ID:

dpe_20

 Coordinate:

scaffold_9:1042527-1042603 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.6 -27.5 -27.5

Flybase annnotation

utr5 [utr5_plus_8998]

No Repeatable elements found

Sense Strand Reads

CTATAAGACGTGTAAAACTCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCTTAACAATAAGACTATGTTAAAATGAG

***********************************.(((...((((((.((((((((((..(((.((((.((((((((..((((....)))))))))).....)).)))).)))..))))))))))))))))...)))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V057

head

 V050

head

 M042

female body

 V111

male body		 M021

embryo
..................................................TTGGGATTTTTTAGATCAGCAG......................................................................................................... 22 0 1 2903.00 2903 1515 1329 32 27 0
................................................AGTTGGGATTTTTTAGATCAGC........................................................................................................... 22 0 1 1640.00 1640 866 745 11 13 5
..................................................TTGGGATTTTTTAGATCAGC........................................................................................................... 20 0 1 1546.00 1546 947 572 12 7 8
................................................AGTTGGGATTTTTTAGATCAGCA.......................................................................................................... 23 0 1 1386.00 1386 732 637 14 3 0
................................................AGTTGGGATTTTTTAGATCAGCAG......................................................................................................... 24 0 1 1321.00 1321 540 761 8 12 0
...................................................TGGGATTTTTTAGATCAGCAGT........................................................................................................ 22 0 1 1016.00 1016 569 424 5 18 0
..................................................TTGGGATTTTTTAGATCAGCA.......................................................................................................... 21 0 1 902.00 902 562 328 10 2 0
...................................................TGGGATTTTTTAGATCAGCAG......................................................................................................... 21 0 1 726.00 726 422 289 11 4 0
................................................AGTTGGGATTTTTTAGATCAG............................................................................................................ 21 0 1 677.00 677 423 243 0 11 0
.................................................GTTGGGATTTTTTAGATCAGC........................................................................................................... 21 0 1 586.00 586 281 287 7 11 0
..................................................TTGGGATTTTTTAGATCAGCAGT........................................................................................................ 23 0 1 321.00 321 170 147 1 3 0
........................................................................................................TACTGGCCTACTAAGTCCCAAC................................................... 22 0 1 190.00 190 85 81 24 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAA.................................................... 21 0 1 140.00 140 77 49 14 0 0
........................................................................................................TACTGGCCTACTAAGTCCCA..................................................... 20 0 1 113.00 113 64 39 10 0 0
................................................AGTTGGGATTTTTTAGATCA............................................................................................................. 20 0 1 101.00 101 72 26 1 2 0
..................................................TTGGGATTTTTTAGATCAGCAGA........................................................................................................ 23 1 1 75.00 75 43 30 0 2 0
..................................................TTGGGATTTTTTAGATCAG............................................................................................................ 19 0 1 55.00 55 34 17 4 0 0
.....................ATTGGAATAGTTGTCTGCAAC....................................................................................................................................... 21 3 3 50.67 152 5 1 129 16 1
...................................................TGGGATTTTTTAGATCAGCA.......................................................................................................... 20 0 1 49.00 49 26 19 4 0 0
................................................AGGTGGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 44.00 44 35 9 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCAGT........................................................................................................ 25 0 1 43.00 43 20 23 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAA......................................................................................................... 22 1 1 40.00 40 24 16 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGTT....................................................................................................... 24 0 1 39.00 39 25 14 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGTT....................................................................................................... 23 0 1 38.00 38 22 16 0 0 0
.................................................GTTGGGATTTTTTAGATCAG............................................................................................................ 20 0 1 36.00 36 16 19 0 1 0
.........................................................................................................ACTGGCCTACTAAGTCCCAACAT................................................. 23 0 1 35.00 35 20 14 1 0 0
...................................................TGGGATTTTTTAGATCAGC........................................................................................................... 19 0 1 30.00 30 14 15 1 0 0
................................................AGTTGGGATTTTTTAGATCAGCAT......................................................................................................... 24 1 1 30.00 30 18 12 0 0 0
..................................................TTGGGATTTTTTAGATCATCAG......................................................................................................... 22 1 1 29.00 29 21 8 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAACA.................................................. 22 0 1 27.00 27 18 7 2 0 0
................................................AGTTGGGATTTTTTAGATCAGCT.......................................................................................................... 23 1 1 24.00 24 20 4 0 0 0
................................................AGGTGGGATTTTTTAGATCAGCA.......................................................................................................... 23 1 1 22.00 22 16 6 0 0 0
................................................AGTTGGGATTTTTTATATCAGC........................................................................................................... 22 1 1 22.00 22 14 8 0 0 0
..................................................TTGGGATTTTTTAGATCATC........................................................................................................... 20 1 1 22.00 22 14 8 0 0 0
................................................AGTTGGGATTTTTTAGATCATC........................................................................................................... 22 1 1 20.00 20 16 4 0 0 0
..................................................TTGGGATTTTTTAGATCA............................................................................................................. 18 0 1 19.00 19 15 4 0 0 0
................................................AGGTGGGATTTTTTAGATCAG............................................................................................................ 21 1 1 18.00 18 18 0 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAT......................................................................................................... 22 1 1 18.00 18 16 2 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGA........................................................................................................ 22 1 1 17.00 17 10 7 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCC...................................................... 19 0 1 16.00 16 10 6 0 0 0
................................................AGATGGGATTTTTTAGATCAGCA.......................................................................................................... 23 1 1 16.00 16 13 3 0 0 0
..................................................TTGGGGTTTTTTAGATCAGCAG......................................................................................................... 22 1 1 15.00 15 12 3 0 0 0
.........................................................................TATTGCTATACAGCCGTATTAAT................................................................................. 23 0 1 15.00 15 8 7 0 0 0
................................................AGGTGGGATTTTTTAGATCAGCAG......................................................................................................... 24 1 1 15.00 15 12 3 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGC........................................................................................................ 23 1 1 13.00 13 6 7 0 0 0
..................................................TTGGGATTTTTTATATCAGC........................................................................................................... 20 1 1 13.00 13 9 4 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAC......................................................................................................... 22 1 1 13.00 13 9 4 0 0 0
................................................AGTTGGGATTTTTTAGATCATCAG......................................................................................................... 24 1 1 13.00 13 9 4 0 0 0
................................................AGTTGAGATTTTTTAGATCAGCAG......................................................................................................... 24 1 1 12.00 12 0 12 0 0 0
..................................................TTGGGATTTTTTAGATCACCAG......................................................................................................... 22 1 1 12.00 12 7 5 0 0 0
..................................................TTGGGATTTTTTAGATAAGCAG......................................................................................................... 22 1 1 12.00 12 12 0 0 0 0
................................................AGTTGAGATTTTTTAGATCAGC........................................................................................................... 22 1 1 11.00 11 1 10 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGC........................................................................................................ 22 1 1 11.00 11 8 3 0 0 0
................................................AGATGGGATTTTTTAGATCAG............................................................................................................ 21 1 1 11.00 11 7 4 0 0 0
................................................AGTTGGGATTTTTTAGATCATCA.......................................................................................................... 23 1 1 11.00 11 9 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCT.......................................................................................................... 21 1 1 11.00 11 10 0 0 1 0
...................................................TGGGAGTTTTTAGATCAGCAGT........................................................................................................ 22 1 1 11.00 11 7 4 0 0 0
..................................................TTGGGATTTTTTAGATCATCA.......................................................................................................... 21 1 1 11.00 11 6 5 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCAGA........................................................................................................ 25 1 1 11.00 11 7 4 0 0 0
.................................................GTTGGGATTTTTTAGATCATC........................................................................................................... 21 1 1 11.00 11 9 2 0 0 0
.................................................GTTGGGATTTTTTAGATCA............................................................................................................. 19 0 1 11.00 11 7 4 0 0 0
..................................................TTGGGATTTTTTAGATCAGTAG......................................................................................................... 22 1 1 10.00 10 9 1 0 0 0
.....................ATTGGAATAGTTGTCTGCA......................................................................................................................................... 19 2 3 10.00 30 0 1 29 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAA.................................................... 20 0 1 10.00 10 6 4 0 0 0
.................................................GGTGGGATTTTTTAGATCAGC........................................................................................................... 21 1 1 10.00 10 8 2 0 0 0
..................................................TGGGATTTTTTTAGATCAGCAGT........................................................................................................ 23 3 1 9.00 9 3 5 0 1 0
..................................................TTGGGATTTTTTATATCAGCAG......................................................................................................... 22 1 1 9.00 9 7 2 0 0 0
..................................................TTGGGATTTTTTAGATCACC........................................................................................................... 20 1 1 9.00 9 6 3 0 0 0
...................................................TGGGATTTTTTAGATAAGCAGT........................................................................................................ 22 1 1 9.00 9 7 2 0 0 0
................................................AGCTGGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 9.00 9 6 3 0 0 0
..................................................TTGGGCTTTTTTAGATCAGCA.......................................................................................................... 21 1 1 8.00 8 5 3 0 0 0
................................................AGTTGGGATTTTTTATATCAGCA.......................................................................................................... 23 1 1 8.00 8 4 4 0 0 0
..................................................TTGGGCTTTTTTAGATCAGCAG......................................................................................................... 22 1 1 8.00 8 6 2 0 0 0
..................................................TTGGGATTTTTTAGCTCAGC........................................................................................................... 20 1 1 8.00 8 4 4 0 0 0
..................................................TTGAGATTTTTTAGATCAGCAG......................................................................................................... 22 1 1 8.00 8 1 7 0 0 0
................................................AGTTGGGATTTTTTATATCAG............................................................................................................ 21 1 1 8.00 8 6 2 0 0 0
......................TTGGAATAGTTGTCTGCAAC....................................................................................................................................... 20 3 4 7.25 29 0 0 29 0 0
.................................................GTTGGGATTTTTTAGATCAGCAG......................................................................................................... 23 0 1 7.00 7 3 3 1 0 0
..................................................TTGGGGTTTTTTAGATCAGCA.......................................................................................................... 21 1 1 7.00 7 5 2 0 0 0
.................................................GCTGGGATTTTTTAGATCAGC........................................................................................................... 21 1 1 7.00 7 3 4 0 0 0
................................................AGGTGGGATTTTTTATATCAGC........................................................................................................... 22 2 1 7.00 7 5 2 0 0 0
................................................AGTTGGGATTTTTTAGATCACC........................................................................................................... 22 1 1 7.00 7 7 0 0 0 0
..................................................TTGGGGTTTTTTAGATCAGC........................................................................................................... 20 1 1 7.00 7 7 0 0 0 0
................................................AGTTGGGGTTTTTTAGATCAGCAG......................................................................................................... 24 1 1 7.00 7 7 0 0 0 0
..................................................TTGGGATTTTTTAGATCAGCG.......................................................................................................... 21 1 1 7.00 7 4 3 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCAC......................................................................................................... 24 1 1 7.00 7 4 3 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCAA......................................................................................................... 24 1 1 7.00 7 4 3 0 0 0
................................................AGTTGGGGTTTTTTAGATCAGCA.......................................................................................................... 23 1 1 7.00 7 5 2 0 0 0
..................................................TTGGGAGTTTTTAGATCAGCAG......................................................................................................... 22 1 1 7.00 7 5 2 0 0 0
................................................AGTTGGGATTTTTTATATCAGCAG......................................................................................................... 24 1 1 7.00 7 2 5 0 0 0
..................................................TTGGGATTTTTTAGATCTGCAG......................................................................................................... 22 1 1 7.00 7 5 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCGG......................................................................................................... 22 1 1 7.00 7 3 4 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAACT.................................................. 23 1 1 7.00 7 3 3 1 0 0
..................................................TTGGGATTTTTTAGATCAGCCG......................................................................................................... 22 1 1 7.00 7 5 2 0 0 0
................................................AGATGGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 7.00 7 6 1 0 0 0
.........................................................................................................ACTGGCCTACTAAGTCCCAAC................................................... 21 0 1 7.00 7 4 2 1 0 0
................................................AGTTGGGCTTTTTTAGATCAGC........................................................................................................... 22 1 1 6.00 6 6 0 0 0 0
................................................TGTTGGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 6.00 6 4 1 0 1 0
..................................................GTGGGATTTTTTAGATCAGC........................................................................................................... 20 1 1 6.00 6 5 1 0 0 0
..................................................TTAGGATTTTTTAGATCAGCAG......................................................................................................... 22 1 1 6.00 6 2 4 0 0 0
................................................AGTTGGGATTTTTTAGATCACCAG......................................................................................................... 24 1 1 6.00 6 3 3 0 0 0
...................................................TGGGATTTTTTAGATCATCAGT........................................................................................................ 22 1 1 6.00 6 3 3 0 0 0
......................TTGGAATAGTTGTCTGCAACC...................................................................................................................................... 21 3 1 6.00 6 0 0 5 1 0
.................................................GTTGGGATTTTTTAGATCAGCA.......................................................................................................... 22 0 1 6.00 6 2 2 0 2 0
..................................................TTGGGATTTTTTAGATCAGT........................................................................................................... 20 1 1 6.00 6 6 0 0 0 0
...................................................TGGGATTTTTTATATCAGCAGT........................................................................................................ 22 1 1 6.00 6 4 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCTG......................................................................................................... 22 1 1 6.00 6 5 1 0 0 0
..................................................TTGGGAGTTTTTAGATCAGC........................................................................................................... 20 1 1 5.00 5 5 0 0 0 0
................................................AGGTGGGATTTTTTAGATCAGCAT......................................................................................................... 24 2 1 5.00 5 5 0 0 0 0
................................................AGTTGGGATTTTTTAAATCAGC........................................................................................................... 22 1 1 5.00 5 2 3 0 0 0
..................................................TTGGGATTTTTTAGATCAGTA.......................................................................................................... 21 1 1 5.00 5 5 0 0 0 0
..................................................TTGGGCTTTTTTAGATCAGC........................................................................................................... 20 1 2 5.00 10 6 4 0 0 0
........................................................................TTATTGCTATACAGCCGTATT.................................................................................... 21 0 1 5.00 5 5 0 0 0 0
..................................................TTGGGGTTTTTTAGATCAGCTG......................................................................................................... 22 2 1 5.00 5 5 0 0 0 0
..................................................TTGGGATTTTTTATATCAGCA.......................................................................................................... 21 1 1 5.00 5 3 2 0 0 0
..................................................TTGGGATTGTTTAGATCAGCAG......................................................................................................... 22 1 1 5.00 5 2 0 3 0 0
................................................AGTTGGGATTTTTTAGATCAGCTG......................................................................................................... 24 1 1 5.00 5 2 3 0 0 0
...................................................TGGGACTTTTTAGATCAGCAGT........................................................................................................ 22 1 1 5.00 5 3 2 0 0 0
................................................AGTTGGGATTTTTTAGAGCAGC........................................................................................................... 22 1 1 5.00 5 3 2 0 0 0
..................................................TTAGGATTTTTTAGATCAGC........................................................................................................... 20 1 1 5.00 5 3 2 0 0 0
..................................................TTGGGATTTTTTAGCTCAGCA.......................................................................................................... 21 1 1 5.00 5 3 2 0 0 0
...................................................TGGGAGTTTTTAGATCAGCAG......................................................................................................... 21 1 1 5.00 5 4 1 0 0 0
..................................................TTGGGATTTTGTAGATCAGCAG......................................................................................................... 22 1 1 5.00 5 5 0 0 0 0
.....................ATTGGAATAGTTGTCTGCAACC...................................................................................................................................... 22 3 1 5.00 5 0 1 1 0 3
..................................................TTGGGATGTTTTAGATCAGC........................................................................................................... 20 1 1 5.00 5 2 3 0 0 0
................................................AGTTGGGATTTTTTAGATC.............................................................................................................. 19 0 1 5.00 5 1 2 1 0 1
....................CATTGGAATAGTTGTCTGCAC........................................................................................................................................ 21 3 2 4.50 9 0 1 8 0 0
...................................................TGGGATTTTTTAGATCAGCGGT........................................................................................................ 22 1 1 4.00 4 3 1 0 0 0
..................................................TTGGGATTTTTTAGAGCAGCAG......................................................................................................... 22 1 1 4.00 4 2 2 0 0 0
...................................................TGGGATTTTTTAGATCAGCTG......................................................................................................... 21 1 1 4.00 4 3 1 0 0 0
.........................................................................TATTGCTATACAGCCGTATT.................................................................................... 20 0 1 4.00 4 3 1 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCCAACA.................................................. 23 0 1 4.00 4 3 0 1 0 0
..................................................TGGGGATTTTTTAGATCAGC........................................................................................................... 20 1 1 4.00 4 3 1 0 0 0
..................................................TTGGGATTTTTTAGATCCGCAG......................................................................................................... 22 1 1 4.00 4 3 1 0 0 0
................................................AGTTGCGATTTTTTAGATCAGCA.......................................................................................................... 23 1 1 4.00 4 1 3 0 0 0
................................................AGTTGGGCTTTTTTAGATCAGCA.......................................................................................................... 23 1 1 4.00 4 2 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCACT........................................................................................................ 23 1 1 4.00 4 3 1 0 0 0
...................................................TGGGATTTTTTATATCAGCAG......................................................................................................... 21 1 1 4.00 4 2 2 0 0 0
..................................................TTGGGATGTTTTAGATCAGCAG......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0
................................................AGGTGGGATTTTTTAGATCATCA.......................................................................................................... 23 2 1 4.00 4 3 1 0 0 0
...................................................TGGGATTTTTTAGATCAGCCGT........................................................................................................ 22 1 1 4.00 4 2 2 0 0 0
................................................AGATGGGATTTTTTAGATCAGCAG......................................................................................................... 24 1 1 4.00 4 4 0 0 0 0
...........................................................................................................TGGCCTACTAAGTCCCAACATT................................................ 22 1 1 4.00 4 4 0 0 0 0
..................................................TGGGGATTTTTTAGATCAGCAG......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0
................................................AGCTGGGATTTTTTAGATCAGCA.......................................................................................................... 23 1 1 4.00 4 4 0 0 0 0
................................................AGCTGGGATTTTTTAGATCAG............................................................................................................ 21 1 1 4.00 4 4 0 0 0 0
..................................................TCGGGATTTTTTAGATCAGCAG......................................................................................................... 22 1 1 4.00 4 3 1 0 0 0
..................................................TTGGGATTTGTTAGATCAGCAG......................................................................................................... 22 1 1 4.00 4 2 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGAT....................................................................................................... 24 1 1 4.00 4 3 1 0 0 0
..................................................TTGGGATTTTTTAGATCATCAT......................................................................................................... 22 2 1 4.00 4 4 0 0 0 0
..................................................TTGGGATTTTTTAGATCCGC........................................................................................................... 20 1 1 4.00 4 3 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGA........................................................................................................... 20 1 1 4.00 4 3 1 0 0 0
................................................AGTTGGGATTTTTTAGATAAGC........................................................................................................... 22 1 1 4.00 4 2 2 0 0 0
...................................................TGGGGTTTTTTAGATCAGCAGT........................................................................................................ 22 1 1 4.00 4 3 0 0 1 0
..................................................TTGGGATTTTTTAGATAAGCA.......................................................................................................... 21 1 1 4.00 4 3 1 0 0 0
................................................AGTTAGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 4.00 4 1 3 0 0 0
..................................................TTGGGATTTTTTAGATCAGCC.......................................................................................................... 21 1 1 4.00 4 2 2 0 0 0
..................................................TTGAGATTTTTTAGATCAGC........................................................................................................... 20 1 1 4.00 4 3 1 0 0 0
...................................................TGGGATTTTTTAGCTCAGCAGT........................................................................................................ 22 1 1 4.00 4 2 2 0 0 0
................................................AGGTGGGAGTTTTTAGATCAGCA.......................................................................................................... 23 2 1 4.00 4 4 0 0 0 0
................................................AGTTGGGATTTTTTAGAT............................................................................................................... 18 0 1 4.00 4 2 2 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGAT....................................................................................................... 23 1 1 4.00 4 3 1 0 0 0
................................................AGTTGGGGTTTTTTAGATCAGC........................................................................................................... 22 1 1 4.00 4 3 1 0 0 0
...................................................TGGGAGTGTTTAGATCAGCAGT........................................................................................................ 22 2 1 4.00 4 3 1 0 0 0
.................................................GTCGGGATTTTTTAGATCAGC........................................................................................................... 21 1 1 4.00 4 4 0 0 0 0
................................................AGATGGGATTTTTTAGATCATC........................................................................................................... 22 2 1 4.00 4 3 1 0 0 0
...................................................TGGGCTTTTTTAGATCAGCAGT........................................................................................................ 22 1 1 4.00 4 3 1 0 0 0
...................................................TGAGATTTTTTAGATCAGCAGT........................................................................................................ 22 1 1 4.00 4 1 3 0 0 0
..................................................TTGGGATTTTTTAGATCACCA.......................................................................................................... 21 1 1 4.00 4 2 2 0 0 0
..................................................TTGCGATTTTTTAGATCAGC........................................................................................................... 20 1 1 4.00 4 3 1 0 0 0
................................................AGGTGGGATTTTTTAGATCATC........................................................................................................... 22 2 1 4.00 4 4 0 0 0 0
................................................AGTTGGGATTTTTTAGCTCAGCA.......................................................................................................... 23 1 1 4.00 4 3 1 0 0 0
................................................AGTTGGGATTTTTTACATCAGC........................................................................................................... 22 1 1 4.00 4 3 1 0 0 0
....................CATTGGAATAGTTGTCTGCA......................................................................................................................................... 20 3 10 3.80 38 0 0 36 2 0
.....................ATTGGAATAGTTGTCTGC.......................................................................................................................................... 18 2 9 3.33 30 0 1 29 0 0
................................................AGTTGCGATTTTTTAGATCAGC........................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
..................................................CTGGGATTTTTTAGATCAGCAGT........................................................................................................ 23 1 1 3.00 3 0 3 0 0 0
..................................................TTGGGATTTGTTAGATCAGC........................................................................................................... 20 1 1 3.00 3 3 0 0 0 0
..................................................TTAAGATTTTTTAGATCAGCAG......................................................................................................... 22 2 1 3.00 3 0 3 0 0 0
..................................................TTGGGATTTTTTATATCAGCAGT........................................................................................................ 23 1 1 3.00 3 3 0 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCG.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
...................................................TGGGATTTTTTAGAGCAGCAG......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
.................................................GTTGGGACTTTTTAGATCAGC........................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
...................................................TGGGCTTTTTTAGATCAGCAG......................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
...................................................TGGGATTGTTTAGATCAGCAGT........................................................................................................ 22 1 1 3.00 3 3 0 0 0 0
..................................................TTGGGATTTTTTGGATCAGCAG......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTTTCGATCAGCA.......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................AGTTGGGATTTTTTAGATCAGA........................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
................................................AGTTGGGTTTTTTTAGATCAGCAG......................................................................................................... 24 1 1 3.00 3 1 2 0 0 0
................................................AGTTGGGGTTTTTTAGATCAG............................................................................................................ 21 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGCTT......................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
..................................................GTGGGATTTTTTAGATCAGCA.......................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGAGTTTTTAGATCAGCAGT........................................................................................................ 23 1 1 3.00 3 3 0 0 0 0
...................................................TGGGATTTTTTCGATCAGCAGT........................................................................................................ 22 1 1 3.00 3 2 1 0 0 0
...................................................TAGGATTTTTTAGATCAGCAGT........................................................................................................ 22 1 1 3.00 3 1 2 0 0 0
..................................................TTGGGATTTTTTAGATCAGCCT......................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
.................................................GATGGGATTTTTTAGATCAGC........................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................TTGGAATTTTTTAGATCAGCAG......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
................................................AGTTGGGATTTTTTAAATCAGCA.......................................................................................................... 23 1 1 3.00 3 2 1 0 0 0
................................................AGTTGGGAGTTTTTAGATCAGC........................................................................................................... 22 1 1 3.00 3 2 0 1 0 0
................................................AGTTGGGATTTTTTAGATCAT............................................................................................................ 21 1 1 3.00 3 3 0 0 0 0
..................................................TTGGGATTTTTTAAATCAGCAG......................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
........................................................................................................TACTGGCCTACTAAGTCC....................................................... 18 0 1 3.00 3 3 0 0 0 0
...................................................CGGGATTTTTTAGATCAGCAG......................................................................................................... 21 1 1 3.00 3 1 2 0 0 0
..................................................TTGGGATTTTTTAGACCAGC........................................................................................................... 20 1 1 3.00 3 1 2 0 0 0
..................................................TTGGGATTTTTTAGATCCGCA.......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................AGTTGGGACTTTTTAGATCAGCA.......................................................................................................... 23 1 1 3.00 3 1 2 0 0 0
................................................AGTTGGGATTTTTTAGATCTGCA.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
................................................AGGTGGGGTTTTTTAGATCAGC........................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
........................................................................................................TACTGGCCTACTAAGTACCAA.................................................... 21 1 1 3.00 3 2 1 0 0 0
................................................AGTTGGGATTTTTTGGATCAGC........................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
................................................AGTGGGGATTTTTTAGATCAG............................................................................................................ 21 1 1 3.00 3 3 0 0 0 0
...................................................TGGGATTGTTTAGATCAGCAG......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................AGTTGGGATTTTTTAGATAAGCA.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
.................................................GTTGAGATTTTTTAGATCAGC........................................................................................................... 21 1 1 3.00 3 1 2 0 0 0
.................................................GTTGGGATTTTTTACATCAGC........................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTTTAGAGCAGCA.......................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTTTAGGTCAGCAG......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
................................................AGTTGAGATTTTTTAGATCAGCA.......................................................................................................... 23 1 1 3.00 3 1 2 0 0 0
...................................................TGGGATTTTTTAGATCATCAG......................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
................................................AGCTGGGATTTTTTAGATCAGCAG......................................................................................................... 24 1 1 3.00 3 3 0 0 0 0
................................................AATTGGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
........................................................................TTATTGCTATACAGCCGTATTAAT................................................................................. 24 0 1 3.00 3 1 2 0 0 0
..................................................TTGGGATCTTTTAGATCAGCAG......................................................................................................... 22 1 1 3.00 3 1 2 0 0 0
.................................................GTTGGGATTTTTTATATCAGC........................................................................................................... 21 1 1 3.00 3 1 2 0 0 0
..................................................TTGGGATTGTTTAGATCAGC........................................................................................................... 20 1 1 3.00 3 2 0 1 0 0
................................................AGTTGGGATTCTTTAGATCAGCAG......................................................................................................... 24 1 1 3.00 3 2 1 0 0 0
...................................................TGGGAATTTTTAGATCAGCAGT........................................................................................................ 22 1 1 3.00 3 1 2 0 0 0
................................................AGTGGGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
...................................................TGGGATTTTTTAGATCAGCACT........................................................................................................ 22 1 1 3.00 3 2 1 0 0 0
...................................................GGGGATTTTTTAGATCAGCAG......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................AGTTGGGATTTTTTATATCAGCT.......................................................................................................... 23 2 1 3.00 3 2 1 0 0 0
................................................AGTTGGGATTTTTTAGACCAGC........................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
................................................AGTTGGGATTTTTTAGATCAGT........................................................................................................... 22 1 1 3.00 3 2 0 1 0 0
................................................AGTTGGGAGTTTTTAGATCAGCA.......................................................................................................... 23 1 1 3.00 3 2 0 1 0 0
..................................................TTGGGATTTTTTAGATGAGCA.......................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
..................................................TTGGCATTTTTTAGATCAGC........................................................................................................... 20 1 1 3.00 3 2 1 0 0 0
..................................................TGGGGGTTTTTTAGATCAGCAG......................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCC.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
.................................................GTTGGGATTTTTTAGATCAGA........................................................................................................... 21 1 1 3.00 3 1 2 0 0 0
..................................................TTGGGATTTTTTAGATCGGCAG......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTTTGGATCAGCA.......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
................................................AGGTGGGATTTTTTATATCAGCA.......................................................................................................... 23 2 1 3.00 3 3 0 0 0 0
.................................................GTTGGGATTTTTTAGATCACC........................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
................................................AGTTGGGATTGTTTAGATCAGC........................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
.........................................................................TATTGCTATACAGCCGTATTA................................................................................... 21 0 1 3.00 3 3 0 0 0 0
................................................AGTTGGGATTTTTTAGATCCGC........................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
................................................AGTTGGGATTTTTTAGCTCAGC........................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................TTGGGTTTTTTTAGATCAGCA.......................................................................................................... 21 1 1 3.00 3 0 3 0 0 0
...................................................TGGGATTTTTTAGATCAGCAC......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................TTGGGATTTTCTAGATCAGCAG......................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGCACC........................................................................................................ 23 2 1 3.00 3 2 1 0 0 0
................................................AGGTGGGAGTTTTTAGATCAGC........................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
................................................AGGTGGGATTTTTTAGATCAGCT.......................................................................................................... 23 2 1 3.00 3 3 0 0 0 0
................................................AGTTGCGATTTTTTAGATCA............................................................................................................. 20 1 1 3.00 3 1 2 0 0 0
................................................AGTTGGGATTTTTTAGAGCAG............................................................................................................ 21 1 1 3.00 3 3 0 0 0 0
..................................................TTGGGATTTTCTAGATCAGCA.......................................................................................................... 21 1 1 3.00 3 2 1 0 0 0
..................................................TGGGGTGTTTTTAGATCAGCAG......................................................................................................... 22 3 2 2.50 5 4 1 0 0 0
................................................AGGTGGGATTTTTTAGATCACC........................................................................................................... 22 2 1 2.00 2 2 0 0 0 0
................................................AGTTGGGATTTTTTAGATTAGC........................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
................................................AGTTGGGAGTTTTTAGATCAG............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTTAGATCAGCTGT........................................................................................................ 23 1 1 2.00 2 1 1 0 0 0
...................................................TGGGGTTTTTTAGATCAGCAG......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
................................................AGTTGGGATTTTTTAGATTAGCA.......................................................................................................... 23 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGATTTTCTAGATCAGC........................................................................................................... 20 1 1 2.00 2 2 0 0 0 0
.................................................GTTGGGATTTTTTAGATGAGC........................................................................................................... 21 1 1 2.00 2 1 1 0 0 0
...................................................TGGGATTTTTTAGATAAGCAG......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
...................................................TGGGATTTTTTAGATCAACAGT........................................................................................................ 22 1 1 2.00 2 1 1 0 0 0
...................................................TGGGATTTTCTAGATCAGCAG......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................CTGGGAATTTTTATATCAGCAGT........................................................................................................ 23 3 1 2.00 2 2 0 0 0 0
..................................................TGGGGATTTTTTAGATCAGCAGT........................................................................................................ 23 1 1 2.00 2 1 1 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGTTT...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0
................................................GGTTGGGATTTTTTAGATCAGC........................................................................................................... 22 1 1 2.00 2 0 1 0 0 1
................................................AGTTGGGATTTTTTACATCAGCA.......................................................................................................... 23 1 1 2.00 2 1 1 0 0 0
................................................AGTTGGGATTTTTTCGATCAGCA.......................................................................................................... 23 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGAGTTTTTAGATCTGCAG......................................................................................................... 22 2 1 2.00 2 2 0 0 0 0
................................................AGTTGGGATTTTTTGGATCAGCA.......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
................................................AGTTGGGATTTCTTAGATCAG............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0
.................................................GCTGGGATTTTTTAGATCAG............................................................................................................ 20 1 1 2.00 2 2 0 0 0 0
................................................AGTCGGGGTTTTTTAGATCAGC........................................................................................................... 22 2 1 2.00 2 1 1 0 0 0
................................................AGTTGGGATTTTTTAGATCACCA.......................................................................................................... 23 1 1 2.00 2 1 1 0 0 0
........................................................................................................TACTGGCCTACTAAGTCCTAA.................................................... 21 1 1 2.00 2 0 2 0 0 0
................................................AGTTGGGTTTTTTTAGATCAG............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0
................................................AGATGGGGTTTTTTAGATCAGCA.......................................................................................................... 23 2 1 2.00 2 2 0 0 0 0
...................................................TGGGATTTTTTAGATCAGCAAT........................................................................................................ 22 1 1 2.00 2 0 2 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCAGTT....................................................................................................... 26 0 1 2.00 2 1 1 0 0 0
...................................................TGGGATTTTTTAGATCAGCAGTA....................................................................................................... 23 1 1 2.00 2 0 1 1 0 0
...................................................TGGGATTTCTTAGATCAGCAGT........................................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTCAGATCAGC........................................................................................................... 20 1 1 2.00 2 2 0 0 0 0
................................................AGGTGGGATTTTTTAGCTCAGCA.......................................................................................................... 23 2 1 2.00 2 2 0 0 0 0
.................................................GTTGGGATTTTTTCGATCAGC........................................................................................................... 21 1 1 2.00 2 1 1 0 0 0
................................................AGTTGGGATTTTTTAGATCAGAAG......................................................................................................... 24 1 1 2.00 2 1 1 0 0 0
.................................................GTTGGGATTTTTTGGATCAGC........................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................TTGGGATTTTTTAGATTAGCA.......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGGTTTTTTAGATCAG............................................................................................................ 19 1 1 2.00 2 1 1 0 0 0
..................................................TTGGGATTTTTTAGATCAGCAGTTT...................................................................................................... 25 1 1 2.00 2 0 2 0 0 0
................................................AGTTGGGATTTTTTAGATCGGCA.......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
...................................................TGGGATTTTTTAGATAATCAG......................................................................................................... 21 2 1 2.00 2 2 0 0 0 0
................................................AGTTGGGATTTTTTAGATCAGCAAA........................................................................................................ 25 2 1 2.00 2 1 1 0 0 0
..................................................TTGGGACTTTTTAGATCAGC........................................................................................................... 20 1 1 2.00 2 2 0 0 0 0
................................................AGTTGGGTCTTTTTAGCTCAGC........................................................................................................... 22 3 1 2.00 2 0 2 0 0 0

Anti-sense strand reads

GATATTCTGCACATTTTGAGTTAACCTTATAAACACACGTGGGTAATATCAACCCTAAAAAATCTAGTCGTCAATAACGATATGTCGGCATAATTATTTAGAAGATGACCGGATGATTCAGGGTTGTATTACTCTCATTTTTGGTGACCGAATTGTTATTCTGATACAATTTTACTC

************************************.(((...((((((.((((((((((..(((.((((.((((((((..((((....)))))))))).....)).)))).)))..))))))))))))))))...)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 V111

male body
......................AACCTTATCAACAGACGTTG....................................................................................................................................... 20 3 4 1.00 4 4 0
....................GTAACCTTATCAACAGACGT......................................................................................................................................... 20 3 10 0.80 8 7 1
....................GTAACCTTATCAACAGACGTG........................................................................................................................................ 21 3 2 0.50 1 1 0
.....................TAACCTTATCAACAGACGTTG....................................................................................................................................... 21 3 3 0.33 1 1 0
.......................ACCTTATCAACAGACGTTG....................................................................................................................................... 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_9:1042477-1042653 - dpe_20 confident CTA-----TAAGAC--GTG----------TAAAA-CTCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA-------------ATAAGACTATGTTA-------------------AAATG-AG
dp5 XR_group6:2746011-2746187 - dps-mir-193 Known_mirbase CCA-----TAAGAC--GTG----------TAAAA-CTCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA-------------ATAAGACTATGTTA-------------------AAATG-AG
droWil2 scf2_1100000004540:1082177-1082324 - dwi_124 confident --------------------------------------------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAAGTCAAAAATTTATTATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGAC------GA---------A--ATGAATTTATGTGAAAAT-------------------A-TT
droVir3 scaffold_13049:17910615-17910763 + dvi-mir-193 Known_mirbase ACA---------TC--GAGGCATAAACTTTAAGC-CTTAATGGTTGTAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGTA-TCGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACC-------------------------------------------------------------------
droMoj3 scaffold_6680:23178995-23179145 + dmo_328 confident ---------------------------------------------------GTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----TTATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGTT--CAAT--TA-ATTTA------------ATTTTAAAAT-----AAATTCAAAACTTTA-AG
droGri2 scaffold_10030:24065-24174 - dgr_57 candidate-rescued ---------------------------------------------------GTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTTTA-TCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCC-------------------------------------------------------------------
droAna3 scaffold_13337:17070814-17070963 - dan_319 confident T-------GAAGTT---------------------CCGAATCGAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTATT---------------GAAA-----------------AT-------------------AAAA
droBip1 scf7180000396641:558558-558721 - AT------GAAGTATCG---------------------AATCCAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGATA----AT----------------TATTG---------AA--------ATT-TAAG
droKik1 scf7180000302694:467018-467175 + CTTAAATATAAGCT--GG---------------------------TTCTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCATATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAATA----AT------------GGTGTGCC--------------------------AA
droFic1 scf7180000453831:395555-395718 + AA------GAAATC--AGT--------------G-CCAGATCGAAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCATATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGCCATGTCA----GT----AG------AA--TGTC----T-------------------T-AA
droEle1 scf7180000491255:2722763-2722904 - TTT--------------------------------CTTGTTAGAAATAC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT-----------------------------------------------------AA
droRho1 scf7180000780059:195367-195518 - AA------GAAGTC--GGT--------------TTCTTGATCGAAATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCATATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATG-----------------------------------------------------A
droBia1 scf7180000302377:1758710-1758899 - CCACAAAAGGAGTC--GGC--------------G-TTTGATCGAGATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGACGTTGG-CGTGAACAGTAAAAACTTAAGA-------------------AAATG--A
droTak1 scf7180000415388:255430-255606 + CCTTAACAGGTGTC--AGG--------------G-CTTAATC-------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCATTA----ATGCA----ATAATAAAAAGTTA-------------------AAGTG-AG
droEug1 scf7180000409472:386325-386493 + CCTTAAAAGAAGTC--GGG--------------A-CTTATTCGAAATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATA----ATG--------------GTGTTA-------------------------AA
dm3 chr3L:21567089-21567253 + dme-mir-193 Known_mirbase --------GAAGTC--GGG--------------T-TTTGATCGCAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCA-TGTGAAG-----------------AT-------------------T-AG
droSim2 3l:21084401-21084565 + dsi-mir-193 Known_mirbase --------GAAGTC--GGG--------------G-TTCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCA-TGTGAAG-----------------AT-------------------T-AA
droSec2 scaffold_11:1487318-1487482 + dse_189 confident --------GAAGTC--GGG--------------G-TTCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCA-TGTGAAG-----------------AT-------------------T-AA
droYak3 v2_chr3L_random_283:15538-15721 + dya_104 confident --------GAAGTC--GGG--------------T-TTTGATCGGAATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTGA-TGTGAAG-----------------ATTACAAAAATATAATAGAAAT-AG
droEre2 scaffold_4784:21221176-21221337 + der_131 confident --------GAAGTC--GGG--------------T-TTTAATCGGAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTT------GAA-----------TATTA-------------------A-----AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTA-----TAAGAC--GTG----------TAAAA-CTCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA-------------ATAAGACTATGTTA-------------------AAATG-AGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2212903.00290303201329151527
..................................................................AGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2211640.001640511074586613
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................2011546.00154681205729477
..................................................................AGTTGGGATTTTTTAGATCAGCA............................................................................................................................................2311386.00138601406377323
..................................................................AGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2411321.00132108076154012
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2211016.00101605042456918
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211902.0090201003285622
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................211726.0072601102894224
..................................................................AGTTGGGATTTTTTAGATCAG..............................................................................................................................................211677.0067700024342311
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................211586.0058607028728111
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231321.003210101471703
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................221190.00190024081850
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................211140.00140014049770
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................201113.00113010039640
..................................................................AGTTGGGATTTTTTAGATCA...............................................................................................................................................201101.0010101026722
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................23175.007500030432
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19155.005504017340
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................20149.004904019260
..................................................................AGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................25143.004300023200
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................22140.004000016240
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................24139.003900014250
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................23138.003800016220
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................20136.003600019161
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................................................23135.003501014200
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................19130.003001015140
..................................................................AGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................24130.003000012180
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................22127.00270207180
..................................................................AGTTGGGATTTTTTAGATCAGCT............................................................................................................................................23124.00240004200
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................18119.00190004150
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22118.00180002160
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................22117.00170007100
..........................................................................................................................TACTGGCCTACTAAGTCCC........................................................................................19116.00160006100
...........................................................................................TATTGCTATACAGCCGTATTAAT...................................................................................................................23115.0015000780
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................23113.0013000760
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................22113.0013000490
.....................................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................................................22111.0011000380
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................21111.00110000101
..................................................................AGTTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................25111.0011000470
...................................................................GTTGGGATTTTTTAGATCA...............................................................................................................................................19111.0011000470
...........................................................................................................................ACTGGCCTACTAAGTCCCAA......................................................................................20110.0010000460
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2317.007010330
....................................................................TTGGGATTTTTTAGATCAGCG............................................................................................................................................2117.007000340
..................................................................AGTTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2417.007000340
..................................................................AGTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2417.007000340
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................2317.007010330
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................2117.007010240
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................2216.006000222
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................2016.006000060
..........................................................................................TTATTGCTATACAGCCGTATT......................................................................................................................2115.005000050
..................................................................AGTTGGGATTTTTTAGATC................................................................................................................................................1915.005110210
...........................................................................................TATTGCTATACAGCCGTATT......................................................................................................................2014.004000130
..........................................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................................................2314.004010030
.............................................................................................................................TGGCCTACTAAGTCCCAACATT..................................................................................2214.004000040
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................2014.004000130
....................................................................TTGGGATTTTTTAGATCAGCC............................................................................................................................................2114.004000220
..................................................................AGTTGGGATTTTTTAGAT.................................................................................................................................................1814.004000220
..................................................................AGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2313.003000030
..................................................................AGTTGGGATTTTTTAGATCAGA.............................................................................................................................................2213.003000300
....................................................................TTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2213.003000030
....................................................................TTGGGATTTTTTAGATCAGCCT...........................................................................................................................................2213.003000030
..................................................................AGTTGGGATTTTTTAGATCAT..............................................................................................................................................2113.003000030
..........................................................................................................................TACTGGCCTACTAAGTCC.........................................................................................1813.003000030
..........................................................................................TTATTGCTATACAGCCGTATTAAT...................................................................................................................2413.003000210
..................................................................AGTTGGGATTTTTTAGATCAGT.............................................................................................................................................2213.003010020
..................................................................AGTTGGGATTTTTTAGATCAGCC............................................................................................................................................2313.003000030
...................................................................GTTGGGATTTTTTAGATCAGA.............................................................................................................................................2113.003000210
...........................................................................................TATTGCTATACAGCCGTATTA.....................................................................................................................2113.003000030
.....................................................................TGGGATTTTTTAGATCAGCAC...........................................................................................................................................2113.003000030
....................................................................TTGGGATTTTTTAGATCAGCACC..........................................................................................................................................2313.003000120
.....................................................................TGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2412.002000020
..................................................................AGTTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2612.002000110
.....................................................................TGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2312.002010100
....................................................................TTGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2512.002000200
..................................................................AGTTGGGATTTTTTAGATCAGCAAA..........................................................................................................................................2512.002000110
dp5
CCA-----TAAGAC--GTG----------TAAAA-CTCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA-------------ATAAGACTATGTTA-------------------AAATG-AGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................AGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2211375.00137512220572075412012
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................2011320.00132031602140107413000
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2211111.00111103915619995208
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................2211054.001054041129570440000
..................................................................AGTTGGGATTTTTTAGATCAGCA............................................................................................................................................231523.0052301203404770000
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211486.0048611203804341000
..................................................................AGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................241466.00466030604543000
..................................................................AGTTGGGATTTTTTAGATCAG..............................................................................................................................................211397.00397090403813000
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................211354.0035407059027530100
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................221259.002590713502133000
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................211164.00164050601520001
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231134.001340102601070000
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................20185.00850210360280000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................22178.007803073020000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................................................23172.007205259060000
..................................................................AGTTGGGATTTTTTAGATCA...............................................................................................................................................20172.007213020651000
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................21170.007006063010000
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................21166.00660230200230000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................23158.005804052020000
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19143.004304000381000
..........................................................................................................................TACTGGCCTACTAAGTCCC........................................................................................19136.003602031030000
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................23132.003201070231000
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................19130.003001050240000
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................24130.0030010100190000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACC....................................................................................23127.002701026000000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACC....................................................................................22126.002600025010000
.........................................................................................................................CTACTGGCCTACTAAGTCCCAAC.....................................................................................23125.002501024000000
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................20120.002001000180010
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................23117.001700000170000
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................20116.001600000140020
..................................................................AGTTGGGATTTTTTAGATCAGCT............................................................................................................................................23114.001400040100000
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................22113.001300000130000
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................18113.001300000130000
..................................................................AGTTGGGATTTTTTAGATC................................................................................................................................................19112.00121304040000
.....................................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................................................22112.001200012000000
..................................................................AGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2519.0090001080000
.............................................................................................................................TGGCCTACTAAGTCCCAACATT..................................................................................2219.0090108000000
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................2118.0080004040000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAC...................................................................................2318.0080008000000
..........................................................................................................................TACTGGCCTACTAAGTCC.........................................................................................1817.0070007000000
...........................................................................................TATTGCTATACAGCCGTATTAAT...................................................................................................................2317.0070000070000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................................................2316.0060006000000
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2216.0060004020000
...................................................................GTTGGGATTTTTTAGATCA...............................................................................................................................................1915.0050000050000
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2215.0050000050000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACT....................................................................................2215.0050005000000
..................................................................AGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2415.0050000050000
....................................................................TTGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2514.0040000040000
..................................................................AGTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2414.0040001030000
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2314.0040011020000
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2214.0040000040000
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................2014.0040000040000
....................................................................TTGGGATTTTTTAGATCAGCC............................................................................................................................................2114.0040003010000
............................................................................................................................CTGGCCTACTAAGTCCCAACA....................................................................................2113.0030102000000
.....................................................................TGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2413.0030100020000
..................................................................AGTTGGGATTTTTTAGATCAGT.............................................................................................................................................2213.0030000030000
..........................................................................................................................TACTGGCCTACTAAGTCCCAAA.....................................................................................2213.0030002010000
...........................................................................................................................ACTGGCCTACTAAGTCCCAA......................................................................................2013.0030200010000
..................................................................AGTTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2513.0030001020000
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................2213.0030100020000
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................2012.0020001010000
..................................................................AGTTGGGATTTTTTAGATCAT..............................................................................................................................................2112.0020000020000
....................................................................TTGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2412.0020000020000
............................................................................................................................CTGGCCTACTAAGTCCCAAC.....................................................................................2012.0020002000000
.............................................................................................................................TGGCCTACTAAGTCCCAAC.....................................................................................1912.0020101000000
.............................................................................................................................TGGCCTACTAAGTCCCAACAT...................................................................................2112.0020002000000
...................................................................GTTGGGATTTTTTAGATCAGCC............................................................................................................................................2212.0020001010000
..................................................................AGTTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2612.0020000020000
....................................................................TTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2212.0020001010000
..................................................................AGTTGGGATTTTTTAGATCAGA.............................................................................................................................................2212.0020001010000
..........................................................................................................................TACTGGCCTACTAAGTCCCAAT.....................................................................................2212.0020001010000
...........................................................................................................................ACTGGCCTACTAAGTCCCA.......................................................................................1912.0020001010000
..........................................................................................TTATTGCTATACAGCCGTATT......................................................................................................................2112.0020000020000
........................................................................................................................TCTACTGGCCTACTAAGTCCCAAC.....................................................................................2412.0020002000000
.....................................................................TGGGATTTTTTAGATCAGCAGG..........................................................................................................................................2212.0020000020000
...................................................................GTTGGGATTTTTTAGATCAGA.............................................................................................................................................2112.0020000020000
......................................................................GGGATTTTTTAGATCAGC.............................................................................................................................................1811.0010100000000
...........................................................................................TATTGCTATACAGCCGTATT......................................................................................................................2011.0010000010000
..................................................................AGTTGGGATTTTTTAGATCAGG.............................................................................................................................................2211.0010000010000
...................................................................................................................AATCTTCTACTGGCCTACTAAGTCCCAAC.....................................................................................2911.0010001000000
.....................................................................TGGGATTTTTTAGATCAGCT............................................................................................................................................2011.0010000010000
..............................................................................................................................GGCCTACTAAGTCCCAAC.....................................................................................1811.0010001000000
droWil2
--------------------------------------------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAAGTCAAAAATTTATTATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGAC------GA---------A--ATGAATTTATGTGAAAAT-------------------A-TTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................20118331.0018331147100743610
..................................................................GGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2215563.00556331310122429
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2212263.00226355111811692
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211819.00819545021271
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................221707.007070281696
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231433.00433180021250
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................221310.00310881000212
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................201288.0028816700265
..................................................................GGTTGGGATTTTTTAGATCAGCA............................................................................................................................................231283.0028359100223
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................211252.002522111247
..................................................................GGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................241193.001938300182
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................211153.001531440009
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................211129.001295400120
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................191116.001165501060
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................23189.00893700151
..................................................................GGTTGGGATTTTTTAGATCAG..............................................................................................................................................21187.00871300074
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22169.00694500024
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................22167.00672901037
..........................................................................................................................TACTGGCCTACTAAGTCCC........................................................................................19161.00614600015
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................19149.0049500044
..................................................................GGTTGGGATTTTTTAGATC................................................................................................................................................19148.00482000028
..................................................................GGTTGGGATTTTTTAGATCA...............................................................................................................................................20146.0046300043
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................18141.00412300018
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................22140.00403000010
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................23134.00341610017
....................................................................TTGGGATTTTTTAGATCAGCC............................................................................................................................................21132.0032240008
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................20122.0022700015
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................20122.00221000012
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................21120.0020140006
..................................................................GGTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................24119.0019100018
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................22119.0019130015
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................22118.0018000117
....................................................................TTGGGATTTTTTAGATCAGCAGG..........................................................................................................................................23118.0018120006
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................23118.0018170001
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................................................23115.001525008
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................20115.0015000015
..................................................................GGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................25112.0012000012
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................24112.0012120000
..........................................................................................................................TACTGGCCTACTAAGTCCCAAT.....................................................................................22111.001120009
..................................................................GGTTGGGATTTTTTAGATCAGA.............................................................................................................................................22111.001120009
....................................................................TTGGGATTTTTTAGATCAGG.............................................................................................................................................2028.0016160000
....................................................................TTGGGATTTTTTAGATCAGCATA..........................................................................................................................................2318.00860002
..................................................................GGTTGGGATTTTTTAGATCAGT.............................................................................................................................................2218.00830005
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................2117.00723002
....................................................................TTGGGATTTTTTAGATCAGCG............................................................................................................................................2116.00660000
....................................................................TTGGGATTTTTTAGATCT...............................................................................................................................................1816.00620004
..........................................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................................................2316.00600006
..........................................................................................................................TACTGGCCTACTAAGTCCCAACC....................................................................................2316.00631002
...........................................................................................................................ACTGGCCTACTAAGTCCCAACT....................................................................................2216.00620004
.............................................................................................................................TGGCCTACTAAGTCCCAACATT..................................................................................2215.00511003
...........................................................................................................................ACTGGCCTACTAAGTCCC........................................................................................1815.00550000
..................................................................GGTTGGGATTTTTTAGATCAGCT............................................................................................................................................2315.00520003
..................................................................GGTTGGGATTTTTTAGATCAGCC............................................................................................................................................2315.00520003
..........................................................................................................................TACTGGCCTACTAAGTCCCAAA.....................................................................................2215.00500005
.....................................................................TGGGATTTTTTAGATCAGCAGG..........................................................................................................................................2214.00400004
....................................................................TTGGGATTTTTTAGATCAGCACC..........................................................................................................................................2313.00320001
..........................................................................................................................TACTGGCCTACTAAGTCC.........................................................................................1813.00320001
..................................................................GGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2313.00330000
....................................................................TTGGGATTTTTTAGATCAGCTC...........................................................................................................................................2213.00330000
..................................................................GGTTGGGATTTTTTAGATCT...............................................................................................................................................2013.00300003
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2313.00300003
......................................................................GGGATTTTTTAGATCAGC.............................................................................................................................................1813.00330000
......................................................................GGGATTTTTTAGATCAGCAGT..........................................................................................................................................2112.00200002
..........................................................................................................................TACTGGCCTACTAAGTCCCAT......................................................................................2112.00201001
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................2212.00200002
....................................................................TTGGGATTTTTTAGATCAGCCT...........................................................................................................................................2212.00220000
..................................................................GGTTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2412.00210001
....................................................................TTGGGATTTTTTAGATCAGCAGTTC........................................................................................................................................2512.00210001
....................................................................TTGGGATTTTTTAGATCAGCATC..........................................................................................................................................2312.00220000
.....................................................................TGGGATTTTTTAGATCAGCAA...........................................................................................................................................2112.00200002
....................................................................TTGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2412.00220000
..................................................................GGTTGGGATTTTTTAGATCAA..............................................................................................................................................2112.00210001
...........................................................................................TATTGCTACAAGTCAAAAATTTATTAT...............................................................................................................2712.00200002
...........................................................................................................................ACTGGCCTACTAAGTCCCAACATT..................................................................................2412.00200002
....................................................................TTGGGATTTTTTAGATCAGCAGTCC........................................................................................................................................2512.00210001
..................................................................GGTTGGGATTTTTTAGATCC...............................................................................................................................................2012.00200002
..................................................................GGTTGGGATTTTTTAGATCAGG.............................................................................................................................................2212.00220000
......................................................................GGGATTTTTTAGATCAGCAG...........................................................................................................................................2012.00200002
...........................................................................................TATTGCTACAAGTCAAAAATTTATT.................................................................................................................2512.00200002
........................................................................GATTTTTTAGATCAGCAG...........................................................................................................................................1812.00210001
.....................................................................TGGGATTTTTTAGATCAG..............................................................................................................................................1812.00200002
..................................................................GGTTGGGATTTTTTAGATCACA.............................................................................................................................................2211.00100001
..................................................................GGTTGGGATTTTTTAGATCAC..............................................................................................................................................2111.00100001
....................................................................TTGGGATTTTTTAGATCAGCCC...........................................................................................................................................2211.00100001
...........................................................................................................................ACTGGCCTACTAAGTCCCA.......................................................................................1911.00100001
.....................................................................TGGGATTTTTTAGATCAGCAGTCC........................................................................................................................................2411.00100001
....................................................................TTGGGATTTTTTAGATCAGCAGTCT........................................................................................................................................2511.00110000
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2311.00100001
..........................................................................................................................TACTGGCCTACTAAGTCCCAAG.....................................................................................2211.00100001
droVir3
ACA---------TC--GAGGCATAAACTTTAAGC-CTTAATGGTTGTAAGCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGTA-TCGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACC-------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................AGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2219659.0096592873721000010020000248146718139920138236000002212000000020000000000000002088001099500000066111400000
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................2112013.002013813625012000100003325143722037590001111000000000000000000000000000600399300000001030000000
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................2011689.001689151148200000000000138232412029140000000000000000000000000000000000100417100000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2211545.00154506570020000000020012912281606511242920001012050010001000000000000000000100442400200000000000000
..................................................................AGTTGGGATTTTTTAGATCAG..............................................................................................................................................2111382.00138203130000000000086673592501481130000130000000000100000000000000000000871500200000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAAT.....................................................................................2211333.00133303673900000000000203109122786720168170000102202000000000000000000000000030067100010000001000000
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................2111102.00110200501220000000238154311122540792030000012020000001000000000000000000000219200001000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTC........................................................................................191616.00616659430000000000021100001200000000000000000000000000000000000006000000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTC........................................................................................181544.00544153610000000000003000101000000000000000000000000000000000000001000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................231505.0050501200010000100076460544271251030000000010100011000000000000000000000158100100000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCA............................................................................................................................................231446.004460632000000000004429152618031600000000010000000000000000000000000200164000000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................221431.00431003001000000005024354425034500000001000000001000000000000000000300184300000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................221407.004070253000000000005039124216046570000010010000000000000000000000000000124000000000000000000
..................................................................AGTTGGGATTTTTTAGATCA...............................................................................................................................................201406.004060109100000000000660012607130000000000000000000000000000000000000245100000000000000000
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211365.003650311000000000003631163925137440000012010000000000000000000000000000107100100000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAA......................................................................................211327.003270331000000000000493821332606048000000100000000000000000000000000010025000000000000000000
..................................................................AGTTGGGATTTTTTAGATC................................................................................................................................................191312.003120292200000000000010000000000000000000000000000000000000000010016000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCA.......................................................................................201310.003102332300000000000322623252305252000000000000000000000000000000000030034000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................241296.00296071000000000005018201212011370000000000000000000000000000000000000146000000000000000000
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................201166.001660300000000000013015300120001012000000000000000000000000000000133100000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231143.0014323110000000000097011440613000000000000000000000000000000000000053200000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTCAAT.....................................................................................211107.00107122110000000000011722860161400000000000000000000000000000000000007000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCT............................................................................................................................................231102.00102052000000000000141120005000000000000000000000000000000000000036000000000000000000
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................20191.0091001000000000001713019501218000000000000000000000000000000000000015000000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTCAATA....................................................................................22189.008906700000000000136141280171400000000000000000000000000000000000001000000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTCAATT....................................................................................22153.0053082000000000007211520111100000000100000000000000000000000000000000200000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTCAATAT...................................................................................23148.0048121000000000007101034011800000000000000000000000000000000000000000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAATT....................................................................................23144.004401910000000000030221204800000000000000000000000000000000001001000000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTCA.......................................................................................19135.00350770000000000032103202100000000000000000000000000000000003004000000000000000000
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19130.003008100000000000100001014000000000000000000000000000000000000014000000000000000000
...................................................................GTTGGGATTTTTTAGATCA...............................................................................................................................................19126.002603100000000000000011001000000000000000000000000000000000000019000000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTCAA......................................................................................20125.00250220000000000033005303400000000000000000000000000000000000000000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGT.............................................................................................................................................22125.0025010000000000000110010000000000000000000000000000000000000000012000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22121.00210200000000000010112201300000000000000000000000000000000000008000000000000000000
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................19120.00200010000000000010002303000000000000000000000000000000000001009000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................21120.002001800000000000000000100000000000000000000000000000000000000001000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAAC.....................................................................................22118.001801610000000000010000000000000000000000000000000000000000000000000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGG.............................................................................................................................................22116.001601600000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GTTGGGATTTTTTAGATC................................................................................................................................................18115.001501500000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGGCCTACTAAGTCTCAATATT..................................................................................22114.00140620000000000001001000200000000000000000000000000000000000002000000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................23114.00140000000000000011001002400000000000000000000000000000000000005000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................23113.00130100000000000021001001000000000000000000000000000000000000007000000000000000000
..................................................................AGTTGGGATTTTTTAGAT.................................................................................................................................................18113.00130700000000000001000000000000000000000000000000000000000000005000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................23112.00120100000000000001001200101000010000000000000000000000000000004000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................24112.00120300000000000011010101100000000000000000000000000000000000003000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................24111.00110300000000000040000001200000000000000000000000000000000000001000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................22110.00100010000000000011002101100000000000000000000000000000000000002000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGA.............................................................................................................................................22110.00100300000000000000000100000000000000000000000000000000000000006000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAT..............................................................................................................................................2119.0090000000000000000000100200000000000000000000000000000000000006000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCT............................................................................................................................................2219.0090600000000000000001000000000000000000000000000000000000000000002000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2419.0090000000000000020000200000000000000000000000000000000000000005000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2218.0080200000000000000000001000000000000000000000000000000000000005000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2517.0070100000000000000000201000000000000000000000000000000000000003000000000000000000
..................................................................AGTTGGGATTTTTTAGATT................................................................................................................................................1917.0070100000000000000000000000000000000000000000000000000000000006000000000000000000
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................1816.0060200000000000020001000100000000000000000000000000000000000000000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2316.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAAA.....................................................................................2216.0060210000000000010000101000000000000000000000000000000000000000000000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAT...........................................................................................................................................2115.0050000000000000010000001100000000000000000000000000000000000002000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGG.............................................................................................................................................2115.0050500000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCT.......................................................................................2015.0050400000000000000000100000000000000000000000000000000000000000000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2315.0050000000000000001001000000000000000000000000000000000000000003000000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2215.0050000000000000011000000000000000000000000000000000000000000003000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2414.0040000000000000000000101100000000000000000000000000000000000001000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCT.........................................................................................1814.0040200000000000001000001000000000000000000000000000000000000000000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAC..............................................................................................................................................2114.0040000000000000000000000100000000000000000000000000000000000003000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCC............................................................................................................................................2314.0040200000000000000000000000000000000000000000000000000000000002000000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2214.0040000000000000010001000000000000000000000000000000000000000002000000000000000000
..................................................................AGTTGGGATTTTTTAGATCG...............................................................................................................................................2013.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................AGTTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2413.0030000000000000000000001000000000000000000000000000000000000002000000000000000000
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................2013.0030100000000000000000000000000000000000000000000000000000000002000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2213.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGG..........................................................................................................................................2313.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGT.............................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000003000000000000000000
....................................................................TTGGGATTTTTTAGATCAGG.............................................................................................................................................2013.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGTTGGGATTTTTTAGATCT...............................................................................................................................................2013.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCG............................................................................................................................................2113.0030200000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................GATTTTTTAGATCAGCAG...........................................................................................................................................1812.0020000000000000000000001100000000000000000000000000000000000000000000000000000000
.........................................................................................................................CTACTGGCCTACTAAGTCTCAAT.....................................................................................2312.0020000000000000011000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCTCAATATT..................................................................................2412.0020100000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAA...........................................................................................................................................2112.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAATAA...................................................................................2412.0020000000000000010000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAAG.....................................................................................2212.0020100000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCAT......................................................................................2112.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
............................................................................................................................CTGGCCTACTAAGTCTCAAT.....................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GTTGGGATTTTTTAGATCAGCC............................................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................CTGGCCTACTAAGTCTCAA......................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2312.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCTCC.......................................................................................2012.0020100000000000000000001000000000000000000000000000000000000000000000000000000000
droMoj3
---------------------------------------------------GTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----TTATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAGTT--CAAT--TA-ATTTA------------ATTTTAAAAT-----AAATTCAAAACTTTA-AGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................AGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2212092.0020921107691282228
..................................................................AGTTGGGATTTTTTAGATCAG..............................................................................................................................................2111484.00148420597867018
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................221561.005616120933609
..................................................................AGTTGGGATTTTTTAGATCA...............................................................................................................................................201401.004013015324203
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................201373.003731014123001
..................................................................AGTTGGGATTTTTTAGATCAGCA............................................................................................................................................231178.00178104612902
..................................................................AGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................241152.0015210678211
..................................................................AGTTGGGATTTTTTAGATCAGCT............................................................................................................................................231147.0014700569001
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................221140.0014000498605
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211110.0011000367301
..........................................................................................................................TACTGGCCTACTAAGTCTCAAT.....................................................................................22178.0078120283800
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................23167.006700273703
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................21162.006200253601
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................23147.004700242201
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................21143.004320172301
..........................................................................................................................TACTGGCCTACTAAGTCTCA.......................................................................................20136.003610191600
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................22129.002900111800
..................................................................AGTTGGGATTTTTTAGATCAGT.............................................................................................................................................22126.002600101600
..................................................................AGTTGGGATTTTTTAGATC................................................................................................................................................19120.00200051500
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19120.00200061400
..........................................................................................................................TACTGGCCTACTAAGTCTCAA......................................................................................21120.0020209900
...........................................................................................................................ACTGGCCTACTAAGTCTCAATAT...................................................................................23120.00203061100
...........................................................................................................................ACTGGCCTACTAAGTCTCAATA....................................................................................22118.0018506700
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................20116.0016008800
..................................................................AGTTGGGATTTTTTAGAT.................................................................................................................................................18115.00150051000
..................................................................AGTTGGGATTTTTTAGATCAT..............................................................................................................................................21110.0010007300
..................................................................AGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................24110.0010006400
...........................................................................................................................ACTGGCCTACTAAGTCTCAAT.....................................................................................21110.0010105400
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2219.009005400
...........................................................................................................................ACTGGCCTACTAAGTCTCAATT....................................................................................2218.008004400
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2318.008004400
..................................................................AGTTGGGATTTTTTAGATT................................................................................................................................................1917.007005200
..................................................................AGTTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2416.006002400
..................................................................AGTTGGGATTTTTTAGATCAGA.............................................................................................................................................2215.005002300
.............................................................................................................................TGGCCTACTAAGTCTCAATATT..................................................................................2214.004002110
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2414.004001300
...........................................................................................................................ACTGGCCTACTAAGTCTCAA......................................................................................2014.004001300
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................1814.004000400
...................................................................GTTGGGATTTTTTAGATCA...............................................................................................................................................1913.003001200
.............................................................................................................................TGGCCTACTAAGTCTCAATAT...................................................................................2113.003002100
..................................................................AGTTGGGATTTTTTAGATCT...............................................................................................................................................2013.003001200
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2213.003002100
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................1912.002001100
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2212.002000200
..................................................................AGTTGGGATTTTTTAGATCAGTTT...........................................................................................................................................2412.002000200
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2312.002001100
..................................................................AGTTGGGATTTTTTAGATCAGCC............................................................................................................................................2312.002000200
...........................................................................................................................ACTGGCCTACTAAGTCTCA.......................................................................................1912.002001100
.................................................................................................................................CTACTAAGTCTCAATA....................................................................................1611.001000100
..................................................................AGTTGGGATTTTTTAGAA.................................................................................................................................................1811.001001000
...........................................................................................................................ACTGGCCTACTAAGTCTC........................................................................................1811.001001000
.................................................................TAGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2311.001000100
..................................................................AGTTGGGATTTTTTAGATCATA.............................................................................................................................................2211.001000100
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................2111.001001000
..................................................................AGTTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2411.001001000
..........................................................................................................................TACTGGCCTACTAAGTCTCAT......................................................................................2111.001001000
.................................................................TAGTTGGGATTTTTTAGATCAG..............................................................................................................................................2211.001001000
..................................................................AGTTGGGATTTTTTAGATCAGAT............................................................................................................................................2311.001000100
...................................................................GTTGGGATTTTTTAGATCAGCC............................................................................................................................................2211.001001000
droGri2
---------------------------------------------------GTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGACCTTTA-TCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCC-------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..........................................................................................................................TACTGGCCTACTAAGTCCCAAT.....................................................................................2219.00990
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................2112.00211
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................2011.00110
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2211.00110
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2311.00110
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2311.00101
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................2211.00101
droAna3
T-------GAAGTT---------------------CCGAATCGAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTATT---------------GAAA-----------------AT-------------------AAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................GGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2211950.00195020063111874
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................2011933.001933000265221646
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2211347.001347141064056636
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................221738.0073841020549479
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................211736.00736160033216372
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................211474.00474200435424
..................................................................GGTTGGGATTTTTTAGATCAGCA............................................................................................................................................231306.00306200455254
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211295.002952001727114
..................................................................GGTTGGGATTTTTTAGATCAG..............................................................................................................................................211285.00285400518222
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................221269.0026911420205128
..................................................................GGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................241229.00229000334192
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................201213.002133700130163
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................201156.00156000165135
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231136.00136210501073
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................211128.00128220016288
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................191115.0011500017098
..................................................................GGTTGGGATTTTTTAGATCA...............................................................................................................................................201106.0010610015486
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................22165.006537007021
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19152.005210023127
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................22147.004710013033
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22141.004100017024
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................20141.004120015123
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................23140.00400007132
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................23126.00260007019
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................22126.00260001223
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................22125.00250008215
..................................................................GGTTGGGATTTTTTAGATC................................................................................................................................................19124.00240001023
..................................................................GGTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................24123.00230000023
...................................................................GTTGGGATTTTTTAGATCA...............................................................................................................................................19121.00210002019
..................................................................GGTTGGGATTTTTTAGATCAGA.............................................................................................................................................22119.00190000019
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................23118.00180007011
...................................................................GTTGGGATTTTTTAGATC................................................................................................................................................18116.00160000016
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................................................23115.0015300615
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................21114.00141200200
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................23113.0013600007
...................................................................GTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................23112.00120001011
.....................................................................TGGGATTTTTTAGATCAGCAT...........................................................................................................................................21111.0011000308
..................................................................GGTTGGGATTTTTTAGATCAGT.............................................................................................................................................22110.0010000118
...........................................................................................................................ACTGGCCTACTAAGTCCCAA......................................................................................2019.009500103
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................1819.009000702
..................................................................GGTTGGGATTTTTTAGAT.................................................................................................................................................1818.008000008
...................................................................GTTGGGATTTTTTAGATCAGA.............................................................................................................................................2118.008000107
......................................................................GGGATTTTTTAGATCAGCAG...........................................................................................................................................2017.007600100
..........................................................................................................................TACTGGCCTACTAAGTCCC........................................................................................1917.007200005
..................................................................GGTTGGGATTTTTTAGATCAT..............................................................................................................................................2117.007000115
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................2016.006000204
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2316.006000105
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................2016.006000105
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2416.006000303
....................................................................TTGGGATTTTTTAGATCAGCC............................................................................................................................................2115.005000401
..................................................................GGTTGGGATTTTTTAGATCAGCT............................................................................................................................................2315.005000302
...........................................................................................................................ACTGGCCTACTAAGTCCCAACT....................................................................................2215.005200003
.............................................................................................................................TGGCCTACTAAGTCCCAACAT...................................................................................2114.004200101
.............................................................................................................................TGGCCTACTAAGTCCCAACATT..................................................................................2214.004300100
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................2114.004000202
....................................................................TTGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2513.003000102
..................................................................GGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2413.003000012
..................................................................GGTTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2413.003000003
.....................................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2213.003000102
.....................................................................TGGGATTTTTTAGATCAGCAA...........................................................................................................................................2113.003000102
....................................................................TTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2213.003000201
..................................................................GGTTGGGATTTTTTAGATCAA..............................................................................................................................................2113.003000003
.....................................................................TGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2312.002000200
....................................................................TTGGGATTTTTTAGATCAGCATA..........................................................................................................................................2312.002000200
..........................................................................................................................TACTGGCCTACTAAGTCCCAAT.....................................................................................2212.002200000
.............................................................................................................................TGGCCTACTAAGTCCCAACA....................................................................................2012.002200000
..........................................................................................................................TACTGGCCTACTAAGTCCCT.......................................................................................2012.002000002
.....................................................................TGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2412.002000101
......................................................................GGGATTTTTTAGATCAGC.............................................................................................................................................1812.002000101
....................................................................TTGGGATTTTTTAGATCAGCTA...........................................................................................................................................2212.002000101
....................................................................TTGGGATTTTTTAGATCAGG.............................................................................................................................................2012.002000101
..........................................................................................................................TACTGGCCTACTAAGTCCCAT......................................................................................2112.002000101
..........................................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................................................2312.002100001
.....................................................................TGGGATTTTTTAGATCAGCAGTC.........................................................................................................................................2312.002000110
...................................................................GTTGGGATTTTTTAGATCT...............................................................................................................................................1912.002000002
...........................................................................................TATTGCTATATTGCCATATTC.....................................................................................................................2112.002100001
..........................................................................................................................TACTGGCCTACTAAGTCCCAAA.....................................................................................2212.002000002
.....................................................................TGGGATTTTTTAGATCAGCAC...........................................................................................................................................2112.002000101
............................................................................................................................CTGGCCTACTAAGTCCCAACA....................................................................................2112.002200000
..................................................................GGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2512.002000101
...........................................................................................................................ACTGGCCTACTAAGTCCCA.......................................................................................1912.002100001
.....................................................................TGGGATTTTTTAGATCAG..............................................................................................................................................1812.002000011
....................................................................TTGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2412.002000002
...................................................................GTTGGGATTTTTTAGATCAT..............................................................................................................................................2012.002000002
..........................................................................................TTATTGCTATATTGCCATATT......................................................................................................................2112.002000002
....................................................................TTGGGATTTTTTAGATCAGCG............................................................................................................................................2112.002000200
..................................................................GGTTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2512.002000002
..................................................................GGTTGGGATTTTTTAGATCT...............................................................................................................................................2012.002000002
.....................................................................TGGGATTTTTTAGATCAGCAGTTC........................................................................................................................................2411.001000001
...........................................................................................................................ACTGGCCTACTAAGTCCCAACATT..................................................................................2411.001000001
..................................................................GGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2311.001000001
droBip1
AT------GAAGTATCG---------------------AATCCAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCATATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGATA----AT----------------TATTG---------AA--------ATT-TAAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTTAAATATAAGCT--GG---------------------------TTCTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCATATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAATA----AT------------GGTGTGCC--------------------------AASizeHit CountTotal NormTotal
No Reads
droFic1
AA------GAAATC--AGT--------------G-CCAGATCGAAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCATATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGCCATGTCA----GT----AG------AA--TGTC----T-------------------T-AASizeHit CountTotal NormTotal
No Reads
droEle1
TTT--------------------------------CTTGTTAGAAATAC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGAT-----------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droRho1
AA------GAAGTC--GGT--------------TTCTTGATCGAAATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCATATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATG-----------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
CCACAAAAGGAGTC--GGC--------------G-TTTGATCGAGATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGACGTTGG-CGTGAACAGTAAAAACTTAAGA-------------------AAATG--ASizeHit CountTotal NormTotal
No Reads
droTak1
CCTTAACAGGTGTC--AGG--------------G-CTTAATC-------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCATTA----ATGCA----ATAATAAAAAGTTA-------------------AAGTG-AGSizeHit CountTotal NormTotal
No Reads
droEug1
CCTTAAAAGAAGTC--GGG--------------A-CTTATTCGAAATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATA----ATG--------------GTGTTA-------------------------AASizeHit CountTotal NormTotal
No Reads
dm3
--------GAAGTC--GGG--------------T-TTTGATCGCAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCA-TGTGAAG-----------------AT-------------------T-AGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
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..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................22110513.0010513000022200000000032828000003000492014722615528000000000000000000000028281000000000000000002423454111110112706267052146720182051747522112463181460511130134220912003554233000001000000000000000000000000000000106990868053361671592422147695570000010200000000005000000000000000000000101100300010000000190000119030000059000000000000000000000000000029142379103710000010143302010010110000016700000000000
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................2118259.00825900001000000000200200000000007820419122001100010000011010000035558000000000000000001000800000100002000490000001050003210000000118021122011134612091614617000002000002002400000000000000000000045362604621014025192489546313652600000329200000000000000000000000000401000061204100000002004101300013950140000055100110101302211060337161002229435126230700372120151153043490313231110000010043000100300100
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................2117948.007948000019031000000020010000010001511653662612100000000000000000000007341300000000000000000262229300101060104860011298820052630410191247610007022701011504333742000000000000000010000000000000000000122167010532168328569392114791226000002270000000000000000000000000000000010000100000000000011000000240300000650000000000000000100000000000321316101003100000030151000100000000000012900000100000
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..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................2016964.0069640000990010000002100800000000048372741844100000000000000000000007224200000000000000000101028500240050002781162073000324762008146330200314214011112610152741570000000000000000000000000000000000001181320911461212143929191403228800000448000000000000000000000000000000000000000000000000002900002410900000310000010000001000000000000000351419109001000000110025000000000001000008700000000000
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droSim2
--------GAAGTC--GGG--------------G-TTCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCA-TGTGAAG-----------------AT-------------------T-AASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................20111546.00115461104515270445302000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................2216117.006117110001133587300000000000
..................................................................GGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2214547.00454742916601423000000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................2011870.001870800129183200000000000
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2211830.00183056620321122920241000000
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....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................2111426.00142638200114102900000000000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................2211168.001168500034112900000000000
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................211888.0088880002585500000000000
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................181771.00771270011872500000000000
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..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................211619.0061960001859500000000000
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231494.00494332301215500010000000
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................191427.0042778100834000000000000
...........................................................................................................................ACTGGCCTACTAAGTCCCA.......................................................................................191419.004191000641200000000000
..........................................................................................................................TACTGGCCTACTAAGTCC.........................................................................................181375.0037510000735800000000000
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..................................................................GGTTGGGATTTTTTAGAT.................................................................................................................................................181253.002534000324600000000000
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.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................23176.0076000017500000000000
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................19167.0067200016400000000000
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22158.0058580000000000000000
.............................................................................................................................TGGCCTACTAAGTCCCAACA....................................................................................20152.0052000005200000000000
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................23142.0042420000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGG..........................................................................................................................................23126.0026260000000000000000
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................20121.0021210000000000000000
....................................................................TTGGGATTTTTTAGATCAGG.............................................................................................................................................20119.0019190000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACATA..................................................................................24119.0019000001900000000000
....................................................................TTGGGATTTTTTAGATCAGCTT...........................................................................................................................................22116.0016160000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACAT...................................................................................24113.0013000001300000000000
....................................................................TTGGGATTTTTTAGATCAGCC............................................................................................................................................21112.0012120000000000000000
..................................................................GGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................25112.0012200001000000000000
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................22110.0010100000000000000000
.............................................................................................................................TGGCCTACTAAGTCCCAACATA..................................................................................2219.00900000900000000000
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2219.00990000000000000000
.............................................................................................................................TGGCCTACTAAGTCCCAA......................................................................................1819.00900000900000000000
.............................................................................................................................TGGCCTACTAAGTCCCAAC.....................................................................................1919.00900000900000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................2318.00880000000000000000
....................................................................TTGGGATTTTTTAGATCAGCG............................................................................................................................................2118.00880000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2517.00750000000000002000
..................................................................GGTTGGGATTTTTTAGATCAGG.............................................................................................................................................2216.00660000000000000000
......................................................................GGGATTTTTTAGATCAGC.............................................................................................................................................1816.00660000000000000000
...................................................................GTTGGGATTTTTTAGATCA...............................................................................................................................................1915.00500000500000000000
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2315.00510000400000000000
..............................................................................................................................GGCCTACTAAGTCCCAAC.....................................................................................1815.00500000500000000000
.................................................................TGGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2315.00540001000000000000
...................................................................GTTGGGATTTTTTAGATC................................................................................................................................................1814.00400000400000000000
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................2214.00420000200000000000
......................................................................GGGATTTTTTAGATCAGCAG...........................................................................................................................................2014.00400000400000000000
.....................................................................TGGGATTTTTTAGATCAGCAGTTAT.......................................................................................................................................2514.00400000400000000000
....................................................................TTGGGATTTTTTAGATCAGCAGAA.........................................................................................................................................2413.00330000000000000000
..................................................................GGTTGGGATTTTTTAGATCAGA.............................................................................................................................................2213.00330000000000000000
............................................................................................................................CTGGCCTACTAAGTCCCAAC.....................................................................................2013.00300000300000000000
....................................................................TTGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2413.00330000000000000000
..................................................................GGTTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2513.00330000000000000000
........................................................................GATTTTTTAGATCAGCAG...........................................................................................................................................1812.00210000100000000000
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................2012.00220000000000000000
................................................................ATGGTTGGGATTTTTTAGATC................................................................................................................................................2112.00220000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAAA..........................................................................................................................................2312.00210000000001000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACATA..................................................................................2512.00200000200000000000
..............................................................................................................................GGCCTACTAAGTCCCAACAT...................................................................................2012.00200000200000000000
....................................................................TTGGGATTTTTTAGATCAC..............................................................................................................................................1912.00220000000000000000
.........................................................................ATTTTTTAGATCAGCAGT..........................................................................................................................................1812.00220000000000000000
..................................................................GGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2312.00220000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGTTA........................................................................................................................................2512.00200000200000000000
..................................................................GGTTGGGATTTTTTAGATCAGT.............................................................................................................................................2212.00220000000000000000
..............................................................................................................................GGCCTACTAAGTCCCAACA....................................................................................1912.00200000200000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCT.......................................................................................2012.00220000000000000000
....................................................................TTGGGATTTTTTAGATCAGCATA..........................................................................................................................................2312.00220000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAGTTA........................................................................................................................................2412.00200000200000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACATAA.................................................................................2612.00200000200000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACC....................................................................................2312.00220000000000000000
.........................................................................................................................CTACTGGCCTACTAAGTCCCAAC.....................................................................................2312.00200000200000000000
....................................................................TTGGGATTTTTTAGATCT...............................................................................................................................................1812.00220000000000000000
...............................................................TATGGTTGGGATTTTTTAGATC................................................................................................................................................2212.00220000000000000000
......................................................................GGGATTTTTTAGATCAGCAGT..........................................................................................................................................2112.00200000200000000000
....................................................................TTGGGATTTTTTAGATCAGCAGTC.........................................................................................................................................2412.00220000000000000000
..................................................................GGTTGGGATTTTTTAGATCT...............................................................................................................................................2011.00110000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGACT........................................................................................................................................2511.00110000000000000000
..................................................................GGTTGGGATTTTTTAGATCAGCAGG..........................................................................................................................................2511.00110000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAGAC.........................................................................................................................................2411.00110000000000000000
............................................................................................................................CTGGCCTACTAAGTCCCAA......................................................................................1911.00100000100000000000
.................................................................TGGTTGGGATTTTTTAGATCAG..............................................................................................................................................2211.00100000100000000000
..................................................................GGTTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2611.00100000100000000000
....................................................................TTGGGATTTTTTAGATCAGCACG..........................................................................................................................................2311.00110000000000000000
............................................................................................................................CTGGCCTACTAAGTCCCAACAT...................................................................................2211.00100000100000000000
.............................................................................................................................TGGCCTACTAAGTCCCAACATAA.................................................................................2311.00100000100000000000
..................................................................GGTTGGGATTTTTTAGATCAGCC............................................................................................................................................2311.00110000000000000000
....................................................................TTGGGATTTTTTAGATCAGCAAAA.........................................................................................................................................2411.00110000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACATAA.................................................................................2511.00100000100000000000
..................................................................GGTTGGGATTTTTTAGATCAGCAGAC.........................................................................................................................................2611.00110000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACGC...................................................................................2411.00110000000000000000
.....................................................................TGGGATTTTTTAGATCAGCAGTTATT......................................................................................................................................2611.00100000100000000000
...................................................................GTTGGGATTTTTTAGATCAGA.............................................................................................................................................2111.00110000000000000000
..........................................................................................................................TACTGGCCTACTAAGTCCT........................................................................................1911.00110000000000000000
...........................................................................................................................ACTGGCCTACTAAGTCCCAATT....................................................................................2211.00110000000000000000
..................................................................GGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2411.00110000000000000000
....................................................................TTGGGATTTTTTAGATCTT..............................................................................................................................................1980.13110000000000000000
droSec2
--------GAAGTC--GGG--------------G-TTCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTCA-TGTGAAG-----------------AT-------------------T-AASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................2011541.0015411121537
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................221924.00924725910
..................................................................GGTTGGGATTTTTTAGATCAGC.............................................................................................................................................221538.00538000538
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................221393.00393001392
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211275.00275101273
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231228.00228001227
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................231189.00189010188
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................211186.00186010185
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................201147.00147400143
..................................................................GGTTGGGATTTTTTAGATCAG..............................................................................................................................................21174.007401073
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................21172.007250067
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................22171.007160065
..................................................................GGTTGGGATTTTTTAGATCAGCA............................................................................................................................................23161.006100061
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................21149.004900049
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................22146.004600046
..................................................................GGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................24142.004210140
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19141.004100041
..................................................................GGTTGGGATTTTTTAGATCA...............................................................................................................................................20133.003300033
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22131.003101030
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................19130.003000030
..........................................................................................................................TACTGGCCTACTAAGTCCC........................................................................................19128.002800028
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................18117.001700017
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................23115.001500015
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................22111.00112009
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................2019.0090108
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................2118.0080008
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................2018.0080008
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2318.0080008
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2218.0080008
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2418.0080008
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................2017.0070007
..................................................................GGTTGGGATTTTTTAGATCAGA.............................................................................................................................................2216.0060006
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................2116.0060006
..................................................................GGTTGGGATTTTTTAGATC................................................................................................................................................1916.0060006
..................................................................GGTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2416.0060006
..........................................................................................................................TACTGGCCTACTAAGTCCCAAT.....................................................................................2216.0060006
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................2314.0040004
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................2014.0040004
.....................................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2214.0040004
..........................................................................................................................TACTGGCCTACTAAGTCCCAAA.....................................................................................2214.0042002
...........................................................................................................................ACTGGCCTACTAAGTCCCA.......................................................................................1913.0031002
.....................................................................TGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2413.0030003
...........................................................................................................................ACTGGCCTACTAAGTCCCAA......................................................................................2013.0030003
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................................................2313.0030003
..........................................................................................................................TACTGGCCTACTAAGTCCCAT......................................................................................2113.0030003
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2213.0030003
..........................................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................................................2313.0030003
..................................................................GGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2413.0030003
..................................................................GGTTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2512.0020002
.....................................................................TGGGATTTTTTAGATCAGCAT...........................................................................................................................................2112.0020002
....................................................................TTGGGATTTTTTAGATCAGCATA..........................................................................................................................................2312.0020002
...................................................................GTTGGGATTTTTTAGATC................................................................................................................................................1812.0020002
..................................................................GGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2512.0020002
.............................................................................................................................TGGCCTACTAAGTCCCAACA....................................................................................2012.0020002
..........................................................................................................................TACTGGCCTACTAAGTCCCTT......................................................................................2112.0020011
..................................................................GGTTGGGATTTTTTAGATCAGT.............................................................................................................................................2212.0020002
....................................................................TTGGGATTTTTTAGATCAGCAGG..........................................................................................................................................2312.0020002
....................................................................TTGGGATTTTTTAGATCAGCG............................................................................................................................................2112.0020002
...........................................................................................TATTGCTATATAGCCATATTTATAAAT...............................................................................................................2711.0010001
..........................................................................................................................TACTGGCCTACTAAGTCCCT.......................................................................................2011.0010001
....................................................................TTGGGATTTTTTAGATCAGCAGTCT........................................................................................................................................2511.0010001
....................................................................TTGGGATTTTTTAGATCAGCAAAA.........................................................................................................................................2411.0010001
..........................................................................................................................TACTGGCCTACTAAGTCCCAACG....................................................................................2311.0010001
....................................................................TTGGGATTTTTTAGATCAGCAGTTTG.......................................................................................................................................2611.0010001
..................................................................GGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2311.0010001
....................................................................TTGGGATTTTTTAGATCAGCAGAA.........................................................................................................................................2411.0010001
....................................................................TTGGGATTTTTTAGATCAGCAGAAC........................................................................................................................................2511.0010001
..........................................................................................TTATTGCTATATAGCCATATT......................................................................................................................2111.0010001
..................................................................GGTTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2511.0010001
....................................................................TTGGGATTTTTTAGATCAGCAAA..........................................................................................................................................2311.0010001
..................................................................GGTTGGGATTTTTTAGATCAGCT............................................................................................................................................2311.0010001
..................................................................GGTTGGGATTTTTTAGATCAGCGA...........................................................................................................................................2411.0010001
..................................................................GGTTGGGATTTTTTAGATCAGG.............................................................................................................................................2211.0010001
.....................................................................TGGGATTTTTTAGATCAGCAA...........................................................................................................................................2111.0010001
.....................................................................TGGGATTTTTTAGATCAGCAC...........................................................................................................................................2111.0010001
.....................................................................................................................................TAAGTCCCAACATAATGAGAGT..........................................................................2211.0010001
..........................................................................................................................TACTGGCCTACTAAGTCCCATT.....................................................................................2221.0020002
...........................................................................................................................ACTGGCCTACTAAGTCCTT.......................................................................................1911.0010001
..................................................................GGTTGGGATTTTTTAGATCAGTT............................................................................................................................................2311.0010001
...........................................................................................................................ACTGGCCTACTAAGTCCCAACT....................................................................................2211.0010001
.......................................................................GGATTTTTTAGATCAGCA............................................................................................................................................1811.0010001
.....................................................................TGGGATTTTTTAGATCAGCAGTG.........................................................................................................................................2311.0010001
....................................................................TTGGGATTTTTTAGATCAGG.............................................................................................................................................2011.0010001
..................................................................GGTTGGGATTTTTTAGATCAGCAGAA.........................................................................................................................................2611.0010001
..........................................................................................................................TACTGGCCTACTAAGTCC.........................................................................................1811.0010001
....................................................................TTGGGATTTTTTAGATCAGCAGTCC........................................................................................................................................2511.0010001
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................2211.0011000
....................................................................TTGGGATTTTTTAGATCAGCAGTAT........................................................................................................................................2511.0010001
.....................................................................TGGGATTTTTTAGATCAGCAGAA.........................................................................................................................................2311.0010001
..........................................................................................................................TACTGGCCTACTAAGTCCCC.......................................................................................2011.0010001
....................................................................TTGGGATTTTTTAGATCAGTT............................................................................................................................................2120.5010001
...........................................................................................................................ACTGGCCTACTAAGTCCCATT.....................................................................................2120.5010001
....................................................................TTGGGATTTTTTAGATCACAG............................................................................................................................................2140.2510001
droYak3
--------GAAGTC--GGG--------------T-TTTGATCGGAATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTTGA-TGTGAAG-----------------ATTACAAAAATATAATAGAAAT-AGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................2022212.004424366420021454220000
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2221449.5028992800008091794160000
..................................................................GGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2221230.50246122760106312100000
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................222556.001112020032577780000
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................212358.5071718920013439200000
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................212294.00588130019438730000
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................212266.505333150006914540000
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................232183.003661410006615810000
..................................................................GGTTGGGATTTTTTAGATCAGCA............................................................................................................................................232104.50209413004811520000
..................................................................GGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................24269.0013813000358910000
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................22264.5012962720243400000
..................................................................GGTTGGGATTTTTTAGATCAG..............................................................................................................................................21244.50896000305210000
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................21239.50792600244700000
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19228.50571400083500000
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................23228.005611000133200000
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................20226.50537400172500000
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................21225.0050430001600000
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22224.00483000103500000
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................20216.50330000112200000
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................24214.00281100061100000
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................23213.5027000052200000
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2229.501930007900000
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................1829.001850004900000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................................................2329.0018310041000000
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2329.0018140002200000
....................................................................TTGGGATTTTTTAGATCAGCAGG..........................................................................................................................................2328.5017170000000000
..................................................................GGTTGGGATTTTTTAGATC................................................................................................................................................1927.5015150000000000
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................1927.0014000041000000
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2227.001450000900000
..................................................................GGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2527.001410006700000
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2326.501321003700000
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................2226.501300005710000
..................................................................GGTTGGGATTTTTTAGATCA...............................................................................................................................................2026.001210005510000
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................2226.001250002500000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................2225.501124003200000
....................................................................TTGGGATTTTTTAGATCAGCG............................................................................................................................................2125.001070001200000
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................2024.50900003510000
.....................................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2224.50900002700000
....................................................................TTGGGATTTTTTAGATCAGG.............................................................................................................................................2024.50990000000000
.....................................................................TGGGATTTTTTAGATCAGCAT...........................................................................................................................................2123.50700003400000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................2323.50731002100000
....................................................................TTGGGATTTTTTAGATCAGCC............................................................................................................................................2123.00630000300000
..........................................................................................................................TACTGGCCTACTAAGTCCC........................................................................................1922.50511003000000
..................................................................GGTTGGGATTTTTTAGATCAGCT............................................................................................................................................2322.00430000100000
..................................................................GGTTGGGATTTTTTAGATCAGT.............................................................................................................................................2222.00430000100000
..........................................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................................................2322.00400003100000
.....................................................................TGGGATTTTTTAGATCAGCAGG..........................................................................................................................................2222.00400002200000
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................2021.50310000200000
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................2121.50300001200000
..................................................................GGTTGGGATTTTTTAGATCAGG.............................................................................................................................................2221.50330000000000
.....................................................................TGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2321.50300000300000
..................................................................GGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2421.50300000300000
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................2021.50330000000000
.....................................................................TGGGATTTTTTAGATCAGCAC...........................................................................................................................................2121.50300000300000
......................................................................GGGATTTTTTAGATCAGC.............................................................................................................................................1821.50330000000000
....................................................................TTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2221.50310000200000
....................................................................TTGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2521.00210001000000
.................................................................TGGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2321.00220000000000
...........................................................................................TATTGCTATATAGCCATATTT.....................................................................................................................2121.00201001000000
..................................................................GGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2321.00220000000000
.....................................................................TGGGATTTTTTAGATCAG..............................................................................................................................................1821.00200000200000
....................................................................TTGGGATTTTTTAGATCAGCCT...........................................................................................................................................2221.00200001100000
....................................................................TTGGGATTTTTTAGATCAC..............................................................................................................................................1921.00210000100000
...................................................................GTTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2321.00220000000000
..........................................................................................................................TACTGGCCTACTAAGTCCCAAA.....................................................................................2221.00200001100000
..........................................................................................................................TACTGGCCTACTAAGTCCCAT......................................................................................2121.00210000100000
..........................................................................................................................TACTGGCCTACTAAGTCCCG.......................................................................................2021.00220000000000
...................................................................GTTGGGATTTTTTAGATCAGCT............................................................................................................................................2221.00210000100000
..................................................................GGTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2421.00200000200000
..........................................................................................................................TACTGGCCTACTAAGTCCCAAT.....................................................................................2221.00200001100000
..........................................................................TTTTTTAGATCAGCAGT..........................................................................................................................................1721.00200000200000
...........................................................................................................................ACTGGCCTACTAAGTCCCAACT....................................................................................2221.00220000000000
..................................................................GGTTGGGATTTTTTAGATCAT..............................................................................................................................................2121.00200000200000
..................................................................GGTTGGGATTTTTTAGATCAGCC............................................................................................................................................2321.00200000200000
droEre2
--------GAAGTC--GGG--------------T-TTTAATCGGAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACGTT------GAA-----------TATTA-------------------A-----AASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................TTGGGATTTTTTAGATCAGC.............................................................................................................................................2013907.0039072040301534870
....................................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................................................2213613.00361341083107826630
.....................................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2211044.001044601710358320
..................................................................GGTTGGGATTTTTTAGATCAGC.............................................................................................................................................221960.009602048029080
....................................................................TTGGGATTTTTTAGATCAGCA............................................................................................................................................211844.00844302410135870
.....................................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................................................211844.00844130193096290
....................................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................231382.0038210480103230
..................................................................GGTTGGGATTTTTTAGATCAGCA............................................................................................................................................231274.002741030042390
..........................................................................................................................TACTGGCCTACTAAGTCCCA.......................................................................................201201.0020110016001750
..........................................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................................................221181.0018151324011020
..................................................................GGTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................241149.001491015021310
..........................................................................................................................TACTGGCCTACTAAGTCCCAA......................................................................................211122.001221802000840
..................................................................GGTTGGGATTTTTTAGATCAG..............................................................................................................................................211108.00108001302930
....................................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................................................23187.0087001101750
.....................................................................TGGGATTTTTTAGATCAGC.............................................................................................................................................19177.007700701690
....................................................................TTGGGATTTTTTAGATCAG..............................................................................................................................................19176.0076001901560
...................................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................................................21163.006300900540
.....................................................................TGGGATTTTTTAGATCAGCA............................................................................................................................................20133.003310801230
....................................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................................................22133.0033001300200
...........................................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................................................22131.0031130001170
....................................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................................................22131.003100401260
..........................................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................................................23123.002330100190
....................................................................TTGGGATTTTTTAGATCA...............................................................................................................................................18122.002200100210
...................................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................................................23120.002000200180
.....................................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................................................22116.001600201130
..................................................................GGTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................24115.001500000150
....................................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................24114.001400301100
..........................................................................................................................TACTGGCCTACTAAGTCCC........................................................................................19114.001420100110
...................................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................................................22114.001400300110
...........................................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................................................23113.00136010060
....................................................................TTGGGATTTTTTAGATCAGA.............................................................................................................................................20112.001200000120
..................................................................GGTTGGGATTTTTTAGATCA...............................................................................................................................................20112.00120030090
.....................................................................TGGGATTTTTTAGATCAGCAT...........................................................................................................................................21110.00100020080
...........................................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................................................2119.0098000010
..................................................................GGTTGGGATTTTTTAGATCAGA.............................................................................................................................................2219.0090000090
..........................................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................................................2318.0080000080
.....................................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................................................2318.0080010070
..................................................................GGTTGGGATTTTTTAGATCAGCC............................................................................................................................................2317.0070000070
..........................................................................................................................TACTGGCCTACTAAGTCC.........................................................................................1817.0071000060
....................................................................TTGGGATTTTTTAGATCAGT.............................................................................................................................................2016.0060010050
..................................................................GGTTGGGATTTTTTAGATCAGCAT...........................................................................................................................................2415.0050010040
...................................................................GTTGGGATTTTTTAGATCAG..............................................................................................................................................2015.0050000050
..........................................................................................................................TACTGGCCTACTAAGTCCCAAA.....................................................................................2215.0050010040
.............................................................................................................................TGGCCTACTAAGTCCCAACATT..................................................................................2214.0042000020
.................................................................TGGTTGGGATTTTTTAGATCAGC.............................................................................................................................................2314.0040010030
..................................................................GGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................................................2514.0040010030
....................................................................TTGGGATTTTTTAGATCAGCC............................................................................................................................................2114.0040010030
..................................................................GGTTGGGATTTTTTAGATCAGCT............................................................................................................................................2314.0040010030
..................................................................GGTTGGGATTTTTTAGATC................................................................................................................................................1914.0040000040
....................................................................TTGGGATTTTTTAGATCAGCT............................................................................................................................................2114.0040010030
..................................................................GGTTGGGATTTTTTAGATCAGCG............................................................................................................................................2313.0030000030
....................................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................................................2213.0030000030
.....................................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2213.0030010020
..........................................................................................................................TACTGGCCTACTAAGTCCCAT......................................................................................2112.0020000020
..................................................................GGTTGGGATTTTTTAGATCAGT.............................................................................................................................................2212.0020000020
.....................................................................TGGGATTTTTTAGATCAG..............................................................................................................................................1812.0020000020
....................................................................TTGGGATTTTTTAGATCAGCAGTA.........................................................................................................................................2412.0020000020
...................................................................GTTGGGATTTTTTAGATCAGCAA...........................................................................................................................................2312.0020000020
...........................................................................................................................ACTGGCCTACTAAGTCCCA.......................................................................................1912.0020000020
....................................................................TTGGGATTTTTTAGATCAGCAGTTT........................................................................................................................................2512.0020000020
....................................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................................................2312.0020000020
...........................................................................................TATTGCTACATAGCCATATTT.....................................................................................................................2112.0020000020
....................................................................TTGGGATTTTTTAGATCAGCATA..........................................................................................................................................2312.0020000020
..................................................................GGTTGGGATTTTTTAGATCAGCTT...........................................................................................................................................2411.0010000010
.....................................................................TGGGATTTTTTAGATCAGCAAA..........................................................................................................................................2211.0010000010
...........................................................................................................................ACTGGCCTACTAAGTCCCAAT.....................................................................................2111.0010000010
....................................................................TTGGGATTTTTTAGATCAGCACA..........................................................................................................................................2311.0010000010
...........................................................................................TATTGCTACATAGCCATAT.......................................................................................................................1911.0010000010
.........................................................................................................................CTACTGGCCTACTAAGTCCCA.......................................................................................2111.0010010000
.......................................................................GGATTTTTTAGATCAGCAG...........................................................................................................................................1911.0010000010

Generated: 10/20/2015 at 07:48 PM