dpe_1926

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCTGCCAAATTGGCGCCCAATGTGGGGCACCATCAGCAGCCCTCCCCTCGGTGGCGCCATCAGCCAAGGAGGAGAAAGCGCAGAAAGCAGGAGGAGTAGGAGGAGGCCTGGCCACAGGGACAGCAGCGGTTTTGTCGTCCAGCAAATCCCCTAACCAGCCAGAAACAGTTATTTTGGCGGCCAGCAATGTGAACGAGAAGCAAATACTCGCAAAAGCTTTCAAACGGTAAGTTTTCGCTGGGAATCGGAGG ************************************************.((((.......))))............((((....((.((.....((((.(((.(((((....)))((((.((((.....)))).)))).))...))))))).((.(((((((.......))))))))))).))..))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M021 embryo
....................................................................GAGGAGAAAGCGCAGAAAGCAGGAGGAG...........................................................................................................................................................	28	0	1	2.00	2	2	0
......................................................................................GCAAGAGGAGTAGGAGGAGTGCT..............................................................................................................................................	23	3	6	0.33	2	0	2

CGACGGTTTAACCGCGGGTTACACCCCGTGGTAGTCGTCGGGAGGGGAGCCACCGCGGTAGTCGGTTCCTCCTCTTTCGCGTCTTTCGTCCTCCTCATCCTCCTCCGGACCGGTGTCCCTGTCGTCGCCAAAACAGCAGGTCGTTTAGGGGATTGGTCGGTCTTTGTCAATAAAACCGCCGGTCGTTACACTTGCTCTTCGTTTATGAGCGTTTTCGAAAGTTTGCCATTCAAAAGCGACCCTTAGCCTCC ************************************************.((((.......))))............((((....((.((.....((((.(((.(((((....)))((((.((((.....)))).)))).))...))))))).((.(((((((.......))))))))))).))..))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M021 embryo
............................CGGGAGGCGTCGGGAGGGGAGC.........................................................................................................................................................................................................	22	3	4	0.25	1	1	0
............................................................................................................................................................................AAACCGCGGGTTGTTACA.............................................................	18	2	14	0.14	2	0	2
...............................TAATGGTCGGCAGGGGAGC.........................................................................................................................................................................................................	19	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_6:4836959-4837209 +	dpe_1926	GCT---------------GCCAAATTGGCGCCCAATGTGGGGC---ACCATCAGCAGCCCTCCCCTCGGTGGCGCCATCAGCCAAGGAGGA----------------------------------------------------------------GAA-----AG------CGCAGAAAGCAGGAGGAG--------------------------------------------------------TAGGAGGAGG--------------CCTGGCCACA------------GGGA---C-----------------------------------------------------------------------------------------------------------------AGCAGCG--GTTTTGTCGTCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTGGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTCGCAAAAGCTTTCAAACGGTAAGTTTTCG-C--------------------------------------------------------------------------------TGGGAATCGGAGG
dp5	2:29466317-29466565 +		GCT---------------GCCAAATTGGCGCCCAATGTGGGGC---ACCATCAGCAGCCCTCC-CTC-GTGGCGGCATCAGCCAAGGAGGA----------------------------------------------------------------GAA-----AG------CGCAGAAAGCAGGAGGAG--------------------------------------------------------TAGGAGGAGG--------------CCTGGCCACA------------GGGA---C-----------------------------------------------------------------------------------------------------------------AGCAGCG--GTTTTGTCGTCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTGGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTCGCAAAAGCTTTCAAACGGTAAGTTTTCG-C--------------------------------------------------------------------------------TGGGAATCGGAGG
droWil2	scf2_1100000004943:3746492-3746878 +		CAT------GCCGACCAAACCAAATTGGCGCCCAACGTGGAGCCACATAA-----------------------------------------TAGT-----C-----------GAAAGCAAAAGCACTC---------------------GCCGGAGGAATTGGAGCAGCAC---CAGCACCAGCAACCGAAACTAAAGTCCCTGCTAACGACAAACGATTTGGATTCG------------GAGAA------GGC----------------------------TA---ACGAGAAGGTGGCGAAGCATCTTCAT---------CTCC------AA------------C----TCCCCGAAAAAA---TGCAGCCGAAGGCGCCGGGCTTAGCCTTGGGATTGG-----------CAAAAAAT---------GCCAGCAAATCCCCAA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCGAGCAATGTGA--ATGAGAAGCAAATACTTGCGAAAGCTTTCAAACGGTAAGTTTTTG-T-TG---C---TGGTCTACTCACCCACCCACTCCCTCTCCCTCTC--------ATAG--------------------------------GGTGG
droVir3	scaffold_13047:7236889-7237048 +		AGG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGCG---------G------------CGGTGGGAGTGGAAGCGTA---------ACTAGCAAATCAGCCC----------------------------AGCCGCAGCCCGAAACAGTTATATTAACGGCCAGCAATGTGA--ACGAGAAGCAAATACTTGCAAAAGCTTTCAAGCGGTAAGTT---------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:3153742-3154016 +		CAATTTAGTGTT-------GGGCAACGGCCAGACGAAGGAGGA---GCAG-----------------------------------------CGACGCAAAC-----------TGCAGCCGA--TAGCTGCTAATAGAGGAGAGGCAGCTGCAGCAGTAGCAGGAGCAGGAACAGGAGAGACGAAAGGAAAGGAAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGCATT-----GC-AAGCAGCAAGACGTCGC----------------------------AGCCACAGCCCGAAACAGTTATATTAACGGACAGCAATGTGA--ACGAGAAGCAAATACTTGCAAAAGCTTTCAAGCGGTAAGTTACG--CC-----TTCGCATTGCCCA----------------------CTG-ACGGGAAGTG--------------------------------------
droGri2	scaffold_14830:3094845-3094966 +		GAG---------------AAAAAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG------------------------------------CGTCGGT---------GGCAGTAAGTCGTCGC----------------------------AGCCACAGCCCGAAACAGTTATATTAACGGCCAGCAATGTGA--ACGAGAAGCAAATACTTGCCAAAGCTTTCAAACGGTAAGTT---------------------------------------------------------------------------------------------------
droAna3	scaffold_13340:15365665-15365991 -		-------------------CCAAAGTGGCAAGCAACATGGGGC---ATAA-----------------------------------------TGGCCTAATC-----------CAAAGCCAA--AATACAC------------------------GAGAAATG---------------------GAGCAAAGGCTGAAGTCGCCGCCTGGGGCAAACAGTTTGGATTTTGGT---------GGGAA------TGG----------------------------ACATAA------------------------------CCG----------------------------------GCGAAAAG---TGCTGGAGGG--------------------GATC---------TCCTCCGACAAT---------GCCAGCAAATCCCCTCGAAATCCTCCGGCCCA-GTCCAAGCACCAGCCCCAGCCAGAAACGGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTCGCAAAAGCTTTCAAACGGTAAGTTTTC--------------------------------------------C----TGAGTTATGGCCTTGGGCTCTCGGCTCTCGACTCTG-----------
droBip1	scf7180000396708:4662766-4663068 +		-------------------CCAAAGTGGCAAGCAACATGGGGC---ATAA-----------------------------------------TGGCCTAATC-----------CAAAGCCAA--AATACAC------------------------GAGAAATG---------------------GAGCAAAGGCTGAAGTCGCCGCCTGGGGCAAACAGTTTGGATTTCGGT---------CGGAA------TGG----------------------------ACATGA------------------------------CCG----------------------------------GCGAAAAG---TGCTGGAGGG--------------------GATCGG---T---GCCTCCGACAAT---------GCCAGCAAATCTCCACGAAATCC-----CCCACATCCA--CACCAGCCCCAACCAGAAACGGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTC--------------------------------------------C----TGAGTTATGGCCTGG--------------------------------
droKik1	scf7180000302707:227757-228060 +		GG-----------------CCAGAGTGGCGCCCAACGTGGGAC---A---------------------------------------------GTCG---GCCGAAGCCAGCT----------GAATGC---------------------GCTGCAGGAACTAGAGCAGCAGCAACAAAAACACCAGAACAGACTAAAGACCCAGCCCGTGGCGAACAGTTTTGATCTG------------GGGAG------TGA----------------------------GCATCA---------------------GAATCCCCACCG----------------------------------CCGAAAGG---GACAGGAGAAGG-----------------------------------CGGGCAAT---------GCCAGCCAATCCCCTA----------------------------A---CCAGCCCGAAACAGTTATTTTGGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTGGCAAAAGCATTCAAACGGTAAGTTGCG--CCTGTAAGG-------GTGC----------------------C----TGAGTTAT---------------------------------------
droFic1	scf7180000453812:14654-14986 -		GAG---------------TCCAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---GCCAACGCGGACA----------AAATTC---------------------GCTGCAGGAACTGGAGC---AGCAACAAAAACACGAGCAAAGGCTGAGGTCTGAGCCCGTGGCAAACAGTTTGGATTTGGGGGATTTGGCGGGGAA------CGG----------------------------ATACCACCAC---------------------------------C------TA------CACCAGATTCGG-CCCCAAAAAGCGGTGCA--------------------------------AAGTGCGGCTAGCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTGGCGAAAGCTTTCAAACGGTAAGTT----------------------------------------------------------ATGGCCTTGGTCC--------------CTGGGCCTCGG---
droEle1	scf7180000490994:781945-782066 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACTGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTG--CC-----GG-------GCGC----------------------C----TGAGTTATGGCCTTG--------------------------------
droRho1	scf7180000777405:59088-59405 -		GAG---------------GGAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGACGGCC-------------------------------------------GGAACTGGAGC---AGCAACAAAAACACGAGGAAAAGCTGAGGTCTCAGCCTGTGGCAAACAATTTGGATTTG------------GGGAA------CGA-ATCTCCCCATCTCCCCCATCCACATGAACAT--------------------------------CCA-------------------C------CCCAC-CCACAAAAAG---TGCA--------------------------------AAGTGCGGCTGCCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTG--CC-----GG-------GCGC----------------------C----TGAGTTATG--------------------------------------
droBia1	scf7180000302402:776720-776843 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTGGCCAAAGCTTTCAAACGGTAAGTTTCG--CA-----GG----GGCACCT----------------------C----TGAGTTATGGCCTT---------------------------------
droTak1	scf7180000410451:40136-40466 +		GGC---------------ACAAAACTGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGTTGGCC----------AAATTC---------------------GCTGCAGGAACTGGAGA---AGCAACAAAAACACGAGCAAAAGCTGAGGTCTCAGCCCGTGGCAAACAATTTGGATTTG------------GGCAA------CGA----------------------------GCATCCACAGC--AACACGAAGCA-------------------C------AG------CCCCATCCACAT-CCGCAAAAAG---TGCA--------------------------------AAGTGCGGCTGCCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTCG--CA-----GG---GGGCACCT----------------------C----TGAGTTATG--------------------------------------
droEug1	scf7180000409804:1280712-1281066 +		GAC---------------ACAAAAATGGCGCCCAACGTGGGAC---ATAA-----------------------------------------TGGTG---CCCAACGTTGGCC----------GAATTC---------------------GCTACAGGAACTAGAG------CAACAAAAACATGAGGAAAAGCTGAGGTCTCAGCCCGTAGAAAACAATTTTGATTCG------------GGGAA------TGA----------------------------GTATCACCAGAAG---C---A------------------GCACCAGGACCAGCGCCATCCCCAACACAAT-CCCCAAAAAG---TGCA--------------------------------AAGTGCGGCTGCCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTGGA-------C---CGGTCGTCTC-------CCCTCCCTC-CCCTCTCATTGAGTTATG--------------------------------------
dm3	chr3R:15016021-15016353 +		GAC---------------ACAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGTTGGCC----------GAATAC---------------------GCTGCAGGAACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTGTGGCAAACAATTTGGATTCG------------AGGAA------CGA----------------------------GAATAA------------------------------CCATCGCC------AA------CCCCATCCACAG-TCGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATGGCCTTGGC------------AATTCTGGGCCTCGG---
droSim2	3r:6241955-6242274 -		GAC---------------ACAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGTTGGCC----------GAATAC---------------------GCTGCAGGAACTGGAGCGGCAGCAACAAAAACACGAGCAAAGCATGAGGCTCCAGCCTGTGGCAAACAATTTGGATTCG------------GGGAA------CGA----------------------------GAGTAG------------------------------CCAGCGTC------AA------CCCCATTCCCAG-CCGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----CGAGTTATGGCCTTGGT-----------------TG-----------
droSec2	scaffold_25:744771-744882 -		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG-AACAGTTATTTTAGCGGCCAGCAATGTGTATATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATGGCCTTGG-----------------CTG-----------
droYak3	3R:3705133-3705448 +		GAC---------------ACAAAAATGGCGCCCAACGTCGGGC---ATAA-----------------------------------------TGGCG---CCCAGCGTTGGCC----------AAATAC---------------------GCTGCAGGAACTGGAGAAGCAGCAACAAAAACACGAGCAAAAGCTGAGGCTCCAGCCTGTGGCAAGCAATTTGGATTCT------------GGGAA------CAA----------------------------GAATAACCAGCCG---C---A------------------GCACC------AG------TCCCATCCCCAT-CTGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATG--------------------------------------
droEre2	scaffold_4770:6612560-6612893 -		GAC---------------ACAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAGCGTTGGCC----------AAATAC---------------------GCTGCAGGAACTGGAGCAGCAGCAACAAGAACACGAGCAAAAGCTGAGGCTCCAGCCTGTGGCAAACAATTTGGATGCG------------GGGAG------CGA----------------------------GAATAA------------------------------CCAGCCCCAGTCCCAGCCCCATTCCCATTCCCAT-CCGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATGGCCTTGA---------------TTCTG-----------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GCT---------------GCCAAATTGGCGCCCAATGTGGGGC---ACCATCAGCAGCCCTCCCCTCGGTGGCGCCATCAGCCAAGGAGGA----------------------------------------------------------------GAA-----AG------CGCAGAAAGCAGGAGGAG--------------------------------------------------------TAGGAGGAGG--------------CCTGGCCACA------------GGGA---C-----------------------------------------------------------------------------------------------------------------AGCAGCG--GTTTTGTCGTCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTGGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTCGCAAAAGCTTTCAAACGGTAAGTTTTCG-C--------------------------------------------------------------------------------TGGGAATCGGAGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................GAGGA----------------------------------------------------------------GAA-----AG------CGCAGAAAGCAGGAGGAG--------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2

dp5

GCT---------------GCCAAATTGGCGCCCAATGTGGGGC---ACCATCAGCAGCCCTCC-CTC-GTGGCGGCATCAGCCAAGGAGGA----------------------------------------------------------------GAA-----AG------CGCAGAAAGCAGGAGGAG--------------------------------------------------------TAGGAGGAGG--------------CCTGGCCACA------------GGGA---C-----------------------------------------------------------------------------------------------------------------AGCAGCG--GTTTTGTCGTCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTGGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTCGCAAAAGCTTTCAAACGGTAAGTTTTCG-C--------------------------------------------------------------------------------TGGGAATCGGAGG

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droWil2

CAT------GCCGACCAAACCAAATTGGCGCCCAACGTGGAGCCACATAA-----------------------------------------TAGT-----C-----------GAAAGCAAAAGCACTC---------------------GCCGGAGGAATTGGAGCAGCAC---CAGCACCAGCAACCGAAACTAAAGTCCCTGCTAACGACAAACGATTTGGATTCG------------GAGAA------GGC----------------------------TA---ACGAGAAGGTGGCGAAGCATCTTCAT---------CTCC------AA------------C----TCCCCGAAAAAA---TGCAGCCGAAGGCGCCGGGCTTAGCCTTGGGATTGG-----------CAAAAAAT---------GCCAGCAAATCCCCAA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCGAGCAATGTGA--ATGAGAAGCAAATACTTGCGAAAGCTTTCAAACGGTAAGTTTTTG-T-TG---C---TGGTCTACTCACCCACCCACTCCCTCTCCCTCTC--------ATAG--------------------------------GGTGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AGG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGCG---------G------------CGGTGGGAGTGGAAGCGTA---------ACTAGCAAATCAGCCC----------------------------AGCCGCAGCCCGAAACAGTTATATTAACGGCCAGCAATGTGA--ACGAGAAGCAAATACTTGCAAAAGCTTTCAAGCGGTAAGTT---------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGCG---------G------------CGGTGGG.........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGCG---------G------------CGGTG...........................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................GGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................GGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................GGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.GG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..G---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................GAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
....................GA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................GAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------G.........................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................GAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GG........................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..G---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................GAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------G.........................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..G---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................GAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................A-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................GA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................A-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................AG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GG........................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGCG---------G------------CGG.............................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..G---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................G------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGC.......................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGCG---------G------------CG..............................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GGCG---------G------------C...............................................................................................................................................................................................................................................................	18	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................GGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................GAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------G.........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................G------GAGGAG------GAGGAG--------------------------------------------------------GAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................GGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GG........................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................GGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GG........................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................GAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------GG........................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................GAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................GGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GGAGGAGGAG------GAGGAG------GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................G------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------G.........................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................GGAG------GAGGAG------GAGGAG--------------------------------------------------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.GG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGG---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................GGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..G---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................GGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................G------GAGGAG------GAGGAG--------------------------------------------------------GAGGAGGA---------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..G---------------AGGA-------------------------------------------------------------------------------------------------------------------------------------GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................GGAGGAGGAG------GAGGAG------GAGGAG--------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAATTTAGTGTT-------GGGCAACGGCCAGACGAAGGAGGA---GCAG-----------------------------------------CGACGCAAAC-----------TGCAGCCGA--TAGCTGCTAATAGAGGAGAGGCAGCTGCAGCAGTAGCAGGAGCAGGAACAGGAGAGACGAAAGGAAAGGAAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGCATT-----GC-AAGCAGCAAGACGTCGC----------------------------AGCCACAGCCCGAAACAGTTATATTAACGGACAGCAATGTGA--ACGAGAAGCAAATACTTGCAAAAGCTTTCAAGCGGTAAGTTACG--CC-----TTCGCATTGCCCA----------------------CTG-ACGGGAAGTG--------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GAG---------------AAAAAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG------------------------------------CGTCGGT---------GGCAGTAAGTCGTCGC----------------------------AGCCACAGCCCGAAACAGTTATATTAACGGCCAGCAATGTGA--ACGAGAAGCAAATACTTGCCAAAGCTTTCAAACGGTAAGTT---------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

-------------------CCAAAGTGGCAAGCAACATGGGGC---ATAA-----------------------------------------TGGCCTAATC-----------CAAAGCCAA--AATACAC------------------------GAGAAATG---------------------GAGCAAAGGCTGAAGTCGCCGCCTGGGGCAAACAGTTTGGATTTTGGT---------GGGAA------TGG----------------------------ACATAA------------------------------CCG----------------------------------GCGAAAAG---TGCTGGAGGG--------------------GATC---------TCCTCCGACAAT---------GCCAGCAAATCCCCTCGAAATCCTCCGGCCCA-GTCCAAGCACCAGCCCCAGCCAGAAACGGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTCGCAAAAGCTTTCAAACGGTAAGTTTTC--------------------------------------------C----TGAGTTATGGCCTTGGGCTCTCGGCTCTCGACTCTG-----------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

-------------------CCAAAGTGGCAAGCAACATGGGGC---ATAA-----------------------------------------TGGCCTAATC-----------CAAAGCCAA--AATACAC------------------------GAGAAATG---------------------GAGCAAAGGCTGAAGTCGCCGCCTGGGGCAAACAGTTTGGATTTCGGT---------CGGAA------TGG----------------------------ACATGA------------------------------CCG----------------------------------GCGAAAAG---TGCTGGAGGG--------------------GATCGG---T---GCCTCCGACAAT---------GCCAGCAAATCTCCACGAAATCC-----CCCACATCCA--CACCAGCCCCAACCAGAAACGGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTC--------------------------------------------C----TGAGTTATGGCCTGG--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GG-----------------CCAGAGTGGCGCCCAACGTGGGAC---A---------------------------------------------GTCG---GCCGAAGCCAGCT----------GAATGC---------------------GCTGCAGGAACTAGAGCAGCAGCAACAAAAACACCAGAACAGACTAAAGACCCAGCCCGTGGCGAACAGTTTTGATCTG------------GGGAG------TGA----------------------------GCATCA---------------------GAATCCCCACCG----------------------------------CCGAAAGG---GACAGGAGAAGG-----------------------------------CGGGCAAT---------GCCAGCCAATCCCCTA----------------------------A---CCAGCCCGAAACAGTTATTTTGGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTGGCAAAAGCATTCAAACGGTAAGTTGCG--CCTGTAAGG-------GTGC----------------------C----TGAGTTAT---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAG---------------TCCAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---GCCAACGCGGACA----------AAATTC---------------------GCTGCAGGAACTGGAGC---AGCAACAAAAACACGAGCAAAGGCTGAGGTCTGAGCCCGTGGCAAACAGTTTGGATTTGGGGGATTTGGCGGGGAA------CGG----------------------------ATACCACCAC---------------------------------C------TA------CACCAGATTCGG-CCCCAAAAAGCGGTGCA--------------------------------AAGTGCGGCTAGCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTGGCGAAAGCTTTCAAACGGTAAGTT----------------------------------------------------------ATGGCCTTGGTCC--------------CTGGGCCTCGG---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACTGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTG--CC-----GG-------GCGC----------------------C----TGAGTTATGGCCTTG--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAG---------------GGAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGACGGCC-------------------------------------------GGAACTGGAGC---AGCAACAAAAACACGAGGAAAAGCTGAGGTCTCAGCCTGTGGCAAACAATTTGGATTTG------------GGGAA------CGA-ATCTCCCCATCTCCCCCATCCACATGAACAT--------------------------------CCA-------------------C------CCCAC-CCACAAAAAG---TGCA--------------------------------AAGTGCGGCTGCCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTG--CC-----GG-------GCGC----------------------C----TGAGTTATG--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ACGAGAAGCAAATACTGGCCAAAGCTTTCAAACGGTAAGTTTCG--CA-----GG----GGCACCT----------------------C----TGAGTTATGGCCTT---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGC---------------ACAAAACTGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGTTGGCC----------AAATTC---------------------GCTGCAGGAACTGGAGA---AGCAACAAAAACACGAGCAAAAGCTGAGGTCTCAGCCCGTGGCAAACAATTTGGATTTG------------GGCAA------CGA----------------------------GCATCCACAGC--AACACGAAGCA-------------------C------AG------CCCCATCCACAT-CCGCAAAAAG---TGCA--------------------------------AAGTGCGGCTGCCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTCG--CA-----GG---GGGCACCT----------------------C----TGAGTTATG--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAC---------------ACAAAAATGGCGCCCAACGTGGGAC---ATAA-----------------------------------------TGGTG---CCCAACGTTGGCC----------GAATTC---------------------GCTACAGGAACTAGAG------CAACAAAAACATGAGGAAAAGCTGAGGTCTCAGCCCGTAGAAAACAATTTTGATTCG------------GGGAA------TGA----------------------------GTATCACCAGAAG---C---A------------------GCACCAGGACCAGCGCCATCCCCAACACAAT-CCCCAAAAAG---TGCA--------------------------------AAGTGCGGCTGCCAGCAAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTGGA-------C---CGGTCGTCTC-------CCCTCCCTC-CCCTCTCATTGAGTTATG--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAC---------------ACAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGTTGGCC----------GAATAC---------------------GCTGCAGGAACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTGTGGCAAACAATTTGGATTCG------------AGGAA------CGA----------------------------GAATAA------------------------------CCATCGCC------AA------CCCCATCCACAG-TCGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATGGCCTTGGC------------AATTCTGGGCCTCGG---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................TTTGGATTCG------------AGGAA------CGA----------------------------GA......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATGGCGCCCAACGTGGGGC---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAATGTGA--ATGAGCTA....................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAC---------------ACAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAACGTTGGCC----------GAATAC---------------------GCTGCAGGAACTGGAGCGGCAGCAACAAAAACACGAGCAAAGCATGAGGCTCCAGCCTGTGGCAAACAATTTGGATTCG------------GGGAA------CGA----------------------------GAGTAG------------------------------CCAGCGTC------AA------CCCCATTCCCAG-CCGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----CGAGTTATGGCCTTGGT-----------------TG-----------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG-AACAGTTATTTTAGCGGCCAGCAATGTGTATATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATGGCCTTGG-----------------CTG-----------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GAC---------------ACAAAAATGGCGCCCAACGTCGGGC---ATAA-----------------------------------------TGGCG---CCCAGCGTTGGCC----------AAATAC---------------------GCTGCAGGAACTGGAGAAGCAGCAACAAAAACACGAGCAAAAGCTGAGGCTCCAGCCTGTGGCAAGCAATTTGGATTCT------------GGGAA------CAA----------------------------GAATAACCAGCCG---C---A------------------GCACC------AG------TCCCATCCCCAT-CTGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATG--------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GAC---------------ACAAAAATGGCGCCCAACGTGGGGC---ATAA-----------------------------------------TGGCG---CCCAGCGTTGGCC----------AAATAC---------------------GCTGCAGGAACTGGAGCAGCAGCAACAAGAACACGAGCAAAAGCTGAGGCTCCAGCCTGTGGCAAACAATTTGGATGCG------------GGGAG------CGA----------------------------GAATAA------------------------------CCAGCCCCAGTCCCAGCCCCATTCCCATTCCCAT-CCGCAAAAAG---TGCA--------------------------------A---------------AAT---------GCCAGCAAATCCCCTA----------------------------A---CCAGCCAGAAACAGTTATTTTAGCGGCCAGCAATGTGA--ATGAGAAGCAAATACTGGCAAAAGCTTTCAAACGGTAAGTTTTCCC-------C---CATTCGCCT----------------------C----TGAGTTATGGCCTTGA---------------TTCTG-----------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_1926

scaffold_6:4837009-4837159 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.3	-37.1	-37.1