ID:

dpe_1993

 Coordinate:

scaffold_69:132022-132109 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.3

Flybase annnotation

CDS [Dper\GL21340-cds]; exon [dper_GLEANR_3276:1]; CDS [Dper\GL21340-cds]; exon [dper_GLEANR_3276:2]; intron [Dper\GL21340-in]

No Repeatable elements found

mature
  1. scaffold_0:9907813-9907836 +
  2. scaffold_0:10684685-10684708 +
  3. dpe_1993  scaffold_69:132053-132076 +
  4. scaffold_2:8251982-8252005 +
star
  1. scaffold_10:2385954-2385979 +
  2. scaffold_0:6414763-6414788 +
  3. scaffold_0:6704676-6704701 -
  4. scaffold_0:6825515-6825540 +
  5. scaffold_0:9907783-9907808 +
  6. scaffold_0:10684655-10684680 +
  7. scaffold_0:10772209-10772234 +
  8. dpe_1993  scaffold_69:132023-132048 +
  9. scaffold_2:982423-982448 -
  10. scaffold_2:8251952-8251977 +
  11. scaffold_3:6432880-6432905 +
  12. scaffold_4:4466131-4466156 -
  13. scaffold_7:1982292-1982317 +
  14. scaffold_7:2579302-2579327 +
  15. scaffold_7:3042202-3042227 +
  16. scaffold_7:3646195-3646220 +
  17. scaffold_16:851109-851134 -
  18. scaffold_19:1635435-1635460 -
  19. scaffold_46:19872-19897 +
  20. scaffold_46:69488-69513 -
  21. scaffold_2:6342314-6342339 -
  22. scaffold_3:6692221-6692246 -
  23. scaffold_4:2561310-2561335 -

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------##################################################
GCCGCTGTTCCACGGCTATTCCGTGCTTTCCACCTTCTTCGCATTTACAGGTAAAGTCGAGCCACAGAGTCTGCAGCGATGCCGAAACGACCAGCGGCGTCCTTTGGCGAAGTTGTGGCCCACTACTCGCTTCCTCAGCCCCGGCGTCTTCGGGATTCTGGCGTCTGGTGCGATGGAAAGACCGTGGA
***************************************************.((....................((.(((((((..........)))))))))))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
 M021
embryo
 V042
embryo
............................................TTACAGGTAAAGTCGAGCCACAG......................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
............................................TTACAGGTAAAGTCGAGCC............................................................................................................................. 19 0 2 0.50 1 0 1 0 0 0
.................................................................................CCGAAACGACCAGCGGCGTCCTTT................................................................................... 24 0 4 0.50 2 2 0 0 0 0
.................................................................................CCGAAACGGCCAGCGGCGTCC...................................................................................... 21 1 4 0.25 1 1 0 0 0 0
.................................................................................CCGAAACGACCAGCGGCGTCCTTTG.................................................................................. 25 0 4 0.25 1 1 0 0 0 0
.................................................................................CCGAAACGACCAGCGGCGTCCTT.................................................................................... 23 0 4 0.25 1 1 0 0 0 0
..................................................................................CGAAACGACCAGCGGCGTCCT..................................................................................... 21 0 4 0.25 1 1 0 0 0 0
.................................................................................CCGAAACGACCAGCGGCGTCCT..................................................................................... 22 0 4 0.25 1 1 0 0 0 0
.......................................................................TGCAGCGATGCCGAAACGACCAGCGG........................................................................................... 26 0 20 0.25 5 4 1 0 0 0
.......................................................................TGCAGCGATGCCGAAACGACCAGCGGCCT........................................................................................ 29 1 4 0.25 1 0 1 0 0 0
...................................................................................................................................................CTTCGGGAGTCAGCCGTCT...................... 19 3 10 0.20 2 1 0 1 0 0
........................................................................................................................................................................TGCGATGGAAAGACCGTGGA 20 0 6 0.17 1 1 0 0 0 0
...................................................................................................................................................................TCTGGTGCGATGGAAAGACCGTGG. 24 0 6 0.17 1 1 0 0 0 0
...................................................TAAAGTCGAGCCACAGAGTCTGCAGC............................................................................................................... 26 0 20 0.15 3 0 1 0 2 0
...................................................................................GAAACGACCAGCCGTGTC....................................................................................... 18 2 8 0.13 1 0 0 1 0 0
.....................................................................................AAAGACAAGCGGCGTCCTTTT.................................................................................. 21 3 9 0.11 1 0 0 0 0 1
.....................................................................TCTGCAGCGATGCCGAAACGACCA............................................................................................... 24 0 20 0.10 2 2 0 0 0 0
.......................................................................TGCAGCGATGCCGAAACGACCAG.............................................................................................. 23 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................................................TCTGGTGCGATGGAAAGACCG.... 21 0 10 0.10 1 0 1 0 0 0
............................................................................................................................................................TCTGGCGTCTGGTGCGATGGAAAGAC...... 26 0 19 0.05 1 1 0 0 0 0
............................................................................................................................................................TCTGGCGTCTGGTGCTATGGAAAGAC...... 26 1 19 0.05 1 0 1 0 0 0
...................................................TAAAGTCGAGCCACAGAGTCTG................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.............................................................CCACAGATTCTGCAGTGA............................................................................................................. 18 2 20 0.05 1 1 0 0 0 0
...................................................TAAAGTCGAGCCACAGAGTCTGCAG................................................................................................................ 25 0 20 0.05 1 0 0 0 1 0
........................................................................................................................................................GGATTCTCGGGTCGGGTGCGA............... 21 3 20 0.05 1 0 0 1 0 0
..................................................................................................................................................................GTCTGGTGCGATGGAAAGAC...... 20 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................TCTGGCGTATGGTGCGATGGAA.......... 22 1 20 0.05 1 1 0 0 0 0
.......................................................................TGCAGCGATGCCGAAACGACCAGCG............................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.................................................................................CCGAAACGACCAGCGGCG......................................................................................... 18 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CGGCGACAAGGTGCCGATAAGGCACGAAAGGTGGAAGAAGCGTAAATGTCCATTTCAGCTCGGTGTCTCAGACGTCGCTACGGCTTTGCTGGTCGCCGCAGGAAACCGCTTCAACACCGGGTGATGAGCGAAGGAGTCGGGGCCGCAGAAGCCCTAAGACCGCAGACCACGCTACCTTTCTGGCACCT
***********************************************************************************.((....................((.(((((((..........)))))))))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body		 V057
head
........................................................................................................................................................CCTAAGACCGCAGACCACGCTACCTT.......... 26 0 19 4.84 92 91 1 0 0 0
..................................................................CTCAGACGTCGCTACGGCTTTGCTG................................................................................................. 25 0 20 2.75 55 55 0 0 0 0
................................................................GTCTCAGACGTCGCTACGGCTTTGCTG................................................................................................. 27 0 20 2.35 47 47 0 0 0 0
....................................................................CAGACGTCGCTACGGCTTTGCTG................................................................................................. 23 0 20 2.10 42 41 0 1 0 0
.........................................................................................................................................................CTAAGACCGCAGACCACGCTACCTT.......... 25 0 20 1.70 34 17 16 1 0 0
.....................................................................AGACGTCGCTACGGCTTTGCTG................................................................................................. 22 0 20 1.35 27 25 0 0 2 0
................................GGAAGAAGCGTAAATGTCCATT...................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................TAAGACCGCAGACCACGCTACCTT.......... 24 0 20 0.85 17 15 1 1 0 0
.............................................................GGTGTCTCAGACGTCGCTACGGCTT...................................................................................................... 25 0 20 0.80 16 0 16 0 0 0
...................................................................TCAGACGTCGCTACGGCTTTGCTG................................................................................................. 24 0 20 0.75 15 14 1 0 0 0
........................................................................................................................................................CCTAAGACCGCAGACCACGCTACCT........... 25 0 19 0.53 10 10 0 0 0 0
.................................................................TCTCAGACGTCGCTACGGCTTTGCTG................................................................................................. 26 0 20 0.50 10 10 0 0 0 0
......................................................................GACGTCGCTACGGCTTTGCTG................................................................................................. 21 0 20 0.45 9 9 0 0 0 0
.............................................................................................................................................................GACCGCAGACCACGCTACCTT.......... 21 0 20 0.35 7 6 1 0 0 0
.............................................................GGTGTCTCAGACGTCGCTACGGCT....................................................................................................... 24 0 20 0.35 7 3 4 0 0 0
......................................................................................................................................AGTCGGGGCCGCAGAAGCCCTAA............................... 23 0 3 0.33 1 0 1 0 0 0
.......................................................................................................................................................CCCTAAGACCGCAGACCACGCTACCTT.......... 27 0 3 0.33 1 1 0 0 0 0
.....................GCACGAAAGGTGGAAGAAGCGTAAAT............................................................................................................................................. 26 0 20 0.30 6 6 0 0 0 0
.GGCGACAAGGTGCCGATAAGGCACG.................................................................................................................................................................. 25 0 20 0.25 5 1 0 1 3 0
..................................................................................GCATTGTTGGTCGCCGCA........................................................................................ 18 2 4 0.25 1 1 0 0 0 0
....................................................................CAGACGTCGCTACGGCTTTGCTGGT............................................................................................... 25 0 20 0.20 4 3 0 1 0 0
............................................................CGGTGTCTCAGACGTCGCTACGGCTT...................................................................................................... 26 0 20 0.20 4 2 2 0 0 0
....................................................................CAGACGTCGCTACGGCTTTGCT.................................................................................................. 22 0 20 0.20 4 4 0 0 0 0
.......................ACGAAAGGTGGAAGAAGCGTAAAT............................................................................................................................................. 24 0 20 0.20 4 4 0 0 0 0
.............................................................GGTGTCTCAGACGTCGCT............................................................................................................. 18 0 20 0.20 4 0 4 0 0 0
..................................................................CTCAGACGTCGCTACGGCTTTGCT.................................................................................................. 24 0 20 0.20 4 4 0 0 0 0
.....................................................................AGACGTCGCTACGGCTTTGCTGGT............................................................................................... 24 0 20 0.15 3 3 0 0 0 0
.................................................................TCTCAGACGTCGCTACGGCTTTGCT.................................................................................................. 25 0 20 0.15 3 3 0 0 0 0
............................................................CGGTGTCTCAGACGTCGCTACGGCT....................................................................................................... 25 0 20 0.15 3 3 0 0 0 0
.GGCGACAAGGTGCCGATAAGGCAC................................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0
...........................................................TCGGTGTCTCAGACGTCGCTACGGCT....................................................................................................... 26 0 20 0.15 3 2 1 0 0 0
...CGACAAGGTGCCGATAAGGCACG.................................................................................................................................................................. 23 0 20 0.15 3 1 0 1 1 0
...................................................................................CTTTGGTGGTCGCCACAAGA..................................................................................... 20 3 8 0.13 1 0 0 0 0 1
........................................................................................................................................................CCTAAGACCGCAGACCAAGCTACCTT.......... 26 1 19 0.11 2 2 0 0 0 0
..............................................................GTGTCTCAGACGTCGCTACGGCT....................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
................................................................GTCTCAGACGTCGCTACGGCTTTGCT.................................................................................................. 26 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................CCGCAGACCACGCTACCTT.......... 19 0 20 0.10 2 2 0 0 0 0
............................................................CGGTGTCTCAGACGTCGCT............................................................................................................. 19 0 20 0.10 2 0 2 0 0 0
........................CGAAAGGTGGAAGAAGCGTAAATGT........................................................................................................................................... 25 0 20 0.10 2 0 0 0 2 0
...................AGGCACGAAAGGTGGAAGAAGCGTAAAT............................................................................................................................................. 28 0 20 0.10 2 2 0 0 0 0
........................................................................CGTCGCTACGGCTTTGCTG................................................................................................. 19 0 20 0.10 2 2 0 0 0 0
....................................................................CAGACGTCGCTACGGCTTTGC................................................................................................... 21 0 20 0.10 2 0 2 0 0 0
...................................................................TCAGACGTCGCTACGGCTTTGCT.................................................................................................. 23 0 20 0.10 2 2 0 0 0 0
......................................................................CACGTCGCTACGGCTTTGCTG................................................................................................. 21 1 20 0.10 2 2 0 0 0 0
..................................................................ATCAGACGTCGCTACGGCTTTGCTG................................................................................................. 25 1 20 0.10 2 2 0 0 0 0
...................AGGCACGAAAGGTGGAAGAAGCGT................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
...................................................................TCAGACGTCGCTACGGCTTTGCTGGT............................................................................................... 26 0 20 0.10 2 2 0 0 0 0
................................................................GTCTCAGACGTCGCTACGGCTT...................................................................................................... 22 0 20 0.10 2 1 0 1 0 0
..........................................................CTCGGTGTCTCAGACGTCGCTACGGCT....................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
CGGCGACAAGGTGCCGATAAGGCAC................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
.GGCGACAAGGTGCCGATAAGGCACGA................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0
............................................................................................................................................................AGACCGCAGACCACGCTACCTT.......... 22 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................CCGCAGACCACGCTACCTTT......... 20 0 20 0.10 2 2 0 0 0 0
...........................................................TCGGTGTCTCAGACGTCGCTACGGC........................................................................................................ 25 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................................................CTAAGACCGCAGACCAAGCTACCTT.......... 25 1 20 0.10 2 2 0 0 0 0
..GCGACAAGGTGCCGATAAGGCAC................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
................................................................................................................AACACCGGGTGATGAGCGACGGAGT................................................... 25 1 17 0.06 1 1 0 0 0 0
........................................................................................................................................................CCTAAGACCGCAGACCTCGCTACCT........... 25 1 19 0.05 1 1 0 0 0 0
........................................................................................................................................................CCGAAGACCGCAGACCACGCTACCTT.......... 26 1 19 0.05 1 1 0 0 0 0
........................................................................................................................................................CCTAAGACCGCAGACCACGCTACCTTT......... 27 0 19 0.05 1 1 0 0 0 0
.......................................................................ACGTCGCTACGACTTTGCTG................................................................................................. 20 1 20 0.05 1 1 0 0 0 0
..................................................................CTCAGACGTCGCTACGGCTTTGCTGG................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................TATGACCGCAGACCACGCTACCTT.......... 24 1 20 0.05 1 0 0 1 0 0
............................................................CGGTGTCTCAGACGTCGCTAC........................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
..GCGACAAGGTGCCGATAAGGCACG.................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
............................................................TGGTGTCTCAGACGTCGCTAAGGCT....................................................................................................... 25 2 20 0.05 1 1 0 0 0 0
..................................................................ATCAGACGTCGCTACGGCTT...................................................................................................... 20 1 20 0.05 1 1 0 0 0 0
....................................................................CAGACGTCGCTACGACTTTGCTG................................................................................................. 23 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................AAGACCGCAGACCACGCTACCTT.......... 23 0 20 0.05 1 0 0 1 0 0
.....................................................................GGACGTCGCTACGGCTTTGCTG................................................................................................. 22 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................AGACCGCAGACCACGCTACCT........... 21 0 20 0.05 1 1 0 0 0 0
......................................................................GACGTCGCTACGGCTTTGCTGGTC.............................................................................................. 24 0 20 0.05 1 1 0 0 0 0
.............................................................GGTGTCTAAGACGTCACT............................................................................................................. 18 2 20 0.05 1 1 0 0 0 0
....................GGCACGAAAGGTGGAAGAAGCG.................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
..................................................................CTCAGACGTCGCTACGGCTTTGCTGGT............................................................................................... 27 0 20 0.05 1 1 0 0 0 0
....................TGCACGAAAGGTGGAAGAAGCGTAAAT............................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
...............................................................TGTCTCAGACGTCGCTACGGCTTTGCT.................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.................................................................TCTCAGACGTCGCTACGGCTCTG.................................................................................................... 23 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................CCGCAGACCACGGTACCTTTC........ 21 1 20 0.05 1 1 0 0 0 0
CGGCGACAGGGTGCGGATA......................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 1
...................................................................ACAGACGTCGCTACGGCTTTGCTG................................................................................................. 24 1 20 0.05 1 1 0 0 0 0
......................................................TCACCTCGGTGTCTCAGACGTCGCT............................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................ACCGCAGACCACGCTACCTT.......... 20 0 20 0.05 1 1 0 0 0 0
.........................................................................GTCGCTACGGCTTTGCTGGT............................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.....................................................................GGACGTGGCTACGGCTTTGCTGGT............................................................................................... 24 2 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................CTAAGACCGCAGACCAGGCTACCTT.......... 25 1 20 0.05 1 1 0 0 0 0
.......................................................................ACGTCGCTACGGCTTTGCTGGT............................................................................................... 22 0 20 0.05 1 1 0 0 0 0
......................................................................GACGTCGCTACGCCTTTGCTG................................................................................................. 21 1 20 0.05 1 1 0 0 0 0
...............................................................TGTCTCAGACGTCGCTACGGCTTTGCTG................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................CTAAGACCGCAGACCATGCTACCTT.......... 25 1 20 0.05 1 1 0 0 0 0
........................................................................CGTCGCTACGGCTTTGCTGGT............................................................................................... 21 0 20 0.05 1 0 0 1 0 0
......................................................TCAGCTCGGTGTCTCAGACGTCGCTACG.......................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
.....................................................................AGACGTCGCTACGGCTTTGCTGG................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................CTAAGACCGCAGACCACGCTACCT........... 24 0 20 0.05 1 1 0 0 0 0
.....................................................TTCAGCTCGGTGTGTCAGACGT................................................................................................................. 22 1 20 0.05 1 1 0 0 0 0
...........................................................AAGGTGTCTCAGACGTCGCTACGGC........................................................................................................ 25 2 20 0.05 1 1 0 0 0 0
....................GGCACGAAAAGTGGAAGAAGCGTAAA.............................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................CCGCAGACCACGCTACCT........... 18 0 20 0.05 1 1 0 0 0 0
....................GGCACAAAAGGTGGAAGAAGCGTAAAT............................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
.....................................................................TGACGTCGCTACGGCTTTGCTGGT............................................................................................... 24 1 20 0.05 1 1 0 0 0 0
............................................................TGGTGTCTCAGACGTCGCTACGGCT....................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
............................................................................GCTACGGCTTTGCTGGTCC............................................................................................. 19 1 20 0.05 1 1 0 0 0 0
................................................................GTCTCAGACGTCGCTACGGC........................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
.....................................................................AGACGTCGCTACGGCTTTGCTGGTC.............................................................................................. 25 0 20 0.05 1 1 0 0 0 0
AGGCGACAAGGTGCCGATAAGGCACG.................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
...CGACAAGGTGCCGATAAGGCAC................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
............................................................CGGTGTCTCAGACGTCACTACGGCT....................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
.............................................................GGTGTCTCAGACGTCGCTACGG......................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
......................................................TCATCTCGGTGTCTCAGACGTCGCT............................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
...................................................ATTTCAGCTCGGTGTCTCAGACGT................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................CCTAAGACCGCAGACCACGCTACTTT.......... 26 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................CGCAGACCACGCTACCTT.......... 18 0 20 0.05 1 1 0 0 0 0
.....................................................................AGACGTCGCTACGGCTTTGCT.................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................AGACCGCAGACCAAGCTACCTT.......... 22 1 20 0.05 1 1 0 0 0 0
.....................GCACGAAAGGTGGAAGAGGCGTAAAT............................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
.........................GAAAGGTGGAAGAAGCGTAAAT............................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
..................................................................CTCAGACGTCGCTACGTCTTTGCTG................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
..................................................................CTCATACGTCGCTACGGCTTTGCTG................................................................................................. 25 1 20 0.05 1 0 0 1 0 0
..........................................................................TCGCTACGGCTTTGCTGGT............................................................................................... 19 0 20 0.05 1 1 0 0 0 0
....................GGCACGAAAGGTGGAAGAAGCGTAAA.............................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
......................CACGAAAGGAGGAAGAAGCGTAAAT............................................................................................................................................. 25 1 20 0.05 1 0 0 1 0 0
.GGCGACAAGGTGCCGAGAAGGCACG.................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
.GGCCACGAGGTGCCGCTAA........................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1
.....................................................................AGACGTCGCTACGCCTTTGCTG................................................................................................. 22 1 20 0.05 1 1 0 0 0 0
....................................................................CAGACGTCGCTACGGCTTTGCTGG................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
...........................................................TCGGTGTCTCAGACGTCGCTA............................................................................................................ 21 0 20 0.05 1 0 1 0 0 0
.............................................................GGTATCTCAGACGTCGCTAC........................................................................................................... 20 1 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................CTAAGACCGCAGACCACGCTACCTTA......... 26 1 20 0.05 1 1 0 0 0 0
................................................................GTCTCAGACATCGCTACGGCTTTGCTG................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................ACGCAGACCACGCTACCTT.......... 19 1 20 0.05 1 1 0 0 0 0
......................................................ACAGCTCGGTGTCTCAGACGTCGCT............................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
.......................................................CAGCTCGGTGTCTCAGACGT................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................GACCGCAGACCACGCTACCT........... 20 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................AAGACCGCAGACCAGGCTACCTT.......... 23 1 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_69:131972-132159 + dpe_1993 GCCGCTGTTCCACGGCTATTCCGTGCTTTCCACCTTCTTCGCATTTACAGGTAAAGTCGAGCCACAGAGTCTGCAGCGATGCCGAAACGACCAGCGGCGTCCTTTGGCGAAGTTGTGGCCCACTACTCGCTTCCTCAGCCCCGGCGTCTTCGGGATTCTGGCGTCTGGTGCGATGGAAAGACCGTGGA
dp5 XL_group1e:10333430-10333617 - GCCGCTGTTCCACGGCTATTCCGTGCTTTCCACCTTCTTCGCATTTACAGTTAAAGTCGAGCCACAGAGTCTGCAACGATGCCGAAACGACCAGCGGCGTCCTTTGGCGAAGTTGTGGCCCACTACTCCCTTCCTCAGGCCCGGCGTCTTCGGGATTCTGGCGTCTGGTGCGATGGAAAGACCGTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCCGCTGTTCCACGGCTATTCCGTGCTTTCCACCTTCTTCGCATTTACAGGTAAAGTCGAGCCACAGAGTCTGCAGCGATGCCGAAACGACCAGCGGCGTCCTTTGGCGAAGTTGTGGCCCACTACTCGCTTCCTCAGCCCCGGCGTCTTCGGGATTCTGGCGTCTGGTGCGATGGAAAGACCGTGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................TTACAGGTAAAGTCGAGCCACAG.........................................................................................................................2320.501010000
............................................TTACAGGTAAAGTCGAGCC.............................................................................................................................1920.501000001
.................................................................................CCGAAACGACCAGCGGCGTCCTTT...................................................................................2440.502020000
.................................................................................CCGAAACGACCAGCGGCGTCCTTTG..................................................................................2540.251010000
.................................................................................CCGAAACGACCAGCGGCGTCCTT....................................................................................2340.251010000
..................................................................................CGAAACGACCAGCGGCGTCCT.....................................................................................2140.251010000
.................................................................................CCGAAACGACCAGCGGCGTCCT.....................................................................................2240.251010000
.......................................................................TGCAGCGATGCCGAAACGACCAGCGG...........................................................................................26200.255040001
........................................................................................................................................................................TGCGATGGAAAGACCGTGGA2060.171010000
...................................................................................................................................................................TCTGGTGCGATGGAAAGACCGTGG.2460.171010000
...................................................TAAAGTCGAGCCACAGAGTCTGCAGC...............................................................................................................26200.153200001
.....................................................................TCTGCAGCGATGCCGAAACGACCA...............................................................................................24200.102020000
.......................................................................TGCAGCGATGCCGAAACGACCAG..............................................................................................23200.102020000
...................................................................................................................................................................TCTGGTGCGATGGAAAGACCG....21100.101000001
............................................................................................................................................................TCTGGCGTCTGGTGCGATGGAAAGAC......26190.051010000
...................................................TAAAGTCGAGCCACAGAGTCTG...................................................................................................................22200.051010000
...................................................TAAAGTCGAGCCACAGAGTCTGCAG................................................................................................................25200.051100000
..................................................................................................................................................................GTCTGGTGCGATGGAAAGAC......20200.051000001
.......................................................................TGCAGCGATGCCGAAACGACCAGCG............................................................................................25200.051010000
.................................................................................CCGAAACGACCAGCGGCG.........................................................................................18200.051010000
dp5
GCCGCTGTTCCACGGCTATTCCGTGCTTTCCACCTTCTTCGCATTTACAGTTAAAGTCGAGCCACAGAGTCTGCAACGATGCCGAAACGACCAGCGGCGTCCTTTGGCGAAGTTGTGGCCCACTACTCCCTTCCTCAGGCCCGGCGTCTTCGGGATTCTGGCGTCTGGTGCGATGGAAAGACCGTGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................TTACAGTTAAAGTCGAGCCACAGAG.......................................................................................................................25120.3340000002020
...................................................................................................TCCTTTGGCGAAGTTGTGGCCCACTAC..............................................................2730.3310100000000
..................................................TTAAAGTCGAGCCACAGAGTCTGC..................................................................................................................24120.1720000000200
............................................TTACAGTTAAAGTCGAGCCACAGAGT......................................................................................................................26120.1720000000020
..........CACGGCTATTCCGTGCTTTCCACCTT........................................................................................................................................................26130.1520000000020
....................................................AAAGTCGAGCCACAGAGT......................................................................................................................18170.1220100000010
..............................................................................................................................................................TGGCGTCTGGTGCGATGGAAAG........22180.1120000000020
............................................TTACAGTTAAAGTCGAGCCACAGAGTC.....................................................................................................................27110.0910100000000
............................................TTACAGTTAAAGTCGAGCCACAG.........................................................................................................................23120.0810100000000
...................................................TAAAGTCGAGCCACAGAGTCT....................................................................................................................21120.0810100000000
..................................................TTAAAGTCGAGCCACAGAGTCTG...................................................................................................................23120.0810100000000
................................................AGTTAAAGTCGAGCCACAGAG.......................................................................................................................21120.0810000001000
.............................................TACAGTTAAAGTCGAGCCACAGAGT......................................................................................................................25120.0810000000100
............................................TTACAGTTAAAGTCGAGCCAC...........................................................................................................................21120.0810000001000
.........................................................................................................................................................GATTCTGGCGTCTGGTGCG................19140.0710000001000
........................................................................................................................................................GGATTCTGGCGTCTGGT...................17140.0710000000001

Generated: 06/08/2015 at 05:01 PM