dpe_1873

exon [dper_GLEANR_12526:12]; CDS [Dper\GL12362-cds]; exon [dper_GLEANR_12526:11]; CDS [Dper\GL12362-cds]; intron [Dper\GL12362-in]

Name	Class	Family	Strand
Hopers2	DNA	hAT-hobo	+
ISFUN1	RC	Helitron	-

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAGTTGATGAGATACTCAAGGATATCGATAGGAATTATGATTACCTAAAGGTAAGTGAATGAATCAAATTAATCTGCAGATGTAAATTCACTTGATTGAAATGGACAGAAATGGCTCAATCGACTCGGCTATTGATGCTGATCGTAGGGAGGGTCGGAATGGGGCGGAAACGATTCCTTGTGGGTTTACAACAAATCTAATATAATCTTCGATTATTTTGTTCAGGATTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC ************************************************.....(((......((((.(((((...((((((((((((((...........(((........((((..(((((((..(((.((((....)))))))...)))))))....)))).........)))..)))))))))))...............)))..))))).)))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V057 head	V111 male body
............CACTCAAGGATATCGATAGGAA.................................................................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0
..................................................................................................................CTCAATCGACTCGGCTATTG.............................................................................................................................................	20	0	20	0.45	9	9	0	0
........................................................................................................................................................................AACGATTCCGTGTGGGGT.........................................................................................	18	2	4	0.25	1	0	1	0
..................................TTATGATTACCTAAGGCTCA.............................................................................................................................................................................................................................	20	3	5	0.20	1	1	0	0
......................................................................................................................ATCGACTCGGCTATTGATGCT........................................................................................................................................	21	0	20	0.20	4	0	0	4
.................................................................................................................................................AGCGAGGGTCGGGATGGCG...............................................................................................................	19	3	20	0.05	1	0	1	0
...............TCAAGGGTGTCGATAGGGA.................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1

GTCAACTACTCTATGAGTTCCTATAGCTATCCTTAATACTAATGGATTTCCATTCACTTACTTAGTTTAATTAGACGTCTACATTTAAGTGAACTAACTTTACCTGTCTTTACCGAGTTAGCTGAGCCGATAACTACGACTAGCATCCCTCCCAGCCTTACCCCGCCTTTGCTAAGGAACACCCAAATGTTGTTTAGATTATATTAGAAGCTAATAAAACAAGTCCTAATAATACGACCGAAACGGTATCTCTTACAACACGGGCGAATGTATCG ************************************************.....(((......((((.(((((...((((((((((((((...........(((........((((..(((((((..(((.((((....)))))))...)))))))....)))).........)))..)))))))))))...............)))..))))).)))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head
.........................................................................................................................CTGAGCCGATAACTACGAC.......................................................................................................................................	19	0	20	0.05	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_6:726899-727173 +	dpe_1873	CAGTTGATGAGATACTCAAGGATATCGATAGGA------------------------------ATTAT-GATTACCTAAAGGTAAGTGAATGAATCAAATTAATCTGCAGATGTAAATTCACTTGATTGAA-----ATGGACAGAAATGGCTCAATCGACTCGGCTATTGATGC------------------TGATCGTAGGGAG-------GGTCGGAAT-GGGGCGGAAACGATTCCTTGTGGG-----------------TTTACAACAAATCTAATATAATCTTCGATTA-------------TTT-----TG-----------TTCAGGATTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC
dp5	2:25398106-25398370 +	dps_784	CAGTTGATGAGATACTCAAGGATATCGATAGGA------------------------------ATTAT-GATTACCTAAAGGTAAGTGAATGAATCAAATTAATCTGCTAATGTAAATTCACTTGATTGAA-----ATGGACAGAAATGGCTCAATCGACTCGGCTATTGATGC------------------TGATCGTAGG------------------AGGGGTCGGATACGATTCCTTTTGGG-----------------TTTACAACAAATCTAATATACTCTTCGATTA-------------TTT-----TT-----------TTCAGGACTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC
droWil2	scf2_1100000004943:15730568-15730646 +		C------------------TA----------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------TTAATCTTAATTGC-------------TAT-----TA-----------CACAGGATTATTATGCCGGATTTGCCATTGAGAATGTTGTGCCCGCTTATATAGC
droVir3	scaffold_12936:519844-520050 +		A------------------GGATATCGATATCGATTTTTATCGATTTCTTGGAAACGGAGTAAATTATCGATTATCGAAAATAAACGGA-----------------------------------CATGGAC-----ATGGACGGACATGGCTAGATCGACTCGGCTATTGATGC------------------TGATCAAGAATAT-----ATATACTTTATGGGGTCGGAGATGTTTCCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATACAATATACCCTT-----------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:20784212-20784292 -		T------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAATCCA---------------------CGCGCATC-----TCCCGTTATAGGATTACTATGCAGGCTTTGCCATAGAGAATGTTGTGCCTGCTTATATAGC
droGri2	scaffold_14906:434408-434459 -		A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTACTATGCTGGCTTTGCTATAGAGAACGTTGTACCCGCCTACATAGC
droAna3	scaffold_12911:2388911-2388977 -		A------------------TT----------------------------------------------------------------------------------------------------------------------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----CT-----------TTCAGGATTACTATGCCGGCTTTGCCATAGAGAATGTTGTCCCGGCTTACATAGC
droBip1	scf7180000396714:709209-709290 +		AAAC--------------------ATGATAAAA------------------------------ATCAG-GATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----CT-----------TTCAGGATTACTATGCTGGCTTTGCCATTGAGAACGTGGTGCCGGCCTATATAGC
droKik1	scf7180000302461:401281-401356 +		A------------------TC----------------------------------------------------------------------------------------------------------------------TAATAATTTAATTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TCCAGGACTACTATGCTGGCTTTGCCATAGAAAATGTGGTGCCTGCCTATATAGC
droFic1	scf7180000453488:95937-95991 +		T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGGATTACTATGCTGGCTTTGCCATTGAAAACGTTGTGCCCGCCTACATAGC
droEle1	scf7180000491080:1960183-1960253 +		A------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTA---------------------CGG---TT-----------TTTAGGATTATTATGCCGGCTTTGCCATAGAAAACGTGGTGCCCGCCTACATAGC
droRho1	scf7180000767930:65062-65116 -		T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGGATTATTATGCCGGCTTTGCCATTGAAAACGTGGTGCCCGCCTACATAGC
droBia1	scf7180000299317:19807-19923 +		A------------------G--------------------------------------------------------------------------------------------------------------------ACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCC------------------TAAGCAAAAATAT-------ATACTTTATAAGGTCGGAAACGCTTCCTTCTAGC-----------------TTTCCGACAAATCTAGTATACGCTTTTATT------------------------------------------------------------------------------------------
droTak1	scf7180000415396:498301-498427 +		A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGATCGACTCGGCTAGTGATCC------------------TGATCAAGAATAT-----ATATACTTTATGGGGTCGGAAACGCTTCCTTCTACCTGTTACATAC-------TTTTGCACGAATACAATATACCCTTTTACT------------------------------------------------------------------------------------------
droEug1	scf7180000409138:9272-9395 -		G------------------------------------------------------------------------------------------------------------------------------------------GACGGACATGGCTCAATCGTCTTCGCAATTGATAC------------------TGATCAAGAATAT-----ATATACTTTATAGGGTCGGAAACGCTTCCTTCTACC-----------------TTTTCAACAAATCTAGTATAACCTTTTACTC-------------TTT-----T------------------------------------------------------------ACC---C
dm3	chr3L:22010389-22010550 +		A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGATCGACTCGGCTATTGAACC------------------TGATAAAGAATAT-----TAATACTGTATATGGTCGGAAACGCTTCCTTCTGTCTGTTACATAC-------TTTTCAACGAATCTAGTATACTCTA---------------------C-----GAGTAACGGGTG------CTTTTTCGTGATAGGTTTGCCTTAGGG-----------------------
droSim2	node_90918:16029-16173 +		G------------------A----------------------------------------------------------------------------------------------------------TCGAG-----ACAGAAGGACATGGCTAGATCGACTCGGCTATTGATCC------------------TGATCAA-----------------------TGGTCGGAAACGCTTCCTTCTGCCAGTAATACAC-------TTTTCAACAAATCTAGTATACCCTTATACTC-------------TAC-----GA-----------GTAACGGTTATTATAATGGCTTT--------------------------------
droSec2	scaffold_4:2699728-2699893 +		A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGATCGACTCGGCTATTGATCC------------------TGATCAAGAATATATACTATATACTTTATGTGGTCGGAAACGTTTCCTTCTGCCTGTTA----------------CAACGAATTTATTATACCCTTTTACTA-------------TAC-----GA-----------GTAACGGGTATAATAATCAGTCGACCATAAAACACGT------------------
droYak3	3R:16699515-16699785 +	dya_1058	CAGTTGATGAGATTCTTAAAGATATCGACAGGA------------------------------ACTAC-GATTATCTTAAGGTAATTTCTTTAAACTTAATGTTCT--TAATGTTATTATACCCGTTACTCGTAGAGTAAAAGGGTATAGT-AGATTCGTTCTATTCGTCACTATGCTTAGTGACGGGTATCAGAT---------------------------AGTCGGGAGTCT-----------------------------------CGACTATAGCATACTCTCTTATTTTAACTAACATTAATTT-----AT-----------TTTAGGACTACTATGCTGGCTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC
droEre2	scaffold_4512:339920-340099 -		T------------------TC------------------------------------------------------------------------------------------------------------AT-----ACGGACGAACATGGCCAGATCGACTCGGCTATTGATCC------------------TGATCAAGAATATAT---ATATACTTTATATGGTCGGAAACGATTTCTTGTAGCTGTTACATAT-------TTTTCAACGAATATAGTATACCCTTTTACTG-------------TAT-----TAGTAACGGGTA-----TAAC-----TATTACCGTTGCAATATAATAGGTTG----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CAGTTGATGAGATACTCAAGGATATCGATAGGA------------------------------ATTAT-GATTACCTAAAGGTAAGTGAATGAATCAAATTAATCTGCAGATGTAAATTCACTTGATTGAA-----ATGGACAGAAATGGCTCAATCGACTCGGCTATTGATGC------------------TGATCGTAGGGAG-------GGTCGGAAT-GGGGCGGAAACGATTCCTTGTGGG-----------------TTTACAACAAATCTAATATAATCTTCGATTA-------------TTT-----TG-----------TTCAGGATTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................CTCAATCGACTCGGCTATTG.....................................................................................................................................................................................................................	20	20	0.45	9	0	9	0	0	0	0
..........................................................................................................................................................ATCGACTCGGCTATTGATGC------------------T..............................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	4

dp5

CAGTTGATGAGATACTCAAGGATATCGATAGGA------------------------------ATTAT-GATTACCTAAAGGTAAGTGAATGAATCAAATTAATCTGCTAATGTAAATTCACTTGATTGAA-----ATGGACAGAAATGGCTCAATCGACTCGGCTATTGATGC------------------TGATCGTAGG------------------AGGGGTCGGATACGATTCCTTTTGGG-----------------TTTACAACAAATCTAATATACTCTTCGATTA-------------TTT-----TT-----------TTCAGGACTATTATGCTGGCTTTGCCATAGAGAATGTTGTGCCCGCTTACATAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................AGAGAATGTTGTGCCCGCT........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATGC------------------TGATCGTAGG------------------AGGGG..............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................TGGCTCAATCGACTCGGCTATTG.....................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.........................................................................................................................................................AATCGACTCGGCTATTGATGC------------------...............................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................TGGCTCAATCGACTCGGCTA........................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................ATGGCTCAATCGACTCGGCT.........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................ATCGACTCGGCTATTGATGC------------------TGA............................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droWil2

C------------------TA----------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------TTAATCTTAATTGC-------------TAT-----TA-----------CACAGGATTATTATGCCGGATTTGCCATTGAGAATGTTGTGCCCGCTTATATAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

A------------------GGATATCGATATCGATTTTTATCGATTTCTTGGAAACGGAGTAAATTATCGATTATCGAAAATAAACGGA-----------------------------------CATGGAC-----ATGGACGGACATGGCTAGATCGACTCGGCTATTGATGC------------------TGATCAAGAATAT-----ATATACTTTATGGGGTCGGAGATGTTTCCTTCTGCCTGTTACATACATTTGGATTTCGCACAAATACAATATACCCTT-----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................CAAGAATAT-----ATATACTTTATGGG...............................................................................................................................................................	23	20	2.65	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAAT............................................................................................................	22	20	0.90	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	4	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCAAGAATAT-----ATATACTTTATGGGG..............................................................................................................................................................	25	20	0.90	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATA...........................................................................................................	23	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	6	0	3	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAA........................................................................................................	26	20	0.85	17	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATAC..........................................................................................................	24	20	0.50	10	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAA..............................................................................................................	20	20	0.40	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGGAAACGGAGTAAATTATCGATTAT....................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AAGAATAT-----ATATACTTTATGGGGTC............................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAAGAATAT-----ATATACTTTATGGGGTCG...........................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGGAAACGGAGTAAATTATCGATT......................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCAC................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAACGGAGTAAATTATCGATT......................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TACATACATTTGGATTTCGCACAAAT............................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAAT.......................................................................................................	27	20	0.10	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AATAT-----ATATACTTTATGGGGT.............................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TCGATTTCTTGGAAACGGAGT..................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGTTACATACATTTGGATTTCGCACA...............................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CTGTTACATACATTTGGATTTCGC..................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTATCGATTTCTTGGAAACGGAGT..................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AGAATAT-----ATATACTTTATGGGGTCGG..........................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AACGGAGTAAATTATCGATTATCG..................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGC------------------TGATCAAGAATAT-----ATATACTTT....................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GATCAAGAATAT-----ATATACTTTATGGG...............................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTTTATCGATTTCTTGGAAAC.......................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AACGGAGTAAATTATCGATTA.....................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACA.........................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAACGGAGTAAATTATCGATTA.....................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGGAAACGGAGTAAATTATCGATTATC...................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TAT-----ATATACTTTATGGGGTCGGAGA.......................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................T-----ATATACTTTATGGGGTCGGA.........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TACATACATTTGGATTTCGCACAA..............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTGGAAACGGAGTAAATTATCGATT......................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ATACATTTGGATTTCGCACAAATACA.........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TGTTACATACATTTGGATTTCGC..................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AAACGGAGTAAATTATCGATTATC...................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATACTTTATGGGGTCGGAGATG.....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTATGGGGTCGGAGATGTTTCCTTC.............................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCTGCCTGTTACATACATTTG..........................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ACGGACATGGCTAGATCGACTCG............................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CATACATTTGGATTTCGCACAAATACAA........................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTATGGGGTCGGAGATGTTTC.................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................TTTATGGGGTCGGAGATGTTTCCT...............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GATCAAGAATAT-----ATATACTTTATGGGG..............................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CGACTCGGCTATTGATGC------------------TG.............................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CTTGGAAACGGAGTAAATTATCGATT......................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAATA......................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ATACATTTGGATTTCGCACAAATACAA........................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGATCAAGAATAT-----ATATACTTTATGG................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TTTATGGGGTCGGAGATGTTTCCTT..............................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTGATGC------------------TGATCAAGAATAT-----ATATACTT.....................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TTATCGATTTCTTGGAAACGGAGT..................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGGAAACGGAGTAAATTATCGA........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CATGGCTAGATCGACTCGGCT.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATG..................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAAGAATAT-----ATATACTTTATGGGGTCGG..........................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TGGGGTCGGAGATGTTTCCTTCTGCC.........................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CTAGATCGACTCGGCTATTGATGC------------------T..............................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GGCTATTGATGC------------------TGATCAAGAAT....................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GATCGACTCGGCTATTGATGC------------------...............................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................TTTGGATTTCGCACAAATA...........................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATACA..............................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TATCGATATCGATTTTTATCGATT.................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ACATTTGGATTTCGCACAAATACAA........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGC------------------TGATCAAGAATAT-----ATATACTTTA...................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTTGGATTTCGCACAAATACAATA......................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTGATGC------------------TGATCAAGAATAT-----ATATACT......................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TTTATGGGGTCGGAGATGTTTCCTTC.............................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACAAATACAG........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TAT-----ATATACTTTATGGGGTCGG..........................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TACATTTGGATTTCGCACA...............................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTACATACATTTGGATTTCGCACAA..............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AGAATAT-----ATATACTTTATGGGG..............................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATATACTTTATGGGGTCGGAG........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAATCCA---------------------CGCGCATC-----TCCCGTTATAGGATTACTATGCAGGCTTTGCCATAGAGAATGTTGTGCCTGCTTATATAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................................GATTACTATGCAGGCTTTGCCATA..........................	24	1	1.00	1	0	0	0	0	1	0

droGri2

A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTACTATGCTGGCTTTGCTATAGAGAACGTTGTACCCGCCTACATAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................................................................................GCTGGCTTTGCTATAGAG.......................	18	1	1.00	1	1	0

droAna3

A------------------TT----------------------------------------------------------------------------------------------------------------------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-----CT-----------TTCAGGATTACTATGCCGGCTTTGCCATAGAGAATGTTGTCCCGGCTTACATAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AAAC--------------------ATGATAAAA------------------------------ATCAG-GATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----CT-----------TTCAGGATTACTATGCTGGCTTTGCCATTGAGAACGTGGTGCCGGCCTATATAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A------------------TC----------------------------------------------------------------------------------------------------------------------TAATAATTTAATTGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TCCAGGACTACTATGCTGGCTTTGCCATAGAAAATGTGGTGCCTGCCTATATAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGGATTACTATGCTGGCTTTGCCATTGAAAACGTTGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTA---------------------CGG---TT-----------TTTAGGATTATTATGCCGGCTTTGCCATAGAAAACGTGGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGGATTATTATGCCGGCTTTGCCATTGAAAACGTGGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A------------------G--------------------------------------------------------------------------------------------------------------------ACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCC------------------TAAGCAAAAATAT-------ATACTTTATAAGGTCGGAAACGCTTCCTTCTAGC-----------------TTTCCGACAAATCTAGTATACGCTTTTATT------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGATCGACTCGGCTAGTGATCC------------------TGATCAAGAATAT-----ATATACTTTATGGGGTCGGAAACGCTTCCTTCTACCTGTTACATAC-------TTTTGCACGAATACAATATACCCTTTTACT------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G------------------------------------------------------------------------------------------------------------------------------------------GACGGACATGGCTCAATCGTCTTCGCAATTGATAC------------------TGATCAAGAATAT-----ATATACTTTATAGGGTCGGAAACGCTTCCTTCTACC-----------------TTTTCAACAAATCTAGTATAACCTTTTACTC-------------TTT-----T------------------------------------------------------------ACC---C	Size	Hit Count	Total Norm	Total
No Reads

dm3

A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGATCGACTCGGCTATTGAACC------------------TGATAAAGAATAT-----TAATACTGTATATGGTCGGAAACGCTTCCTTCTGTCTGTTACATAC-------TTTTCAACGAATCTAGTATACTCTA---------------------C-----GAGTAACGGGTG------CTTTTTCGTGATAGGTTTGCCTTAGGG-----------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................TG------CTTTTTCGTGATAGGTTTGCC.............................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TATATGGTCGGAAACGCTTCCTTC.............................................................................................................................................	24	20	3.20	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	3	0	14	0	0	0	0	0	2	7	0	0	0	0	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TAACGGGTG------CTTTTTCGTGATAGG...................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TAACGGGTG------CTTTTTCGTGATAGGTT.................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................GACATGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	21	20	1.60	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	19	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0
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...............................................................................................................................................................................................................................................TTCTGTCTGTTACATAC-------TTTTCAAA................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ACATGGCTAGATCGACTCGGCT.........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................C-------TTTTCAACGAATCTAGTA......................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CTAGATCGACTCGGCTATTT.....................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AGACGGACATGGCTAGATCGACTCGGC..........................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGA....................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................CATGGCTAGATCGACTCGGCTATTGA....................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G------------------A----------------------------------------------------------------------------------------------------------TCGAG-----ACAGAAGGACATGGCTAGATCGACTCGGCTATTGATCC------------------TGATCAA-----------------------TGGTCGGAAACGCTTCCTTCTGCCAGTAATACAC-------TTTTCAACAAATCTAGTATACCCTTATACTC-------------TAC-----GA-----------GTAACGGTTATTATAATGGCTTT--------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................GATCGACTCGGCTATTGATCC------------------TG.............................................................................................................................................................................................	23	20	5.90	118	0	0	0	0	0	0	0	0	0	0	118	0	0	0	0	0	0
.........................................................................................................................................................GATCGACTCGGCTATTGATCC------------------TGATC..........................................................................................................................................................................................	26	20	2.90	58	0	0	0	21	0	0	0	0	0	0	37	0	0	0	0	0	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------TGATCAA-----------------------T................................................................................................................................................................	27	9	1.33	12	0	0	0	0	0	0	3	8	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................GATCGACTCGGCTATTGATCC------------------T..............................................................................................................................................................................................	22	20	0.70	14	0	0	0	0	0	0	0	0	0	0	12	0	0	2	0	0	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------TGAT...........................................................................................................................................................................................	23	20	0.65	13	0	0	0	0	0	0	1	0	1	10	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................TACCCTTATACTC-------------TAC-----GA-----------GTAACGG................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGA....................................................................................................................................................................................................................	24	20	0.40	8	0	0	0	0	0	0	2	0	3	0	0	0	3	0	0	0	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------TGATCAA-----------------------.................................................................................................................................................................	26	20	0.35	7	0	0	4	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------TGA............................................................................................................................................................................................	22	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.....................................................................................................................................................................................................AA-----------------------TGGTCGGAAACGCTTCCTTCTGC..........................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTAT.......................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGAT...................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................................CTAGATCGACTCGGCTATTGATCC------------------T..............................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0
........................................................................................................................................................AGATCGACTCGGCTATTGATCC------------------TGA............................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	17	20	0.20	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
.........................................................................................................................................................GATCGACTCGGCTATTGATCC------------------TGATCA.........................................................................................................................................................................................	27	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATT......................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATCC------------------...............................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CGACTCGGCTATTGATCC------------------TGATCAA-----------------------T................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GCTAGATCGACTCGGCTATTGATCC------------------...............................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................TCGGCTATTGATCC------------------TGAT...........................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------T..............................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................................GGCTAGATCGACTCGGCTATT......................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................................................ATCGACTCGGCTATTGATCC------------------T..............................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGATCC------------------T..............................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................GGCTATTGATCC------------------TGAT...........................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGATCC------------------TGA............................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................GACATGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................CTAGATCGACTCGGCTATTGATCC------------------TG.............................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................ACTCGGCTATTGATCC------------------TGATCAA-----------------------T................................................................................................................................................................	24	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCGGCTATTGATCC------------------TGATCAA-----------------------T................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TATTGATCC------------------TGATCAA-----------------------T................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................AGATCGACTCGGCTATTGAT...................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------TGATCA.........................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGATCC------------------TGAT...........................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................ACATGGCTAGATCGACTCGGCT.........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATC..................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTG.....................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATCC------------------TG.............................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CTAGATCGACTCGGCTATTGATCC------------------TGC............................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CTCGGCTATTGATCC------------------TGATCAA-----------------------.................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CTAGATCGACTCGGCTATTGA....................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................GGACATGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................GATCGACTCGGCTATTGATCC------------------TGA............................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CGACTCGGCTATTGATCC------------------...............................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGAT...................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................GGACATGGCTAGATCGACTCGGCTA........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGATCC------------------TG.............................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................GGACATGGCTAGATCGACTCGGCT.........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGATC..................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................GGCTAGATCGACTCGGCTATTGAT...................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................ATGGCTAGATCGACTCGGCT.........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATT......................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................TCGGCTATTGATCC------------------TGATCAA-----------------------.................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGATCGACTCGGCTATTGATCC------------------TGATCAAGAATATATACTATATACTTTATGTGGTCGGAAACGTTTCCTTCTGCCTGTTA----------------CAACGAATTTATTATACCCTTTTACTA-------------TAC-----GA-----------GTAACGGGTATAATAATCAGTCGACCATAAAACACGT------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------TGATC..........................................................................................................................................................................................	24	20	1.95	39	38	0	0	1
............................................................................................................................................................CGACTCGGCTATTGATCC------------------TGATC..........................................................................................................................................................................................	23	20	0.25	5	5	0	0	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGATCC------------------TGA............................................................................................................................................................................................	26	20	0.20	4	2	0	2	0
.............................................................................................................................................CGGACATGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	23	20	0.15	3	0	0	3	0
................................................................................................................................................................................................................................................................................................TTACTA-------------TAC-----GA-----------GTAACGGGT..............................................	20	7	0.14	1	0	0	1	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATC..................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0
...........................................................................................................................................GACGGACATGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0
.......................................................................................................................................................TAGATCGACTCGGCTATTGATCC------------------TG.............................................................................................................................................................................................	25	20	0.10	2	2	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGATCC------------------...............................................................................................................................................................................................	27	20	0.10	2	2	0	0	0
...........................................................................................................................................GACGGACATGGCTAGATCGACTCGGC..........................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
............................................................................................................................................................CGACTCGGCTATTGATCC------------------TGATCAAGA......................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------...............................................................................................................................................................................................	19	20	0.05	1	0	0	1	0
.............................................................................................................................................CGGACATGGCTAGATCGACTCGGCTAT.......................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
...................................................................................................................................................TGGCTAGATCGACTCGGCTATTGAT...................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
......................................................................................................................................................CTAGATCGACTCGGCTATTGATCC------------------TG.............................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
...............................................................................................................................................GACATGGCTAGATCGACTCGGCTAT.......................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
.............................................................................................................................................CGGACATGGCTAGATCGACTCGGCT.........................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
...........................................................................................................................................................TCGACTCGGCTATTGATCC------------------TGATCAA........................................................................................................................................................................................	26	20	0.05	1	0	0	1	0
.............................................................................................................................................CGGACATGGCTAGATCGACTCGGC..........................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
.................................................................................................................................................................CGGCTATTGATCC------------------TGATCAAG.......................................................................................................................................................................................	21	20	0.05	1	0	1	0	0
A----------------------------------------------------------------------------------------------------------------------------------------CAGACGGACATGGCTAGATCGACTC.............................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0
...............................................................................................................................................................CTCGGCTATTGATCC------------------TGATCAAGAAT....................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.........................................................................................................................................CAGACGGACATGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0
........................................................................................................................................................AGATCGACTCGGCTATTGATC..................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
..........................................................................................................................................AGACGGACATGGCTAGATCGACTCGG...........................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
............................................................................................................................................................CGACTCGGCTATTGATCC------------------TGA............................................................................................................................................................................................	21	20	0.05	1	0	1	0	0

droYak3

CAGTTGATGAGATTCTTAAAGATATCGACAGGA------------------------------ACTAC-GATTATCTTAAGGTAATTTCTTTAAACTTAATGTTCT--TAATGTTATTATACCCGTTACTCGTAGAGTAAAAGGGTATAGT-AGATTCGTTCTATTCGTCACTATGCTTAGTGACGGGTATCAGAT---------------------------AGTCGGGAGTCT-----------------------------------CGACTATAGCATACTCTCTTATTTTAACTAACATTAATTT-----AT-----------TTTAGGACTACTATGCTGGCTTTGCCATAGAGAACGTTGTGCCCGCCTACATAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................CACTATGCTTAGTGACGGGT..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................CGTAGAGTAAAAGGGTATAGT-AGA....................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCGTAGAGTAAAAGGGTATAGT-AGA....................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCGTAGAGTAAAAGGGTATAGT-.......................................................................................................................................................................................................................................	22	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

T------------------TC------------------------------------------------------------------------------------------------------------AT-----ACGGACGAACATGGCCAGATCGACTCGGCTATTGATCC------------------TGATCAAGAATATAT---ATATACTTTATATGGTCGGAAACGATTTCTTGTAGCTGTTACATAT-------TTTTCAACGAATATAGTATACCCTTTTACTG-------------TAT-----TAGTAACGGGTA-----TAAC-----TATTACCGTTGCAATATAATAGGTTG----------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-40.4	-40.4	-40.3	-40.3

dpe_1873

scaffold_6:726949-727123 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads