ID:

dpe_1929

Coordinate:

scaffold_6:5065722-5065872 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in alignment

mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL12649-cds]; exon [dper_GLEANR_12789:4]; intron [Dper\GL12649-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATAAGGCATATACTTCTCTCGCTCTCTGGGCGTCTAAATATCGGTGCATTCACGCAAACATATCGATAGATTTGTGTTGGTGTTGGTGGTTCAAAACGTTTTTCTTGAACTGAAGGCTGTCTCTGTTTTTTCCAGTGCAGCTAGTTCGCTCCATAAGAATTTTGGATCCAGTGACTCATGGCTATTTTTTTTTACCGGCAGACGGACAGCAGAAAAGTGTGATTTACACGAAAATTGAAACATCCAAAGAC ************************************************.....................((((...(((((((.((((((((((.....((((((((((...((((((..(((.......))).)))))))))))).......))))))))))).))).))))..................))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	V042 embryo	V057 head
.......................................................................................................................................................................................................AGACGGACAGCAGAAAAGTGTGAT............................	24	0	1	1.00	1	1	0	0
.................................................................ATAGATATGTGTGGGGGTTGGT....................................................................................................................................................................	22	3	7	0.14	1	0	1	0
.............................................................................................................................................................................ACTCATGGCTGTTTTTTGTA..........................................................	20	3	20	0.05	1	0	0	1

Anti-sense strand reads

TATTCCGTATATGAAGAGAGCGAGAGACCCGCAGATTTATAGCCACGTAAGTGCGTTTGTATAGCTATCTAAACACAACCACAACCACCAAGTTTTGCAAAAAGAACTTGACTTCCGACAGAGACAAAAAAGGTCACGTCGATCAAGCGAGGTATTCTTAAAACCTAGGTCACTGAGTACCGATAAAAAAAAATGGCCGTCTGCCTGTCGTCTTTTCACACTAAATGTGCTTTTAACTTTGTAGGTTTCTG ************************************************.....................((((...(((((((.((((((((((.....((((((((((...((((((..(((.......))).)))))))))))).......))))))))))).))).))))..................))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head
....................................................................................................................................................................................................................................GCTTTTAAGTTTGTAGGTGTT..	21	3	20	0.05	1	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droPer2	scaffold_6:5065672-5065922 +	dpe_1929	ATAAGGCATAT----ACTT-CTCTCGCTCTCTGGG-CGTCTAAATA------TCGGTGCATTCA--CGCAAACATATCGATA---------------GATTTGTGTTGGTGTTGGTGGTTCAAAACGTTTTTCTTGAACTGAAGGCTGTCTCTGTTTTTTCCAGTGCAGCTAGTTCGCTCCATAAGAATTTTGGATCCAGTGACTCATGGCTATTTTTTTTTACCGGCAGACGGACAGCAGAAAAGTGTGATTTACACGAAAATTGAAACATCCAAAGAC
dp5	2:29692009-29692263 +		CTAAGGCATATACATACTT-CTCTCGCTCTCTGGG-CGTCTAAATA------TCGGTGCATTCA--CGCAAACATATCGATA---------------GATTTGTGTTGGTGTTGGTGGTTCAAAACGTTTTTCTTGAACTGAAGGCTGTCTCTGTTTTTTCCAGTGCAGCTAGTTCGCTCCATAAGAATTTTGGATCCAGTGACTCATGGCTATTTTTTTTTACCGGCAGACGGACAGCAGAAAAGTGTGATTTACACGAAAATTGAAACATCCAAAGAC
droWil2	scf2_1100000004968:210150-210250 -		ATTATGCACCA------TC-CCC------ATATAGTTTCTCGCTGG------TTA--CCAGTGGGAAGCAGGTATATCG-------------TAATTGTTTAGTATTTTAGTAGTAGATTTAAAGGGTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395339:70164-70174 -		TTTAAGAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000298139:19592-19704 -		ATTAACTCATT------------TTGAGCTTTGTG-CATTTGAATGCGATTTTTTTTCCACTCA--TGCAGATGTCTAG--TGTG------------TATACACTTTCGTAGTGATGGTCAAA--------------------------------------------------------------------------------------------------------------------------------TTTTCAGAGTTGAACCGAA----------
droEle1	scf7180000491278:2008876-2008980 -		ATAGATAGAGTGCACGAGTCCA--------------CATTTAATAA------TCGATG--TTAA--TACAGATGTACAGACA--GGCGAACATGG----------TCGATCAAGAGGGTTTAAAACGCTTCCTTCGACCTG-------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777559:12989-13068 -		ATAAGTCCGAA----A--T-CTCTTGCTCATATAGTTTCCCAGATC------TCG--ACGTTCA--TACGGACG--------------GACATGG----------CAGAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTGTT
droBia1	scf7180000302244:163606-163633 -		TTATACGAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGTATTCTAAGCT
droTak1	scf7180000414330:4558-4642 +		ATTAGCGAAATTTACAATC-GCCATGCATTTAGAG-CAGC----GG------TCGGCACACTCA--TACAATTATATT--TT---------------GTTTTATATTTGTGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409804:1505986-1506008 +		GTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACACGATTAAGCAAGT----------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ATAAGGCATAT----ACTT-CTCTCGCTCTCTGGG-CGTCTAAATA------TCGGTGCATTCA--CGCAAACATATCGATA---------------GATTTGTGTTGGTGTTGGTGGTTCAAAACGTTTTTCTTGAACTGAAGGCTGTCTCTGTTTTTTCCAGTGCAGCTAGTTCGCTCCATAAGAATTTTGGATCCAGTGACTCATGGCTATTTTTTTTTACCGGCAGACGGACAGCAGAAAAGTGTGATTTACACGAAAATTGAAACATCCAAAGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................AGACGGACAGCAGAAAAGTGTGAT............................	24	1	1.00	1	0	0	0	0	0	1

dp5

CTAAGGCATATACATACTT-CTCTCGCTCTCTGGG-CGTCTAAATA------TCGGTGCATTCA--CGCAAACATATCGATA---------------GATTTGTGTTGGTGTTGGTGGTTCAAAACGTTTTTCTTGAACTGAAGGCTGTCTCTGTTTTTTCCAGTGCAGCTAGTTCGCTCCATAAGAATTTTGGATCCAGTGACTCATGGCTATTTTTTTTTACCGGCAGACGGACAGCAGAAAAGTGTGATTTACACGAAAATTGAAACATCCAAAGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................AGACGGACAGCAGAAAAG..................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGACGGACAGCAGAAAAGT.................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................GATTTACACGAAAATTGAAAC..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACCGGCAGACGGACAGCAGA......................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAGACGGACAGCAGAAAAGTGTG..............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................AGACGGACAGCAGAAAAGTGTGATTT..........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................TTACCGGCAGACGGACAGCAGA......................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CCGGCAGACGGACAGCAGAA.....................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GACGGACAGCAGAAAAGTG................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................T-CTCTCGCTCTCTGGG-CGTCT...............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TTTTACCGGCAGACGGACAGCAGAA.....................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

ATTATGCACCA------TC-CCC------ATATAGTTTCTCGCTGG------TTA--CCAGTGGGAAGCAGGTATATCG-------------TAATTGTTTAGTATTTTAGTAGTAGATTTAAAGGGTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................GTAGATTTAAAGGGTTTT.....................................................................................................................................................	18	1	1.00	1	0	1	0	0	0

droBip1

TTTAAGAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTAACTCATT------------TTGAGCTTTGTG-CATTTGAATGCGATTTTTTTTCCACTCA--TGCAGATGTCTAG--TGTG------------TATACACTTTCGTAGTGATGGTCAAA--------------------------------------------------------------------------------------------------------------------------------TTTTCAGAGTTGAACCGAA----------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATAGATAGAGTGCACGAGTCCA--------------CATTTAATAA------TCGATG--TTAA--TACAGATGTACAGACA--GGCGAACATGG----------TCGATCAAGAGGGTTTAAAACGCTTCCTTCGACCTG-------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATAAGTCCGAA----A--T-CTCTTGCTCATATAGTTTCCCAGATC------TCG--ACGTTCA--TACGGACG--------------GACATGG----------CAGAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTGTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTATACGAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGTATTCTAAGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTAGCGAAATTTACAATC-GCCATGCATTTAGAG-CAGC----GG------TCGGCACACTCA--TACAATTATATT--TT---------------GTTTTATATTTGTGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACACGATTAAGCAAGT----------	Size	Hit Count	Total Norm	Total
No Reads

Generated: 06/08/2015 at 04:53 PM