ID:

dpe_1922

 Coordinate:

scaffold_6:4731533-4731683 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.54 -7.14 -6.9 -6.9

Flybase annnotation

exon [dper_GLEANR_12168:3]; CDS [Dper\GL11983-cds]; intron [Dper\GL11983-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
mature
star
  1. scaffold_948:3701-3721 -
  2. scaffold_169:69792-69812 -
  3. scaffold_112:168562-168582 -
  4. scaffold_0:1729557-1729577 -
  5. scaffold_0:6642437-6642457 -
  6. dpe_1922  scaffold_6:4731626-4731646 -
  7. scaffold_5:1253209-1253229 -
  8. scaffold_16:1076509-1076529 -
  9. scaffold_57:223855-223875 -
  10. scaffold_30:385452-385472 -
  11. scaffold_99:68065-68085 -
  12. scaffold_2523:1948-1968 -
  13. scaffold_1331:3668-3688 -
  14. scaffold_1431:3036-3056 -
  15. scaffold_4158:268-288 -
  16. scaffold_5904:263-283 -
  17. scaffold_8618:556-576 -
  18. scaffold_6678:455-475 -
  19. scaffold_6691:422-442 -
  20. scaffold_6994:1237-1257 -
  21. scaffold_2:886116-886136 +
  22. scaffold_84:131183-131203 +
  23. scaffold_23:668520-668540 +
  24. scaffold_43:295106-295126 +
  25. scaffold_57:127785-127805 +
  26. scaffold_54:12987-13007 +
  27. scaffold_19:1632305-1632325 +
  28. scaffold_39:744086-744106 +
  29. scaffold_139:48323-48343 +
  30. scaffold_377:3918-3938 +
  31. scaffold_584:9867-9887 +
  32. scaffold_655:2483-2503 +
  33. scaffold_655:4857-4877 +
  34. scaffold_3790:305-325 +
  35. scaffold_396:299-319 +
  36. scaffold_5296:713-733 +
  37. scaffold_5650:1099-1119 +
  38. scaffold_7724:603-623 +
  39. scaffold_7740:919-939 +
  40. scaffold_10200:816-836 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTCATTTTGAGTATCGGGTATAAAAATTGAAGGAAACGCTAAAGGTAAAGGAAGTACTGGGTTCTGCGGCCATCGGACAGTCGTAAATCATTTCTCATTTCGTCTCATTTCAGCTGGGAGTATAACGGGGGATGCAGGATCGGTGGCAACCGCGACTGTGGTT
***************************************************************************************.........((...((.((((..................................)))).)).))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V057
head
 M042
female body
...............................................................................................................................TAAAGGTAAAGGAAGTACTGGGTTC................................................................................................... 25 0 1 2.00 2 2 0 0
........................................................................................................................GAAACGCTAAAGGTAAAGGAAGTAC.......................................................................................................... 25 0 1 2.00 2 2 0 0
...................................................................................................................TGAAGGAAACGCTAAAGGTAAAGGAAG............................................................................................................. 27 0 1 2.00 2 2 0 0
...................................................................................................................TGAAGGAAACGCTAAAGGTAAAGG................................................................................................................ 24 0 1 1.00 1 1 0 0
............................................................................................................TAAAAATTGAAGGAAACGCTAAAGG...................................................................................................................... 25 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................AACGGGGGATGCGGGTTCG..................... 19 2 1 1.00 1 0 1 0
........................................................................................................................................................................................................................GGGATGCAGGATCGGTGGCAACC............ 23 0 1 1.00 1 1 0 0
..................................................................................................................................................................................................................TAACGGGGGATGCAGGATCGA.................... 21 1 1 1.00 1 1 0 0
...................................................................................................................................................................................................................AACGGGGGATGCAGGATCGGTG.................. 22 0 1 1.00 1 1 0 0
.......................................................................................ACTCATTTTGAGTATCGGGTA............................................................................................................................................... 21 0 20 0.40 8 0 0 8
...................................................................................................................................................................................................................AACGGGGGATGCGGGTTCGC.................... 20 3 3 0.33 1 0 1 0
....................................................................................................................................................................................................................ACGGGGGATGAAGGGTCGG.................... 19 2 3 0.33 1 0 1 0
...................................................................................................................................................................................................................AACGGGGGATACGGGATCG..................... 19 2 3 0.33 1 0 1 0
................................................................................................................................................TTGGGTTCTGCGGCGATC......................................................................................... 18 2 4 0.25 1 0 1 0
...................................................................................................................................................................................................................AACGGGGGATGATGGCTCG..................... 19 3 20 0.15 3 0 3 0
.................................................................................................................................................................................................................ATAACTGGGGATGCGGGATG...................... 20 3 8 0.13 1 0 0 1
....................................................................................................................................................................................................................ACGGGAGGTGCAGTATCGG.................... 19 3 14 0.07 1 0 1 0
....................................................................................................................................................................................................................ACGGGGGATGCAGCATATG.................... 19 3 20 0.05 1 0 1 0

Anti-sense strand reads

TCTTATATATATGAAATACCCCAGCCTTTGCTAAGGAAGACCTGCAATGTGTGTAGGTGAAAATGGTGTTTAGATTATATGGGGTTATGAGTAAAACTCATAGCCCATATTTTTAACTTCCTTTGCGATTTCCATTTCCTTCATGACCCAAGACGCCGGTAGCCTGTCAGCATTTAGTAAAGAGTAAAGCAGAGTAAAGTCGACCCTCATATTGCCCCCTACGTCCTAGCCACCGTTGGCGCTGACACCAA
***************************************************************************************************.........((...((.((((..................................)))).)).))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 V057
head
 V050
head
 M042
female body
 V111
male body		 M021
embryo
...................................................................................................................................................................................................................................ACCCACCATTGGCGCTGAC..... 19 2 1 179.00 179 86 63 13 10 0 7
....................................................................................................................................................................................................................................ACCACCATTGGCGCTGAC..... 18 2 3 5.00 15 0 12 0 0 0 3
...........................................GCAATGTGTGTAGGTGAAA............................................................................................................................................................................................. 19 0 20 4.65 93 0 0 0 0 93 0
..............................................ATGTGTGTAGGTGAAAATG.......................................................................................................................................................................................... 19 0 20 4.25 85 0 0 0 0 85 0
...................................................................................................................................................................................................................................ACCCACCATTGGCGCTGA...... 18 2 2 4.00 8 6 1 0 1 0 0
...................................................................................................................................................................................................................................ACCCACCATTGGCGCTGACG.... 20 3 5 3.20 16 6 3 1 5 1 0
....................................................................................................................................................................................................................................CCCACCATTGGCGCTGAC..... 18 2 1 3.00 3 0 1 0 0 0 2
...................................................................................................................................................................................................................................CCCCACCATTGGCGCTGAC..... 19 3 13 2.15 28 13 12 3 0 0 0
...................................................................................................................................................................................................................................AACCACCATTGGCGCTGAC..... 19 2 1 2.00 2 0 2 0 0 0 0
..............................................ATGTGTGTAGGTGAAAATGGTGT...................................................................................................................................................................................... 23 0 20 1.05 21 0 0 0 0 21 0
...................................................................................................................................................................................................................................ACCCACAATTGGCGCTGAC..... 19 3 11 0.36 4 2 2 0 0 0 0
......................................................................................................................................................................................................................................CACCATTGGCGCTGACGAC.. 19 3 20 0.30 6 0 3 0 1 0 2
................................................................................................................................................................................................AGTAAATTCGACCGTCATAAT...................................... 21 3 4 0.25 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................ACCCACCATTGGCGCTGAT..... 19 3 10 0.20 2 0 2 0 0 0 0
..................................................................................................................................................................................................................................CACCCACCATTGGCGCTGAC..... 20 3 5 0.20 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................CCCACCATTGGCGCTGACG.... 19 3 12 0.17 2 0 2 0 0 0 0
...................................................................................................................................................................................................................................ACCCATCATTGGCGCTGAC..... 19 3 6 0.17 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................AACCCACCATTGGCGCTGAC..... 20 3 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CCACCATTGGCGCTGACGAC.. 20 3 7 0.14 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................ACCCACTATTGGCGCTGAC..... 19 3 8 0.13 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................GCCCACCATTGGCGCTGAC..... 19 3 8 0.13 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................ACCCAACATTGGCGCTGAC..... 19 3 14 0.07 1 0 1 0 0 0 0
....................CCAGCCTTTGCTAAGGACGACCTGCA............................................................................................................................................................................................................. 26 1 20 0.05 1 0 0 0 1 0 0
......................................................AGGTGAAAATGGTGTTTAGATTATA............................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0
..............................................................................ATGGGGTTATGAGTAAAACT......................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_6:4731483-4731733 - dpe_1922 AGAATATA----TATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATACCCCA-ATACTCAT----TTTGAGTAT-------------------------------------CGGGTATAAAAA-------TTG--A-------AG-------------GAAACGCTAAAGGT----------------AAAGGA-AGTACTGGGT---------------------TCTGCGGCCATCGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTAAAT---------CAT--------TTC----------------------------------------------------------------------------------------------------------------TCATTTC-----GTCTC---------------------ATTTCAGCTGGGAG-------TATAACGGGGGATGCAGGAT-CGGTGGCAACCGC--------------GACTGTG---G-TT
dp5 Unknown_group_129:12270-12454 - AGAATATA----TATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCTACTTTCACCACAAATCTAATATACCCCA-ATACTCAT----TTTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------CA----------------------A----GAG----------------------GA-----------------------------------------------AAGCTAACAAAACCC------------------------------------------------------------------------------CGG----------------------------GGCACCCTAC----------------------------------------------------------------------------------------------------------------------------------------GGTTAACGCGGCGAGAGGCGC-------------------------------------------------------------------------------------------------------------------------------G--------------------GATAATTT
droWil2 scf2_1100000014699:1024-1186 + AGAATATA----TATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTT-------TGGCGACTTTAATATACCATT-TCACCC------TATGGGTGT-------------------------------------ATGGTATAAAAA-------ACC-GC-------CA----------------------A----GACG------C-----------ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTTTCGTTTG---------------------ATTTCA-----------------------------------------------------------------------------
droVir3 scaffold_12799:505962-506170 - AGAATATA----CATACTTTATAGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTTGCACAAATACAGTATACACTT-ATACTCATTTTTAATGGGTTC-------------------------------------AGGGTATAAAAA-------AAA-CA-------TG----------------------T----AAG-AGATTCTACTTG-------G-----GAG----------------------TTCTCGAGTAGCGGATA---------------CTC------------------------------------------------------------------------------TGA----------------------------ACCATCTTATT------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------TTATT--------------------------ATTTCTTATTGTACCATAG------------------------------------------------------------------AATAT
droMoj3 scaffold_6441:93701-93933 - TGAATATA----TATACTTTGTGGGATCTGCCACGCCTCCTTCTGCCTGTTACATACTTTT--------AACAAAACTATTATACCCTGATTTCCCATTTTCAAAGGGTTC-------------------------------------AGGGTATAACAA-------GTAAGA-------AG------------------ACTCTAGTC----------------G------A-----GAC----------------------AGCTCGACTATGAGATC---------------CCC------------------------------------------------------------------------------T------------------------GACAAAACCATTATACC------------------------------------------------------CT---------GA--------TTTCCCAT--------------------------------------------------------------------------------------------------------------------------------------------------AT--TCAATGGAT--TCAGGATATAACAGGGTAAGAAGACT-C--------TAGTCGA--------------GACT------G
droGri2 scaffold_15203:11718933-11719149 - AGATTATATATATGTACTTTATGGGTTCGGAGATGCTTCCTTCTGCATGTTACATACAGTT-------GGTCAAAAGTTGTATACCCTTTATACCAATTTTTAGCGGGTTC-------------------------------------AGGGTATAAAAA-------TAT-GT-------TG----------------------A---------------------------AAT---TAGTTCG-------------------------CTCTAATATACTAAAGCCAAAAGAATCC---CATT------TA--------------------------------------------------------------------------------TGTTCTTC----------------------------------------------------------------------ACT---------CA--------TTTATCATTTTG----------------------------------------------------------------------------------------------------------TTTAT-----ATTCC---------------------ATTTCATTT---------------------------------------------------------------------AATTT
droAna3 scaffold_13230:939987-940208 - AGAATATA----TATTCTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-------GACCCAAATTATAATACCCTCT-------------GC-----A-------------------------------------AGGGTATAAAAA-------GAT-GT-------TA----------------------AATTC----------------GAATGG-ACTACTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGAA----------TGCCTTCGAACATCTCAAATCGGCACTAGTAAATCCGAATTTATTA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATACCCAG---------------------ATTTCAGCAAAGAATTTTG--CATAATAACGGATGCAA--------------------------------------------G
droBip1 scf7180000394327:632-830 + AGAATATA----TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-------GACCAAAATTATAATACCCTCT-------------GC-----AAGGGTAAAAAACATATATTTAAATGTTTATTATGTATAATCTATAAAAG-------TATTGA-------AA-----------------T----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTGCAATCTTCGCCC-----------------------------------------------------------AATCCCAAGT---------AAT--------TT--------G----------------------------------------------------------------------------------------------------------CCTTT-----GCCAC---------------------ATTATAGTTAGG----------------------------------------------------------------------A
droKik1 scf7180000300440:5311-5516 - AGAATATA----TATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-------GACTGAAATTATAATACCCTG---------------C-----A-------------------------------------AGGGTATAAAAA-------AGA-GC-------TA----------------------AATTT----------------GA-----A-GA------------------------------------------CAG--------TCG---TTTTGTTGCTGACAGATGTGTTTCAGAACTCGATCCTGCCCATT------------------------------------------------------------------------------------------------------------------------------------------------ATT--------AT----------------------------------------------------------------------------------------------------------A------------------------------------------------CAACTCCGGG-------CTTGTCATGGGATGCGA-------------TGTT--------------AAAGACT---A-CC
droFic1 scf7180000451630:11621-11814 + AGAATATA----TATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCT-------GACTGAAATTATAATACCCTT-TTGCTC------TGC-----A-------------------------------------AGGGTATAAAAA-------CAATGA-------CG-------------A--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATGATGAAAACAAAATTATAATGTTTGCCAAAATTTCTAT--------------------------------------------------------ATA---------TA--------TTTT----------------------------------------------------------------------------------------------------------------CCAAT--------------------------CTTTCCTATGGCAGCTAAAAA----------------------------------------------------------------AATAA
droEle1 scf7180000491211:284379-284610 - AGAATATA----TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCAAACTTCT-------GACTGAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAA-ATGTATTTGAATGGCACCAAAGTGTTA-------------------------------------------------------------------------------------------------------------------------------------------------TTC---CATTGACTTCTGTGTTTTAAATACC--TCTAACTCATTAACTTTATTTCTGTTTTGTTTCAGGTGGCAGTGGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTGGAGGCAGTGG-CGGCGGAGGAGGCGGC--------------GGCG------G
droRho1 scf7180000779985:1631873-1632097 - AGAATATA----TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-------GACCAAAATTATAATACCCTCT-------------GC-----A-------------------------------------AGGGTATAAATA-------TGC----------TA----------------------CAATT----------------TGTTG-AAGTGCA---------------------------------------------------GTT------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCCAACGCCGCATTCGTTTTTTATGGTTTTGATTTT-----GATTTATTTGTGGTTCGATTGTCAATCGGACGGTGA-------------T------G-----ATGAT-TAATTGCGACGGT--------------GAATGCC---A-AT
droBia1 scf7180000302067:3092-3291 + AGAATATA----TATACTTTATGGGGTCGGAAACTCTTCCTTCTACCTATTACATACTTTC-------CGACGGAACTAGTAATCCCTT-TTAGTC------TACCAGTAA-------------------------------------CAGGTATAAGAA-------GGGTGC-------CAAAATCAAAATTA-------------------------------------AA-GA------------------------------------------AAA--------ATC------------T------TA-----------------------------------------------------------------------------------TGTACACC-------------------------------------------------------------------GAAAATATATATTTTTTTTTAT-----------------------------------------------------------------------------------------TTTTTCC--------------------CCGAT--------------------------AGTTCCTATGGGAGCTA-------------T---------------------------------------------------------AA
droTak1 scf7180000414300:92-310 + AGAATATA----TATACTTTATGGGGTCGGAAACGCTTTCTTCTAGCTGTTACATACTTTT-------GCACGAATCTAGTATACCCTT-TTACTC------TACGAGTAA-------------------------------------CGGGTATAACTA-------GGAAGA-------A------------------CGCTATAGTC----------------G------AGT----------------------------TCCTTGACTATCAGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------CG--------TTTCTCAGCTAGTAGAATTGCTAGGGAAATGGAGAAATGCAAGCA-------------------------------------ACAAAGCGA------------------------------------------------------------------------------------------------------------------------AAGCAGCAATGCG--------ACTGT
droEug1 scf7180000409106:11539-11760 + AGAGTAAA----TATATTTTATAGGGTCGGAATCGCTTCCTTCTATCTGTTACATTCTTTT-------CAACGAATCTAGTATACCCTT-TTACTC------TAGGAGTAA-------------------------------------CGGGTATAATAAAACCAACA----ACGGG---AA-----------------CGGTA-------G-AAATTCCCTTCA-------C-----CCC----------------------TTCAAGAGAAGAGA-AGA--------ATC------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAC-----------------------------------------------------------------------------------------CTGCACC--------------------GC--------------------------------------GAGAGCGA----------------CGACGGCAACAGCGA-CGGCAGCAGCAGCGAA--------------GGCA------A
dm3 chrX:22388305-22388541 - AGAATATA----TATACTCTACATGGTCGGAAACACTTCCTTCTCCCTGTTTC----------------AACGAATCTAGTATACACTT-TTACTC------TACAAGTAA-------------------------------------CGGCTATACCAT-----------------------------------------------------------------TGTTG-AAGTT---TATTAAATCAATGAATCGACGGTTTTTTCAGCTT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCTTTTGG------ATCAACTACAATCTCGGCTA--A----------TGCCTGTGGCGACACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCG----------------------GCGGATGATGGATTCGGTAACGATGAC--------------------GATGATTT
droSim2 3l:22258382-22258577 + AGAATATA--TATATACTTTATATAGTCGGACACGCTTCCTTCTGCTTGTTACATACTTTT-------CAACGAAGCTAGTATACC-TC-CTACTC------CACGAGTCA-------------------------------------CGGGTATAATCCAAAGAAT----ACCTGGATGCAAAGCCAAAGTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTTAGAAGAATGTCGGCAGTCAGTAGATAATACAATTT---------------------------------------------------TCATTTA-----CACCC---------------------ACTTCA-----------------------------------------------------------------------------
droSec2 scaffold_11:2674538-2674733 + AGAATATA--TATATACTTTATATAGTCGGACACGCATCCTTCTGCTTGTTACATACTTTT-------CAACGAAGCTAGTATACC-TC-TTACTC------CACGAGTCA-------------------------------------CGGGTATTACCTTAAGGAT----CCACGGATGCATAGCCAAAGTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTAGAAGAATGTCGGCAGTCAGTAGATAATACAATTT---------------------------------------------------TCATTTA-----CACCC---------------------ACTTCA-----------------------------------------------------------------------------
droYak3 2R:10350210-10350398 - AGAATATA----TATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTT-------CAACGAATCTAGTATACCCTT-TTACTC------TACGAGTAA-------------------------------------CGGGTATAAATA-------TTGAGA--------A----------------------TAGCC----------------AAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTATGGTACACTTTTCAGGGTGAGGCATACGGAAAAGCCAACAC-----------------------CTCTC-----GTCCC---------------------ATTTAAGCTG------------------------------------------------------------------------G
droEre2 scaffold_4770:12407683-12407863 + AGAATATACATATATACTTTATATGGTCGGAAACGATTCCTTCTGCCTGTTACATACTTGT-------CAACGAATCTAGTATACCCTT-TTATTA------TA----TAA-------------------------------------CGGGTATAAATA-------TAAAGG-------AA-----------------A----A-----------------------GTG-AGTAAAGAGTTCG----------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------ACCCGTAAAG---------ATT--------TT----------------------------------------------------------------------------------------------------------ATAG-----CTTTG-----CGCTC---------------------ATTTAAATTGAATG-------CATA--------------------------------------------------------AC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGAATATA----TATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATACCCCA-ATACTCAT----TTTGAGTAT-------------------------------------CGGGTATAAAAA-------TTG--A-------AG-------------GAAACGCTAAAGGT----------------AAAGGA-AGTACTGGGT---------------------TCTGCGGCCATCGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTAAAT---------CAT--------TTC----------------------------------------------------------------------------------------------------------------TCATTTC-----GTCTC---------------------ATTTCAGCTGGGAG-------TATAACGGGGGATGCAGGAT-CGGTGGCAACCGC--------------GACTGTG---G-TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................TAAAGGT----------------AAAGGA-AGTACTGGGT---------------------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000002
...................................................................................................................................................................................................GAAACGCTAAAGGT----------------AAAGGA-AGTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000002
........................................................................................................................................................................TG--A-------AG-------------GAAACGCTAAAGGT----------------AAAGGA-AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000002
........................................................................................................................................................................TG--A-------AG-------------GAAACGCTAAAGGT----------------AAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..........................................................................................................................................................TAAAAA-------TTG--A-------AG-------------GAAACGCTAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGCAGGAT-CGGTGGCAACC..............................2311.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGGGGATGCAGGAT-CGA......................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGGGGATGCAGGAT-CGGTG....................................2211.001000001
............................................................................................ACTCAT----TTTGAGTAT-------------------------------------CGGGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.408080000
dp5
AGAATATA----TATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCTACTTTCACCACAAATCTAATATACCCCA-ATACTCAT----TTTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------CA----------------------A----GAG----------------------GA-----------------------------------------------AAGCTAACAAAACCC------------------------------------------------------------------------------CGG----------------------------GGCACCCTAC----------------------------------------------------------------------------------------------------------------------------------------GGTTAACGCGGCGAGAGGCGC-------------------------------------------------------------------------------------------------------------------------------G--------------------GATAATTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060600000000
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------CA----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020200000000
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2432.0060500001000
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2631.6750500000000
.................TTTATGGGGTCGGAAACGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.603200000032000
.....ATA----TATACTTTATGGGGTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.052102100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCTAC----------------------------------------------------------------------------------------------------------------------------------------GGTTAACGCGGCGAGAGGC..............................................................................................................................................................2411.0010100000000
........................................................................................................................................................TATAAAAA-------GGG-AA-------CA----------------------A----GAG----------------------GA-----------------------------------------------AAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................TGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2541.0040300000010
.............................................................................................................................................................................................................................................................................................GCTAACAAAACCC------------------------------------------------------------------------------CGG----------------------------GGCACCCT...........................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAC----------------------------------------------------------------------------------------------------------------------------------------GGTTAACGCGGCGAGAGGCG.............................................................................................................................................................2611.0010100000000
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.................................................................TCACCACAAATCTAATATACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.751501500000000
..................TTATGGGGTCGGAAACGATTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.751500000015000
....................................TTCCTTCTGGACGTTACACACATCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.651301300000000
.....................................TCCTTCTGGACGTTACACACATCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.60120910000200
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.6060400001100
....................................TTCCTTCTGGACGTTACACACATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.551101100000000
....................................TTCCTTCTGGACGTTACACACATCTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.4080800000000
....................................TTCCTTCTGGACGTTACACACATCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.4080710000000
........................................................................................................TGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.3640000000220
.....................................TCCTTCTGGACGTTACACACATCTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.3060510000000
.....................................TCCTTCTGGACGTTACACACATCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.3060600000000
....................................TTCCTTCTGGACGTTACACACATCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.3060600000000
........................................................................................................TGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510000000100
.........................................TCTGGACGTTACACACATCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.2550500000000
..................TTATGGGGTCGGAAACGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2040000004000
............................GGAAACGATTCCTTCTGGACGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2040400000000
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040400000000
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.1710010000000
.......................................................................................................TTGAGTAT-------------------------------------CGGGTATAAAAA-------GGG-AA-------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26100.1010100000000
...........................................TGGACGTTACACACATCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200000000
..........................................CTGGACGTTACACACATCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
................................................................................................AT----TTTGAGTAT-------------------------------------CGGGTATAAAAA-------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
......................................CCTTCTGGACGTTACACACATCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020200000000
.........................................TCTGGACGTTACACACATCTACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
..............TACTTTATGGGGTCGGAAACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200000000
............................................GGACGTTACACACATCTACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGAGAGGCGC-------------------------------------------------------------------------------------------------------------------------------G--------------------GAT.....18130.0810100000000
..........................................CTGGACGTTACACACATCTACTTTCACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.0710100000000
..........................................................TCTACTTTCACCACAAATCTAATATACCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29140.0710010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAACGCGGCGAGAGGC..............................................................................................................................................................19150.0710100000000
..................................................TACACACATCTACTTTCACCACAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26150.0710100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAACGCGGCGAGAGGCGC-------------------------------------------------------------------------------------------------------------------------------.............................21150.0710100000000
.................................................TTACACACATCTACTTTCACCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.0710100000000
......................................................CACATCTACTTTCACCACAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAACGCGGCGAGAGG...............................................................................................................................................................18150.0710100000000
..........................................................TCTACTTTCACCACAAATCTAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.0610100000000
...................TATGGGGTCGGAAACGATTCCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000001000
...................................ATTCCTTCTGGACGTTACACACATCTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510010000000
........................................................................AAATCTAATATACCCCA-ATACTCAT----T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
..................................................................CACCACAAATCTAATATACCCCA-ATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510010000000
....................................TTCCTTCTGGACGTTACACACATCTACTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510100000000
......................................................................................................TTTGAGTAT-------------------------------------CGGGTATAAAAA-------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.........................................TCTGGACGTTACACACATCTACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000010
...............................................................TTTCACCACAAATCTAATATACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
........................................TTCTGGACGTTACACACATCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.........................................TCTGGACGTTACACACATCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.........................................................................................................GAGTAT-------------------------------------CGGGTATAAAAA-------GG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..............TACTTTATGGGGTCGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010000000
.....ATA----TATACTTTATGGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
...............................................................TTTCACCACAAATCTAATATACCCCA-ATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510010000000
........................................................................................................TGAGTAT-------------------------------------CGGGTATAAAAA-------GG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..........................................CTGGACGTTACACACATCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
.....................................TCCTTCTGGACGTTACACACATCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
droWil2
AGAATATA----TATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTT-------TGGCGACTTTAATATACCATT-TCACCC------TATGGGTGT-------------------------------------ATGGTATAAAAA-------ACC-GC-------CA----------------------A----GACG------C-----------ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTTTCGTTTG---------------------ATTTCA-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTTTCGTT..........................................................................................................26204.0581000810
..........................................................................................................................................................TAAAAA-------ACC-GC-------CA----------------------A----GACG------C-----------ACCT---GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.20100010
............TATACTTTGTGGGGTCGGAGATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
...................................................................................................................................................................................................................CG------C-----------ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------T......................................................................................................................................................................................................................................................26200.10202000
...................................................................................................................................................................................................................................................CG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTTTCGTT..........................................................................................................28200.10201010
..................................................................................................................................................................................................................................................TCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTTTCG............................................................................................................27200.10200020
...........................................................................................................................................................................................................................C-----------ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------T......................................................................................................................................................................................................................................................24200.10202000
.......................................................................................................................................................................................................................................ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------T......................................................................................................................................................................................................................................................23200.05110000
....................................................................................................................................................................................................................................................G----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTTTCGT...........................................................................................................26200.05101000
.........................................................................................................................................................................................................................................CT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------T......................................................................................................................................................................................................................................................21200.05100010
...................................................................................................................................................................................................................CG------C-----------ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------............................................................................................................................................................................................................................................28200.05101000
........................................................................................................................................................................................................................................CCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------.......................................................................................................................................................................................................................................................21200.05100010
..........................................................................................................................................................................................................................................T---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TT..........................................................................................................................................................................................................................................24200.05100010
..........................................................................................................................................................................................................................................T---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--..................................................................................................................26200.05100001
..........................................................................................................................................................................................................................................T---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTT...............................................................................................................29200.05101000
................................................................................................................................................................................................................................................GGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTT...............................................................................................................26200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------TTC--------------------------------------------------------------------------------------------------------------------T--CTTT..............................................................................................................22200.05100010
.......................................................................................................................................................................................................................................ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTGGAA---------TTT--------T...........................................................................................................................................................................................................................................26200.05100010
..........................................................TTT-------TGGCGACTTTAATATACCATT-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.........................................TCTGCCTGTTACATACATTT-------TGGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
....................................................................................................................................................................................................................G------C-----------ACCT---GAGGTCG----------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------GCTCGTG...................................................................................................................................................................................................................................................................21200.05100100
............................................................T-------TGGCGACTTTAATATACCATT-TCACCC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
droVir3
AGAATATA----CATACTTTATAGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTTGCACAAATACAGTATACACTT-ATACTCATTTTTAATGGGTTC-------------------------------------AGGGTATAAAAA-------AAA-CA-------TG----------------------T----AAG-AGATTCTACTTG-------G-----GAG----------------------TTCTCGAGTAGCGGATA---------------CTC------------------------------------------------------------------------------TGA----------------------------ACCATCTTATT------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------TTATT--------------------------ATTTCTTATTGTACCATAG------------------------------------------------------------------AATATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................TACATTTGGATTTTGCACAAATACAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2771.4310001000100000000000000000111100001011100000000000000000000000000
......................................................TACATTTGGATTTTGCACAAATACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26111.1813000000000000000000000000302220000010210000000000000000000000000
....TATA----CATACTTTATAGGGTCGGAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501000000000000000000000000000000000000100000000000000000000000000
......................................................TACATTTGGATTTTGCACAAATAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000100000000000000000000000000000000000
......................................................TACATTTGGATTTTGCACAAATACAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.292000000000000000000000000000000000020000000000000000000000000000
..............................................................................................TCATTTTTAATGGGTTC-------------------------------------AGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.255001000000000000000000000000020100000010000000000000000000000000
........................................................................................T-ATACTCATTTTTAATGGGTTC-------------------------------------AGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.254000000000000000000000000000030010000000000000000000000000000000
......................................................TACATTTGGATTTTGCACAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000000000000000000000000000000003000000000000000000000000000000
...........................................................................................TACTCATTTTTAATGGGTTC-------------------------------------AGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.112000000000000000000000000000011000000000000000000000000000000000
..............................................................................................TCATTTTTAATGGGTTC-------------------------------------AGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000001010000000000000000000000000000000
.......................................................................................TT-ATACTCATTTTTAATGGGTTC-------------------------------------AGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.071000000000000000000000000000000010000000000000000000000000000000
...........................................................................................TACTCATTTTTAATGGGTTC-------------------------------------AGGGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.061000000000000000000000000000000000000100000000000000000000000000
........................................................................................T-ATACTCATTTTTAATGGGTTC-------------------------------------AGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.061000000000000000000000000000000100000000000000000000000000000000
....................................................................................................TTAATGGGTTC-------------------------------------AGGGTATAAAAA-------AAA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
...........................CGGAGATGCTTCCTTCTGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
......................................................TACATTTGGATTTTGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010000000000000000000000000000000000000000000000000000000000
..............................................................................................TCATTTTTAATGGGTTC-------------------------------------AGGGTATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................................................TCATTTTTAATGGGTTC-------------------------------------AGGGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
.....................TAGGGTCGGAGATGCTTCCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000001000000000000000000000000
..............................................................................................TCATTTTTAATGGGTTC-------------------------------------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................TAATGGGTTC-------------------------------------AGGGTATAAAAA-------AAA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000100000000000000000000000000000
..........................TCGGAGATGCTTCCTTCTGCCTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...............................................TGTTACATACATTTGGATTTTGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
TGAATATA----TATACTTTGTGGGATCTGCCACGCCTCCTTCTGCCTGTTACATACTTTT--------AACAAAACTATTATACCCTGATTTCCCATTTTCAAAGGGTTC-------------------------------------AGGGTATAACAA-------GTAAGA-------AG------------------ACTCTAGTC----------------G------A-----GAC----------------------AGCTCGACTATGAGATC---------------CCC------------------------------------------------------------------------------T------------------------GACAAAACCATTATACC------------------------------------------------------CT---------GA--------TTTCCCAT--------------------------------------------------------------------------------------------------------------------------------------------------AT--TCAATGGAT--TCAGGATATAACAGGGTAAGAAGACT-C--------TAGTCGA--------------GACT------GSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................TTTGTGGGATCTGCCACGCCTCCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.503016200120
.................TTTGTGGGATCTGCCACGCCTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.90181400040
.................TTTGTGGGATCTGCCACGCCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.5511800030
.................TTTGTGGGATCTGCCACGCCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.306000060
.................TTTGTGGGATCTGCCACGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204200020
.................TTTGTGGGATCTGCCACGCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153210000
.................TTTGTGGGATCTGCCACGCCTCCTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.112200000
...............................................TGTTACATACTTTT--------AACAAAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.081000010
..................TTGTGGGATCTGCCACGCCTCCTTCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28170.061100000
...............ACTTTGTGGGATCTGCCACGCCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
.................TTTGTGGGATCTGCCACGCCTCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
..............TACTTTGTGGGATCTGCCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
..................TTGTGGGATCTGCCACGCCTCCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..........................................................TTT--------AACAAAACTATTATACCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.............................................................................................................................................................CAA-------GTAAGA-------AG------------------ACTCTAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
......TA----TATACTTTGTGGGATCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.................TTTGTGGGATCTGCCACGCCTCCTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
droGri2
AGATTATATATATGTACTTTATGGGTTCGGAGATGCTTCCTTCTGCATGTTACATACAGTT-------GGTCAAAAGTTGTATACCCTTTATACCAATTTTTAGCGGGTTC-------------------------------------AGGGTATAAAAA-------TAT-GT-------TG----------------------A---------------------------AAT---TAGTTCG-------------------------CTCTAATATACTAAAGCCAAAAGAATCC---CATT------TA--------------------------------------------------------------------------------TGTTCTTC----------------------------------------------------------------------ACT---------CA--------TTTATCATTTTG----------------------------------------------------------------------------------------------------------TTTAT-----ATTCC---------------------ATTTCATTT---------------------------------------------------------------------AATTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AGAATATA----TATTCTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-------GACCCAAATTATAATACCCTCT-------------GC-----A-------------------------------------AGGGTATAAAAA-------GAT-GT-------TA----------------------AATTC----------------GAATGG-ACTACTGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGAA----------TGCCTTCGAACATCTCAAATCGGCACTAGTAAATCCGAATTTATTA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATACCCAG---------------------ATTTCAGCAAAGAATTTTG--CATAATAACGGATGCAA--------------------------------------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................ACACTTTT-------GACCCAAATTATAATACCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.111010000
..............................................................................................................................................................................................................................................GAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAGAA----------TGCCTTCGAACATC..........................................................................................................................................................................................................................................................................................................25110.091100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATACCCAG---------------------ATTTCAGCAAAGAA.....................................................................29150.071100000
............................................CTGCGTTGCACACTTTT-------GACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.071010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAATTTATTA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATACCCAG---------------------ATTT...............................................................................27180.061010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCCGAATTTATTA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATACCCAG---------------------AT.................................................................................29180.061010000
....................................CTCCTTCACTGCGTTGCACACTTTT-------GACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000001
......TA----TATTCTTTATAGGGTCGGAGATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000
....TATA----TATTCTTTATAGGGTCGGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
..............TTCTTTATAGGGTCGGAGATGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.............................................TGCGTTGCACACTTTT-------GACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
............TATTCTTTATAGGGTCGGAGATGTCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
droBip1
AGAATATA----TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-------GACCAAAATTATAATACCCTCT-------------GC-----AAGGGTAAAAAACATATATTTAAATGTTTATTATGTATAATCTATAAAAG-------TATTGA-------AA-----------------T----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTGCAATCTTCGCCC-----------------------------------------------------------AATCCCAAGT---------AAT--------TT--------G----------------------------------------------------------------------------------------------------------CCTTT-----GCCAC---------------------ATTATAGTTAGG----------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
AGAATATA----TATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCT-------GACTGAAATTATAATACCCTG---------------C-----A-------------------------------------AGGGTATAAAAA-------AGA-GC-------TA----------------------AATTT----------------GA-----A-GA------------------------------------------CAG--------TCG---TTTTGTTGCTGACAGATGTGTTTCAGAACTCGATCCTGCCCATT------------------------------------------------------------------------------------------------------------------------------------------------ATT--------AT----------------------------------------------------------------------------------------------------------A------------------------------------------------CAACTCCGGG-------CTTGTCATGGGATGCGA-------------TGTT--------------AAAGACT---A-CCSizeHit CountTotal NormTotal
No Reads
droFic1
AGAATATA----TATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCT-------GACTGAAATTATAATACCCTT-TTGCTC------TGC-----A-------------------------------------AGGGTATAAAAA-------CAATGA-------CG-------------A--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATGATGAAAACAAAATTATAATGTTTGCCAAAATTTCTAT--------------------------------------------------------ATA---------TA--------TTTT----------------------------------------------------------------------------------------------------------------CCAAT--------------------------CTTTCCTATGGCAGCTAAAAA----------------------------------------------------------------AATAASizeHit CountTotal NormTotal
No Reads
droEle1
AGAATATA----TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCAAACTTCT-------GACTGAAATTATAATACCCTCT-------------GC-----AAGGGTATAAAA-ATGTATTTGAATGGCACCAAAGTGTTA-------------------------------------------------------------------------------------------------------------------------------------------------TTC---CATTGACTTCTGTGTTTTAAATACC--TCTAACTCATTAACTTTATTTCTGTTTTGTTTCAGGTGGCAGTGGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTGGAGGCAGTGG-CGGCGGAGGAGGCGGC--------------GGCG------GSizeHit CountTotal NormTotal
No Reads
droRho1
AGAATATA----TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTT-------GACCAAAATTATAATACCCTCT-------------GC-----A-------------------------------------AGGGTATAAATA-------TGC----------TA----------------------CAATT----------------TGTTG-AAGTGCA---------------------------------------------------GTT------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCCAACGCCGCATTCGTTTTTTATGGTTTTGATTTT-----GATTTATTTGTGGTTCGATTGTCAATCGGACGGTGA-------------T------G-----ATGAT-TAATTGCGACGGT--------------GAATGCC---A-ATSizeHit CountTotal NormTotal
No Reads
droBia1
AGAATATA----TATACTTTATGGGGTCGGAAACTCTTCCTTCTACCTATTACATACTTTC-------CGACGGAACTAGTAATCCCTT-TTAGTC------TACCAGTAA-------------------------------------CAGGTATAAGAA-------GGGTGC-------CAAAATCAAAATTA-------------------------------------AA-GA------------------------------------------AAA--------ATC------------T------TA-----------------------------------------------------------------------------------TGTACACC-------------------------------------------------------------------GAAAATATATATTTTTTTTTAT-----------------------------------------------------------------------------------------TTTTTCC--------------------CCGAT--------------------------AGTTCCTATGGGAGCTA-------------T---------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droTak1
AGAATATA----TATACTTTATGGGGTCGGAAACGCTTTCTTCTAGCTGTTACATACTTTT-------GCACGAATCTAGTATACCCTT-TTACTC------TACGAGTAA-------------------------------------CGGGTATAACTA-------GGAAGA-------A------------------CGCTATAGTC----------------G------AGT----------------------------TCCTTGACTATCAGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------CG--------TTTCTCAGCTAGTAGAATTGCTAGGGAAATGGAGAAATGCAAGCA-------------------------------------ACAAAGCGA------------------------------------------------------------------------------------------------------------------------AAGCAGCAATGCG--------ACTGTSizeHit CountTotal NormTotal
No Reads
droEug1
AGAGTAAA----TATATTTTATAGGGTCGGAATCGCTTCCTTCTATCTGTTACATTCTTTT-------CAACGAATCTAGTATACCCTT-TTACTC------TAGGAGTAA-------------------------------------CGGGTATAATAAAACCAACA----ACGGG---AA-----------------CGGTA-------G-AAATTCCCTTCA-------C-----CCC----------------------TTCAAGAGAAGAGA-AGA--------ATC------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAC-----------------------------------------------------------------------------------------CTGCACC--------------------GC--------------------------------------GAGAGCGA----------------CGACGGCAACAGCGA-CGGCAGCAGCAGCGAA--------------GGCA------ASizeHit CountTotal NormTotal
No Reads
dm3
AGAATATA----TATACTCTACATGGTCGGAAACACTTCCTTCTCCCTGTTTC----------------AACGAATCTAGTATACACTT-TTACTC------TACAAGTAA-------------------------------------CGGCTATACCAT-----------------------------------------------------------------TGTTG-AAGTT---TATTAAATCAATGAATCGACGGTTTTTTCAGCTT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCTTTTGG------ATCAACTACAATCTCGGCTA--A----------TGCCTGTGGCGACACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCG----------------------GCGGATGATGGATTCGGTAACGATGAC--------------------GATGATTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................................................................................................................................................................................................................................................................................................................................................................................TA--A----------TGCCTGTGGCGACACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCG----------------------.......................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGATTCGGTAAC..................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................AGCTT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCTTTTGG------.........................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000020000000000000000000000000
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........................................................................................................................................................................................................................................................................TTTCAGCTT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCT....................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................GCTATACCAT-----------------------------------------------------------------TGTTG-AAGTT---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................GCTATACCAT-----------------------------------------------------------------TGTTG-AAGTT---TATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................T-TTACTC------TACAAGTAA-------------------------------------CGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000002000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACAATCTCGGCTA--A----------T.......................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG----------------------GCGGATGATGGATTCG.......................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
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..........................................................................................................................................................................................................................................................................TCAGCTT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCT....................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001100010000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................TT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCTTTTGG------ATCAA....................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...............................AACACTTCCTTCTCCCTGTTTC----------------AACGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG----------------------GCGGATGATGGATTCGG......................................2114.0040000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CTT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCTTTTG................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CGGCTA--A----------TGCCTGTGGCGACA..........................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................G-AAGTT---TATTAAATCAATGAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ATCAATGAATCGACGGTTTTTTCAGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGATTCGGTAACGATGAC--------------------GATGAT..2814.0040000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATACTCTACATGGTCGGAAACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCG----------------------GCGGATGATGGA...........................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGCTT-GGGGA--------------------------------------------------------------------------------------GGTAGTGCTTTTGG------A........................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000
.........................................TCTCCCTGTTTC----------------AACGAATCTAGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGAATATA--TATATACTTTATATAGTCGGACACGCTTCCTTCTGCTTGTTACATACTTTT-------CAACGAAGCTAGTATACC-TC-CTACTC------CACGAGTCA-------------------------------------CGGGTATAATCCAAAGAAT----ACCTGGATGCAAAGCCAAAGTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTTAGAAGAATGTCGGCAGTCAGTAGATAATACAATTT---------------------------------------------------TCATTTA-----CACCC---------------------ACTTCA-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....ATA--TATATACTTTATATAGTCGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.00400000000010030000
.....ATA--TATATACTTTATATAGTCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24203.8076002000690005000000
.....ATA--TATATACTTTATATAGTCGGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300000000000030000
..........................................................TTT-------CAACGAAGCTAGTATACC-TC-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300201000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGAATGTCGGCAGTCAGTAGATAA....................................................................................................................................................................................2812.00200000000200000000
....TATA--TATATACTTTATATAGTCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2561.671000000070210000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTAGAAGAATGTCGGCAGTCAGT..........................................................................................................................................................................................2611.00100100000000000000
...ATATA--TATATACTTTATATAGTCGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
............TATACTTTATATAGTCGGACACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
....TATA--TATATACTTTATATAGTCGGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAAGAATGTCGGCAGTCAGTAGA.......................................................................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................T----ACCTGGATGCAAAGCCAAAGTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C....................................................................................................................................................................................................................2611.00100000000100000000
.....ATA--TATATACTTTATATAGTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.9018000000100070100000
.....................................TCCTTCTGCTTGTTACATACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.88700000020500000000
.........................................TCTGCTTGTTACATACTTTT-------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.60300000000300000000
....................................TTCCTTCTGCTTGTTACATACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.57400010000300000000
.....ATA--TATATACTTTATATAGTCGGACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000000010000
..........................................................TTT-------CAACGAAGCTAGTATACC-TC-TA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
.....ATA--TATATACTTTATATAGTCGGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33100000000000010000
..........................................................TTT-------CAACGAAGCTAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1770.29200000000002000000
.........................................TCTGCTTGTTACATACTTTT-------CAACGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.20100000000010000000
...ATATA--TATATACTTTATATAGTCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000000000010000
..........................................................TTT-------CAACGAAGCTAGTATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.14100000000001000000
........................................TTCTGCTTGTTACATACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13100000010000000000
..........TATATACTTTATATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
...........ATATACTTTATATAGTCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000000000
droSec2
AGAATATA--TATATACTTTATATAGTCGGACACGCATCCTTCTGCTTGTTACATACTTTT-------CAACGAAGCTAGTATACC-TC-TTACTC------CACGAGTCA-------------------------------------CGGGTATTACCTTAAGGAT----CCACGGATGCATAGCCAAAGTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGTTAGAAGAATGTCGGCAGTCAGTAGATAATACAATTT---------------------------------------------------TCATTTA-----CACCC---------------------ACTTCA-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....ATA--TATATACTTTATATAGTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020020
...............................................TGTTACATACTTTT-------CAACGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001
droYak3
AGAATATA----TATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTT-------CAACGAATCTAGTATACCCTT-TTACTC------TACGAGTAA-------------------------------------CGGGTATAAATA-------TTGAGA--------A----------------------TAGCC----------------AAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTATGGTACACTTTTCAGGGTGAGGCATACGGAAAAGCCAACAC-----------------------CTCTC-----GTCCC---------------------ATTTAAGCTG------------------------------------------------------------------------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AGAATATACATATATACTTTATATGGTCGGAAACGATTCCTTCTGCCTGTTACATACTTGT-------CAACGAATCTAGTATACCCTT-TTATTA------TA----TAA-------------------------------------CGGGTATAAATA-------TAAAGG-------AA-----------------A----A-----------------------GTG-AGTAAAGAGTTCG----------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------ACCCGTAAAG---------ATT--------TT----------------------------------------------------------------------------------------------------------ATAG-----CTTTG-----CGCTC---------------------ATTTAAATTGAATG-------CATA--------------------------------------------------------ACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..AATATACATATATACTTTATATGGTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.2520000002

Generated: 06/08/2015 at 04:54 PM