
....................................................................................................................................................................................................................................................................................................................................................................TT--TAAGGAC--------GCTGTAAAAAAAAC...2311.00101000
........................................................................................................................................................................................................................................................................................................................................................................TAAGGAC--------GCTGTAAAAAAAAC...2111.00110000
...................................................................................................................................................................................................................................................................................................................................................TTTCAAATCAAGAA---TT--TAAGGAC--------GCT..............2611.00110000
.............................................................................................................................................................................................................................................................................................................................................................AGAA---TT--TAAGGAC--------GCTGTAAAAAAAA....2611.00101000
...................................................................................................................................................................................................................................................................................................................................................TTTCAAATCAAGAA---TT--TAAGGAC--------GCC..............2611.00110000
.............................................................................................................................................................................................................................................................................................................................................................AGAA---TT--TAAGGAC--------GCTGTAA..........2011.00110000
..............................................................................................................................................................................................................................................................................................................................................................GAA---TT--TAAGGAC--------GCTGTAAAAA.......2211.00101000
....................................................................................................................................................................................................................................................................................................................................................TTCAAATCAAGAA---TT--TAAGGAC--------GCTGT............2711.00100100
.........................................................................................................................................................................................................................................................................................................................................................ATCAAGAA---TT--TAAGGAC--------GCT..............2011.00101000
.............................................................................................................................................................................................................................................................................................................................................................AGAA---TT--TAAGGAC--------GCTGTAAAA........2211.00110000
..............................................................................................................................................................................................................................................................................................................................................................GAA---TT--TAAGGAC--------GCTGTAAA.........2011.00110000
..........................................................................................................................................................................................................................................................................................................................................................................AGGAC--------GCTGTAAAAAAAACG..2011.00110000
.......................................................................................................................................................................................................................................................................................................................................................AAATCAAGAA---TT--TAAGGAC--------GCT..............2211.00110000
droVir3
TT---------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCAGACGTTTTATATCATT-------GAT--------AC-TTA-TACTT-----TTATATATTT-----------------------TAGGATGGAAAAATTTCAAACCAGGAG---TT--CAAGGAT--------GCTGTCAAAAAAACCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................AACCAGGAG---TT--CAAGGAT--------GCTGTC...........2413.003000000000000000000100110000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GGAG---TT--CAAGGAT--------GCTGTCAAA........2212.002000000000000000001010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAAACCAGGAG---TT--CAAGGAT--------.................2012.002000000000000000000200000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--CAAGGAT--------GCTGTCAAA........2112.002000000000000000001000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................GGAG---TT--CAAGGAT--------GCTGTCA..........2012.002001000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TT-------GAT--------AC-TTA-TACTT-----TTATAT.............................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CCAGGAG---TT--CAAGGAT--------GCTGTCAAA........2511.001000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AATTTCAAACCAGGAG---TT--CA..............................2011.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAAACCAGGAG---TT--CAAGGAT--------GC...............2211.001000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACCAGGAG---TT--CAAGGAT--------GCTGTCA..........2411.001000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AGGATGGAAAAATTTCAAA..............................................1911.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAAACCAGGAG---TT--CAAGGAT--------GCT..............2311.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GGAG---TT--CAAGGAT--------GCTGT............1811.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TTCAAACCAGGAG---TT--CAAGGAT--------GCT..............2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................T--CAAGGAT--------GCTGTCAAAAAA.....2011.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AGGAG---TT--CAAGGAT--------GCTGTC...........2011.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--CAAGGAT--------GCTGTCA..........1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTTCAAACCAGGAG---TT--CAAG............................2011.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AAAAATTTCAAACCAGGAG---TT--CAAGGAT--------.................2811.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTTCAAACCAGGAG---TT--CAAGGAT--------G................2411.001000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CCAGGAG---TT--CAAGGAT--------GCTGTC...........2211.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AACCAGGAG---TT--CAAGGAT--------GCT..............2111.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AACCAGGAG---TT--CAAGGAT--------.................1811.001000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AAAATTTCAAACCAGGAG---TT--................................2011.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAACCAGGAG---TT--CAAGGAT--------.................1911.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AGGAG---TT--CAAGGAT--------GCTGTCA..........2111.001000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GGAG---TT--CAAGGAT--------GCTGTCAAAA.......2311.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AATTTCAAACCAGGAG---TT--CAAGGA..........................2411.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACCAGGAG---TT--CAAGGAT--------G................1811.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TCAAACCAGGAG---TT--CAAGGA..........................2011.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TTCAAACCAGGAG---TT--CAAGGAT--------.................2211.001000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AACCAGGAG---TT--CAAGGAT--------GCTGTCAAA........2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTTCAAACCAGGAG---TT--CAAGGAT--------.................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CCAGGAG---TT--CAAGGAT--------GCTGTCAA.........2411.001000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAACCAGGAG---TT--CAAGGAT--------GCTGTC...........2511.001000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAACCAGGAG---TT--CAAGGAT--------G................2011.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TCAAACCAGGAG---TT--CAAGGAT--------GCTG.............2511.001000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GGATGGAAAAATTTCAAACCAGGAG---TT--CA..............................2911.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................GATGGAAAAATTTCAAACCAGGAG---TT--C...............................2711.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AGGAG---TT--CAAGGAT--------GCTGTCAA.........2211.001000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CAGGAG---TT--CAAGGAT--------GCT..............1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CAGGAG---TT--CAAGGAT--------GCTGTC...........2111.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AACCAGGAG---TT--CAAGGAT--------GCTGTCA..........2511.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACCAGGAG---TT--CAAGGAT--------GCTG.............2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AGGAT--------GCTGTCAAAAAAACC..2011.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
AA---------------AT-AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------AT-TATTTTTTT-----TGTTTCGTTA-----------------------TAGGATGGAAAAATTTCAAATCAGGAA---TT--CAAAGAT--------GCTGTTAAAAAAACCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................TTTCAAATCAGGAA---TT--CAAAG...........................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................TCAAATCAGGAA---TT--CAAAGAT--------GCT..............2411.001000001
....................................................................................................................................................................................................................................................................................................................................................TTCAAATCAGGAA---TT--CAAAG...........................2011.001100000
droGri2
TT---------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAC-ATAAT--ATATATA---TAT--------ATT-TTTT-TTT-----TCGTATCTGT-----------------------AAAACTAGTGCAGCTTTTTAAAGAGTA---TT--TAAAAAG--------TCGATAAAAAAGA----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TT---------------TT-TAT--------------------------------------------------ATATTTTACACCTTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAGATC-------TAT------------------AT-----TTAATTATTT-----------------------TAGGATGGAAAAATATCGAATCAAGAA---TT--TAAAGAT--------GCGGTTAAAAAAACATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................AGAA---TT--TAAAGAT--------GCGGTTAAAAA......2412.002000002
.................................................................................................................................................................................................................................................................................................................................................AATATCGAATCAAGAA---TT--TAAAG...........................2311.001000001
.....................................................................................................................................................................................................................................................................................................................................................................T--TAAAGAT--------GCGGTTAAAAAA.....2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................ATCAAGAA---TT--TAAAGAT--------GCGGT............2211.001000001
.....................................................................................................................................................................................................................................................................................................................................................................T--TAAAGAT--------GCGGTTAAAAA......1911.001000001
..............................................................................................................................................................................................................................................................................................................................................................GAA---TT--TAAAGAT--------GCGGTTAAAAAA.....2411.001000010
........................................................................................................................................................................................................................................................................................................................................GGATGGAAAAATATCGAATCAAGA........................................2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................GAA---TT--TAAAGAT--------GCGGTTAA.........2011.001100000
droBip1
GC---------------GA-CTC-------------------------------------ATCCCTTTTTTATTTGATTTATATTATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATATA-------------TT------------ATT-----AAATATTATTATAAAGTTAAAATTTTATTATTTCAGGATGGTAAAATATCCAATCAAGAA---TT--TAAAGAT--------GCGGTAAAGAAAACATGSizeHit CountTotal NormTotal
No Reads
droKik1
AG---------------GT-AAA----------------------------------A-----------------------------------------------------------------------------------TGTAATGA--------------AATAATATCTGCAAGGGTATA---CAAACTTCGGCGT-----------GCCGAAGTTAGCTTCCTTTCTTGTTTATATATA--TTTTGAT--ATATTTT---TAT--------ATT-TTTA-TTTTT---ATATATATTT-----------------------T-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AA---------------CT-CAT----------------------------------ATCATCC----------------GC------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAAAATGTTATATT--AAGTAAT--ATAAACTAAATAG--------AT-TGTTTTAAT-----TT-ATCTTTT-----------------------TAGGATGGAAAAATATCAAATCAGGAG---TT--CAAGGAT--------GCAGTAAA-AAAACATGSizeHit CountTotal NormTotal
No Reads
droEle1
AG---------------AT-AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT--------AT-TTGTTTAAT-----ATATTCTTTT-----------------------TAGGATGGAAAAATATCTAACCAAGAG---TT--TAAAGAT--------GCAGTAAAAAAAACTTGSizeHit CountTotal NormTotal
No Reads
droRho1
AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-----CGGGTATC---TGATAGTCGGGCCA----------CCCGACTATAGAGTTCTCTCTTGTTTTAATATATATTTAT----ATA-------TAT--------AT-TTA-TATTT-----ATATTTATTT-----------------------TA----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AT---------------TT-AAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACAT------------------TTT--------ACT-TTGTTTAT-----TTATTCTTTT-----------------------AAGGATGGAAAAATATCTAATCAAGAA---TT--TAAAGAT--------GCAGTAAAAAAAACTTGSizeHit CountTotal NormTotal
No Reads
droTak1
TC---------------TAT----CTCCCTCGCACTCCC------------------------------------------T----------TTAGCTGAGTTACGATTATTAGTCGGGACACCAACCCGAGTACAGCGTTCGCACTCCCTTAAG--------CTGAGTGA-----CGGGTATT---AGATAGTCGGGAC------AACAACCCGACTATAGCGTTCTCTCTTGTTTTTGCATATATTTTGCATATTT-------CCT--------AT-ATG-CATCCGAAT-TT-ATTACAT-----------------------TTGAAAAATATGACACCTACCTAGAAATTTTTGGAAAAAAT--------AGGACCAAAAAAA----SizeHit CountTotal NormTotal
No Reads
droEug1
CT---------------AT-AAGCATACTCAACATACTTCCTCTGACAATAGGTGGCG-------CCTTGT--GAATTTCCA----------CTAGCAAAATTAATATT----------------------------------------TTAAAATTGTGTAAAACAGTAA-----CGGGTATC---TTATAGTCGCGGCA----------CTCGACTATAGCGTTTCCTCTTGTTTTTATATATTTTTTC----TTC-------TCT--------CT-TTT-------------TTTTTTTT-----------------------T-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CA---------------GC-AGC-------------------------------------TTAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAATGTTCCTTATCATATA-------TAA--------AT-TTA-ATCTT-----ATATATATTT-----------------------AAGTACT-AAAACTAAAAAATTAACTA---CT--TAAAAAAAATGACCAACTGTAA---AAAAAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
TA---------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-----ATATAAC---TGT--------ATT-TTCAATTT-----AAATACTTTC-----------------------TAGGATGGCAAAATATCCAATCAAGAA---TT--TAAGGAT--------GCTGTAAAAAAAACATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................TCAAGAA---TT--TAAGGAT--------GCTGTAAAAAAAA....2912.00200000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................T--TAAGGAT--------GCTGTAAAAAAAACAT.2412.00200000000200000000
.............................................................................................................................................................................................................................................................................................................TC-----------------------TAGGATGGCAAAATATCCAATCAAGA........................................2811.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................A---TT--TAAGGAT--------GCTGTAAAAAAAACA..2511.00100100000000000000
........................................................................................................................................................................................................................................................................................................TACTTTC-----------------------TAGGATGGCAAAATATC.................................................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................TAAGGAT--------GCTGTAAAAAAAACAT.2311.00100000001000000000
droSec2
TA---------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT-----ATATAAC---TGT--------ATT-TTCAATTT-----AAATACTTTC-----------------------TAGGATGGCAAAATATCCAATCAAGAA---TT--TAAGGAT--------GCTGTAAAAAAAACATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................ATCAAGAA---TT--TAAGGAT--------GCTGT............2211.0010100
............................................................................................................................................................................................................................................................................................................................................................AAGAA---TT--TAAGGAT--------GCTGTAAAAAA......2511.0010100
droYak3
AC---------------TA---------------------------------------------------------------------------------------------------------------------------------G--------------CTGAGTAA-----CGGGTATC---AGATAGTCGGGGAA----------CTCGACTATAGCGTTCTCTCTTGTTTTTTTATATATTTATGA----A-------AAT--------GA-TTA-AACTTGT--TGCTAATTATTC----------------------AAACCTGAAAATTTTCTAATTCAATGA---TT--TAGAG---------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AT---------------AT-AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAATATAT-AC---TGT--------ATT-TTAATTTT-----AAATATTTTT-----------------------TAGGATGGCAAAATATCCAATCAAGAG---TT--TAAGGAT--------GCTGTAAAAAAAACATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................AGAG---TT--TAAGGAT--------GCTGTAA..........2012.0021000100
.........................................................................................................................................................................................................................................................................................................................................................ATCAAGAG---TT--TAAGGAT--------GCTGTAAAAA.......2711.0010000100
...............................................................................................................................................................................................................................................................................................................................................................AG---TT--TAAGGAT--------GCTGTAAA.........1911.0010000100
..............................................................................................................................................................................................................................................................................................................................................................GAG---TT--TAAGGAT--------GCTGTAAA.........2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................T--TAAGGAT--------GCTGTAAAAAA......1911.0010000100
...........................................................................................................................................................................................................................................................................................................................................................CAAGAG---TT--TAAGGAT--------GCT..............1811.0010000010

Generated: 06/08/2015 at 05:08 PM