ID:

dpe_1990

 Coordinate:

scaffold_685:9093-9243 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.3 -21.0 -20.7

Flybase annnotation

exon [dper_GLEANR_2028:2]; CDS [Dper\GL18247-cds]; intron [Dper\GL18247-in]

No Repeatable elements found

mature
  1. scaffold_4848:766-784 -
  2. scaffold_1519:427-445 +
  3. scaffold_5733:1394-1412 -
  4. scaffold_6554:747-765 +
  5. dpe_1990  scaffold_685:9171-9189 -
star
  1. scaffold_1:5876631-5876650 -
  2. scaffold_1:5882455-5882474 -
  3. scaffold_1415:2955-2974 -
  4. scaffold_4655:350-369 +
  5. scaffold_2007:3484-3503 -
  6. scaffold_4848:723-742 -
  7. scaffold_880:5948-5967 +
  8. scaffold_2171:73-92 -
  9. scaffold_1519:469-488 +
  10. scaffold_5733:1351-1370 -
  11. scaffold_6554:789-808 +
  12. dpe_1990  scaffold_685:9128-9147 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGGATGCTCAAAACGTTTTGAATGTAAATATCTTTAGACTGGCAAAGAAGTAACCTCTAAAGTATCTGCCCCTTGGGGACCTACAGGCCAGCTTGGAGTGGAGGAGAATGCGTTGGTGTTCCGGTTATCCGCAGGCCAGCCTCTGGCGCGGACGTGTTCAACAGCTCGGCGAGCGACTGATTTGCTGCCGCAAATGACCAGACTATTGTGTAGTTTTTTTGGGACTTATTTCTATTCGTTGACTGAGTGA
********************************************************************************************************..(((((((((.(((((..((((..((...))..))))...))))).)))))))))......************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
........................................................................................................GAGAATGCGTTGGTGTTCC................................................................................................................................ 19 0 5 1.40 7 7 0
..................................................................................................GTGGAGGAGAATGCGTTGG...................................................................................................................................... 19 0 5 0.80 4 4 0
.............................................................................................................................................................................................................ATTGTGTAGTTTTTTTGGG........................... 19 0 5 0.80 4 4 0
.............................................................................................TTGGAGTGGAGGAGAATGCGTT........................................................................................................................................ 22 0 5 0.40 2 2 0
..............................................................................................TGGAGTGGAGGAGAATGCGTT........................................................................................................................................ 21 0 5 0.40 2 2 0
.....................................................................................................GAGGAGAATGCGTTGGTGTT.................................................................................................................................. 20 0 5 0.40 2 2 0
..........................................................................................................GAATGCGTTGGTGTTCCGG.............................................................................................................................. 19 0 7 0.29 2 2 0
.....................................................................................................................................................................................................................................TTTCTATTCGTTGACTGAGTG. 21 0 18 0.28 5 5 0
........................................................................................CCAGCTTGGAGTGGAGGAGAGT............................................................................................................................................. 22 1 9 0.22 2 2 0
......................................................................................................AGGAGAATGCGTTGGTGTT.................................................................................................................................. 19 0 5 0.20 1 1 0
...........................................................................................................................................................................................................CTATTGTGTAGTTTTTTTGGG........................... 21 0 5 0.20 1 1 0
.........................................................................................................AGAATGCGTTGGTGTTCCG............................................................................................................................... 19 0 5 0.20 1 1 0
.......................................................................................................GGAGAATGCGTTGGTGTTCC................................................................................................................................ 20 0 5 0.20 1 1 0
.......................................................................................................GGAGAATGTGTTGGTGCTCC................................................................................................................................ 20 2 5 0.20 1 1 0
.....................................................................................................GAGGAGAATGCGTTGGTGTTC................................................................................................................................. 21 0 5 0.20 1 1 0
.................................................................................................AGTGGAGGAGATTGCGTTGGTT.................................................................................................................................... 22 2 5 0.20 1 1 0
.......................................................................................................GGAGAATGCGTTGGTGTTC................................................................................................................................. 19 0 5 0.20 1 1 0
......................................................................................................AGGAGAATGCGTTGGTGTTCC................................................................................................................................ 21 0 5 0.20 1 1 0
..............................................................................................TGGAGTGGAGGAGAATGCGTTGGT..................................................................................................................................... 24 0 5 0.20 1 1 0
.................................................................................................AGTGGAGGAGAATGCGTTGG...................................................................................................................................... 20 0 5 0.20 1 1 0
..............................................................................................TGGAGTGGAGGAGAATGCGTTTTC..................................................................................................................................... 24 3 5 0.20 1 1 0
...................................................................................................TGGAGGAGATTGCGTTGGT..................................................................................................................................... 19 1 5 0.20 1 1 0
.............................................................................................................................................................................................................ATTGTCTATTTTTTTTGGGA.......................... 20 2 6 0.17 1 0 1
..................................................................................................GTGGAGGAAATTGCGTTGG...................................................................................................................................... 19 2 6 0.17 1 1 0
.................................................................................................................................................................................................AATGACCAGACTATTGTGTAG..................................... 21 0 12 0.17 2 2 0
..........................................................................................................GAATGCGTTGGTGTTCCGGTT............................................................................................................................ 21 0 7 0.14 1 1 0
..................................TTAGACTGGCAAAGAAGTAAC.................................................................................................................................................................................................... 21 0 7 0.14 1 1 0
...................................TATACTGGCAAAGAAGTAAC.................................................................................................................................................................................................... 20 1 7 0.14 1 1 0
...........................................................................................GCTTGGAGTGGAGGAGAGTGCG.......................................................................................................................................... 22 1 8 0.13 1 1 0
...........................................................................................GCTTGGAGTGGAGGAGAATGCG.......................................................................................................................................... 22 0 8 0.13 1 1 0
..............................................................................................TGGAGTGGAGGAGAATGCG.......................................................................................................................................... 19 0 8 0.13 1 1 0
............................................................................................CTTGGAGTGGAGGAGAATG............................................................................................................................................ 19 0 9 0.11 1 1 0
......................................................................................TGCCAGCTTGGAGTGGAGG.................................................................................................................................................. 19 1 9 0.11 1 1 0
.....................................................................................................................TGTTCCGGTTATCCGAAGGCC................................................................................................................. 21 1 9 0.11 1 1 0
...........................................................................................GCTTGGAGTGGAGGAGAATG............................................................................................................................................ 20 0 9 0.11 1 1 0
...........................................................AAAGTATCTGCCCCTTGGGGAA.......................................................................................................................................................................... 22 1 9 0.11 1 1 0
......................................................................................GGCCAGCTTGGAGTGGAGG.................................................................................................................................................. 19 0 9 0.11 1 1 0
............................................................................................CTTGGAGTGGAGGAGAATGC........................................................................................................................................... 20 0 9 0.11 1 1 0
....................................................................................................................................................................................................GACCGGACTATTGTGTAGTTT.................................. 21 1 11 0.09 1 1 0
..................................................................................................................................................GCGCGGACGTGTTCAACAGC..................................................................................... 20 0 12 0.08 1 1 0
.......................................................................................................................................................GACGTGTTCAACAGCTCGGC................................................................................ 20 0 12 0.08 1 0 1
.........................................................................................................................................................CGTGTTCAACAGCTCGGCGAT............................................................................. 21 1 12 0.08 1 1 0
................................................................................................................................TCCGCAGGCCGGCCTCTG......................................................................................................... 18 1 13 0.08 1 0 1
......................................................................................................................................................................................................................................TTCTGTTCGTTGACTGAGTGA 21 1 18 0.06 1 1 0
........................................................................................................................................................................................................................................CTATTCGTTGACTGAGTGA 19 0 18 0.06 1 1 0
.................................................................................................................................................................................................................................CTTATTTCTATTCGTTGACTGAGT.. 24 0 18 0.06 1 0 1
.......................................................................................................................................................................................................................................TCTATTCGTTGACTGAGTG. 19 0 18 0.06 1 1 0

Anti-sense strand reads

GACCTACGAGTTTTGCAAAACTTACATTTATAGAAATCTGACCGTTTCTTCATTGGAGATTTCATAGACGGGGAACCCCTGGATGTCCGGTCGAACCTCACCTCCTCTTACGCAACCACAAGGCCAATAGGCGTCCGGTCGGAGACCGCGCCTGCACAAGTTGTCGAGCCGCTCGCTGACTAAACGACGGCGTTTACTGGTCTGATAACACATCAAAAAAACCCTGAATAAAGATAAGCAACTGACTCACT
*************************************************************************************..(((((((((.(((((..((((..((...))..))))...))))).)))))))))......******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V057
head
 M042
female body
 V042
embryo
............................................................................CCCTGGATGTCCGGTCGAACC.......................................................................................................................................................... 21 0 8 0.63 5 5 0 0 0
................................................................................GGATGTCCGGTCGAACCTCA....................................................................................................................................................... 20 0 9 0.44 4 4 0 0 0
..................................................CATTGGAGATTTCATAGACGG.................................................................................................................................................................................... 21 0 8 0.25 2 2 0 0 0
.....................................................................................................................................................GCCTGCACAAGTTGTCGAG................................................................................... 19 0 12 0.25 3 3 0 0 0
.....................................................................................................................................................GCCTGCACAAGTTGTCGAGCC................................................................................. 21 0 12 0.17 2 2 0 0 0
........................................................................................................................ATGCCAATGGGCGTGCGGTC............................................................................................................... 20 3 12 0.17 2 1 1 0 0
...............................................................................................................GCAACCACAAGGCCAATAGG........................................................................................................................ 20 0 7 0.14 1 1 0 0 0
.......................................................................GGAACCCCTGGATGTCCGGT................................................................................................................................................................ 20 0 7 0.14 1 1 0 0 0
..........................................................................................................................................................................................................................AAACCCTGAATAAAGATAAG............. 20 0 14 0.14 2 2 0 0 0
.............................................................................CCTGGATGTCCGGTCGAACC.......................................................................................................................................................... 20 0 8 0.13 1 1 0 0 0
............................................................................CCCAGGATGTCCGGTCGAACC.......................................................................................................................................................... 21 1 8 0.13 1 1 0 0 0
...........................................................................CACCTGGATGTCCGGTCGAACCTCACC..................................................................................................................................................... 27 1 8 0.13 1 1 0 0 0
.......................................................GAGATTTCATAGACGGGGAAC............................................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0
................................................................................GGATGTCCGGTCGAACCTCAC...................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0
......................................................GGAGATTTCATAGACGGG................................................................................................................................................................................... 18 0 10 0.10 1 1 0 0 0
......................................................................................................................................................CCTGCACAAGTTGTCGAGC.................................................................................. 19 0 12 0.08 1 1 0 0 0
.....................................................................................................................................................GCCTGCACAAGTTGTCGAGC.................................................................................. 20 0 12 0.08 1 1 0 0 0
........................................................................................................................................................TGCACAAGTTGTCGAGCCGC............................................................................... 20 0 12 0.08 1 1 0 0 0
.............................................................................................................................................GAGACCGCGCCTGCACAAGTT......................................................................................... 21 0 12 0.08 1 1 0 0 0
........................................................................................................................................................TGCACAAGTTGTCGAGCCG................................................................................ 19 0 12 0.08 1 1 0 0 0
........................................................................................................................................................TGCACAAATTGTCGAGCCG................................................................................ 19 1 12 0.08 1 1 0 0 0
.............................................................................................................................................GAGACCGCGCCTGCACAAGT.......................................................................................... 20 0 13 0.08 1 1 0 0 0
GACCTACGAGTTTTGCAAAAC...................................................................................................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0
......................................................................................................................................................................................................................................AAGATAAGCAACTGACTCAC. 20 0 18 0.06 1 0 0 1 0
...................................................................................................................................................................................................................................ATAAAGATAAGCAACTGACTC... 21 0 18 0.06 1 1 0 0 0
.............................................................................................................................................................................................................................CCCTGAATAAAGATAAGCAAC......... 21 0 18 0.06 1 1 0 0 0
................................................................................................CTCACCGCCTCGGACGCAAC....................................................................................................................................... 20 3 19 0.05 1 0 1 0 0
...........................................................................................................................................CGGCGACCGCGCCTCAACAA............................................................................................ 20 3 20 0.05 1 0 0 0 1
..........................................................................................................................GCCAATGGGCGTGCGGTCA.............................................................................................................. 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_685:9043-9293 - dpe_1990 CTGGATGCTCAAAACGTTTTGAATGTAAATATCTTTAGACTGGCAAAGAAGTAACCTCTAAAGTATCTGCCCCTTGGGGACCTACAGGCCAGCTTGGAGTGGAGGAGAATGCGTTGGTGTTCCGGTTATCCGCAGGCCAGCCTCTGGCGCGGACGTGTTCAACAGCTCGGCGAGCG---------------ACTGATTTGCTGCCGCAAATGACCAGACTATTGTGTAGTTTTTTTGGGACTTATTTCTATTCGTTGACTGAGTGA
dp5 Unknown_group_774:4224-4456 - CTGGATGCTCAAAACGTTTTGAATGTAAGTATCTTTAGACTGGCAAAGAAGTAACCTCTAAAGTATCTGCCCCTTGGGGACCTGCAGGCCAGCTTGGAGTGGAGGAGAATACGTTGGTGTTCCGGTTATCCGCAGGCCAGCCTCTGGCGCGGACGTGTGCAACAGCTTGGCGAGCGAGTGTGTGCCATCCGACTGATTTGTTGCCGCAAATGACCAGACTATTGTGTAGTTTT---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTGGATGCTCAAAACGTTTTGAATGTAAATATCTTTAGACTGGCAAAGAAGTAACCTCTAAAGTATCTGCCCCTTGGGGACCTACAGGCCAGCTTGGAGTGGAGGAGAATGCGTTGGTGTTCCGGTTATCCGCAGGCCAGCCTCTGGCGCGGACGTGTTCAACAGCTCGGCGAGCG---------------ACTGATTTGCTGCCGCAAATGACCAGACTATTGTGTAGTTTTTTTGGGACTTATTTCTATTCGTTGACTGAGTGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................GAGAATGCGTTGGTGTTCC...............................................................................................................................................1951.407000007
..................................................................................................GTGGAGGAGAATGCGTTGG.....................................................................................................................................................1950.804000004
............................................................................................................................................................................................................................ATTGTGTAGTTTTTTTGGG...........................1950.804000004
.............................................................................................TTGGAGTGGAGGAGAATGCGTT.......................................................................................................................................................2250.402000002
..............................................................................................TGGAGTGGAGGAGAATGCGTT.......................................................................................................................................................2150.402000002
.....................................................................................................GAGGAGAATGCGTTGGTGTT.................................................................................................................................................2050.402000002
..........................................................................................................GAATGCGTTGGTGTTCCGG.............................................................................................................................................1970.292000002
....................................................................................................................................................................................................................................................TTTCTATTCGTTGACTGAGTG.21180.285000005
......................................................................................................AGGAGAATGCGTTGGTGTT.................................................................................................................................................1950.201000001
..........................................................................................................................................................................................................................CTATTGTGTAGTTTTTTTGGG...........................2150.201000001
.........................................................................................................AGAATGCGTTGGTGTTCCG..............................................................................................................................................1950.201000001
.......................................................................................................GGAGAATGCGTTGGTGTTCC...............................................................................................................................................2050.201000001
.....................................................................................................GAGGAGAATGCGTTGGTGTTC................................................................................................................................................2150.201000001
.......................................................................................................GGAGAATGCGTTGGTGTTC................................................................................................................................................1950.201000001
......................................................................................................AGGAGAATGCGTTGGTGTTCC...............................................................................................................................................2150.201000001
..............................................................................................TGGAGTGGAGGAGAATGCGTTGGT....................................................................................................................................................2450.201000001
.................................................................................................AGTGGAGGAGAATGCGTTGG.....................................................................................................................................................2050.201000001
..............................................................................................TGGAGTGGAGGAGAATGCGTTTTC....................................................................................................................................................2450.201000001
................................................................................................................................................................................................................AATGACCAGACTATTGTGTAG.....................................21120.172000002
..........................................................................................................GAATGCGTTGGTGTTCCGGTT...........................................................................................................................................2170.141000001
..................................TTAGACTGGCAAAGAAGTAAC...................................................................................................................................................................................................................2170.141000001
...........................................................................................GCTTGGAGTGGAGGAGAATGCG.........................................................................................................................................................2280.131000001
..............................................................................................TGGAGTGGAGGAGAATGCG.........................................................................................................................................................1980.131000001
............................................................................................CTTGGAGTGGAGGAGAATG...........................................................................................................................................................1990.111000001
...........................................................................................GCTTGGAGTGGAGGAGAATG...........................................................................................................................................................2090.111000001
...........................................................AAAGTATCTGCCCCTTGGGGAA.........................................................................................................................................................................................2290.111000001
......................................................................................GGCCAGCTTGGAGTGGAGG.................................................................................................................................................................1990.111000001
............................................................................................CTTGGAGTGGAGGAGAATGC..........................................................................................................................................................2090.111000001
..................................................................................................................................................GCGCGGACGTGTTCAACAGC....................................................................................................20120.081000001
.......................................................................................................................................................GACGTGTTCAACAGCTCGGC...............................................................................................20120.081010000
.........................................................................................................................................................CGTGTTCAACAGCTCGGCGAT............................................................................................21120.081000001
.......................................................................................................................................................................................................................................................CTATTCGTTGACTGAGTGA19180.061000001
................................................................................................................................................................................................................................................CTTATTTCTATTCGTTGACTGAGT..24180.061010000
......................................................................................................................................................................................................................................................TCTATTCGTTGACTGAGTG.19180.061000001
dp5
CTGGATGCTCAAAACGTTTTGAATGTAAGTATCTTTAGACTGGCAAAGAAGTAACCTCTAAAGTATCTGCCCCTTGGGGACCTGCAGGCCAGCTTGGAGTGGAGGAGAATACGTTGGTGTTCCGGTTATCCGCAGGCCAGCCTCTGGCGCGGACGTGTGCAACAGCTTGGCGAGCGAGTGTGTGCCATCCGACTGATTTGTTGCCGCAAATGACCAGACTATTGTGTAGTTTT---------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................CGAGCGAGTGTGTGCCATCCG...........................................................................2111.0010000001000
.........CAAAACGTTTTGAATGTAAG.............................................................................................................................................................................................................................................2050.4020000000020
.TGGATGCTCAAAACGTTTTGAATG.................................................................................................................................................................................................................................................2460.1710000001000
.........CAAAACGTTTTGAATGTAAA.............................................................................................................................................................................................................................................2060.1710000000010

Generated: 06/08/2015 at 05:01 PM