ID:

dpe_1949

 Coordinate:

scaffold_61:196924-197074 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dper_GLEANR_17977:1]; CDS [Dper\GL16329-cds]; intron [Dper\GL16329-in]

No Repeatable elements found

mature
star
  1. scaffold_10:2395396-2395414 +
  2. scaffold_47:373117-373135 -
  3. scaffold_47:517750-517768 -
  4. scaffold_1:8855479-8855497 +
  5. scaffold_6:4634915-4634933 -
  6. scaffold_3:2288111-2288129 +
  7. scaffold_4:1119721-1119739 -
  8. scaffold_153:101950-101968 -
  9. scaffold_5:1402849-1402867 +
  10. scaffold_7:3034066-3034084 +
  11. scaffold_11:2168919-2168937 +
  12. scaffold_13:976187-976205 +
  13. dpe_1949  scaffold_61:197016-197034 +
  14. scaffold_15:1895061-1895079 +
  15. scaffold_23:589906-589924 -
  16. scaffold_34:725460-725478 -
  17. scaffold_37:305427-305445 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCAGCAGCAGCAGAAGCAGAAGCAGCAGTCACCCACCATCGATGATAAGGGATTGCAGCACTCGGAAGATACAAAGGACACAGATACAGATACGCAGAGCATTCGAGACACAGCAGAATCTGAGCTTGAGGCTGAAGCTGAGGAGGAGGAGGAGGAGGGAGGACGCAGCAGTAGACGCAGAAGTCGAGGCAGTCATCATGGGTAAAGATAGACGAGATCCCGTTTTGCATACCGTTCGTCGAGTGCCGTC
**********************************************************************************************************************************************..........................((....(((......)))...)).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V057
head
...........................................................................................................................................................................GTAGACGCAGAAGTCGAGGCA........................................................... 21 0 1 2.00 2 0 2 0 0
............................................................................GGACACTGAGACAGCTACGCA.......................................................................................................................................................... 21 3 6 2.00 12 12 0 0 0
.............................................................................GACACTGTTACAGCTACGCA.......................................................................................................................................................... 20 3 6 0.50 3 3 0 0 0
...........CAGAAGCAGAAGCAGCAGT............................................................................................................................................................................................................................. 19 0 3 0.33 1 1 0 0 0
............................................................................GGACACTGAGACAGCTACGCAG......................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0
............................................................................GGACACTGTTACAGCTACGCA.......................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0
............................................................................GGACACTGAGACAGCTACGC........................................................................................................................................................... 20 3 11 0.27 3 3 0 0 0
.............................................................................GACACTGAGACAGCTACGCAG......................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0
..................................................................................................................................GACTGAAGCTGTGGAGGAT...................................................................................................... 19 3 20 0.10 2 0 0 2 0
....................................................................................................................GAATCTGAGGTTGTTGCTGAA.................................................................................................................. 21 3 10 0.10 1 1 0 0 0
..................................................................................................................................GACTGAAGCTGTGGAGGA....................................................................................................... 18 2 11 0.09 1 0 0 1 0
..................................................................................................................................................GAGGAGGAGGAGGTAGGACC..................................................................................... 20 2 14 0.07 1 0 0 0 1
..............................................................................................................................................GGAGGAGGAGGAGGAGGGA.......................................................................................... 19 0 17 0.06 1 1 0 0 0
.............................................................................................................................................................................................................................CGTATTGCTTACCGTTCGA........... 19 3 18 0.06 1 0 0 0 1
........CAGCAGAAGCAGAAGCAGCAG.............................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCGTCGTCGTCGTCTTCGTCTTCGTCGTCAGTGGGTGGTAGCTACTATTCCCTAACGTCGTGAGCCTTCTATGTTTCCTGTGTCTATGTCTATGCGTCTCGTAAGCTCTGTGTCGTCTTAGACTCGAACTCCGACTTCGACTCCTCCTCCTCCTCCTCCCTCCTGCGTCGTCATCTGCGTCTTCAGCTCCGTCAGTAGTACCCATTTCTATCTGCTCTAGGGCAAAACGTATGGCAAGCAGCTCACGGCAG
***********************************************************..........................((....(((......)))...)).********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M021
embryo
 M042
female body
....................................................................................................................................GACTTCGACTACTCATTCTCC.................................................................................................. 21 3 6 0.17 1 1 0 0
...............TCGTTTTCGTGGTCAGTGGGC....................................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0
.....GTCGTCGTCTTCGTCTTCG................................................................................................................................................................................................................................... 19 0 20 0.10 2 0 2 0
...............................................................................................................................................................................................ACATTAGTAGCCATTTCTA......................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_61:196874-197124 + dpe_1949 AGCAGCAGCAGCAGAAGCAGA--A------------------------------------------GCAG---------CAGTCAC---C---------------CACCA--------------------TCGATGATAA-------------------GGGATTG-----------------CAGCACTCGGAAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGGACACAGATA--------------------------------------CAGATACGCAGAGCATTCGAGACA-CAG------------CAGA----------------------------------------------------------------------ATCTGAGCTT----------------GAGGCTG-AAGCTGAGGAGGAGGAGGA--------------------------------------------------------GG-AG--------GGAGGACGCAGCAGTAGACGC---------AGAAGT------------CGAGGCAG-TCATCATGGGTAAAGAT-AGACGAGATCCCGTTTTGCATA-CCGTTCGTCGAGTGCCGTC
dp5 XR_group6:9916862-9917095 + AGCAGAAGCAGCAGTCAC-----------------------------------------------------------------------C---------------CACCA--------------------TCGATGATAA-------------------GGGATTG-----------------CAGCACTCGGAAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGGACACAGATA--------------------------------------CAGATACGCAGAGCATTCGAGACA-CAG------------CAGA----------------------------------------------------------------------ATCTGAGCTT----------------GAGGCAG-AAGCTGAGGAGGAGGAG----------------------------------------------------------GAGGA--------GGAGGACGCAGCAGTAGACGC---------AGAAGT------------CGAGGCAG-TCATCATGG-TAAAGAT-AGACGAGACCCCGTTTTACGTA-CCGTTCGTCGAGTGCCGTT
droWil2 scf2_1100000004762:1177067-1177337 + AACAGCTTCAGCTTCAGCATC--A------------------------------------------GCTT---------CAGCTTC---A---------------C---GACA--------------TAATCGATGATAA-------------------CGACG--AG--------------------CTC-----------------------TTAGAC---AAAGACATACAGGAATCACAAGTGCAGCAGCAGCAGC---------------AGCAGCAGCA------------------GACC-ACA--A----------------AGAGCGACAGTAGATCCAGGACTAGAACCAGAAATACAAACGAAACGGAAT--------------------------------------CAGTTACAAGAAACGAACTATTTA-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAGGAGCA--AGAAGACGCAGAAGTTGACGC---------GGAAGT------------CGAGGCTG-TCATTATGG-TAAAAATCAAAAGAAA----------------------------------
droVir3 scaffold_13049:20458661-20458847 + AACAACAGCAGCAGCAGCGGC--A------------------------------------------GCAG---------CAGCAGC---A---------------GGACG--------------------ACGACAATAA-------------------TATTG--CA--------------------GAT-----------------------CTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAGGAGGA---------GGAGCAGCAGCAACAGCAGGCGGGGGAC-----------------------------------------------------------------------GACGGGGAAGAGGAAGAGGAC--------GAGGAAGAAGAGGACGA--------CGAGGAGGAGCAGGACGAGGTCGAGGAAGAAGAAGC------------GGAGGAGG---------T---------------------------------------------------
droMoj3 scaffold_6680:6627234-6627430 - -GCAGCAACAGCTCAAGAATT--T------------------------------------------G------------------------C---ACAAAGAACAC---TTTG--------------ACATCGATGACAACGCACTAGCAGCGACAGAGACAGAGG-----------------C--------------------------------A---------------------------GAGCAGCAGCAGCAGC---------------AGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAACAGCAGAGAGATAAT-----------------------------------------------------------------------TC-----------------------GAGCAGAGCCACA---GCAGA--------GGAGGACGCAGCAGTTGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------
droGri2 scaffold_15074:5980298-5980500 - AGCAGCAGCAGCAGCAGCAGAGCA------------------------------------------GCAG---------CAGA----TCGCGA---CAACGATCAGAGG-----------------------------------------------------------------------------------------CACTGAATACAGAGCCACAGACACA----------------------------------------------GCCA-T---------------------------AGCCATAGC-------------------CAC----AGCAAGAGTCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC-AGGGCCAAGA----------CAA-CGACAACGACAGC-----AGCA-----------------------------------------------------GCGGC--------GGCGGCATCAGCAGCAGCAGC---------AGCAGC------------AGCAGCAG-CTACAGCAA-TGAAAAT-TGCTGAGA----------------------------------
droAna3 scaffold_13266:10910354-10910594 + AGCATCAGCAGCAGAGGCAGA--G------------------------------------------GCAG---------CCACCGA-----------------------------------------------------------------------------------AGCGGCGTT-------------------------------------------------------------------------------G--ATGGCCGAAGC----GGTGGCTGTA------------------GCT-TACC-------------------TGA----GCGACGAGGAA----------------------------------------------------------------------------------------------G-AGGAAGAGCCCGAGACTGGGGGAGAGCCTGATCCGGACGTTGAGGAAGATGCAGTGGA-------------------------------ATTCGCTGTC----------------GAAGAC------------------------------------GCTGGCGAGGATCAGGATGAA--------GGGGCTCCAGAGGACGA--------GGAGGAAGCCGCCGGCGAAGC---------TGGCGA------------GGAAGACG-CTG-TAAGT---------------------------------------------------
droBip1 scf7180000396384:24026-24191 - AGCAGCAACATCAGCAGCAGC--A------------------------------------------GCAA---------CAACACT---C---------------G--------------------------------------------------------------GAGCAACTGCAGCA--------------------------GGAG--------------------------------------------TA--ACT------------------------AGCGATACT-GCAGCAGGTCTAGC-------------------GGG----CGGAGGAGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGAA----------------GAGGCAG-AGACAGGGGAGTAGGAGGA-----------G--------------------------------------------GTGGT--------GGAGGAGGCGGCGGAGGAGG----------AGGAGT------------TGCAGCA--------------------------------------------------------------
droKik1 scf7180000302486:2317673-2317878 - TTCCGCATTAATCGTATCCGCATCGCAGCCGCACGAGGATTTCGCCGAAACGAGCGAGGATAT------------------------TTGTG---ACAAAGAGCCGAGGA--------------------CCGATGATAA-------------------CGGGG--GA--------------------GTC-----------------------CTAGACACAGAGGACCTTCACACGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG---------ACGATAGCTCAGCAGCAGCAACA--------------------------------------------------------GTCGA--------GGAGGACGCAGCCAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------
droFic1 scf7180000453342:466821-467010 - AGCAGCAGCAGCAGAAGAAGC--A------------------------------------------GCAA---------CAACCGC-----------------------------------------------------------------------------------ATCAGCAACAGCAACAGCAACCCGAAGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGAAATAGACA--------------------------------------CAGAGCCAGAGAGC---------G-AAACGGAGACCGAGACGGA----------------------------------------------------------------------AACGGAGACC----------------GAGACGG-AGACGGAGAGAGA-----G--------------------------------------------------------ACCGA--------GAGGGAGAGGGAGACAGAAAC---GGAAGCGGAAAC------------AGAAACCG---------A---------------------------------------------------
droEle1 scf7180000490564:530855-531043 - AGCAGCTGCGGCAGAACGAGG-----------------GGGTTGCCGAGCCGAGCGCGGAAAATTCC---GATCAGGAGCACCAAATAAGTC---ACAAAGAGCCGAACAACG--------------GTATAGATGATAA-------------------GGAAA--CG--------------------CTC-----------------------CTAGAG---CAGGAGCTTCACGAATCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCAATCGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------
droRho1 scf7180000778255:59515-59679 - AGGGG-----------------------------------GTCGCCGAACCGAGTGCGGAAAATTCC---GACCAGGAGCACCAAATAAGTC---ACAAAGAGCCGAACA--------------------TCGATGATAA-------------------GGAAG--CG--------------------CTC-----------------------CTAGAG---CAGGACCTTAACAAATCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCTATCGACGC---------GGAAGT------------CGAAGCAG-TCATCATGG---------------------------------------------------
droBia1 scf7180000302126:3411896-3412106 - AGCAGCAGCAGCAGCAGCATC--A------------------------------------------GCAGGGCAACGGGCAGTGACCTCACGCCCACGGACCTG-C---GACATGTGCTGCCCAGCAGCAACCACGATCA-------------------GCAGC--AG--------------------CAG-----------------------CA------------------------------------ACATCAGC---------------AGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAACAGGAGCCCGCTGCCTAC-----------------------------------------------------------------GATGAC------------GAG-----------------------GACGA---GGA--GGAGGACGAGGACGACGAGGA---------TGAGGA------------CGAGGTGG-CCAGCA------------------------------------------------------
droTak1 scf7180000415741:30333-30521 + AGCAGCAGCAGCTAAACGAGG-----------------GGGTCGCCGAGCCGAGAGCGGAAAATTCC---GATCAGGAGCAGCAAATAATAC---ACAAAGAGCCGAACATCG--------------ATATCGATGATAA-------------------GGAAG--CG--------------------CTC-----------------------CTAGAG---CAGGACCTTCGGAAACTAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCAACCGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------
droEug1 scf7180000409711:1599910-1600041 - AGGAGCAACAAA--------------------------------------------------------------------------TAAGTC---ACAAAGAGCCGAAGA-----------------ACATCGATGATAA-------------------GGATA--CG--------------------CTC-----------------------CTAGAC---CAGGAACTTCAGCAATCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTTGA--------GGAGGACGCAGCAAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------
dm3 chr3L:9743944-9744145 - GCCGAGTGCGGAAAAT------------------------------------------------TCG---GATCAGGAGCAGGCACTTTGTGACTACAAAGAGCCGAACA--------------------TTGATGATAA-------------------GGAAG--CG--------------------CTT-----------------------ATAGAG---CAGGACCTTCACAAATCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCTAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG-TACCACA-ATAAAATATACAATTTTGAATAGTCGTTCG--GAGTTTCGTT
droSim2 3r:7028489-7028700 + AGCAGCAGCAGCAGCAGCAAC--A------------------------------------------GCAG---------CAGTCAC---C---------------CATCA--------------------GC-AGCATGA-------------------GCAACGG-----------------CAACATGCGGCAGCA------------------------------------------------------ACAGCAGC---------------AGCAGCAGCAACATCGACGCCAGCAGCAGCT-----------------------------------------------------------------------------------TCCGCCTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAC------------GATCATCATCGATGAGAGCGACA---A-TGA---GCTGGAGGAGGAGCAGCAGATGAGGC---------TGAGCTTTGAGCGGTACATGGAGCAG-CTGAAGCAG---------------------------------------------------
droSec2 scaffold_0:1977542-1977707 - AGCAGGCACT-----------------------------------------------------------------------------TTGTGACTACAAAGAGCCGAACA--------------------TCGATGATAA-------------------GGAAG--CA--------------------CTC-----------------------CTCGAG---CAGGACCTTCACAAATCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCCAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG-TACCGCA-AGAAAATATACAATTTTGAATAGCCATTCG------------
droYak3 2R:15025622-15025833 + AGCAACAGCAGCAACAGCAAC--A------------------------------------------GCAG---------CAAGCGC---T---------------G--------------------------------------------------------------GAGTTGCAACAGCAACAAG-----------CAATTAATGCAAATGCGGAGA-GCA----------------------------------------------GCCGGC---------------------------AGCCAAATCGAGAAGGAGGCAGGCCAAGCAC----ATCGAGA-TCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-AATGCCTGGAGAATGT----CGG-----AGCTGCAGC-----AGGAGCAGAAGCA--------------------------------------------GCAGC--------AGAAGCAGCAGCAGTAGAAGC---------AGCAAC------------AGCAGCAG---------T---------------------------------------------------
droEre2 scaffold_4929:3383204-3383445 - AGCAGCAACAGCAGCAGCAGC--A------------------------------------------GCAA---------CAACAGC-----------------------------------------------------------------------------------AACAACAGCAGCA----------------------------------------------------------------------ACAGCAGC---------------ATCCGCAGCA------------------ACACTACC-------------------AGC----T---------------------------AAACAGGAAACAGTTGCAGTTGCTGCCGCCTGTGTTGCTCCTCGCAAATTGGCAAAAATTCAGAAAAT---------TCCGA------------AGGA----------------------------------------------------------------------ACCCGAG-------------------GAGCTGA-AAGCCAAGAAAAAGGCAAA--------------------------------GTGT-----------------------GA--------GGCAGCAGCAGCAGCAGTAGC---------AGCAGC------------GGCGGCGACTCATTACGA-AAAAA---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGCAGCAGCAGCAGAAGCAGA--A------------------------------------------GCAG---------CAGTCAC---C---------------CACCA--------------------TCGATGATAA-------------------GGGATTG-----------------CAGCACTCGGAAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGGACACAGATA--------------------------------------CAGATACGCAGAGCATTCGAGACA-CAG------------CAGA----------------------------------------------------------------------ATCTGAGCTT----------------GAGGCTG-AAGCTGAGGAGGAGGAGGA--------------------------------------------------------GG-AG--------GGAGGACGCAGCAGTAGACGC---------AGAAGT------------CGAGGCAG-TCATCATGGGTAAAGAT-AGACGAGATCCCGTTTTGCATA-CCGTTCGTCGAGTGCCGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACGC---------AGAAGT------------CGAGGCA..............................................................2112.002200000
...........CAGAAGCAGA--A------------------------------------------GCAG---------CAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGAGGA--------------------------------------------------------GG-AG--------GGA..................................................................................................................19170.061010000
........CAGCAGAAGCAGA--A------------------------------------------GCAG---------CAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
dp5
AGCAGAAGCAGCAGTCAC-----------------------------------------------------------------------C---------------CACCA--------------------TCGATGATAA-------------------GGGATTG-----------------CAGCACTCGGAAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGGACACAGATA--------------------------------------CAGATACGCAGAGCATTCGAGACA-CAG------------CAGA----------------------------------------------------------------------ATCTGAGCTT----------------GAGGCAG-AAGCTGAGGAGGAGGAG----------------------------------------------------------GAGGA--------GGAGGACGCAGCAGTAGACGC---------AGAAGT------------CGAGGCAG-TCATCATGG-TAAAGAT-AGACGAGACCCCGTTTTACGTA-CCGTTCGTCGAGTGCCGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGCAGCAGTAGACGC---------AG.....................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GACA-CAG------------CAGA----------------------------------------------------------------------ATCTGAGCTT----------------GAGG.................................................................................................................................................................................................................2511.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAGA----------------------------------------------------------------------ATCTGAGCTT----------------GA...................................................................................................................................................................................................................1811.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAG----------------------------------------------------------GAGGA--------GGAGGAC..............................................................................................................2490.2220010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGAGGAG----------------------------------------------------------GAGGA--------G....................................................................................................................19200.1020000011000
droWil2
AACAGCTTCAGCTTCAGCATC--A------------------------------------------GCTT---------CAGCTTC---A---------------C---GACA--------------TAATCGATGATAA-------------------CGACG--AG--------------------CTC-----------------------TTAGAC---AAAGACATACAGGAATCACAAGTGCAGCAGCAGCAGC---------------AGCAGCAGCA------------------GACC-ACA--A----------------AGAGCGACAGTAGATCCAGGACTAGAACCAGAAATACAAACGAAACGGAAT--------------------------------------CAGTTACAAGAAACGAACTATTTA-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAGGAGCA--AGAAGACGCAGAAGTTGACGC---------GGAAGT------------CGAGGCTG-TCATTATGG-TAAAAATCAAAAGAAA----------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGACGC---------GGAAGT------------CGAGGCTG-TC..........................................................2611.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAGGAGCA--AGAAGG...............................................................................................................1820.50100100
......................................................................................................................................................................................................................................................GCAGCAGCAGCAGC---------------AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.20400040
droVir3
AACAACAGCAGCAGCAGCGGC--A------------------------------------------GCAG---------CAGCAGC---A---------------GGACG--------------------ACGACAATAA-------------------TATTG--CA--------------------GAT-----------------------CTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGAGGAGGA---------GGAGCAGCAGCAACAGCAGGCGGGGGAC-----------------------------------------------------------------------GACGGGGAAGAGGAAGAGGAC--------GAGGAAGAAGAGGACGA--------CGAGGAGGAGCAGGACGAGGTCGAGGAAGAAGAAGC------------GGAGGAGG---------T---------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........CAGCAGCAGCGGC--A------------------------------------------GCAG---------CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102002000000000000000000000000000000000000000000000000000000000000
.......GCAGCAGCAGCGGC--A------------------------------------------GCAG---------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAGGCG........................................................................................................................................................................................................................................................18130.081000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGA---------GGAGCAGCAGC...................................................................................................................................................................................................................................................................18140.071000000000000000000000000000000001000000000000000000000000000000
............AGCAGCGGC--A------------------------------------------GCAG---------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGGCGT.......................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
AACAACAGCAGCAGCAGCGGC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
.........AGCAGCAGCGGC--A------------------------------------------GCAG---------CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000001000000000000000000000000000000000000000000000000000
.........AGCAGCAGCGGC--A------------------------------------------GCAG---------CAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GGAGCAGCAGCAACAGCA............................................................................................................................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
..............CAGCGGC--A------------------------------------------GCAG---------CAGCAGC---A---------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
.......GCAGCAGCAGCGGC--A------------------------------------------GCAG---------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GGAGCAGCAGCAACAGC.............................................................................................................................................................................................................................................................18200.051000000000001000000000000000000000000000000000000000000000000000
.....CAGCAGCAGCAGCGGC--A------------------------------------------GCAG---------CAGCAGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000000000000000000000000000000010000
............AGCAGCGGC--A------------------------------------------GCAG---------CAGCAGC---A---------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
-GCAGCAACAGCTCAAGAATT--T------------------------------------------G------------------------C---ACAAAGAACAC---TTTG--------------ACATCGATGACAACGCACTAGCAGCGACAGAGACAGAGG-----------------C--------------------------------A---------------------------GAGCAGCAGCAGCAGC---------------AGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAACAGCAGAGAGATAAT-----------------------------------------------------------------------TC-----------------------GAGCAGAGCCACA---GCAGA--------GGAGGACGCAGCAGTTGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................ACGCACTAGCAGCGACAGAGACAGAGG-----------------C--------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCACA---GCAGA--------GGAGGACGCAGC.........................................................................................................2511.001000100
............................................................................................................................................................GAGACAGAGG-----------------C--------------------------------A---------------------------GAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCAGAGA........................................................................................................................................................................................................................................................2160.171100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAGCAGAGAA.......................................................................................................................................................................................................................................................20200.051100000
droGri2
AGCAGCAGCAGCAGCAGCAGAGCA------------------------------------------GCAG---------CAGA----TCGCGA---CAACGATCAGAGG-----------------------------------------------------------------------------------------CACTGAATACAGAGCCACAGACACA----------------------------------------------GCCA-T---------------------------AGCCATAGC-------------------CAC----AGCAAGAGTCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC-AGGGCCAAGA----------CAA-CGACAACGACAGC-----AGCA-----------------------------------------------------GCGGC--------GGCGGCATCAGCAGCAGCAGC---------AGCAGC------------AGCAGCAG-CTACAGCAA-TGAAAAT-TGCTGAGA----------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....CAGCAGCAGCAGCAGAGCA------------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.20110
droAna3
AGCATCAGCAGCAGAGGCAGA--G------------------------------------------GCAG---------CCACCGA-----------------------------------------------------------------------------------AGCGGCGTT-------------------------------------------------------------------------------G--ATGGCCGAAGC----GGTGGCTGTA------------------GCT-TACC-------------------TGA----GCGACGAGGAA----------------------------------------------------------------------------------------------G-AGGAAGAGCCCGAGACTGGGGGAGAGCCTGATCCGGACGTTGAGGAAGATGCAGTGGA-------------------------------ATTCGCTGTC----------------GAAGAC------------------------------------GCTGGCGAGGATCAGGATGAA--------GGGGCTCCAGAGGACGA--------GGAGGAAGCCGCCGGCGAAGC---------TGGCGA------------GGAAGACG-CTG-TAAGT---------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................GGCGTT-------------------------------------------------------------------------------G--ATGGCCGAAGC----GGTGGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGCAGTGGA-------------------------------ATTCGCT........................................................................................................................................................................................................................................1911.001000010
....................................................................................GA-----------------------------------------------------------------------------------AGCGGCGTT-------------------------------------------------------------------------------G--ATGGCCGAAGC----GGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGA--------GGAGGAAGCCGC.........................................................................................................2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGAAGATGCAGTGGA-------------------------------ATT............................................................................................................................................................................................................................................2311.001000001
.........................................................................................................................................................................................................................................................................................TGTA------------------GCT-TACC-------------------TGA----GCGACGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....TCAGCAGCAGAGGCAGA--G------------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCTGTC----------------GAAGAC------------------------------------GCTGGC.....................................................................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCTCCAGAGGACGA--------GGAG.................................................................................................................2111.001001000
.................................................................................................................................................................................................................................................................G--ATGGCCGAAGC----GGTGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331010000
droBip1
AGCAGCAACATCAGCAGCAGC--A------------------------------------------GCAA---------CAACACT---C---------------G--------------------------------------------------------------GAGCAACTGCAGCA--------------------------GGAG--------------------------------------------TA--ACT------------------------AGCGATACT-GCAGCAGGTCTAGC-------------------GGG----CGGAGGAGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGAA----------------GAGGCAG-AGACAGGGGAGTAGGAGGA-----------G--------------------------------------------GTGGT--------GGAGGAGGCGGCGGAGGAGG----------AGGAGT------------TGCAGCA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTCCGCATTAATCGTATCCGCATCGCAGCCGCACGAGGATTTCGCCGAAACGAGCGAGGATAT------------------------TTGTG---ACAAAGAGCCGAGGA--------------------CCGATGATAA-------------------CGGGG--GA--------------------GTC-----------------------CTAGACACAGAGGACCTTCACACGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG---------ACGATAGCTCAGCAGCAGCAACA--------------------------------------------------------GTCGA--------GGAGGACGCAGCCAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAGCAGCAGAAGAAGC--A------------------------------------------GCAA---------CAACCGC-----------------------------------------------------------------------------------ATCAGCAACAGCAACAGCAACCCGAAGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGAAATAGACA--------------------------------------CAGAGCCAGAGAGC---------G-AAACGGAGACCGAGACGGA----------------------------------------------------------------------AACGGAGACC----------------GAGACGG-AGACGGAGAGAGA-----G--------------------------------------------------------ACCGA--------GAGGGAGAGGGAGACAGAAAC---GGAAGCGGAAAC------------AGAAACCG---------A---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCAGCTGCGGCAGAACGAGG-----------------GGGTTGCCGAGCCGAGCGCGGAAAATTCC---GATCAGGAGCACCAAATAAGTC---ACAAAGAGCCGAACAACG--------------GTATAGATGATAA-------------------GGAAA--CG--------------------CTC-----------------------CTAGAG---CAGGAGCTTCACGAATCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCAATCGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGGGG-----------------------------------GTCGCCGAACCGAGTGCGGAAAATTCC---GACCAGGAGCACCAAATAAGTC---ACAAAGAGCCGAACA--------------------TCGATGATAA-------------------GGAAG--CG--------------------CTC-----------------------CTAGAG---CAGGACCTTAACAAATCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCTATCGACGC---------GGAAGT------------CGAAGCAG-TCATCATGG---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCAGCAGCAGCAGCATC--A------------------------------------------GCAGGGCAACGGGCAGTGACCTCACGCCCACGGACCTG-C---GACATGTGCTGCCCAGCAGCAACCACGATCA-------------------GCAGC--AG--------------------CAG-----------------------CA------------------------------------ACATCAGC---------------AGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAACAGGAGCCCGCTGCCTAC-----------------------------------------------------------------GATGAC------------GAG-----------------------GACGA---GGA--GGAGGACGAGGACGACGAGGA---------TGAGGA------------CGAGGTGG-CCAGCA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGCAGCAGCAGCTAAACGAGG-----------------GGGTCGCCGAGCCGAGAGCGGAAAATTCC---GATCAGGAGCAGCAAATAATAC---ACAAAGAGCCGAACATCG--------------ATATCGATGATAA-------------------GGAAG--CG--------------------CTC-----------------------CTAGAG---CAGGACCTTCGGAAACTAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCAACCGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGGAGCAACAAA--------------------------------------------------------------------------TAAGTC---ACAAAGAGCCGAAGA-----------------ACATCGATGATAA-------------------GGATA--CG--------------------CTC-----------------------CTAGAC---CAGGAACTTCAGCAATCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTTGA--------GGAGGACGCAGCAAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GCCGAGTGCGGAAAAT------------------------------------------------TCG---GATCAGGAGCAGGCACTTTGTGACTACAAAGAGCCGAACA--------------------TTGATGATAA-------------------GGAAG--CG--------------------CTT-----------------------ATAGAG---CAGGACCTTCACAAATCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCTAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG-TACCACA-ATAAAATATACAATTTTGAATAGTCGTTCG--GAGTTTCGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................AG---CAGGACCTTCACAAATCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AGGAGCAGGCACTTTGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
..................................................................................................................................................................AG--CG--------------------CTT-----------------------ATAGAG---CAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATGG-TACCACA-ATAAAATATA................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACAATTTTGAATAGTC.................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GCCGAACA--------------------TTGATGATAA-------------------GTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.............AAT------------------------------------------------TCG---GATCAGGAGCAGGCACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ACA--------------------TTGATGATAA-------------------GGAAG--CG--------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
droSim2
AGCAGCAGCAGCAGCAGCAAC--A------------------------------------------GCAG---------CAGTCAC---C---------------CATCA--------------------GC-AGCATGA-------------------GCAACGG-----------------CAACATGCGGCAGCA------------------------------------------------------ACAGCAGC---------------AGCAGCAGCAACATCGACGCCAGCAGCAGCT-----------------------------------------------------------------------------------TCCGCCTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAC------------GATCATCATCGATGAGAGCGACA---A-TGA---GCTGGAGGAGGAGCAGCAGATGAGGC---------TGAGCTTTGAGCGGTACATGGAGCAG-CTGAAGCAG---------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGGTACATGGAGCAG-CT..........................................................2111.00100100000000000000
.....................................................................................................................................................................................................A------------------------------------------------------ACAGCAGC---------------AGCAGCAGCAACATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07100000000001000000
AGCAGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
............AGCAGCAAC--A------------------------------------------GCAG---------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000010000000000
droSec2
AGCAGGCACT-----------------------------------------------------------------------------TTGTGACTACAAAGAGCCGAACA--------------------TCGATGATAA-------------------GGAAG--CA--------------------CTC-----------------------CTCGAG---CAGGACCTTCACAAATCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------GTCGA--------GGAGGACGCAGCCAACGACGC---------GGAAGT------------CGAGGCAG-TCATCATGG-TACCGCA-AGAAAATATACAATTTTGAATAGCCATTCG------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGCAACAGCAGCAACAGCAAC--A------------------------------------------GCAG---------CAAGCGC---T---------------G--------------------------------------------------------------GAGTTGCAACAGCAACAAG-----------CAATTAATGCAAATGCGGAGA-GCA----------------------------------------------GCCGGC---------------------------AGCCAAATCGAGAAGGAGGCAGGCCAAGCAC----ATCGAGA-TCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-AATGCCTGGAGAATGT----CGG-----AGCTGCAGC-----AGGAGCAGAAGCA--------------------------------------------GCAGC--------AGAAGCAGCAGCAGTAGAAGC---------AGCAAC------------AGCAGCAG---------T---------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC--------AGAAGCAGCAGCAGTAG....................................................................................................2130.33100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------------------------GCAGC--------AGAAGCAGCAGCAGT......................................................................................................2240.25101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------------------------------------GCAGC--------AGAAGCAGCAG..........................................................................................................20200.20401001110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------------------------------------GCAGC--------AGAAGCAGCAGCAG.......................................................................................................23140.07100001000000
......AGCAGCAACAGCAAC--A------------------------------------------GCAG---------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
droEre2
AGCAGCAACAGCAGCAGCAGC--A------------------------------------------GCAA---------CAACAGC-----------------------------------------------------------------------------------AACAACAGCAGCA----------------------------------------------------------------------ACAGCAGC---------------ATCCGCAGCA------------------ACACTACC-------------------AGC----T---------------------------AAACAGGAAACAGTTGCAGTTGCTGCCGCCTGTGTTGCTCCTCGCAAATTGGCAAAAATTCAGAAAAT---------TCCGA------------AGGA----------------------------------------------------------------------ACCCGAG-------------------GAGCTGA-AAGCCAAGAAAAAGGCAAA--------------------------------GTGT-----------------------GA--------GGCAGCAGCAGCAGCAGTAGC---------AGCAGC------------GGCGGCGACTCATTACGA-AAAAA---------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----------------------------------------------------------------------ACCCGAG-------------------GAGCTGA-AAGC.........................................................................................................................................................................................................2011.0010100000
...............................................................................CAACAGC-----------------------------------------------------------------------------------AACAACAGCAGCA----------------------------------------------------------------------ACAGCAGC---------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.2010100000
.GCAGCAACAGCAGCAGCAGC--A------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1533000000
...................................................................................AGC-----------------------------------------------------------------------------------AACAACAGCAGCA----------------------------------------------------------------------ACAGCAGC---------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.0910000010
.....................................................................................C-----------------------------------------------------------------------------------AACAACAGCAGCA----------------------------------------------------------------------ACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
.......ACAGCAGCAGCAGC--A------------------------------------------GCAA---------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
...................................................................CAA---------CAACAGC-----------------------------------------------------------------------------------AACAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000
AGCAGCAACAGCAGCAGCAGC--A------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010

Generated: 06/08/2015 at 04:55 PM