ID:

dpe_1888

 Coordinate:

scaffold_6:2036476-2036547 -

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -17.0 -16.7

Flybase annnotation

intron [Dper\GL12175-in]; CDS [Dper\GL12175-cds]; CDS [Dper\GL12175-cds]

No Repeatable elements found

Sense Strand Reads

TGACAGACGGCTCCGAGGATTGCCTGTACCTCAATGTCTACACAAAGAATGTGAGTGGTGATGATGATCAATATTGGGATATGCTTTTCTGACTAATAGGTTATCTGACTTAACTCACATAGTTATATCCCACCAAACCGATGCCAGTGATGGTCTGGATCTATGGCGGGGG

**************************************************(((((((((...(((((((..((((((...............)))))))))))))..)))..))))))..**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 M021

embryo

 V111

male body		 V057

head

 V050

head

 V042

embryo
................................................................................................TAGGTTATCTGACTTAACTCACAT.................................................... 24 0 1 210.00 210 183 25 0 1 1 0
................................................................................................TAGGTTATCTGACTTAACTCACA..................................................... 23 0 1 174.00 174 167 2 0 2 2 1
................................................................................................TAGGTTATCTGACTTAACTCAC...................................................... 22 0 1 40.00 40 37 1 0 0 2 0
................................................................................................TAGGTTATCTGACTTAACTCA....................................................... 21 0 1 26.00 26 23 0 0 1 1 1
................................................................................................TAGGTTATCTGACTTAACTCACAC.................................................... 24 1 1 20.00 20 20 0 0 0 0 0
..................................................GTGAGTGGTGATGATGATC....................................................................................................... 19 0 1 15.00 15 0 0 13 1 0 1
.................................................................................................AGGTTATCTGACTTAACTCACAT.................................................... 23 0 1 13.00 13 13 0 0 0 0 0
.................................................................................................AGGTTATCTGACTTAACTCACA..................................................... 22 0 1 13.00 13 13 0 0 0 0 0
................................................................................................TAGGTTATGTGACTTAACTCACA..................................................... 23 1 1 10.00 10 10 0 0 0 0 0
..................................................GTGAGTGGTGATGATGATCAATATTGG............................................................................................... 27 0 1 8.00 8 3 0 5 0 0 0
...............................................................................................ATAGGTTATCTGACTTAACTCACA..................................................... 24 0 1 7.00 7 2 5 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACT......................................................... 19 0 1 6.00 6 1 1 0 1 1 2
..................................................GTGAGTGGTGATGATGATCAATATT................................................................................................. 25 0 1 6.00 6 0 2 2 0 0 2
................................................................................................TAGGTTATCTGACTTAACTC........................................................ 20 0 1 6.00 6 4 1 1 0 0 0
...............................................................................................ATAGGTTATCTGACTTAACTCACAT.................................................... 25 0 1 6.00 6 5 1 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACATA................................................... 25 0 1 5.00 5 4 0 0 1 0 0
...............................................................................................ATAGGTTATCTGACTTAACTC........................................................ 21 0 1 4.00 4 2 2 0 0 0 0
..................................................GTGAGTGGTGATGATGATCA...................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0
..................................................GTGAGTGGTGATGATGATCAATAT.................................................................................................. 24 0 1 4.00 4 0 0 2 2 0 0
................................................................................................TAGGTTATGTGACTTAACTCA....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACATT................................................... 25 1 1 3.00 3 3 0 0 0 0 0
..................................................GTGAGTGGTGATGATGATCAAT.................................................................................................... 22 0 1 3.00 3 0 0 2 1 0 0
................................................................................................TAGGTTATGTGACTTAACTCACAT.................................................... 24 1 1 3.00 3 3 0 0 0 0 0
................................................................................................TAGGTTATATGACTTAACTCACA..................................................... 23 1 1 3.00 3 3 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACATAG.................................................. 26 0 1 3.00 3 3 0 0 0 0 0
................................................................................................TAGGTTATTTGACTTAACTCACA..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
................................................................................................TAGGTTATGTGACTTAACTCAC...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGCTGATGATGATCAAT.................................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0
...................................................TGAGTGGTGATGATGATCAATAT.................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................AGGTTATCTGACTTAACTCAC...................................................... 21 0 1 2.00 2 2 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCATA..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
................................................................................................TAGGTTATATGACTTAACTCACAT.................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................ATAGGTTATCTGACTTAACT......................................................... 20 0 1 2.00 2 1 1 0 0 0 0
................................................................................................TAGGTTATCTGACTTGACTCAC...................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATAGGTTATCTGACTTAACTCAA...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGGTGATGATCATCAATA................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0
.................................................................GATCAATATTGGGATATGCTTTTC................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................TATCTGACTTAACTCACAT.................................................... 19 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTATCTGACTTAACTCACAT.................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.................................................................GATCAATATTGGGATATGCT....................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
......................................................GTGGTGATGATGATCAATATT................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACAA.................................................... 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCAA...................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................AGGTTATCTGACTTAACTCA....................................................... 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................TAGGTTATTTGACTTAACTCA....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGGTGATGATGATCAATTT.................................................................................................. 24 1 1 1.00 1 0 0 0 1 0 0
................................................................................................GAGGTTATCTGACTTAACTCACA..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................AGGTTTCTGACTTAACTCACA..................................................... 21 3 1 1.00 1 1 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACACC................................................... 25 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TATCTGACTTAACTCATATAGC................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..............................................................................................AATAGGTTATCTGACTTAACTCACATAG.................................................. 28 0 1 1.00 1 0 1 0 0 0 0
................................................................................................TAGGTTATGTGACTTAACTCACAGG................................................... 25 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATAGGTTAACTGACTTAACTCAC...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................AAACCGATGCCAGTGATGGTCTGGAT............ 26 0 1 1.00 1 0 1 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATAGGTTATCTGACTTAACTCA....................................................... 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................TAGGTTATGTGACTTAACTCACAC.................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGGTGATGATGATCAATA................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
............................................................................................CTAATAGGTTATCTGACTTAACT......................................................... 23 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................TTAGGTTATCTGACTTAACTCACAT.................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGAGCTGATGATGATCAAT.................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................CTAGGTTATCTGACTTAACTCAC...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGGTGATGATGATCAATA................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
............................................................................................CTAATAGGTTATCTGACT.............................................................. 18 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................AGGTTATCAGACTTAACTCACA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTATCTCA....................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTGGTGATGATGATCAATATTG................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1
..................................................GTGAGTGGTGATGATGAT........................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACAG.................................................... 24 1 1 1.00 1 0 1 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCACC..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TAGGTTATCTGACTTAACTCAGAT.................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATAGGTTATCTGACTTAACTCACT..................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGGTGATGATGATCAATC................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
......................................................................ATATTGGGATATGCTTTTCTGACTAA............................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................AGGTTATCTGACTTAACTC........................................................ 19 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATAGGTTAACTGACTTAACTCACAT.................................................... 25 1 1 1.00 1 1 0 0 0 0 0
TCACAGGCGGCTCAGAGGAT........................................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 1 0
........................................CATAAAGAAAGTGAGTGG.................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

ACTGTCTGCCGAGGCTCCTAACGGACATGGAGTTACAGATGTGTTTCTTACACTCACCACTACTACTAGTTATAACCCTATACGAAAAGACTGATTATCCAATAGACTGAATTGAGTGTATCAATATAGGGTGGTTTGGCTACGGTCACTACCAGACCTAGATACCGCCCCC

****************************************************(((((((((...(((((((..((((((...............)))))))))))))..)))..))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_6:2036426-2036597 - dpe_1888 confident TGACAGACGGCTCCGAGGATTGCCTGTACCTCAATGTCTACACAAAGAATGTGAGTGGTGA--------------------------TGAT---GATCA-ATATTGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAATA---------------GGTTATC------------TGACT---TAACTC---------ACATAGTTATATCCCACCAAACCGATGCCAGTGATGGTCTGGATCTATGGCGGGGG
dp5 2:26718336-26718507 - dps-mir-2571 Known_mirbase TGACAGATGGCTCCGAGGATTGCCTGTACCTCAATGTCTACACAAAGAATGTGAGTGGTGA--------------------------TGAT---GATCA-ATATTGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAATA---------------GGTTATC------------TGACT---TATCTC---------ACATAGTTATATCCCACCAAACCAATGCCAGTGATGGTCTGGATCTATGGCGGCGG
droWil2 scf2_1100000004902:7206319-7206486 - TGACTGATGGCTCTGAGGATTGTCTATACCTCAATGTATATACTAAGAATGTAAGTTGTGAGAG----------------------------ACAAATAC--G----ATGAC-AATTTTCTATACATA-------T----------------------------------------------------TAA-----------------------------------------------------TAAAA------------------ATTTGGCT--AT---------TTTTAGTTATATCCCACGAAACCTATGCCTGTGATGGTCTGGATCTATGGCGGTGG
droVir3 scaffold_12855:6210535-6210698 - TGACAGATGGTTCCGAGGACTGTCTCTATCTCAATGTGTATACCAAGAATGTAAGTGAAAA--------------------------A---------TAA-----GC--GAAAAA---CTCA------TCTG---------------------------------------------TTTACA----ATAATAT--------------------------------------------------------TT-----------A-TTATT---TGTATC---------GCACAGTTATATCCCAATAAACCAATGCCTGTCATGGTCTGGATCTATGGCGGCGG
droMoj3 scaffold_6540:6550433-6550595 - TGACGGACGGCTCCGAGGACTGCCTCTACCTCAATGTGTACACGAAGAATGTGAGTGGGAAGAA------------------------------GAATAG---------GAGAAG---GTC-------------------------------------------------------GTTCGCAGTAAATAAT----------------------------------AT----------------------AT---------------AT--CTGT--TT---------CGATAGTTGTATCCCATCAAGCCCATGCCTGTGATGGTCTGGATCTATGGGGGTGG
droGri2 scaffold_14906:7830147-7830319 + GGATGGAAGGCAGTGAGGATTGCCTCTACCTTAATGTCTATACGAATAATGTGAGCTAATT-------------------------------------A-AT-----------------------------------------------------------ACATAAAATCTAG--CTT------------T-C----GGAATCGAAATA---------------------ACTAATAACGT--------------------AAACAA---CTTA--AA---------TAACAGGTGAGTCCAACCAAGCCACGTCCTGTCATGGTCTGGATACATGGCGGTGG
droAna3 scaffold_13340:3089495-3089651 - AGTTTGCGGGATCCGAGGACTGCTTGTACCTTAATGTTTATACGAAGGATGTGAGTATTGA--------------------------T---------TT--------------------------------AA------------------TCGCTTGTT---------------------------------------------------------GTTTTAA---------------ATATA---------AAGA----------AAATCTTT--TA---------TTTCAGTTGCAACCTAACAAACTGCGTCCAGTGATGGTGTGGATTTATGGCGGTGG
droBip1 scf7180000396712:1261488-1261645 + AGTTTGCGGGATCTGAGGATTGCTTGTATCTCAATGTTTATACAAAGGATGTGAGTATTTA--------------------------TTAT---AATC-------------------------------------------------------CCTTT--------------------T------------T-------------------------ATTTTAA---------------ATATA---------AAGA----------AATTCTTT--TA---------TTTCAGTTGCAACCAAACAAACTACGTCCAGTGATGGTTTGGATCTATGGCGGTGG
droKik1 scf7180000302706:89618-89790 - TGACAGACGGCTCCGAGGACTGTCTCTACCTCAATGTCTACACAAAGAATGTAAGTGGAAA--------------------------T----------CC--T----TTGAC-ACTTT-----------------------------------CC----------------TAG--CTT------------T------------------CATTTTTATTCTGA--------------------TAATA----ATTT----------GTTTACCC--TC---------CTTAAGTTATATCCCACCAAACCAATGCCTGTGATGGTCTGGATCTATGGCGGTGG
droFic1 scf7180000454063:319444-319606 + AGTACGCGGGCTCAGAGGATTGCCTGTACTTGAATGTCTACGCCAAAGATGTGAGTCTTTA--------------------------A---------TT--------------------------------------------------------------AGCAAAAAAAAGCTGCAA---------------------------------------------GCT----AATACTAAATA-----------------------TGAAC-CCTT--TA---------TTGTAGTTGCACCCAAGTAAACTGCGTCCGGTGATGGTTTGGATCTACGGCGGGGG
droEle1 scf7180000491104:981001-981189 + TGGTGGAGGGTTCCGAGGATTGCCTGTATCTGAATATTTCTGTGAAAACTGTAAGTTAATCGCAG----------------------TGTT---ACACGT--T----AAAAC-AATTCGGTT------TCACATATTGATAGCTTAGTAAAATGTTA------------------------------T--------------------------------------------------------TA---------AC----------AATTCCTT--TATT-------TGATAG---CTGCTCGGCGAACCTATGCCCATCATGGTCTATATTCATGGAGGTGC
droRho1 scf7180000777138:2064-2227 + TGGTGGAGGGCTCCGAGGATTGCCTATATCTGAATATTTCAGCGAAAACTGTAAGCTAATCGCG-----------TTAATTTAAA-------------------------------------------------------CATGACACTAAAAGGTG------------------------------ATTATAT------------------------------------------------------------------TTTA------TACTG--CATT-------TTAAAG---CTGCTCGGCGAACCCATGCCCATTATGGTCTATATCCATGGAGGTGC
droBia1 scf7180000302155:1284760-1284918 + AGTTCGCAGGCTCAGAGGATTGCCTCTACTTAAACGTTTACGCTAAAGATGTAAGCTATTC--------------------------A-------------------------------------------GAAAT------------------T------------------------------------TCATTTT------------TA-----GTTATTGGTTT----------------------AT--A----------TCATTACTCT--TA---------TTTTAGTTGCAGCCAAACAAGCTTCGTCCGGTGATGGTCTGGATTTATGGAGGAGG
droTak1 scf7180000415875:482819-482975 - GTA-CGCGGGCTCAGAGGACTGTCTCTACTTGAATGTGTACGTTAAAGATGTAAGTTTTGA--------------------------A---------TA-----------------------------------AT---------------T-------------AAATTGTTG--GTTCAGT-------------------------------------TTG--------A-------GTA-------------CT----------AACTTTTG--CA---------TTTAAGTTGCAACCGAACAAACTTCGTCCCGTGATGGTTTGGATCTATGGAGGAGG
droEug1 scf7180000409760:222458-222645 - TGACCGATGGCTCCGAGGACTGCCTCTACCTCAATGTCTACACAAAGAATGTGAGTTAAAG--------------TTCATTTCACGATGAAGATAAATCC--C----ACAAG-AACTCAGTCTAGATA-------T-------------------------------TAGAT------------TAAATTATAT--------------------------------------------------------------------------TTCTTCT--TC---------CCTTAGTTATATCCCACCAAACCAATGCCTGTGATGGTCTGGATCTATGGAGGTGG
dm3 chr3R:3361556-3361717 - AAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTCCAAGCAGGTAATTTAGGC--------------------------C-------------------------------------------AAAG------------------AC------------------------------------TACCTTT------------TC-----TTTAATCACTGATA---------------GCTG--C------------TGACT--TAC--TT---------TCGAAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATGGCGGGGC
droSim2 3r:3265179-3265355 - AGGTAGAGGGCTCCGAGGACTGCCTCTATCTCAATGTGTACACCAACAATGTGAGTACTTC--------------------------C-------------------------------------------AA------------------TTACTTGTTTAGAAAAAACTTCGT-----------------------------GAAAGC---------------------AGTAATAACTTTA---------AA----------CAATGTACCT--CA---------TTTTAGGTGAAGCCCGATAAGGCTCGTCCGGTTATGGTTTGGATTCACGGAGGAGG
droSec2 scaffold_6:3442592-3442771 - AGGTAGAGGGCTCCGAGGACTGCCTCTATCTCAATGTGTACACCAACAACGTGAGTAAATC--------------------------C-------------------------------------------AA------------------TAATTTGTTTAGATAAAACATCGT-----------------------------GAAAAC---------------------AGTAATAACCT--------------------TAACC----CTTT--TT-TTGGTACATATTAGGTGAAGCCCGATAAGGCTCGCCCGGTTATGGTTTGGATTCACGGAGGAGG
droYak3 3R:7013047-7013245 + TGACCGATGGCTCCGAAGACTGCCTCTACCTCAATGTCTACACAAAGAATGTGAGTACATAGTCGGAAGATATCTTAAAGTGAAC-------------------------------------------------------TATTCAACTAAAAGCCTATT------------------C------------TAT----TGTATCACA--------------------------------ATAAA---------AACAAACTTTAA----TATTTC--CT---------TCACAGTTATATCCCACCAAACCCATGCCCGTGATGGTCTGGATCTATGGTGGTGG
droEre2 scaffold_4770:3583604-3583799 - TGACCGATGGCTCCGAGGACTGCCTCTACCTCAATGTCTACACAAAGAATGTGAGTCCATAGTGA----------------------AGCC---AGCCA-TCTTAAG--CAAATC---CTTA------TCTGAAAACTACTGTTCAACCAAAAGTTA------------------------------ATAATAC------------------------------------------------------------------TTTA----ATATTCT--CT---------TCACAGTTATATCCCACCAAGCCCATGCCCGTGATGGTCTGGATCTATGGCGGCGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGACAGACGGCTCCGAGGATTGCCTGTACCTCAATGTCTACACAAAGAATGTGAGTGGTGA--------------------------TGAT---GATCA-ATATTGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAATA---------------GGTTATC------------TGACT---TAACTC---------ACATAGTTATATCCCACCAAACCGATGCCAGTGATGGTCTGGATCTATGGCGGGGGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACAT....................................................241210.00210251830110
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACA.....................................................231174.0017421671220
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------AC......................................................22140.00401370200
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------A.......................................................21126.00260231110
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACAC....................................................24120.00200200000
..................................................GTGAGTGGTGA--------------------------TGAT---GATC......................................................................................................................................................................................................................................................19115.00150010113
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TAACTC---------ACAT....................................................23113.00130130000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TAACTC---------ACA.....................................................22113.00130130000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATATTGG--...........................................................................................................................................................................................................................................2718.008030005
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TAACTC---------ACA.....................................................2417.007520000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACT..................................................................1916.006112110
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATATT...............................................................................................................................................................................................................................................2516.006202002
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------........................................................2016.006140001
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TAACTC---------ACAT....................................................2516.006150000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACATA...................................................2515.005040010
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TAACTC---------........................................................2114.004220000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-....................................................................................................................................................................................................................................................2014.004040000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATAT................................................................................................................................................................................................................................................2414.004000022
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACATT...................................................2513.003030000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-AT..................................................................................................................................................................................................................................................2213.003000012
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACATAG..................................................2613.003030000
...................................................TGAGTGGTGA--------------------------TGAT---GATCA-ATAT................................................................................................................................................................................................................................................2312.002020000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TAACTC---------AC......................................................2112.002020000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TAACT..................................................................2012.002110000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TAACTC---------AA......................................................2311.001010000
..............................................................................................GATCA-ATATTGG--GATATG---CTTT------TC......................................................................................................................................................................................................................2411.001000001
.........................................................................................................................................................................................................................................................TATC------------TGACT---TAACTC---------ACAT....................................................1911.001100000
........................................................................................................................................................................................................................................................TTATC------------TGACT---TAACTC---------ACAT....................................................2011.001100000
..............................................................................................GATCA-ATATTGG--GATATG---CT................................................................................................................................................................................................................................2011.001100000
......................................................GTGGTGA--------------------------TGAT---GATCA-ATATT...............................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACAA....................................................2411.001010000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------AA......................................................2211.001010000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TAACTC---------A.......................................................2011.001010000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACACC...................................................2511.001100000
...................................................................................................................................................................................................................................AATA---------------GGTTATC------------TGACT---TAACTC---------ACATAG..................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................AAACCGATGCCAGTGATGGTCTGGAT............2611.001100000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACT.....................................................2311.001010000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TAACTC---------A.......................................................2211.001010000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATA.................................................................................................................................................................................................................................................2311.001000010
.................................................................................................................................................................................................................................CTAATA---------------GGTTATC------------TGACT---TAACT..................................................................2311.001100000
...................................................TGAGTGGTGA--------------------------TGAT---GATCA-ATA.................................................................................................................................................................................................................................................2211.001000001
.................................................................................................................................................................................................................................CTAATA---------------GGTTATC------------TGACT---.......................................................................1811.001100000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATATTG..............................................................................................................................................................................................................................................2611.001001000
..................................................GTGAGTGGTGA--------------------------TGAT---GAT.......................................................................................................................................................................................................................................................1811.001000001
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACAG....................................................2411.001100000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TAACTC---------ACC.....................................................2311.001010000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TAACTC---------ACT.....................................................2411.001100000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATC.................................................................................................................................................................................................................................................2311.001000010
....................................................................................................ATATTGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAA...................................................................................................................2611.001010000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TAACTC---------........................................................1911.001010000
dp5
TGACAGATGGCTCCGAGGATTGCCTGTACCTCAATGTCTACACAAAGAATGTGAGTGGTGA--------------------------TGAT---GATCA-ATATTGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAATA---------------GGTTATC------------TGACT---TATCTC---------ACATAGTTATATCCCACCAAACCAATGCCAGTGATGGTCTGGATCTATGGCGGCGGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACA.....................................................231608.006080572211051296
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACAT....................................................241541.005410479131524010126
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------AC......................................................221154.00154014706000010
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------A.......................................................21171.007106701030000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TATCTC---------ACAT....................................................23137.003703700000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACAC....................................................24128.002802242000000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TATCTC---------ACA.....................................................22125.002502500000000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TATCTC---------ACA.....................................................24116.001601600000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------........................................................20116.001601600000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACATA...................................................25112.00120731000010
..................................................GTGAGTGGTGA--------------------------TGAT---GATC......................................................................................................................................................................................................................................................19111.00110300800000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACATT...................................................25111.001101001000000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TATCTC---------AC......................................................21111.001101100000000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATATT...............................................................................................................................................................................................................................................25110.00100420301000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TATCTC---------ACAT....................................................2516.0060410000010
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TATCTC---------A.......................................................2015.0050500000000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TATCTC---------AC......................................................2314.0040400000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACT.....................................................2314.0040400000000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATAT................................................................................................................................................................................................................................................2414.0040101200000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TATCTC---------A.......................................................2214.0040400000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACG.....................................................2313.0030300000000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-AT..................................................................................................................................................................................................................................................2212.0020000011000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATATTG..............................................................................................................................................................................................................................................2612.0020200000000
......................................................................................................................................................................................................................................................GGTTATC------------TGACT---TATCTC---------ACA.....................................................2112.0020200000000
......................................................................................................................................................................................................................................................GGTTATC------------TGACT---TATCTC---------ACAT....................................................2212.0020200000000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TATCT..................................................................2012.0020101000000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATATTGG--...........................................................................................................................................................................................................................................2712.0020100001000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACAA....................................................2412.0020200000000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TATCTC---------ACAA....................................................2311.0010100000000
......................................................................................................ATTGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAAT..................................................................................................................2511.0010100000000
.................GATTGCCTGTACCTCAATGTCTACACA............................................................................................................................................................................................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACATAG..................................................2611.0010001000000
.........................................................................................................GG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAATA---------------GGTT..............................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACAG....................................................2411.0010100000000
...........TCCGAGGATTGCCTGTACC..........................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---T......................................................................1511.0010000000001
......................................................................................................................................................................................................................................................GGTTATC------------TGACT---TATCTC---------AC......................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................AGTGATGGTCTGGATCTATGGCGGCG.2611.0010000000001
......................................................GTGGTGA--------------------------TGAT---GATCA-ATATTG..............................................................................................................................................................................................................................................2211.0010000001000
..............................................................................................GATCA-ATATTGG--GATATG---CTTT------TCC.....................................................................................................................................................................................................................2511.0010010000000
........................................................GGTGA--------------------------TGAT---GATCA-ATATT...............................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................GTTATC------------TGACT---TATCTC---------ACAT....................................................2111.0010100000000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-ATATTT..............................................................................................................................................................................................................................................2611.0010000100000
.......................................................................................................................................................................................................................................................GTTATC------------TGACT---TATCTC---------ACATA...................................................2211.0010100000000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-....................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................GATCA-ATATTGG--GATATG---..................................................................................................................................................................................................................................1811.0010000100000
................................................................................................................................................................................................................................ACTAATA---------------GGTTATC------------TGACT---TATCTC---------ACAT....................................................2911.0010100000000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TATCTC---------........................................................2111.0010100000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------T.......................................................2111.0010100000000
.......................................................................................................TTGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTA....................................................................................................................2211.0010100000000
......................................................................................................................................................................................................................................A---------------GGTTATC------------TGACT---TATCTC---------ACATT...................................................2411.0010100000000
.........................................................................................................GG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTAA...................................................................................................................2111.0010100000000
.............CGAGGATTGCCTGTACCTC........................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................TGAGTGGTGA--------------------------TGAT---GATCA-ATATT...............................................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACATTT..................................................2611.0010100000000
..................ATTGCCTGTACCTCAATGT...................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................TGG--GATATG---CTTT------TCTG--------------------------------------------------------------------------------------------ACTA....................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCT..................................................................1911.0010100000000
....................................................................................................................................................................................................................................ATA---------------GGTTATC------------TGACT---TATCTC---------ACATA...................................................2611.0010100000000
..........CTCCGAGGATTGCCTGTACCTCAATGT...................................................................................................................................................................................................................................................................................................................2711.0010100000000
..................................................GTGAGTGGTGA--------------------------TGAT---GATCA-A...................................................................................................................................................................................................................................................2111.0010000010000
.....................................................................................................................................................................................................................................TA---------------GGTTATC------------TGACT---TATCTC---------ACATAA..................................................2611.0010100000000
........................................................GGTGA--------------------------TGAT---GATCA-ATATTA..............................................................................................................................................................................................................................................2011.0010000100000
...............................................................................................................................................................................................................................................................................................................ACCAAACCAATGCCAGTGATGGTCTGGAC............2911.0010010000000
droWil2
TGACTGATGGCTCTGAGGATTGTCTATACCTCAATGTATATACTAAGAATGTAAGTTGTGAGAG----------------------------ACAAATAC--G----ATGAC-AATTTTCTATACATA-------T----------------------------------------------------TAA-----------------------------------------------------TAAAA------------------ATTTGGCT--AT---------TTTTAGTTATATCCCACGAAACCTATGCCTGTGATGGTCTGGATCTATGGCGGTGGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................................................................................................................................................................................................ATGGTCTGGATCTATGGC.....1811.00110000
droVir3
TGACAGATGGTTCCGAGGACTGTCTCTATCTCAATGTGTATACCAAGAATGTAAGTGAAAA--------------------------A---------TAA-----GC--GAAAAA---CTCA------TCTG---------------------------------------------TTTACA----ATAATAT--------------------------------------------------------TT-----------A-TTATT---TGTATC---------GCACAGTTATATCCCAATAAACCAATGCCTGTCATGGTCTGGATCTATGGCGGCGGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....GATGGTTCCGAGGACTGT.................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000001100000000
.....GATGGTTCCGAGGACTGTCTCT.............................................................................................................................................................................................................................................................................................................................2212.0020000000001000000000100000000000000000000000000000000000000000000000000000000000
.....GATGGTTCCGAGGACTGTCTCTAT...........................................................................................................................................................................................................................................................................................................................2412.0020001000000000000000000000000000000000000000000000000000000000000000010000000000
.GACAGATGGTTCCGAGGA.....................................................................................................................................................................................................................................................................................................................................1812.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
TGACAGATGGTTCCGAGGA.....................................................................................................................................................................................................................................................................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....GATGGTTCCGAGGACTGTCTCTA............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..........TTCCGAGGACTGTCTCTATCT.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................CTCTATCTCAATGTGTATACCA...........................................................................................................................................................................................................................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....GATGGTTCCGAGGACTGTCTCTATC..........................................................................................................................................................................................................................................................................................................................2511.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCCGAGGACTGTCTCTATCT.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.GACAGATGGTTCCGAGGACTGT.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................GGTCTGGATCTATGGCGGC..1920.5010000000001000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
TGACGGACGGCTCCGAGGACTGCCTCTACCTCAATGTGTACACGAAGAATGTGAGTGGGAAGAA------------------------------GAATAG---------GAGAAG---GTC-------------------------------------------------------GTTCGCAGTAAATAAT----------------------------------AT----------------------AT---------------AT--CTGT--TT---------CGATAGTTGTATCCCATCAAGCCCATGCCTGTGATGGTCTGGATCTATGGGGGTGGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................ACCTCAATGTGTACACGAA..........................................................................................................................................................................................................................................................................................................1911.001000001
.....................GCCTCTACCTCAATGTGTACACGAAGAAT......................................................................................................................................................................................................................................................................................................2911.001100000
................................................................................................................................................................................................................................................................................................................................GATGGTCTGGATCTATGGGGGT..2220.501000001
..............................................................................................................................................................................................................................................................................................................................GTGATGGTCTGGATCTATGGGGGTGG2620.501001000
................................................................................................................................................................................................................................................................................................................................GATGGTCTGGATCTATGGGGG...2120.501001000
droGri2
GGATGGAAGGCAGTGAGGATTGCCTCTACCTTAATGTCTATACGAATAATGTGAGCTAATT-------------------------------------A-AT-----------------------------------------------------------ACATAAAATCTAG--CTT------------T-C----GGAATCGAAATA---------------------ACTAATAACGT--------------------AAACAA---CTTA--AA---------TAACAGGTGAGTCCAACCAAGCCACGTCCTGTCATGGTCTGGATACATGGCGGTGGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
GGATGGAAGGCAGTGAGGATTGCCT...............................................................................................................................................................................................................................................................................................................................2511.00101
...................................................................................................................................................................................................................................................................................................................AGCCACGTCCTGTCATGGTCTGGA.............2411.00110
droAna3
AGTTTGCGGGATCCGAGGACTGCTTGTACCTTAATGTTTATACGAAGGATGTGAGTATTGA--------------------------T---------TT--------------------------------AA------------------TCGCTTGTT---------------------------------------------------------GTTTTAA---------------ATATA---------AAGA----------AAATCTTT--TA---------TTTCAGTTGCAACCTAACAAACTGCGTCCAGTGATGGTGTGGATTTATGGCGGTGGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
AGTTTGCGGGATCCGAGGA.....................................................................................................................................................................................................................................................................................................................................1911.001001000
droBip1
AGTTTGCGGGATCTGAGGATTGCTTGTATCTCAATGTTTATACAAAGGATGTGAGTATTTA--------------------------TTAT---AATC-------------------------------------------------------CCTTT--------------------T------------T-------------------------ATTTTAA---------------ATATA---------AAGA----------AATTCTTT--TA---------TTTCAGTTGCAACCAAACAAACTACGTCCAGTGATGGTTTGGATCTATGGCGGTGGSizeHit CountTotal NormTotal
No Reads
droKik1
TGACAGACGGCTCCGAGGACTGTCTCTACCTCAATGTCTACACAAAGAATGTAAGTGGAAA--------------------------T----------CC--T----TTGAC-ACTTT-----------------------------------CC----------------TAG--CTT------------T------------------CATTTTTATTCTGA--------------------TAATA----ATTT----------GTTTACCC--TC---------CTTAAGTTATATCCCACCAAACCAATGCCTGTGATGGTCTGGATCTATGGCGGTGGSizeHit CountTotal NormTotal
No Reads
droFic1
AGTACGCGGGCTCAGAGGATTGCCTGTACTTGAATGTCTACGCCAAAGATGTGAGTCTTTA--------------------------A---------TT--------------------------------------------------------------AGCAAAAAAAAGCTGCAA---------------------------------------------GCT----AATACTAAATA-----------------------TGAAC-CCTT--TA---------TTGTAGTTGCACCCAAGTAAACTGCGTCCGGTGATGGTTTGGATCTACGGCGGGGGSizeHit CountTotal NormTotal
No Reads
droEle1
TGGTGGAGGGTTCCGAGGATTGCCTGTATCTGAATATTTCTGTGAAAACTGTAAGTTAATCGCAG----------------------TGTT---ACACGT--T----AAAAC-AATTCGGTT------TCACATATTGATAGCTTAGTAAAATGTTA------------------------------T--------------------------------------------------------TA---------AC----------AATTCCTT--TATT-------TGATAG---CTGCTCGGCGAACCTATGCCCATCATGGTCTATATTCATGGAGGTGCSizeHit CountTotal NormTotal
No Reads
droRho1
TGGTGGAGGGCTCCGAGGATTGCCTATATCTGAATATTTCAGCGAAAACTGTAAGCTAATCGCG-----------TTAATTTAAA-------------------------------------------------------CATGACACTAAAAGGTG------------------------------ATTATAT------------------------------------------------------------------TTTA------TACTG--CATT-------TTAAAG---CTGCTCGGCGAACCCATGCCCATTATGGTCTATATCCATGGAGGTGCSizeHit CountTotal NormTotal
No Reads
droBia1
AGTTCGCAGGCTCAGAGGATTGCCTCTACTTAAACGTTTACGCTAAAGATGTAAGCTATTC--------------------------A-------------------------------------------GAAAT------------------T------------------------------------TCATTTT------------TA-----GTTATTGGTTT----------------------AT--A----------TCATTACTCT--TA---------TTTTAGTTGCAGCCAAACAAGCTTCGTCCGGTGATGGTCTGGATTTATGGAGGAGGSizeHit CountTotal NormTotal
No Reads
droTak1
GTA-CGCGGGCTCAGAGGACTGTCTCTACTTGAATGTGTACGTTAAAGATGTAAGTTTTGA--------------------------A---------TA-----------------------------------AT---------------T-------------AAATTGTTG--GTTCAGT-------------------------------------TTG--------A-------GTA-------------CT----------AACTTTTG--CA---------TTTAAGTTGCAACCGAACAAACTTCGTCCCGTGATGGTTTGGATCTATGGAGGAGGSizeHit CountTotal NormTotal
No Reads
droEug1
TGACCGATGGCTCCGAGGACTGCCTCTACCTCAATGTCTACACAAAGAATGTGAGTTAAAG--------------TTCATTTCACGATGAAGATAAATCC--C----ACAAG-AACTCAGTCTAGATA-------T-------------------------------TAGAT------------TAAATTATAT--------------------------------------------------------------------------TTCTTCT--TC---------CCTTAGTTATATCCCACCAAACCAATGCCTGTGATGGTCTGGATCTATGGAGGTGGSizeHit CountTotal NormTotal
No Reads
dm3
AAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTCCAAGCAGGTAATTTAGGC--------------------------C-------------------------------------------AAAG------------------AC------------------------------------TACCTTT------------TC-----TTTAATCACTGATA---------------GCTG--C------------TGACT--TAC--TT---------TCGAAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATGGCGGGGCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................................................................................................................................................................................................................................AAAGTGAGAAGCCATTGCCGG.........................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000001000000000000000000000000000000000
......AAGGCGGCGAGGATTGTCTGT.............................................................................................................................................................................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000001000000000000000000000000000000000
......................................................TTTAGGC--------------------------C-------------------------------------------AAAG------------------AC------------------------------------TACCTTT------------......................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TGACT--TAC--TT---------TCGAAGCTGAA.............................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TGAGAAGCCATTGCCGGTGAT.....................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AAGTGAGAAGCCATTGCCGGT........................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000000000000
.......AGGCGGCGAGGATTGTCTGTA............................................................................................................................................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................TTAATCACTGATA---------------GCTG--C------------TG.............................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...........................ATCTGAACGTCTATTCCAAGC........................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAAAAGTGAGAAGCCATTGC............................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AAAAGTGAGAAGCCATTGCCG..........................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TTTAATCACTGATA---------------GCTG--C------------TG.............................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TTAATCACTGATA---------------GCTG--C------------TGA............................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..............................TGAACGTCTATTCCAAGCAGG.....................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TG--C------------TGACT--TAC--TT---------TCGAAGCT................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.AATCGAAGGCGGCGAGGATTG..................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
....................TGTCTGTATCTGAACGTCTA................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GAAGCTGAAAAGTGAGAAGC..................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........CGGCGAGGATTGTCTGTATCT.........................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ATA---------------GCTG--C------------TGACT--TAC--TT---------TCG.....................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................TATCTGAACGTCTATTCCAAGCAGC.....................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................AGCCATTGCCGGTGATGGT..................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCGAGGATTGTCTGTATCTG........................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CATTGCCGGTGATGGTGT................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TGACT--TAC--TT---------TCGAAGCTGAAAAGTG........................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GGTGATGGTGTACATTTATGGC.....2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GCTGAAAAGTGAGAAGCCATT..............................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATTGCCGGTGATGGTGTACA.............2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCTGTATCTGAACGTCTATTCCAAGC........................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................T--TAC--TT---------TCGAAGCTGAAAAG..........................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.................GATTGTCTGTATCTGAACGTC..................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................GTCTGTATCTGAACGTCTATT..............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TT------------TC-----TTTAATCACTGATA---------------GCT...............................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
AAATCGAAGGCGGCGAGGATT...................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACT--TAC--TT---------TCGAAGCTGAAAA...........................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....GAAGGCGGCGAGGATTGTCTGT.............................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................TG--C------------TGACT--TAC--TT---------TCGAAGCTGAAAAG..........................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GAGAAGCCATTGCCGGTGATGGTG.................2411.001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ATGGTGTACATTTATGGCGG...2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................TGAAAAGTGAGAAGCCATTGCC...........................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TGGTGTACATTTATGGCGGGG.2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TAATCACTGATA---------------GCTG--C------------TGAC...........................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CGAAGCTGAAAAGTGAGAAGC..................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TGAGAAGCCATTGCCGGTGATG....................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AAGCTGAAAAGTGAGAAGC..................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGCAGGTAATTTAGGC--------------------------C-------------------------------------------AAAG------------------...............................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................ATTTAGGC--------------------------C-------------------------------------------AAAG------------------AC------------------------------------TACCTTT------------......................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........GGCGAGGATTGTCTGTATCTG........................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................TGGTGTACATTTATGGCGGGGG2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................GTAATTTAGGC--------------------------C-------------------------------------------AAAG------------------AC------------------------------------.........................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TTAGGC--------------------------C-------------------------------------------AAAG------------------AC------------------------------------TACCTTT------------T.....................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................TAATTTAGGC--------------------------C-------------------------------------------AAAG------------------AC------------------------------------TACC.....................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................TCTGTATCTGAACGTCTATTCCAAGCAGC.....................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ATGGTGTACATTTATGGCGGG..2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CT--TAC--TT---------TCGAAGCTGAAAAGT.........................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............CGAGGATTGTCTGTATCTGAACGTC..................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................CACTGATA---------------GCTG--C------------TGACT--........................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GGCGAGGATTGTCTGTAT...........................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGGTAGAGGGCTCCGAGGACTGCCTCTATCTCAATGTGTACACCAACAATGTGAGTACTTC--------------------------C-------------------------------------------AA------------------TTACTTGTTTAGAAAAAACTTCGT-----------------------------GAAAGC---------------------AGTAATAACTTTA---------AA----------CAATGTACCT--CA---------TTTTAGGTGAAGCCCGATAAGGCTCGTCCGGTTATGGTTTGGATTCACGGAGGAGGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............CCGAGGACTGCCTCTATC..........................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.....GAGGGCTCCGAGGACTGC.................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
......AGGGCTCCGAGGACTGCC................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.....GAGGGCTCCGAGGACTGCCTCT.............................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
......AGGGCTCCGAGGACTGCCT...............................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
............CCGAGGACTGCCTCTATCTCA.......................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
......................................................................................................................................................................................................................................................................................................................CTCGTCCGGTTATGGTTTGGA.............2111.00100100000000000000
..GTAGAGGGCTCCGAGGACTGCCT...............................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.....GAGGGCTCCGAGGACTGCCTC..............................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
....AGAGGGCTCCGAGGACTGCCTCTATCT.........................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.........GCTCCGAGGACTGCCTCTATCT.........................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...............................................................................................................................................................TTAGAAAAAACTTCGT-----------------------------GAAAGC---------------------.................................................................................................................2211.00101000000000000000
............CCGAGGACTGCCTCTATCTCAATGT...................................................................................................................................................................................................................................................................................................................2511.00100001000000000000
.........GCTCCGAGGACTGCCTCTAT...........................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
......AGGGCTCCGAGGACTGCCTCTATCTC........................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
........................................................................................................................................................................................................................................................................................................................CGTCCGGTTATGGTTTGGA.............1911.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................GGTTATGGTTTGGATTCACGGAG....2311.00100010000000000000
......AGGGCTCCGAGGACTGCCTCTATCTCA.......................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
droSec2
AGGTAGAGGGCTCCGAGGACTGCCTCTATCTCAATGTGTACACCAACAACGTGAGTAAATC--------------------------C-------------------------------------------AA------------------TAATTTGTTTAGATAAAACATCGT-----------------------------GAAAAC---------------------AGTAATAACCT--------------------TAACC----CTTT--TT-TTGGTACATATTAGGTGAAGCCCGATAAGGCTCGCCCGGTTATGGTTTGGATTCACGGAGGAGGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....AGAGGGCTCCGAGGACTGCCT...............................................................................................................................................................................................................................................................................................................................2113.0030120
.....GAGGGCTCCGAGGACTGCCTCT.............................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................................................................TAAGGCTCGCCCGGTTATGGTTTGG..............2511.0010010
................................................................................................................................................................................................................................................................................................................ATAAGGCTCGCCCGGTTATG....................2011.0010010
...........................ATCTCAATGTGTACACCAACAACGTGA..................................................................................................................................................................................................................................................................................................2711.0010010
...................................................................................................................................................................................................................................................................................................................................GGTTTGGATTCACGGAGGAG.2011.0010010
................................................................................................................................................................................................................................................................................................................ATAAGGCTCGCCCGGTTATGGTTTG...............2511.0010010
.....................................................................................................................................................................................................................................................................................................................GCTCGCCCGGTTATGGTTTGGA.............2211.0010100
.....GAGGGCTCCGAGGACTGC.................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................................................................................................................................................................................................................................................................................................................GGTTTGGATTCACGGAGGAGG2111.0010100
..GTAGAGGGCTCCGAGGACT...................................................................................................................................................................................................................................................................................................................................1911.0010100
..GTAGAGGGCTCCGAGGACTGCCTCT.............................................................................................................................................................................................................................................................................................................................2511.0011000
.....................................GTACACCAACAACGTGAAGC...............................................................................................................................................................................................................................................................................................2070.1411000
droYak3
TGACCGATGGCTCCGAAGACTGCCTCTACCTCAATGTCTACACAAAGAATGTGAGTACATAGTCGGAAGATATCTTAAAGTGAAC-------------------------------------------------------TATTCAACTAAAAGCCTATT------------------C------------TAT----TGTATCACA--------------------------------ATAAA---------AACAAACTTTAA----TATTTC--CT---------TCACAGTTATATCCCACCAAACCCATGCCCGTGATGGTCTGGATCTATGGTGGTGGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................................................................................................................................................................................................................................................GCCCGTGATGGTCTGGATCTATGGC.....2520.50100100000000
.........GCTCCGAAGACTGCCTCTACCTC........................................................................................................................................................................................................................................................................................................................2320.50101000000000
droEre2
TGACCGATGGCTCCGAGGACTGCCTCTACCTCAATGTCTACACAAAGAATGTGAGTCCATAGTGA----------------------AGCC---AGCCA-TCTTAAG--CAAATC---CTTA------TCTGAAAACTACTGTTCAACCAAAAGTTA------------------------------ATAATAC------------------------------------------------------------------TTTA----ATATTCT--CT---------TCACAGTTATATCCCACCAAGCCCATGCCCGTGATGGTCTGGATCTATGGCGGCGGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................................................................................................................................................................................................................................................................GATGGTCTGGATCTATGGCGGCG.2311.0011000000
...........................................................................................................................................................................................................................................................................................................................CCCGTGATGGTCTGGATC...........1811.0011000000
...................................................................................................................................................................................................................................................................................................................AGCCCATGCCCGTGATGGT..................1911.0010000010
.......................................................................................................................................................................................................................................................................................................TATATCCCACCAAGCCCATGC............................2111.0010100000

Generated: 10/20/2015 at 07:08 PM