dpe_191

CAGGTTGCTAGCCTGCCATTTCCCTTTTGCTGTCCGCTCGCGTGTGCTTTTAACAGGATGCCCGTCGGTTGGAGCAGCCTTTTGCGTCCGTTATAAAGCGCCCTCTGGCGGAGGGTAGTCGCCTGGCGGCTCCGGTAGATCTGCGC *********************************(((.....(((((((((((.((((((.....(((((...)))))....)))))))))).))))))).....)))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V111 male body	V042 embryo	V057 head
..................................................TAACAGGATGCCCGTCGGTTGGAGC.......................................................................	25	0	1	78.00	78	53	8	10	7	0
..................................................TAACAGGATGCCCGTCGGTTGGAG........................................................................	24	0	1	47.00	47	44	1	2	0	0
..................................................TAACAGGATGCCCGTCGGTTGGA.........................................................................	23	0	1	42.00	42	22	13	4	3	0
..................................................TAACAGGATGCCCGTCGGTTGG..........................................................................	22	0	1	19.00	19	16	3	0	0	0
..................................................TAACAGGATGCCCGTCGGTTG...........................................................................	21	0	1	10.00	10	10	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGCA......................................................................	26	0	1	9.00	9	7	0	2	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGCAG.....................................................................	27	0	1	7.00	7	1	0	6	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGT.......................................................................	25	1	1	5.00	5	2	3	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAGC.......................................................................	24	0	1	5.00	5	5	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGG..........................................................................	21	0	1	4.00	4	4	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGA.........................................................................	22	0	1	4.00	4	4	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAGCA......................................................................	25	0	1	3.00	3	3	0	0	0	0
......................................................................................TCCGTTATAAAGCGCCCTCTGGCGG...................................	25	0	4	2.50	10	10	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTT............................................................................	20	0	1	2.00	2	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGA..........................................................................	22	1	1	2.00	2	0	2	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAG........................................................................	23	0	1	2.00	2	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGT.............................................................................	19	0	1	2.00	2	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAA........................................................................	24	1	1	2.00	2	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAAA.......................................................................	25	2	1	2.00	2	1	1	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGCGA.....................................................................	27	2	1	1.00	1	1	0	0	0	0
..................................................TAACAGGAGGCCCGTCGGTTGGAGC.......................................................................	25	1	1	1.00	1	1	0	0	0	0
..................................................TAACGGGAGGCCCGTCGGTTGGA.........................................................................	23	2	1	1.00	1	1	0	0	0	0
..................................................TAACAGGACGCCCGTCGGTTGGA.........................................................................	23	1	1	1.00	1	1	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGCAGC....................................................................	28	0	1	1.00	1	1	0	0	0	0
..................................................TAACAGGAGGCCCGTCGGTTG...........................................................................	21	1	1	1.00	1	1	0	0	0	0
..................................................TAACAGGATCCCCGTCGGTTGGAGCA......................................................................	26	1	1	1.00	1	1	0	0	0	0
.....TGCTAGCCTGCCATTTCCCTTTTGCTG..................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..................................................TAACAGGATGCCCGTCTGTTGGAGC.......................................................................	25	1	1	1.00	1	0	1	0	0	0
...............................................TTTTAACAGGATGCCCGTCGGTTGGA.........................................................................	26	0	1	1.00	1	1	0	0	0	0
..................................................TAACAGGAGGCCCGTCGGTTGGAGCTA.....................................................................	27	3	1	1.00	1	1	0	0	0	0
.....................................................CAGGATGCCCGTCTGTTGGAG........................................................................	21	1	1	1.00	1	0	1	0	0	0
..................................................GAACAGGATGCCCGTCGGTTGGAGC.......................................................................	25	1	1	1.00	1	1	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAAC.......................................................................	25	1	1	1.00	1	1	0	0	0	0
..........................................TGTGCTTTTAACAGGATGCCCGTCGG..............................................................................	26	0	1	1.00	1	1	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAA........................................................................	23	1	1	1.00	1	1	0	0	0	0
................................................................TCGGTTGGAGCAGCCTTTTGCGTC..........................................................	24	0	1	1.00	1	1	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTA............................................................................	20	1	1	1.00	1	1	0	0	0	0
.................................................TTAACAGGATGCCCGTCGGTTGGAGCA......................................................................	27	0	1	1.00	1	1	0	0	0	0
......................................CGCGTGTGCTTTTAACAGGATGCC....................................................................................	24	0	1	1.00	1	1	0	0	0	0
.................................................TTAACAGGATGCCCGTCGGTTGG..........................................................................	23	0	1	1.00	1	1	0	0	0	0
..............................TGTCCGCTCGCGTGTGCTTTTAACAGGA........................................................................................	28	0	2	1.00	2	1	1	0	0	0
...................................................AACAGGATGCCCGTCGGTTG...........................................................................	20	0	1	1.00	1	1	0	0	0	0
......................................................................................TCCGTTATAAAGCGCCCTCTGGC.....................................	23	0	4	0.75	3	3	0	0	0	0
......................................................................................TCCGTTATAAAGCGCCCTCTGGCGGAGG................................	28	0	4	0.75	3	3	0	0	0	0
........................TTTTGCTGTCCGCTCGCGTGTGC...................................................................................................	23	0	5	0.60	3	3	0	0	0	0
........................TTTTGCTGTCCGCTCGCGTGTG....................................................................................................	22	0	5	0.60	3	2	0	0	1	0
........................................................................................................GTGGCGGAGGGTAGTCGCC.......................	19	1	2	0.50	1	1	0	0	0	0
...................................GCTCGCGTGTGCTTTTAACAGGATG......................................................................................	25	0	2	0.50	1	0	1	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGG.........................................................................	23	1	2	0.50	1	0	1	0	0	0
..................................................TAAAAGGATGACCGTCGGCTGGAG........................................................................	24	3	2	0.50	1	0	0	0	1	0
...........................................................................................................GCGGAGGGTAGTCGCCTGGCGG.................	22	0	2	0.50	1	1	0	0	0	0
.....................................................................................GTCCGTTATAAAGCGCCCTCTGGCGG...................................	26	0	4	0.50	2	2	0	0	0	0
...................................GCTCGCGTGTGCATTTAACAGGATG......................................................................................	25	1	2	0.50	1	0	1	0	0	0
.......................................................................................................TCTGGCGGAGGGTAGTCGCCT......................	21	0	2	0.50	1	1	0	0	0	0
...........................................................................................................................TGGCGGCTCCGGTAGATCTGCGC	23	0	2	0.50	1	1	0	0	0	0
....................TCCCTTTTGCTGTCCGCTCGCGTG......................................................................................................	24	0	5	0.40	2	2	0	0	0	0
..........................................................TGCCCGTCGGTTGGAGCAGCCTTT................................................................	24	0	3	0.33	1	1	0	0	0	0
..........................................................................................................................CTGGCGGCTCCGGTAGATCTGC..	22	0	3	0.33	1	0	1	0	0	0
......................................................................................TCCGTTATCAAGCGCCCTCTGGCGG...................................	25	1	4	0.25	1	1	0	0	0	0
..................................................................................TGCGTCCGTTATAAAGCGCCCTCTGGCGG...................................	29	0	4	0.25	1	1	0	0	0	0
......................................................................................TCCGTTATAAAACGCCCTCTGGCGG...................................	25	1	4	0.25	1	1	0	0	0	0
.......................................................................................CCGTTATAAAGCGCCCTCTGGCGG...................................	24	0	4	0.25	1	1	0	0	0	0
...................................................................................GCGTCCGTTATAAAGCGCCCTCT........................................	23	0	4	0.25	1	1	0	0	0	0
...............................................................................TTTTGCGTCCGTTATAAAGCGCCCT..........................................	25	0	4	0.25	1	1	0	0	0	0
......................................................................................TCCGTTATAAAGCGCCCTCTGGCCGAGG................................	28	1	4	0.25	1	1	0	0	0	0
......................................................................................TCCGTTATAAAGCGCCCTCTGGCGGA..................................	26	0	4	0.25	1	1	0	0	0	0
................................................................................TTTGCGTCTGTTATAAAGCGCCCTC.........................................	25	1	4	0.25	1	1	0	0	0	0
................................................................................TTTGCGTCCGTTATAAAGCGCCCTCTG.......................................	27	0	4	0.25	1	1	0	0	0	0
...........................................................................................TATAAAGCGCCCTCTGGCGGAGG................................	23	0	4	0.25	1	1	0	0	0	0
..................................................................................TGCGTCCGTTATAAAGCGCCCTCTG.......................................	25	0	4	0.25	1	1	0	0	0	0
.......................................................................................CCGTTATAAAGCGCCCTCTG.......................................	20	0	4	0.25	1	1	0	0	0	0
................................................................................TTTGCGTCCGTTATAAAGCGCCCTCT........................................	26	0	4	0.25	1	1	0	0	0	0
.....................................................................................GTCCGTTATAAAGCGCCCTCTGG......................................	23	0	4	0.25	1	1	0	0	0	0
.....................................................................................GTCCGTTATAAAGCGCCCTCTGGC.....................................	24	0	4	0.25	1	1	0	0	0	0
.........................TTTGCTGTCCGCTCGCGTG......................................................................................................	19	0	5	0.20	1	1	0	0	0	0
...................TTCCCTTTTGCTGTCCGCTCGC.........................................................................................................	22	0	5	0.20	1	1	0	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGCT............................................................................................................	25	0	5	0.20	1	1	0	0	0	0
...................TTCCCTTTTGCTGTCCGCTCGCGTG......................................................................................................	25	0	5	0.20	1	1	0	0	0	0
.........................TTTGCTGTCCGCTCGCGTGTGCTT.................................................................................................	24	0	5	0.20	1	1	0	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGCTC...........................................................................................................	26	0	5	0.20	1	1	0	0	0	0
..................TTTCCCTTGTGCTGTCCGCTCG..........................................................................................................	22	1	5	0.20	1	1	0	0	0	0
.......................................................................................................TCTGGCGGAGGGTAGTCA.........................	18	1	5	0.20	1	0	1	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGCTCG..........................................................................................................	27	0	5	0.20	1	1	0	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGC.............................................................................................................	24	0	5	0.20	1	1	0	0	0	0
...................TTCCCTTTGGCTGTCCGCTCGCGTA......................................................................................................	25	2	6	0.17	1	1	0	0	0	0
..............................................................................................................GTGGGTAGTCGGCGGGCGGC................	20	3	20	0.05	1	0	0	0	0	1

CAGGTTGCTAGCCTGCCATTTCCCTTTTGCTGTCCGCTCGCGTGTGCTTTTAACAGGATGCCCGTCGGTTGGAGCAGCCTTTTGCGTCCGTTATAAAGCGCCCTCTGGCGGAGGGTAGTCGCCTGGCGGCTCCGGTAGATCTGCGC
***********************************(((.....(((((((((((.((((((.....(((((...)))))....)))))))))).))))))).....)))..***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M042
female body

M021
embryo

V111
male body

V042
embryo

V057
head

..................................................TAACAGGATGCCCGTCGGTTGGAGC.......................................................................

78.00

..................................................TAACAGGATGCCCGTCGGTTGGAG........................................................................

47.00

..................................................TAACAGGATGCCCGTCGGTTGGA.........................................................................

42.00

..................................................TAACAGGATGCCCGTCGGTTGG..........................................................................

19.00

..................................................TAACAGGATGCCCGTCGGTTG...........................................................................

10.00

..................................................TAACAGGATGCCCGTCGGTTGGAGCA......................................................................

9.00

..................................................TAACAGGATGCCCGTCGGTTGGAGCAG.....................................................................

7.00

..................................................TAACAGGATGCCCGTCGGTTGGAGT.......................................................................

5.00

...................................................AACAGGATGCCCGTCGGTTGGAGC.......................................................................

5.00

...................................................AACAGGATGCCCGTCGGTTGG..........................................................................

4.00

...................................................AACAGGATGCCCGTCGGTTGGA.........................................................................

4.00

...................................................AACAGGATGCCCGTCGGTTGGAGCA......................................................................

3.00

......................................................................................TCCGTTATAAAGCGCCCTCTGGCGG...................................

2.50

..................................................TAACAGGATGCCCGTCGGTT............................................................................

2.00

..................................................TAACAGGATGCCCGTCGGTTGA..........................................................................

2.00

...................................................AACAGGATGCCCGTCGGTTGGAG........................................................................

2.00

..................................................TAACAGGATGCCCGTCGGT.............................................................................

2.00

..................................................TAACAGGATGCCCGTCGGTTGGAA........................................................................

2.00

..................................................TAACAGGATGCCCGTCGGTTGGAAA.......................................................................

2.00

..................................................TAACAGGATGCCCGTCGGTTGGAGCGA.....................................................................

1.00

..................................................TAACAGGAGGCCCGTCGGTTGGAGC.......................................................................

1.00

..................................................TAACGGGAGGCCCGTCGGTTGGA.........................................................................

1.00

..................................................TAACAGGACGCCCGTCGGTTGGA.........................................................................

1.00

..................................................TAACAGGATGCCCGTCGGTTGGAGCAGC....................................................................

1.00

..................................................TAACAGGAGGCCCGTCGGTTG...........................................................................

1.00

..................................................TAACAGGATCCCCGTCGGTTGGAGCA......................................................................

1.00

.....TGCTAGCCTGCCATTTCCCTTTTGCTG..................................................................................................................

1.00

..................................................TAACAGGATGCCCGTCTGTTGGAGC.......................................................................

1.00

...............................................TTTTAACAGGATGCCCGTCGGTTGGA.........................................................................

1.00

..................................................TAACAGGAGGCCCGTCGGTTGGAGCTA.....................................................................

1.00

.....................................................CAGGATGCCCGTCTGTTGGAG........................................................................

1.00

..................................................GAACAGGATGCCCGTCGGTTGGAGC.......................................................................

1.00

..................................................TAACAGGATGCCCGTCGGTTGGAAC.......................................................................

1.00

..........................................TGTGCTTTTAACAGGATGCCCGTCGG..............................................................................

1.00

...................................................AACAGGATGCCCGTCGGTTGGAA........................................................................

1.00

................................................................TCGGTTGGAGCAGCCTTTTGCGTC..........................................................

1.00

..................................................TAACAGGATGCCCGTCGGTA............................................................................

1.00

.................................................TTAACAGGATGCCCGTCGGTTGGAGCA......................................................................

1.00

......................................CGCGTGTGCTTTTAACAGGATGCC....................................................................................

1.00

.................................................TTAACAGGATGCCCGTCGGTTGG..........................................................................

1.00

..............................TGTCCGCTCGCGTGTGCTTTTAACAGGA........................................................................................

1.00

...................................................AACAGGATGCCCGTCGGTTG...........................................................................

1.00

......................................................................................TCCGTTATAAAGCGCCCTCTGGC.....................................

0.75

......................................................................................TCCGTTATAAAGCGCCCTCTGGCGGAGG................................

0.75

........................TTTTGCTGTCCGCTCGCGTGTGC...................................................................................................

0.60

........................TTTTGCTGTCCGCTCGCGTGTG....................................................................................................

0.60

........................................................................................................GTGGCGGAGGGTAGTCGCC.......................

0.50

...................................GCTCGCGTGTGCTTTTAACAGGATG......................................................................................

0.50

..................................................TAACAGGATGCCCGTCGGTTGGG.........................................................................

0.50

..................................................TAAAAGGATGACCGTCGGCTGGAG........................................................................

0.50

...........................................................................................................GCGGAGGGTAGTCGCCTGGCGG.................

0.50

.....................................................................................GTCCGTTATAAAGCGCCCTCTGGCGG...................................

0.50

...................................GCTCGCGTGTGCATTTAACAGGATG......................................................................................

0.50

.......................................................................................................TCTGGCGGAGGGTAGTCGCCT......................

0.50

...........................................................................................................................TGGCGGCTCCGGTAGATCTGCGC

0.50

....................TCCCTTTTGCTGTCCGCTCGCGTG......................................................................................................

0.40

..........................................................TGCCCGTCGGTTGGAGCAGCCTTT................................................................

0.33

..........................................................................................................................CTGGCGGCTCCGGTAGATCTGC..

0.33

......................................................................................TCCGTTATCAAGCGCCCTCTGGCGG...................................

0.25

..................................................................................TGCGTCCGTTATAAAGCGCCCTCTGGCGG...................................

0.25

......................................................................................TCCGTTATAAAACGCCCTCTGGCGG...................................

0.25

.......................................................................................CCGTTATAAAGCGCCCTCTGGCGG...................................

0.25

...................................................................................GCGTCCGTTATAAAGCGCCCTCT........................................

0.25

...............................................................................TTTTGCGTCCGTTATAAAGCGCCCT..........................................

0.25

......................................................................................TCCGTTATAAAGCGCCCTCTGGCCGAGG................................

0.25

......................................................................................TCCGTTATAAAGCGCCCTCTGGCGGA..................................

0.25

................................................................................TTTGCGTCTGTTATAAAGCGCCCTC.........................................

0.25

................................................................................TTTGCGTCCGTTATAAAGCGCCCTCTG.......................................

0.25

...........................................................................................TATAAAGCGCCCTCTGGCGGAGG................................

0.25

..................................................................................TGCGTCCGTTATAAAGCGCCCTCTG.......................................

0.25

.......................................................................................CCGTTATAAAGCGCCCTCTG.......................................

0.25

................................................................................TTTGCGTCCGTTATAAAGCGCCCTCT........................................

0.25

.....................................................................................GTCCGTTATAAAGCGCCCTCTGG......................................

0.25

.....................................................................................GTCCGTTATAAAGCGCCCTCTGGC.....................................

0.25

.........................TTTGCTGTCCGCTCGCGTG......................................................................................................

0.20

...................TTCCCTTTTGCTGTCCGCTCGC.........................................................................................................

0.20

.............TGCCATTTCCCTTTTGCTGTCCGCT............................................................................................................

0.20

...................TTCCCTTTTGCTGTCCGCTCGCGTG......................................................................................................

0.20

.........................TTTGCTGTCCGCTCGCGTGTGCTT.................................................................................................

0.20

.............TGCCATTTCCCTTTTGCTGTCCGCTC...........................................................................................................

0.20

..................TTTCCCTTGTGCTGTCCGCTCG..........................................................................................................

0.20

.......................................................................................................TCTGGCGGAGGGTAGTCA.........................

0.20

.............TGCCATTTCCCTTTTGCTGTCCGCTCG..........................................................................................................

0.20

.............TGCCATTTCCCTTTTGCTGTCCGC.............................................................................................................

0.20

...................TTCCCTTTGGCTGTCCGCTCGCGTA......................................................................................................

0.17

..............................................................................................................GTGGGTAGTCGGCGGGCGGC................

0.05

GTCCAACGATCGGACGGTAAAGGGAAAACGACAGGCGAGCGCACACGAAAATTGTCCTACGGGCAGCCAACCTCGTCGGAAAACGCAGGCAATATTTCGCGGGAGACCGCCTCCCATCAGCGGACCGCCGAGGCCATCTAGACGCG *********************************(((.....(((((((((((.((((((.....(((((...)))))....)))))))))).))))))).....)))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo	V111 male body	V057 head
..........................................................................................................................GACCGCCGAGGCCATCTAGACGC.	23	0	3	3.33	10	10	0	0	0	0
.......................................................................CTCGTCGGAAAACGCAGGCAATA....................................................	23	0	1	3.00	3	0	3	0	0	0
.........................................................................................................................GGACCGCCGAGGCCATCTAGACGC.	24	0	3	2.33	7	6	0	0	1	0
..CCAACGATCGGACGGTAAAGGGAAA.......................................................................................................................	25	0	1	2.00	2	2	0	0	0	0
.....................................................GTCCTACGGGCAGCCAACCTCGT......................................................................	23	0	1	2.00	2	2	0	0	0	0
.....................................AGCGCACACGAAAATTGTCCTAC......................................................................................	23	0	2	1.50	3	3	0	0	0	0
........................................................................................................................CGGACCGCCGAGGCCATCTAGACGC.	25	0	3	1.33	4	4	0	0	0	0
.............................................................................................................................CGCCGAGGCCATCTAGACGC.	20	0	4	1.25	5	3	2	0	0	0
....................................................TGTCCTACGGGCAGCCAACCTCGT......................................................................	24	0	1	1.00	1	1	0	0	0	0
.ACCAACGATCGGACGGTAAAGGGAA........................................................................................................................	25	1	1	1.00	1	1	0	0	0	0
.......................................................................CTCGTCGGAAAACGCAGGCAATATT..................................................	25	0	1	1.00	1	0	1	0	0	0
...................................................TTGTCCTACGGGCAGCCAACCTCGT......................................................................	25	0	1	1.00	1	1	0	0	0	0
...CAACGATCGGACGGTAAAGGGAA........................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
...CAACGATCGGACGGTAAAGGGAAA.......................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................ACCGCCGAGGCCATCTAGACGC.	22	0	4	1.00	4	4	0	0	0	0
....................................GAGCGCACACGAAAATTGTCCTAC......................................................................................	24	0	2	1.00	2	2	0	0	0	0
.......................................................................CTCGTCGGAAAACGCAGGCAATATTT.................................................	26	0	1	1.00	1	0	1	0	0	0
....AACGATCGGACGGTAAAGGGA.........................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................................................................................................................CCGCCGAGGCCATCTAGACGC.	21	0	4	0.75	3	1	2	0	0	0
.........................................................................................................................GGACCGCCGAGGCCATCTAGACG..	23	0	3	0.67	2	2	0	0	0	0
..........CGGACGGTAAAGGGAAAACGACAG................................................................................................................	24	0	5	0.60	3	2	0	0	1	0
..GCAACGATCGGACGATAC..............................................................................................................................	18	3	20	0.60	12	5	0	1	0	6
.................................GGCGAGCGCACACGAAAATTG............................................................................................	21	0	2	0.50	1	1	0	0	0	0
...........................ACGACAGGCGAGCGCACACGAAAAT..............................................................................................	25	0	2	0.50	1	1	0	0	0	0
...................................CGAGCGCACACGAAAATTGTCCTAC......................................................................................	25	0	2	0.50	1	1	0	0	0	0
......................................GCGCACACGAAAATTGTCCTAC......................................................................................	22	0	2	0.50	1	0	0	1	0	0
.....................................................................................................................CAGCGGACCGCCGAGGCCATCTAGACGC.	28	0	3	0.33	1	1	0	0	0	0
.........................................................................................................................GGACCGCCGAGGCCTTCTAGACG..	23	1	3	0.33	1	1	0	0	0	0
..........................................................................................................................GACCGCCGAGGCCAACTAGACGC.	23	1	3	0.33	1	1	0	0	0	0
.........................................................................................................................GGACCGCCGAGGCCAGCTAGACGC.	24	1	3	0.33	1	1	0	0	0	0
................................................................................................................CCCATCAGCGGACCGCCGAGGCCAT.........	25	0	3	0.33	1	1	0	0	0	0
..........................................................................................................................GACCGCCGAGGCCATCTAGAC...	21	0	3	0.33	1	1	0	0	0	0
........................................................................................................................CGGACCGCCGAGGCCATCTAGACG..	24	0	3	0.33	1	1	0	0	0	0
........................................................................................................................CGGACCGCCGAGGCCATCTA......	20	0	3	0.33	1	1	0	0	0	0
.............................................................................................................................CGCCGAGGCCATCTAGACG..	19	0	4	0.25	1	0	1	0	0	0
......................................................................................AGGCAATATTTCGCGGGAGACC......................................	22	0	4	0.25	1	1	0	0	0	0
..........CGGACGGTAAAGGGAAAACGACAGG...............................................................................................................	25	0	5	0.20	1	1	0	0	0	0
.............ACGGTAAAGGGAAAACGACAGGC..............................................................................................................	23	0	5	0.20	1	1	0	0	0	0
..........CGGACGGTAAAGGGAAAACGACA.................................................................................................................	23	0	5	0.20	1	1	0	0	0	0
...........GGACGGTAAAGGGAAAACGACAGG...............................................................................................................	24	0	5	0.20	1	1	0	0	0	0
.............................................................................................ATTTCGCAGGAGACAGCCTT.................................	20	3	6	0.17	1	1	0	0	0	0
..........................................................................................................................GACCACCGGGGCTATCTAGA....	20	3	11	0.09	1	1	0	0	0	0
............................CGACAGGCGGGGGCACAC....................................................................................................	18	2	13	0.08	1	0	0	0	0	1
.TCCAACAAAAGGACGGTAAAG............................................................................................................................	21	3	17	0.06	1	1	0	0	0	0
..CCAACGATCGGACCATAC..............................................................................................................................	18	3	20	0.05	1	0	0	0	0	1

GTCCAACGATCGGACGGTAAAGGGAAAACGACAGGCGAGCGCACACGAAAATTGTCCTACGGGCAGCCAACCTCGTCGGAAAACGCAGGCAATATTTCGCGGGAGACCGCCTCCCATCAGCGGACCGCCGAGGCCATCTAGACGCG
***********************************(((.....(((((((((((.((((((.....(((((...)))))....)))))))))).))))))).....)))..***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M042
female body

M021
embryo

V042
embryo

V111
male body

V057
head

..........................................................................................................................GACCGCCGAGGCCATCTAGACGC.

3.33

.......................................................................CTCGTCGGAAAACGCAGGCAATA....................................................

3.00

.........................................................................................................................GGACCGCCGAGGCCATCTAGACGC.

2.33

..CCAACGATCGGACGGTAAAGGGAAA.......................................................................................................................

2.00

.....................................................GTCCTACGGGCAGCCAACCTCGT......................................................................

2.00

.....................................AGCGCACACGAAAATTGTCCTAC......................................................................................

1.50

........................................................................................................................CGGACCGCCGAGGCCATCTAGACGC.

1.33

.............................................................................................................................CGCCGAGGCCATCTAGACGC.

1.25

....................................................TGTCCTACGGGCAGCCAACCTCGT......................................................................

1.00

.ACCAACGATCGGACGGTAAAGGGAA........................................................................................................................

1.00

.......................................................................CTCGTCGGAAAACGCAGGCAATATT..................................................

1.00

...................................................TTGTCCTACGGGCAGCCAACCTCGT......................................................................

1.00

...CAACGATCGGACGGTAAAGGGAA........................................................................................................................

1.00

...CAACGATCGGACGGTAAAGGGAAA.......................................................................................................................

1.00

...........................................................................................................................ACCGCCGAGGCCATCTAGACGC.

1.00

....................................GAGCGCACACGAAAATTGTCCTAC......................................................................................

1.00

.......................................................................CTCGTCGGAAAACGCAGGCAATATTT.................................................

1.00

....AACGATCGGACGGTAAAGGGA.........................................................................................................................

1.00

............................................................................................................................CCGCCGAGGCCATCTAGACGC.

0.75

.........................................................................................................................GGACCGCCGAGGCCATCTAGACG..

0.67

..........CGGACGGTAAAGGGAAAACGACAG................................................................................................................

0.60

..GCAACGATCGGACGATAC..............................................................................................................................

0.60

.................................GGCGAGCGCACACGAAAATTG............................................................................................

0.50

...........................ACGACAGGCGAGCGCACACGAAAAT..............................................................................................

0.50

...................................CGAGCGCACACGAAAATTGTCCTAC......................................................................................

0.50

......................................GCGCACACGAAAATTGTCCTAC......................................................................................

0.50

.....................................................................................................................CAGCGGACCGCCGAGGCCATCTAGACGC.

0.33

.........................................................................................................................GGACCGCCGAGGCCTTCTAGACG..

0.33

..........................................................................................................................GACCGCCGAGGCCAACTAGACGC.

0.33

.........................................................................................................................GGACCGCCGAGGCCAGCTAGACGC.

0.33

................................................................................................................CCCATCAGCGGACCGCCGAGGCCAT.........

0.33

..........................................................................................................................GACCGCCGAGGCCATCTAGAC...

0.33

........................................................................................................................CGGACCGCCGAGGCCATCTAGACG..

0.33

........................................................................................................................CGGACCGCCGAGGCCATCTA......

0.33

.............................................................................................................................CGCCGAGGCCATCTAGACG..

0.25

......................................................................................AGGCAATATTTCGCGGGAGACC......................................

0.25

..........CGGACGGTAAAGGGAAAACGACAGG...............................................................................................................

0.20

.............ACGGTAAAGGGAAAACGACAGGC..............................................................................................................

0.20

..........CGGACGGTAAAGGGAAAACGACA.................................................................................................................

0.20

...........GGACGGTAAAGGGAAAACGACAGG...............................................................................................................

0.20

.............................................................................................ATTTCGCAGGAGACAGCCTT.................................

0.17

..........................................................................................................................GACCACCGGGGCTATCTAGA....

0.09

............................CGACAGGCGGGGGCACAC....................................................................................................

0.08

.TCCAACAAAAGGACGGTAAAG............................................................................................................................

0.06

..CCAACGATCGGACCATAC..............................................................................................................................

0.05

Species	Coordinate	ID	Alignment
droPer2	scaffold_792:7204-7349 +	dpe_191	CAGGTTGCTAGCCTGCCATTTCCCTTTTGCTGTCCGCTCGCGTGTGCTTTTAACAGGATGCCCGTCGGTTGGAGCAGCCTTT-------------TGCGTCCGTTATAAAGCGCCCTCTGGCGGAGGGTAGTCGCCTGGCGGCTCCGGTAGATCTGCGC
dp5	Unknown_group_452:9048-9206 +		CAGGTTGGTAGCCTGCTAATTCCCTTTTGCTGTCCGCTCGAGTATGCTTCTAACAGGATGGCCGTCGGTTGGGGCAGCCTTTTGCCCAAGCCATTTGCGTCCGTTATGAAGCGCTCTTTGTTGGGCGGTAGTCGCCTGGCGGCTCCGGTAGATCCGCGC
droWil2	scf2_1100000003774:267-273 -		CCGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_682:680-695 +		GAGTTTGCTTGCTTGC-----------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6482:67751-67806 -		TG-------------CAATGTCCGTCTTGCTGTCCGTCCGTCTGTCCGTCCGTCCGTCTGTCCGTCTGT------------------------------------------------------------------------------------------
droAna3	scaffold_13055:115393-115413 +		GT---CGCTTTCTCGCGTTTTCCC---------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000393827:752-770 +		G--GTCGCTATCTCGCTATTT------------------------------------------------------------------------------------------------------------------------------------------

Species

Coordinate

Alignment

droPer2

scaffold_792:7204-7349 +

dpe_191

CAGGTTGCTAGCCTGCCATTTCCCTTTTGCTGTCCGCTCGCGTGTGCTTTTAACAGGATGCCCGTCGGTTGGAGCAGCCTTT-------------TGCGTCCGTTATAAAGCGCCCTCTGGCGGAGGGTAGTCGCCTGGCGGCTCCGGTAGATCTGCGC

dp5

Unknown_group_452:9048-9206 +

CAGGTTGGTAGCCTGCTAATTCCCTTTTGCTGTCCGCTCGAGTATGCTTCTAACAGGATGGCCGTCGGTTGGGGCAGCCTTTTGCCCAAGCCATTTGCGTCCGTTATGAAGCGCTCTTTGTTGGGCGGTAGTCGCCTGGCGGCTCCGGTAGATCCGCGC

droWil2

scf2_1100000003774:267-273 -

CCGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------

droVir3

scaffold_682:680-695 +

GAGTTTGCTTGCTTGC-----------------------------------------------------------------------------------------------------------------------------------------------

droMoj3

scaffold_6482:67751-67806 -

TG-------------CAATGTCCGTCTTGCTGTCCGTCCGTCTGTCCGTCCGTCCGTCTGTCCGTCTGT------------------------------------------------------------------------------------------

droAna3

scaffold_13055:115393-115413 +

GT---CGCTTTCTCGCGTTTTCCC---------------------------------------------------------------------------------------------------------------------------------------

droBip1

scf7180000393827:752-770 +

G--GTCGCTATCTCGCTATTT------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CAGGTTGCTAGCCTGCCATTTCCCTTTTGCTGTCCGCTCGCGTGTGCTTTTAACAGGATGCCCGTCGGTTGGAGCAGCCTTT-------------TGCGTCCGTTATAAAGCGCCCTCTGGCGGAGGGTAGTCGCCTGGCGGCTCCGGTAGATCTGCGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................TAACAGGATGCCCGTCGGTTGGAGC....................................................................................	25	1	78.00	78	8	53	7	0	0	10
..................................................TAACAGGATGCCCGTCGGTTGGAG.....................................................................................	24	1	47.00	47	1	44	0	0	0	2
..................................................TAACAGGATGCCCGTCGGTTGGA......................................................................................	23	1	42.00	42	13	22	3	0	0	4
..................................................TAACAGGATGCCCGTCGGTTGG.......................................................................................	22	1	19.00	19	3	16	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTG........................................................................................	21	1	10.00	10	0	10	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGCA...................................................................................	26	1	9.00	9	0	7	0	0	0	2
..................................................TAACAGGATGCCCGTCGGTTGGAGCAG..................................................................................	27	1	7.00	7	0	1	0	0	0	6
..................................................TAACAGGATGCCCGTCGGTTGGAGT....................................................................................	25	1	5.00	5	3	2	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAGC....................................................................................	24	1	5.00	5	0	5	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGG.......................................................................................	21	1	4.00	4	0	4	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGA......................................................................................	22	1	4.00	4	0	4	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAGCA...................................................................................	25	1	3.00	3	0	3	0	0	0	0
...................................................................................................TCCGTTATAAAGCGCCCTCTGGCGG...................................	25	4	2.50	10	0	10	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTT.........................................................................................	20	1	2.00	2	0	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGA.......................................................................................	22	1	2.00	2	2	0	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAG.....................................................................................	23	1	2.00	2	0	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGT..........................................................................................	19	1	2.00	2	0	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAA.....................................................................................	24	1	2.00	2	0	2	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAAA....................................................................................	25	1	2.00	2	1	1	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGCGA..................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGAGCAGC.................................................................................	28	1	1.00	1	0	1	0	0	0	0
.....TGCTAGCCTGCCATTTCCCTTTTGCTG...............................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............................................TTTTAACAGGATGCCCGTCGGTTGGA......................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................TGTGCTTTTAACAGGATGCCCGTCGG...........................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTGGAA.....................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................TCGGTTGGAGCAGCCTTT-------------TGCGTC..........................................................	24	1	1.00	1	0	1	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTA.........................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................TTAACAGGATGCCCGTCGGTTGGAGCA...................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................................CGCGTGTGCTTTTAACAGGATGCC.................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................TTAACAGGATGCCCGTCGGTTGG.......................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................TGTCCGCTCGCGTGTGCTTTTAACAGGA.....................................................................................................	28	2	1.00	2	1	1	0	0	0	0
...................................................AACAGGATGCCCGTCGGTTG........................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................TCCGTTATAAAGCGCCCTCTGGC.....................................	23	4	0.75	3	0	3	0	0	0	0
...................................................................................................TCCGTTATAAAGCGCCCTCTGGCGGAGG................................	28	4	0.75	3	0	3	0	0	0	0
........................TTTTGCTGTCCGCTCGCGTGTGC................................................................................................................	23	5	0.60	3	0	3	0	0	0	0
........................TTTTGCTGTCCGCTCGCGTGTG.................................................................................................................	22	5	0.60	3	0	2	1	0	0	0
...................................GCTCGCGTGTGCTTTTAACAGGATG...................................................................................................	25	2	0.50	1	1	0	0	0	0	0
..................................................TAACAGGATGCCCGTCGGTTGGG......................................................................................	23	2	0.50	1	1	0	0	0	0	0
........................................................................................................................GCGGAGGGTAGTCGCCTGGCGG.................	22	2	0.50	1	0	1	0	0	0	0
..................................................................................................GTCCGTTATAAAGCGCCCTCTGGCGG...................................	26	4	0.50	2	0	2	0	0	0	0
....................................................................................................................TCTGGCGGAGGGTAGTCGCCT......................	21	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................TGGCGGCTCCGGTAGATCTGCGC	23	2	0.50	1	0	1	0	0	0	0
....................TCCCTTTTGCTGTCCGCTCGCGTG...................................................................................................................	24	5	0.40	2	0	2	0	0	0	0
..........................................................TGCCCGTCGGTTGGAGCAGCCTTT-------------................................................................	24	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................................CTGGCGGCTCCGGTAGATCTGC..	22	3	0.33	1	1	0	0	0	0	0
...............................................................................................TGCGTCCGTTATAAAGCGCCCTCTGGCGG...................................	29	4	0.25	1	0	1	0	0	0	0
....................................................................................................CCGTTATAAAGCGCCCTCTGGCGG...................................	24	4	0.25	1	0	1	0	0	0	0
................................................................................................GCGTCCGTTATAAAGCGCCCTCT........................................	23	4	0.25	1	0	1	0	0	0	0
...............................................................................TTT-------------TGCGTCCGTTATAAAGCGCCCT..........................................	25	4	0.25	1	0	1	0	0	0	0
...................................................................................................TCCGTTATAAAGCGCCCTCTGGCGGA..................................	26	4	0.25	1	0	1	0	0	0	0
................................................................................TT-------------TGCGTCCGTTATAAAGCGCCCTCTG.......................................	27	4	0.25	1	0	1	0	0	0	0
........................................................................................................TATAAAGCGCCCTCTGGCGGAGG................................	23	4	0.25	1	0	1	0	0	0	0
...............................................................................................TGCGTCCGTTATAAAGCGCCCTCTG.......................................	25	4	0.25	1	0	1	0	0	0	0
....................................................................................................CCGTTATAAAGCGCCCTCTG.......................................	20	4	0.25	1	0	1	0	0	0	0
................................................................................TT-------------TGCGTCCGTTATAAAGCGCCCTCT........................................	26	4	0.25	1	0	1	0	0	0	0
..................................................................................................GTCCGTTATAAAGCGCCCTCTGG......................................	23	4	0.25	1	0	1	0	0	0	0
..................................................................................................GTCCGTTATAAAGCGCCCTCTGGC.....................................	24	4	0.25	1	0	1	0	0	0	0
.........................TTTGCTGTCCGCTCGCGTG...................................................................................................................	19	5	0.20	1	0	1	0	0	0	0
...................TTCCCTTTTGCTGTCCGCTCGC......................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGCT.........................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
...................TTCCCTTTTGCTGTCCGCTCGCGTG...................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
.........................TTTGCTGTCCGCTCGCGTGTGCTT..............................................................................................................	24	5	0.20	1	0	1	0	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGCTC........................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
....................................................................................................................TCTGGCGGAGGGTAGTCA.........................	18	5	0.20	1	1	0	0	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGCTCG.......................................................................................................................	27	5	0.20	1	0	1	0	0	0	0
.............TGCCATTTCCCTTTTGCTGTCCGC..........................................................................................................................	24	5	0.20	1	0	1	0	0	0	0

dp5

CAGGTTGGTAGCCTGCTAATTCCCTTTTGCTGTCCGCTCGAGTATGCTTCTAACAGGATGGCCGTCGGTTGGGGCAGCCTTTTGCCCAAGCCATTTGCGTCCGTTATGAAGCGCTCTTTGTTGGGCGGTAGTCGCCTGGCGGCTCCGGTAGATCCGCGC

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droWil2

CCGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

GAGTTTGCTTGCTTGC-----------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

TG-------------CAATGTCCGTCTTGCTGTCCGTCCGTCTGTCCGTCCGTCCGTCTGTCCGTCTGT------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................TCCGTCTTGCTGTCCGTCCGT......................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droAna3

GT---CGCTTTCTCGCGTTTTCCC---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

G--GTCGCTATCTCGCTATTT------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dpe_191

scaffold_792:7254-7299 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.7	-26.4	-25.9