ID:

dpe_1862

 Coordinate:

scaffold_59:262923-263073 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.4 -39.0 -38.9

Flybase annnotation

CDS [Dper\GL10998-cds]; exon [dper_GLEANR_1112:2]; intron [Dper\GL10998-in]

No Repeatable elements found

mature
  1. dpe_1862  scaffold_59:262974-262993 -
  2. scaffold_11171:504-523 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGGCAAAAGGCCTGCAGATCCACCACAAAGGGGAGGTCCAACATCGCCAAAAAAATTGTTAAATTCCCTCAAGCAAAGCCATCTCAATCTGCAATGGATTTATCAACTGATGTTGAACTGTGCGGAGTTCCAACACGAGTGCGAGTGCCAGCAGCGACCATACCAAATGCTGTCGGCCCCTCACGTGTTACTCCCACAGCACAAGCAGCCCCTCTGGTACCACCTGCTATTGAATCCCGACCCACCAAA
**************************************************.......(((((...........)))))..((((..((...))..)))).....(((((....))))).(((((.(((((...((((((.....(((.(((.(((((.............))))).)))..))).))))))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 M021
embryo
.............................AAGGGGAGGCCCTACATTGCCA........................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0
..................................................................................................................................TCCAACACGAGTGCGAGTGC..................................................................................................... 20 0 2 1.00 2 0 2 0
........................................................................................................................TGCGTGGAGTTCCAACACGGGT............................................................................................................. 22 3 1 1.00 1 1 0 0
.................................................................................................................................TTCCAACACGAGTGCGAGT....................................................................................................... 19 0 3 0.67 2 0 2 0
..........................................................................................................................................TTGTGCGAGTGCCAGCAGCG............................................................................................. 20 2 2 0.50 1 1 0 0
............................................................................................................CTGAGGTTGAAGTTTGCGGAG.......................................................................................................................... 21 3 2 0.50 1 0 1 0
..............................................................................................................GATGTTGACCTGTGCTGA........................................................................................................................... 18 2 3 0.33 1 0 0 1
...................................................AAAAAATTGTTAAATTCA...................................................................................................................................................................................... 18 1 11 0.18 2 0 2 0
...............................................................................................................................................................................................................CAGCCCCTCTTCTACCAGCTGC...................... 22 3 6 0.17 1 1 0 0
.........................................................................................................................................CAAGTGCGCGTGCCAGCAGCT............................................................................................. 21 3 10 0.10 1 1 0 0
.........................................................................................................................................CGGGTGCGAGTGCCAGCGGCT............................................................................................. 21 3 18 0.06 1 1 0 0

Anti-sense strand reads

GTTCCGTTTTCCGGACGTCTAGGTGGTGTTTCCCCTCCAGGTTGTAGCGGTTTTTTTAACAATTTAAGGGAGTTCGTTTCGGTAGAGTTAGACGTTACCTAAATAGTTGACTACAACTTGACACGCCTCAAGGTTGTGCTCACGCTCACGGTCGTCGCTGGTATGGTTTACGACAGCCGGGGAGTGCACAATGAGGGTGTCGTGTTCGTCGGGGAGACCATGGTGGACGATAACTTAGGGCTGGGTGGTTT
**************************************************.......(((((...........)))))..((((..((...))..)))).....(((((....))))).(((((.(((((...((((((.....(((.(((.(((((.............))))).)))..))).))))))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
..............................................................................................................................................................................AGCCGGGGAGTGCACAAT........................................................... 18 0 1 1.00 1 1 0 0
............................................................................................................................GCCTCAAGGTTGTGCTCACGCT......................................................................................................... 22 0 2 1.00 2 2 0 0
........................................................................................TAGACGTTACCTAGATAGTTGACT........................................................................................................................................... 24 1 1 1.00 1 1 0 0
.....................................................................................................................................................GGTCGGCGCTGGTATGTTTTA................................................................................. 21 2 1 1.00 1 0 0 1
...................................................................................................................................................................................GGGAGTGCACAATGAGGGT..................................................... 19 0 3 0.67 2 1 1 0
.................................................................................................................................................................................CGGGGAGTGCACAATGAGGGT..................................................... 21 0 3 0.67 2 0 2 0
.................................................................................................................................AAGGTTGTGCTCACGCTCACG..................................................................................................... 21 0 2 0.50 1 1 0 0
....................................................................................................................................GTTGTGCTCACGCTCACGGT................................................................................................... 20 0 2 0.50 1 0 1 0
....................................................................................................................................................................................TGAGTGCACAATGAGGGTGT................................................... 20 1 3 0.33 1 0 1 0
................................................................................................................................................................................CCGGGGAGTGCACAATGAGG....................................................... 20 0 3 0.33 1 1 0 0
...........................................................................................................TGACTACTACTTGACACGCCTCAAGGTT.................................................................................................................... 28 1 3 0.33 1 1 0 0
...............................................................................................................................................................................GCCGGGGAGTGCACAATGAGGG...................................................... 22 0 3 0.33 1 1 0 0
................................................................................................................................................................................CCGGGGAGTGCACAATGAGGGTGT................................................... 24 0 3 0.33 1 0 1 0
.........................................................................................................GTTGACTACAACTTAGCACGCT............................................................................................................................ 22 3 3 0.33 1 0 0 1
..................................................................................................................TACTTGACACGCCTCAAGGTT.................................................................................................................... 21 1 3 0.33 1 1 0 0
..................................................................................................................................................................................TGGGAGTGCATAATGAGGGTGT................................................... 22 2 3 0.33 1 0 1 0
..............................................................................................................................................................................CGCCGGGGAGTGCACAAT........................................................... 18 1 3 0.33 1 1 0 0
..................................................................................................................................................................................AAGGAGTGCACAATGAGGG...................................................... 19 2 3 0.33 1 0 1 0
....................................................................................................................................................................................GGAGTGCACAATGAGGGTGTCGTGT.............................................. 25 0 3 0.33 1 1 0 0
...........................................................................................................TGACTACTACTTGACACGCCTCAAGGT..................................................................................................................... 27 1 3 0.33 1 1 0 0
.............................................................................................................ACTACTACTTGACACGCCTCAAGGT..................................................................................................................... 25 1 3 0.33 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_59:262873-263123 - dpe_1862 CAAGGCAAAAGGCCTGCAGATCCACCACAAAGGGGAGGT-----------CCAACATCGCCAAAA-AAATTGTTAAATTCCCTCAAGCAAAGCCATCTCAATCTGCAATGGATTTATCAACTGATGTTGAACTGTGCGGAGTTCCAACACGAGTGCGAGTGCCAGCAGCGACCATACCAAATGCTGTCGGCCCCTCACGTGTTACTCCCACAGCACAAGCAGCCCCTCTGGTACCACCTGCTATTGAATCCCGACCCACCAAA
dp5 Unknown_group_388:3910-4148 + CAAGGCAAAAGGCCTGCAGATCCAC-------------TCTCCCCTTTGTCCAACATCGCCAAAAAAAATTGTTAAATTCCCTCAAGCAAAGCCATCTCAATCTGCAATGGATTTATCAACTGATGATGAACTGTGCGGAGTTCCAACACGAGTGCGAGTGCCAGCAGCGACCATACCAAATGCTGTCGGCCCCTCACGTGTTACTCCCACAGCACAAGCA-----------ACCACCTGCTATTGAATCCCGACCCACCAAA
droAna3 scaffold_13045:901443-901444 + CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CAAGGCAAAAGGCCTGCAGATCCACCACAAAGGGGAGGT-----------CCAACATCGCCAAAA-AAATTGTTAAATTCCCTCAAGCAAAGCCATCTCAATCTGCAATGGATTTATCAACTGATGTTGAACTGTGCGGAGTTCCAACACGAGTGCGAGTGCCAGCAGCGACCATACCAAATGCTGTCGGCCCCTCACGTGTTACTCCCACAGCACAAGCAGCCCCTCTGGTACCACCTGCTATTGAATCCCGACCCACCAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................TCCAACACGAGTGCGAGTGC.....................................................................................................2021.002020000
.............................................................................................................................................TTCCAACACGAGTGCGAGT.......................................................................................................1930.672020000
..............................................................AAA-AAATTGTTAAATTCA......................................................................................................................................................................................18110.182020000
dp5
CAAGGCAAAAGGCCTGCAGATCCAC-------------TCTCCCCTTTGTCCAACATCGCCAAAAAAAATTGTTAAATTCCCTCAAGCAAAGCCATCTCAATCTGCAATGGATTTATCAACTGATGATGAACTGTGCGGAGTTCCAACACGAGTGCGAGTGCCAGCAGCGACCATACCAAATGCTGTCGGCCCCTCACGTGTTACTCCCACAGCACAAGCA-----------ACCACCTGCTATTGAATCCCGACCCACCAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droAna3
CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads

Generated: 06/08/2015 at 04:49 PM