ID:

dpe_1842

 Coordinate:

scaffold_56:10264-10359 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL22467-cds]; exon [dper_GLEANR_471:2]; exon [dper_GLEANR_471:1]; CDS [Dper\GL22467-cds]; intron [Dper\GL22467-in]

No Repeatable elements found

mature
  1. dpe_1842  scaffold_56:10333-10358 -
  2. scaffold_52:292079-292104 +
  3. scaffold_4823:432-457 -
star
  1. dpe_1842  scaffold_56:10264-10291 -
  2. scaffold_52:292146-292173 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------##################################################
TGTCGACTCAACCCAATTCCGCTGACCATATTCAGCAGAGCGTCGATGCGGTAAGTAGCAAAAGTCCGAATTTGAAAGACGTTGCTGCTGCTTTGCACCGTCTTTCACAGAAGGTTGATAAGCTACAACACAACATCCCCAAAAAGCCCAAGGTTTCCCATGGCACGAACGTAGATGATGTGCAGTCGGTGGTCGT
***************************************************...(((((......((.....(((((((((.(((.........))).))))))))).....)).......)))))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body		 V050
head
...........................................................................................................................................................TCCCATGGCACGAACGTAGATGATG................ 25 0 1 14.00 14 14 0 0 0 0
......................TGACCATATTCAGCAGAGCGTCGATG.................................................................................................................................................... 26 0 2 12.00 24 20 4 0 0 0
...................................................TAAGTAGCAAAAGTCCGAATTTGAAA....................................................................................................................... 26 0 3 7.33 22 21 0 0 0 1
......................................................................................................................TAAGCTACAACACAACATCCCCAAAAAG.................................................. 28 0 2 7.00 14 14 0 0 0 0
..........................................................................................................................................................TTCCCATGGCACGAACGTAGATGATG................ 26 0 1 6.00 6 6 0 0 0 0
.................................................................................................................................................GCCCAAGGTTTCCCATGGCACGAACG......................... 26 0 2 5.50 11 11 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCCCAAAAA................................................... 27 0 2 4.50 9 9 0 0 0 0
.........................................................................................................................................................TTTCCCATGGCACGAACGTAGATGATG................ 27 0 1 4.00 4 3 0 0 1 0
............................TATTCAGCAGAGCGTCGATGCGG................................................................................................................................................. 23 0 4 3.50 14 12 2 0 0 0
.................TCCGCTGACCATATTCAGCAGAGCGTCGA...................................................................................................................................................... 29 0 2 3.50 7 7 0 0 0 0
........................................................................................................TCACAGAAGGTTGATAAGCTACAACAC................................................................. 27 0 1 3.00 3 3 0 0 0 0
................TTCCGCTGACCATATTCAGCAGAGCGT......................................................................................................................................................... 27 0 2 3.00 6 6 0 0 0 0
...........................................................................................................................................................................TAGATGATGTGCAGTCGGTGG.... 21 0 1 3.00 3 3 0 0 0 0
...........................................................................................................................................................................TAGATGATGTGCAGTCGGTGGTC.. 23 0 1 3.00 3 3 0 0 0 0
.....................................................................................TGCTGCTTTGCACCGTCTTTCACAG...................................................................................... 25 0 1 3.00 3 3 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCCCAA...................................................... 24 0 3 2.67 8 8 0 0 0 0
..................................................................................................................................................CCCAAGGTTTCCCATGGCACGAACG......................... 25 0 2 2.50 5 5 0 0 0 0
...........................................................................................................................................................................TAGATGATGTGCAGTCGG....... 18 0 1 2.00 2 2 0 0 0 0
................................................................TCCGAATTTGAAAGACGTTGCTGCTG.......................................................................................................... 26 0 2 2.00 4 4 0 0 0 0
.................TCCGCTGACCATATTCAGCAGAGCGTCG....................................................................................................................................................... 28 0 2 2.00 4 4 0 0 0 0
........................................................................TGAAAGACGTTGCTGCTGCTTTGCACC................................................................................................. 27 0 1 2.00 2 1 1 0 0 0
...........................................................................................................................................................................TAGATGATGTGCAGTCGGTGGTCG. 24 0 1 2.00 2 2 0 0 0 0
....GACTCAACCCAATTCCGCTGACCATAT..................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
..............................................TGCGGTAAGTAGCAAAAGTCCGAATT............................................................................................................................ 26 0 3 2.00 6 6 0 0 0 0
.....................................................................................TGCTGCTTTGCACCGTCTTTCACA....................................................................................... 24 0 1 2.00 2 2 0 0 0 0
......................TGACCATATTCAGCAGAGCGTCGA...................................................................................................................................................... 24 0 2 2.00 4 4 0 0 0 0
................TTCCGCTGACCATATTCAGCAGAGCG.......................................................................................................................................................... 26 0 2 1.50 3 3 0 0 0 0
......................TGACCATATTCAGCAGAGCGTCGAT..................................................................................................................................................... 25 0 2 1.50 3 3 0 0 0 0
....................................................................................................................................................CAAGGTTTCCCATGGCACGAACGTAGA..................... 27 0 2 1.50 3 3 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCTCAAAAAG.................................................. 28 1 2 1.50 3 2 0 0 1 0
......................TGACCATATTCAGCAGAGCGTCGATGC................................................................................................................................................... 27 0 2 1.50 3 1 2 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCCCAAA..................................................... 25 0 3 1.33 4 4 0 0 0 0
...................................................TAAGTAGCAAAAGACCGAATTTGAAA....................................................................................................................... 26 1 3 1.33 4 3 0 0 1 0
..............................................TGCGGTAAGTAGCAAAAGTCCGAAT............................................................................................................................. 25 0 3 1.33 4 4 0 0 0 0
........................................................................TGAAAGACGTTGCTGCTGCTTTGCAC.................................................................................................. 26 0 4 1.25 5 3 2 0 0 0
..............................................................................................................................................................CATGGCACGAGCGTAGATGATGTGC............. 25 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................CCCCAAAAAGCCCAAGGTTTCCCATG.................................. 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................CCCATGGCACGAACGTAGATGATGT............... 25 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................TGGCACGATCGTAGATAATGTGC............. 23 2 1 1.00 1 1 0 0 0 0
........................................................................TGAAAGACGTTGCTGCTGCTT....................................................................................................... 21 0 4 1.00 4 2 2 0 0 0
..............................................................................................................................................................................ATGATGTGCAGTCGGTGGTCG. 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................GGCACGAACGTAGATGATGTGC............. 22 0 1 1.00 1 0 0 1 0 0
........................................................................................TGCTTTGCACCGTCTTTCACAGAAGGT................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................CACGAACGTAGATGATGTGCAGTCG........ 25 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................AAGCTACAACACAACATCCTCAAAAAG.................................................. 27 1 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................TCCCATGGCACGGACGTAGATGATG................ 25 1 1 1.00 1 1 0 0 0 0
..........................................................................................CTTTGCACGGTCTTTCACAGAAGG.................................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................TGATGTGCAGTCGGTGGTCGT 21 0 1 1.00 1 1 0 0 0 0
..................................................................................TGCTGCTGCTTTGCACCGTCTTTCACA....................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................TAGATGATGTGCAGTCGGTAG.... 21 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................TAGATGATGTGCAGTCGGTTGTC.. 23 1 1 1.00 1 0 0 1 0 0
........................................................................................................................................................................ACGTAGATGATGTGCAGTC......... 19 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................TTTCCCATGGCACGAACGTAGATGATGT............... 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................GTAGATGATGTGCAGTCGGTG..... 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................TAGATGATGTGCAGTCGGTG..... 20 0 1 1.00 1 1 0 0 0 0
............................TATTCAGCAGAGCGTCGATGC................................................................................................................................................... 21 0 4 1.00 4 0 4 0 0 0
...............................................................................................CACCGTCTTTCACAGAAGGTTG............................................................................... 22 0 1 1.00 1 1 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCCCA....................................................... 23 0 3 1.00 3 3 0 0 0 0
...................CGCTGACCATATTCAGCAGAGCGTCGA...................................................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0
..........................................................................................................................................................TTCCCATGTCACGAACGTAGATGATG................ 26 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................................TCCCCAAAAAGCCCAAGGTTTCCCAT................................... 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................GTAGATGATGTGCAGTCGGTGGTC.. 24 0 1 1.00 1 1 0 0 0 0
.................TCCGCTGACCATATTCAGCAGAGCGTC........................................................................................................................................................ 27 0 2 1.00 2 2 0 0 0 0
.....................................................................................................................................................................CAAACGTACATGATGTGCAGTCGGTG..... 26 2 1 1.00 1 1 0 0 0 0
..................................................................................TGCTGCTGCTTTGCACCGTCTT............................................................................................ 22 0 1 1.00 1 1 0 0 0 0
.............CAATTCCGCTGACCATATTCAGCAG.............................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
........................................................................................TGCTTTGCACCGTCTTTCACAGAAGG.................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................TGCTGCTTTGCACCGTCTTTCACAA...................................................................................... 25 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................ACGTAGATGATGTGCAGTCGGTGG.... 24 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................GAACGTAGTTGATGTGCAGTCGGTGG.... 26 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................CCATGGCACGAACGTAGATGATGTG.............. 25 0 1 1.00 1 1 0 0 0 0
.......................................................................................CTGCTTTGCACCGTCTTTCACAGAA.................................................................................... 25 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................AGATGATGTGCAGTCGGTGGTT.. 22 1 1 1.00 1 1 0 0 0 0
.....................................................................................TGCTGCTTTGCACCGTCTTTCAC........................................................................................ 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................TCCCATGGCACGAACGTAGATGATGT............... 26 0 1 1.00 1 1 0 0 0 0
................TTCCGCTGGCCATATTCAGCAGAGCGT......................................................................................................................................................... 27 1 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................TCCCATGGCACGAACGTAGCTGATG................ 25 1 1 1.00 1 0 0 1 0 0
........................................................................................TGCTTTGCACCGTCTTTCACAGA..................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................GCCCATGGCACGAACGTAGATGATGT............... 26 1 1 1.00 1 1 0 0 0 0
.....................................................................................TGCTGCTTTGCACCGTCTA............................................................................................ 19 1 1 1.00 1 1 0 0 0 0
......................TGACCATAATCAGCAGAGCGTCGATG.................................................................................................................................................... 26 1 2 1.00 2 2 0 0 0 0
........................................................................TGAAAGACGTTGCTGCTGCTTTGCACCG................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
........................................................................................TGCTTTGCGCCGTCTTTCACAGAAGGT................................................................................. 27 1 1 1.00 1 1 0 0 0 0
......................................................................TTTGAAAGACGTTGCTGCTG.......................................................................................................... 20 0 4 0.75 3 3 0 0 0 0
.......................................................TAGCAAAAGACCGAATTTGAAAGACGT.................................................................................................................. 27 1 3 0.67 2 2 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCCCCAA...................................................... 27 0 3 0.67 2 2 0 0 0 0
...................................................TAAGTAGCAAAAGTCCGAATTTGA......................................................................................................................... 24 0 3 0.67 2 1 0 0 1 0
...................................................TAAGTAGCAAAAGTCCGAATTTGAAAG...................................................................................................................... 27 0 3 0.67 2 2 0 0 0 0
...................................................TAAGTAGCAAAAGACCGAATTTGAAAG...................................................................................................................... 27 1 3 0.67 2 2 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCCTCAA...................................................... 27 1 3 0.67 2 2 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCTCAA...................................................... 24 1 3 0.67 2 2 0 0 0 0
...................................................TAAGTAGCAAAAGTCCGAATTTGAA........................................................................................................................ 25 0 3 0.67 2 2 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCTCAAAA.................................................... 26 1 2 0.50 1 1 0 0 0 0
......................TGACCATATTCAGCAGAGCGT......................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
.........................................................................................................................................................TTTCCCATTGCACGAACGTAGATGA.................. 25 1 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................TTTCCCATGGCACGAACGTAGATGA.................. 25 0 2 0.50 1 1 0 0 0 0
......................TGACCATACTCAGCAGAGCGTCGATG.................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0
......................TGACCATAGTCAGCAGAGCGTCGATG.................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0
........................................................................................................................AGCTACAACACAACATCCCCAAAAAGCC................................................ 28 0 2 0.50 1 1 0 0 0 0
......................TGACCATATTCAGCAGAGCGTCGATGCGG................................................................................................................................................. 29 0 2 0.50 1 0 1 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCCCAAAA.................................................... 26 0 2 0.50 1 1 0 0 0 0
......................................................................................................................TAAGCTACGACACAACATCCTCAAAAA................................................... 27 2 2 0.50 1 1 0 0 0 0
.....................................................................................................................TTAAGCTACAACACAACATCCCCAAAAAG.................................................. 29 1 2 0.50 1 1 0 0 0 0
.......................GACCATATTCAGCAGAGCGTCGATG.................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................AGGTTTCCCATGGCACGAACGTAGA..................... 25 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................AGCCCAAGGTTTCCCATGGCACGAACG......................... 27 0 2 0.50 1 1 0 0 0 0
.....................ATGACCATATTCAGCAGAGCGTCGA...................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
................TTCCGCTGACCATATTCAGCAGAGC........................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
......................TGACCATATTCAGCAGAGC........................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
.........................................................................GAAAGACGTTGCTGCTGCTA....................................................................................................... 20 1 4 0.50 2 1 1 0 0 0
......................................................................................................................GAAGCTACAACACAACATCCCCAAAAA................................................... 27 1 2 0.50 1 1 0 0 0 0
....................GCTGACCATATTCAGCAGAGCGTC........................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................TTTCCCATGGCACGAACGTAGATGAA................. 26 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................AAGCTACAACACAACATCCCCAAAAA................................................... 26 0 2 0.50 1 1 0 0 0 0
.................GCCGCTGACCATATTCAGCAGAGCGT......................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0
................................................................TCCGAATTTGAAAGACGTTGCTGCTGC......................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
...................CGCTGACCATATTCAGCAGAGCGTCGAAA.................................................................................................................................................... 29 2 2 0.50 1 0 1 0 0 0
....................GCTGACCATATTCAGCAGAGCGTCGATG.................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
...............................................................GTCCGAATTTGAAAGACGTTGCTG............................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................AAGCTACAACACAACATCCCCAAAAAG.................................................. 27 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................TCCCATGGCACGAACGTAGATGAT................. 24 0 2 0.50 1 1 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCCC......................................................... 24 0 4 0.50 2 2 0 0 0 0
................................................................................................................................................AGCCCAAGGTTTCCCATGGCACGGAC.......................... 26 1 2 0.50 1 1 0 0 0 0
......................TGACCATAGTCAGCAGAGCGTCGATGC................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
.............................................................AAGTCCGAATTTGAAAGACGTTGCTG............................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................AGCCCAAGGTTTCCCATGGCACGAA........................... 25 0 2 0.50 1 1 0 0 0 0
...............................TCAGCAGAGCGTCGATGCGGTAAGTA........................................................................................................................................... 26 0 4 0.50 2 2 0 0 0 0
....................................................................................................................................................CAAGGTTTCCCATGGCACGAACGTA....................... 25 0 2 0.50 1 1 0 0 0 0
.................TCCGCTGACCATATTCAGCAGAGCGT......................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................AAGGTTTCCCATGGCACGAACGTAGAA.................... 27 1 2 0.50 1 1 0 0 0 0
................................................................TCCGAATTTGAAAGACGTTGCTGCT........................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
..................CCGCTGACCATATTCAGCAGAGCG.......................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCTCAAAAA................................................... 27 1 2 0.50 1 1 0 0 0 0
......................TGACCATATTCAGCAGAGCG.......................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................AAGCTACAACACAACATCCTCAAAA.................................................... 25 1 2 0.50 1 1 0 0 0 0
.......................................................................TTGAAAGACGTTGCTGCTGCTTTGCAC.................................................................................................. 27 0 4 0.50 2 1 1 0 0 0
......................TGACCATATTCAGCAGAGCGTCGATGCG.................................................................................................................................................. 28 0 2 0.50 1 1 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCCCAAAAAA.................................................. 28 1 2 0.50 1 1 0 0 0 0
.......................GACCATATTCAGCAGAGCGTCGATGC................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................CCCAAGGTTTCCCATGGCACGAACGTA....................... 27 0 2 0.50 1 1 0 0 0 0
............................................................AAAGTCCGAATTTGAAAGACGTTG................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCCCC........................................................ 25 0 3 0.33 1 1 0 0 0 0
...................................................TAAGTAGCGAAAGTCCGAATTTGAAAGA..................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCTCT....................................................... 23 2 3 0.33 1 1 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCCCCA....................................................... 26 0 3 0.33 1 1 0 0 0 0
...................................................TAAGTAGCGAAAGTCCGAATTTGAAA....................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
....................................................AAGTAGCAAAAGTCCGAATTTGAAAGA..................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
...................................................GAAGTAGCAAAAGTCCGAATTTGAAA....................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
.................................................................CCGAATTTGAAAGACGTTGCTGCTG.......................................................................................................... 25 0 3 0.33 1 0 0 0 1 0
.......................................................TAGCAAAAGTCCGAATTTGAAAGACG................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
.......................................................TAGCAAAAGTCCGAATTTGAAAGACGT.................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0
..................................................................CGAATTTGAAAGACGTTGCTGCT........................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
....................................................................................................................GATAAGCTACAACACAACATCCTCAA...................................................... 26 1 3 0.33 1 1 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCCTC........................................................ 25 1 3 0.33 1 1 0 0 0 0
.......................................................................................................................AAGCTACAACACAACATCCCCAA...................................................... 23 0 3 0.33 1 1 0 0 0 0
........................................................AGCAAAAGTCCGAATTTGAAAGACGT.................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
...................................................TAAGTAGCAAAAGTCCGAATTTGAAAA...................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0
...................................................TAAGTAGCAAAAGTCCGAATT............................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0
...................................................TAAGTAGCAAAAGTCCGAATTTGAAAGA..................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0
...................................................TAAGTAGCAAAAGTCCGAATTTG.......................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
...................................................................................................................TGATAAGCGACAACACAACATCCCCAA...................................................... 27 1 3 0.33 1 1 0 0 0 0
......................................................................................................................TAAGCTACAACACAACATCCTCAAA..................................................... 25 1 3 0.33 1 1 0 0 0 0
...............................................GCGGTAAGTAGCAAAAGACCGAATT............................................................................................................................ 25 1 3 0.33 1 1 0 0 0 0
...................................................TAAGTAGCAAAAGACCGAATTTG.......................................................................................................................... 23 1 3 0.33 1 1 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCCTCA....................................................... 26 1 3 0.33 1 1 0 0 0 0
..................................................................................................................TTGATAAGCTACAACACAACATCCCCA....................................................... 27 0 3 0.33 1 1 0 0 0 0
..............................................................................................................AAGGTTGATAAGCTACAACACAACATC........................................................... 27 0 4 0.25 1 1 0 0 0 0
.........................................................................GAAAGACGTTGCTGCTGCTTTG..................................................................................................... 22 0 4 0.25 1 1 0 0 0 0
...............................TCAGCAGACCGTCGATGCGGTAAA............................................................................................................................................. 24 2 4 0.25 1 0 0 1 0 0
.......................................................................TTGAAAGACGTTGCTGCTGCC........................................................................................................ 21 1 4 0.25 1 0 1 0 0 0
............................TATTCAGCAGAGCGTCGATGCGGTA............................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
..........................................................................AAAGACGTTGCTGCTGCTTTG..................................................................................................... 21 0 4 0.25 1 1 0 0 0 0
.............................ATTCAGCAGAGCGTCGATGCGGTAAG............................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
.......................................................................TTGAAAGAGGTTGCTGCTGCTTTCCAC.................................................................................................. 27 2 4 0.25 1 1 0 0 0 0
......................................................................TTTGAAAGACGTTGCTGCTGCTT....................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
..........................................TCGATGCGGTAAGTAGCAAAAGTCCG................................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
........................................................................TGAAAGACGTTGCTGCTGCTTT...................................................................................................... 22 0 4 0.25 1 1 0 0 0 0
........................................................................TGAAAGACGTTGCTGCTGCTTTG..................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
..........................................................................AAAGACGTTGCTGCTGCTTTGC.................................................................................................... 22 0 4 0.25 1 1 0 0 0 0
......................................................................TTTGAAAGACGTTGCTGCTGCTTT...................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
................................CAGCAGAGCGTCGATGCGGT................................................................................................................................................ 20 0 4 0.25 1 0 0 1 0 0
......................................................................TTTGAAAGACGTTGCTGCTGCTTTGCAC.................................................................................................. 28 0 4 0.25 1 1 0 0 0 0
............................TATTCAGCAGAGCGTCGATGCGGTAAAA............................................................................................................................................ 28 2 4 0.25 1 1 0 0 0 0
.......................................................................TTGAAAGACGTTGCTGCTGCTTT...................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
...................................................................................................................TGATAAGCTACAACACAACATCC.......................................................... 23 0 4 0.25 1 1 0 0 0 0
........................................................................TGAAAGACGTTGCTGCTGC......................................................................................................... 19 0 4 0.25 1 1 0 0 0 0
............................TATTCAGCCGAGCGTCGATGCGG................................................................................................................................................. 23 1 4 0.25 1 1 0 0 0 0
...............................TCAGCAGAGCGTCGATGCGGTAAG............................................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0
............................TATTCAGCAGAGCGTCGATGCGGT................................................................................................................................................ 24 0 4 0.25 1 0 0 1 0 0
...........................................CGATGCGGTAAGTAGCAAAAA.................................................................................................................................... 21 1 5 0.20 1 1 0 0 0 0
..............................................TGCGGTAAGTAGCAAAAGTCCGAATA............................................................................................................................ 26 1 6 0.17 1 1 0 0 0 0
..............................................TGCGGTAAGTAGCAAAAGTCCGAAA............................................................................................................................. 25 1 6 0.17 1 1 0 0 0 0
..............................................................................................................AAGGTTGATAAGCTACAACA.................................................................. 20 0 6 0.17 1 1 0 0 0 0

Anti-sense strand reads

ACAGCTGAGTTGGGTTAAGGCGACTGGTATAAGTCGTCTCGCAGCTACGCCATTCATCGTTTTCAGGCTTAAACTTTCTGCAACGACGACGAAACGTGGCAGAAAGTGTCTTCCAACTATTCGATGTTGTGTTGTAGGGGTTTTTCGGGTTCCAAAGGGTACCGTGCTTGCATCTACTACACGTCAGCCACCAGCA
**************************************************...(((((......((.....(((((((((.(((.........))).))))))))).....)).......)))))....................*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 V057
head
 M021
embryo
........................................................................................................AGTGTCTTCCAACTATTCGATGTT.................................................................... 24 0 1 3.00 3 3 0 0 0 0
......................................................................................................................................................TCCAAAGGGTACCGTGCTTGCATCTACT.................. 28 0 2 1.00 2 1 1 0 0 0
......................................................................................................AAAGTGTCTTCCAACTAGTCGATGTT.................................................................... 26 1 1 1.00 1 1 0 0 0 0
.........TTGGGTTAAGGCGACTGGT........................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.....................................................................................................GAAAGTGTCTTCCAACTATTCGATGTT.................................................................... 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGTCTTCCAACTATTCGATGTT.................................................................... 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................GGGTACCGTGCTTGCATCTACT.................. 22 0 2 0.50 1 0 1 0 0 0
...................GCGACTGGTATAAGTCGTCTC............................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................GGGTACCGTGCTTGCATCTACTA................. 23 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................AAAGGGTACCGTGCTTGCATCTACT.................. 25 0 2 0.50 1 1 0 0 0 0
.........................................................................................................GTGTCTTCCAACTATTCGATGTT.................................................................... 23 0 3 0.33 1 0 0 1 0 0
...........................................................................................................................................................AGGGTACCGTGCTTGCAT....................... 18 0 3 0.33 1 1 0 0 0 0
.........................................................................................................GTGTCTTCCAACTAATCGATGTT.................................................................... 23 1 3 0.33 1 1 0 0 0 0
...............................................................................................................................TGCGTTGTAGGTGTATTTCGGG............................................... 22 3 3 0.33 1 0 0 0 1 0
..........................................................................................................TGTCTTCCAACTATTCGATGT..................................................................... 21 0 3 0.33 1 1 0 0 0 0
......................................................................................................................................................TCCAACGGGTACCGTGCTTGCAT....................... 23 1 4 0.25 1 0 0 1 0 0
...................................GTCTCGCAGCTACGCCATTCATCGTT....................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
...............................AGTCGTCTCGCAGCTACGCCATT.............................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0
.....................................CTCGCAGCTACGCCATTCATCGT........................................................................................................................................ 23 0 5 0.20 1 1 0 0 0 0
....................................TCTCGCAGCTACGCCATTCAT........................................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0
..................................................................................................................................................GGGTACCAAAGGGTACTTTG.............................. 20 3 7 0.14 1 0 0 0 1 0
.......................................CGCAGCTACGCCAGTCATCGTT....................................................................................................................................... 22 1 7 0.14 1 1 0 0 0 0
........................................GCAGCTACGCCATTCATCGT........................................................................................................................................ 20 0 7 0.14 1 1 0 0 0 0
................................GACGGCTCGCAGCTACGC.................................................................................................................................................. 18 2 14 0.07 1 0 0 0 0 1
.........................................................................................................................................................AAATGGTACCGTCCTTGCG........................ 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_56:10214-10409 - dpe_1842 TGTCGACTCAACCCAATTCCGCTGACCATATTCAGCAGAGCGTCGATGCGGTAAGTAGCAAAAGTCCGAAT---TTGA-----------AAGACGTTGCTGCTGCTTTGCACCGTCTTTCACAGAAGGTTGATAAGCTACAACACAA-------CATCCCCAAAAAGCCCAAGGTTTCCCATGGCACGAACGTAGATGATGTGCAGTCGGTGGTCGT
dp5 Unknown_singleton_2913:4074-4252 - TGTCGACTCAACCCAATTCCGCTGAGCATATTCAGCAGAGCGTCGATGCGGTAAGTAGCAAAAGTCCGAAT---TTGA-----------AAGACGTTGCTGCTGCTTTGCACATTCTTACACGGAAGGTTGATAAGCTACAACACAA-------CATCCCCAAAAAGCCCAAGGTGTCCCATGGCACGAACGTAGATGAT-----------------
droVir3 scaffold_12728:745732-745864 + TGTCGACACAAACTGCAACTGCTGAGCAAAAACAGCAGAATATAGAAGAGGTCAGTAACAATAGCCCCAGC---TTAA-----------CTGATGTTGCGGCCGCCTTGCACGCGCTTTCCCAGTAAGTCGATAAGCTGCAGAACGA----------------------------------------------------------------------
droFic1 scf7180000453788:56909-57049 + CTTCGACTGCTGCTGATT----------------------------------CATCCATT--TGCGCAGCTTCTACCGAAGATCCTTGGAAAAAGTCAACAAGCAGCTGCGTTCGCTTTCACAAAAGTTTGATGATTTACAAAAGGATGTCAAACGTCTCCA---ATTCCAAGGTCGCTC-------------------------------------
droEle1 scf7180000489069:45950-46065 + TCTCTGCA------------GATGA-CGTAGCCGGAACCGCTTCGGTGAATGCAGTTGCT--CGTCCGGAATCTATCA-----------AGGACATCGCAGACTCTCTGCGTGCGCTGACAAAAAAGGTTGATACGATGCAA---------------------------------------------------------------------------
droRho1 scf7180000775783:22434-22443 - G-TCGACTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413755:520-624 + GATCAACACAACACCGCTTCGGTGAATG------------------------CAGTTGCT--CGTCCGGAATCTATCA-----------AGGACATCGCAGACTCTCTGCGTGCGCTGACAAAAAATGTTGATACGATGCAA---------------------------------------------------------------------------
droYak3 chr2h:849726-849743 + T--CGGCTCGTCCCCATCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4732:163005-163005 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGTCGACTCAACCCAATTCCGCTGACCATATTCAGCAGAGCGTCGATGCGGTAAGTAGCAAAAGTCCGAAT---TTGA-----------AAGACGTTGCTGCTGCTTTGCACCGTCTTTCACAGAAGGTTGATAAGCTACAACACAA-------CATCCCCAAAAAGCCCAAGGTTTCCCATGGCACGAACGTAGATGATGTGCAGTCGGTGGTCGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................TCCCATGGCACGAACGTAGATGATG................25114.00140140000
......................TGACCATATTCAGCAGAGCGTCGATG.........................................................................................................................................................................26212.00244200000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AA..............................................................................................................................2637.33220210100
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAAG..................................................2827.00140140000
...............................................................................................................................................................................TTCCCATGGCACGAACGTAGATGATG................2616.006060000
......................................................................................................................................................................GCCCAAGGTTTCCCATGGCACGAACG.........................2625.50110110000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAA...................................................2724.509090000
..............................................................................................................................................................................TTTCCCATGGCACGAACGTAGATGATG................2714.004030001
............................TATTCAGCAGAGCGTCGATGCGG......................................................................................................................................................................2343.50142120000
.................TCCGCTGACCATATTCAGCAGAGCGTCGA...........................................................................................................................................................................2923.507070000
......................................................................................................................TCACAGAAGGTTGATAAGCTACAACAC........................................................................2713.003030000
................TTCCGCTGACCATATTCAGCAGAGCGT..............................................................................................................................................................................2723.006060000
................................................................................................................................................................................................TAGATGATGTGCAGTCGGTGG....2113.003030000
................................................................................................................................................................................................TAGATGATGTGCAGTCGGTGGTC..2313.003030000
...................................................................................................TGCTGCTTTGCACCGTCTTTCACAG.............................................................................................2513.003030000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAA......................................................2432.678080000
.......................................................................................................................................................................CCCAAGGTTTCCCATGGCACGAACG.........................2522.505050000
................................................................................................................................................................................................TAGATGATGTGCAGTCGG.......1812.002020000
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTGCTG.................................................................................................................2622.004040000
.................TCCGCTGACCATATTCAGCAGAGCGTCG............................................................................................................................................................................2822.004040000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTTGCACC........................................................................................................2712.002110000
................................................................................................................................................................................................TAGATGATGTGCAGTCGGTGGTCG.2412.002020000
....GACTCAACCCAATTCCGCTGACCATAT..........................................................................................................................................................................................2712.002020000
..............................................TGCGGTAAGTAGCAAAAGTCCGAAT---T..............................................................................................................................................2632.006060000
...................................................................................................TGCTGCTTTGCACCGTCTTTCACA..............................................................................................2412.002020000
......................TGACCATATTCAGCAGAGCGTCGA...........................................................................................................................................................................2422.004040000
................TTCCGCTGACCATATTCAGCAGAGCG...............................................................................................................................................................................2621.503030000
......................TGACCATATTCAGCAGAGCGTCGAT..........................................................................................................................................................................2521.503030000
.........................................................................................................................................................................CAAGGTTTCCCATGGCACGAACGTAGA.....................2721.503030000
......................TGACCATATTCAGCAGAGCGTCGATGC........................................................................................................................................................................2721.503210000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAA.....................................................2531.334040000
..............................................TGCGGTAAGTAGCAAAAGTCCGAAT---...............................................................................................................................................2531.334040000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTTGCAC.........................................................................................................2641.255230000
.............................................................................................................................................................CCCCAAAAAGCCCAAGGTTTCCCATG..................................2611.001010000
.................................................................................................................................................................................CCCATGGCACGAACGTAGATGATGT...............2511.001010000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTT..............................................................................................................2141.004220000
...................................................................................................................................................................................................ATGATGTGCAGTCGGTGGTCG.2111.001010000
......................................................................................................................................................................................GGCACGAACGTAGATGATGTGC.............2211.001001000
......................................................................................................TGCTTTGCACCGTCTTTCACAGAAGGT........................................................................................2711.001010000
........................................................................................................................................................................................CACGAACGTAGATGATGTGCAGTCG........2511.001010000
....................................................................................................................................................................................................TGATGTGCAGTCGGTGGTCGT2111.001010000
................................................................................................TGCTGCTGCTTTGCACCGTCTTTCACA..............................................................................................2711.001010000
.............................................................................................................................................................................................ACGTAGATGATGTGCAGTC.........1911.001010000
..............................................................................................................................................................................TTTCCCATGGCACGAACGTAGATGATGT...............2811.001010000
...............................................................................................................................................................................................GTAGATGATGTGCAGTCGGTG.....2111.001010000
................................................................................................................................................................................................TAGATGATGTGCAGTCGGTG.....2011.001010000
............................TATTCAGCAGAGCGTCGATGC........................................................................................................................................................................2141.004400000
.............................................................................................................CACCGTCTTTCACAGAAGGTTG......................................................................................2211.001010000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCA.......................................................2331.003030000
...................CGCTGACCATATTCAGCAGAGCGTCGA...........................................................................................................................................................................2721.002020000
............................................................................................................................................................TCCCCAAAAAGCCCAAGGTTTCCCAT...................................2611.001010000
...............................................................................................................................................................................................GTAGATGATGTGCAGTCGGTGGTC..2411.001010000
.................TCCGCTGACCATATTCAGCAGAGCGTC.............................................................................................................................................................................2721.002020000
................................................................................................TGCTGCTGCTTTGCACCGTCTT...................................................................................................2211.001010000
.............CAATTCCGCTGACCATATTCAGCAG...................................................................................................................................................................................2511.001010000
......................................................................................................TGCTTTGCACCGTCTTTCACAGAAGG.........................................................................................2611.001010000
...................................................................................................TGCTGCTTTGCACCGTCTTTCACAA.............................................................................................2511.001010000
.............................................................................................................................................................................................ACGTAGATGATGTGCAGTCGGTGG....2411.001010000
..................................................................................................................................................................................CCATGGCACGAACGTAGATGATGTG..............2511.001010000
.....................................................................................................CTGCTTTGCACCGTCTTTCACAGAA...........................................................................................2511.001010000
.................................................................................................................................................................................................AGATGATGTGCAGTCGGTGGTT..2211.001010000
...................................................................................................TGCTGCTTTGCACCGTCTTTCAC...............................................................................................2311.001010000
................................................................................................................................................................................TCCCATGGCACGAACGTAGATGATGT...............2611.001010000
......................................................................................................TGCTTTGCACCGTCTTTCACAGA............................................................................................2311.001010000
...................................................................................................TGCTGCTTTGCACCGTCTA...................................................................................................1911.001010000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTTGCACCG.......................................................................................................2811.001010000
......................................................................T---TTGA-----------AAGACGTTGCTGCTG.................................................................................................................2040.753030000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCCCAA......................................................2730.672020000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------................................................................................................................................2430.672010001
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AAG.............................................................................................................................2730.672020000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------A...............................................................................................................................2530.672020000
......................TGACCATATTCAGCAGAGCGT..............................................................................................................................................................................2120.501100000
..............................................................................................................................................................................TTTCCCATGGCACGAACGTAGATGA..................2520.501010000
......................................................................................................................................AGCTACAACACAA-------CATCCCCAAAAAGCC................................................2820.501010000
......................TGACCATATTCAGCAGAGCGTCGATGCGG......................................................................................................................................................................2920.501100000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAA....................................................2620.501010000
.......................GACCATATTCAGCAGAGCGTCGATG.........................................................................................................................................................................2520.501010000
...........................................................................................................................................................................AGGTTTCCCATGGCACGAACGTAGA.....................2520.501010000
.....................................................................................................................................................................AGCCCAAGGTTTCCCATGGCACGAACG.........................2720.501010000
................TTCCGCTGACCATATTCAGCAGAGC................................................................................................................................................................................2520.501010000
......................TGACCATATTCAGCAGAGC................................................................................................................................................................................1920.501010000
............................................................................GA-----------AAGACGTTGCTGCTGCTA..............................................................................................................2040.502110000
....................GCTGACCATATTCAGCAGAGCGTC.............................................................................................................................................................................2420.501010000
..............................................................................................................................................................................TTTCCCATGGCACGAACGTAGATGAA.................2620.501010000
.....................................................................................................................................AAGCTACAACACAA-------CATCCCCAAAAA...................................................2620.501010000
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTGCTGC................................................................................................................2720.501010000
...................CGCTGACCATATTCAGCAGAGCGTCGAAA.........................................................................................................................................................................2920.501100000
....................GCTGACCATATTCAGCAGAGCGTCGATG.........................................................................................................................................................................2820.501010000
...............................................................GTCCGAAT---TTGA-----------AAGACGTTGCTG....................................................................................................................2420.501010000
.....................................................................................................................................AAGCTACAACACAA-------CATCCCCAAAAAG..................................................2720.501010000
................................................................................................................................................................................TCCCATGGCACGAACGTAGATGAT.................2420.501010000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCC.........................................................2440.502020000
.............................................................AAGTCCGAAT---TTGA-----------AAGACGTTGCTG....................................................................................................................2620.501010000
.....................................................................................................................................................................AGCCCAAGGTTTCCCATGGCACGAA...........................2520.501010000
...............................TCAGCAGAGCGTCGATGCGGTAAGTA................................................................................................................................................................2640.502020000
.........................................................................................................................................................................CAAGGTTTCCCATGGCACGAACGTA.......................2520.501010000
.................TCCGCTGACCATATTCAGCAGAGCGT..............................................................................................................................................................................2620.501010000
..........................................................................................................................................................................AAGGTTTCCCATGGCACGAACGTAGAA....................2720.501010000
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTGCT..................................................................................................................2520.501010000
..................CCGCTGACCATATTCAGCAGAGCG...............................................................................................................................................................................2420.501010000
......................TGACCATATTCAGCAGAGCG...............................................................................................................................................................................2020.501010000
..........................................................................TTGA-----------AAGACGTTGCTGCTGCTTTGCAC.........................................................................................................2740.502110000
......................TGACCATATTCAGCAGAGCGTCGATGCG.......................................................................................................................................................................2820.501010000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAAA..................................................2820.501010000
.......................GACCATATTCAGCAGAGCGTCGATGC........................................................................................................................................................................2620.501010000
.......................................................................................................................................................................CCCAAGGTTTCCCATGGCACGAACGTA.......................2720.501010000
............................................................AAAGTCCGAAT---TTGA-----------AAGACGTTG.......................................................................................................................2420.501010000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCCC........................................................2530.331010000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCCCA.......................................................2630.331010000
....................................................AAGTAGCAAAAGTCCGAAT---TTGA-----------AAGA............................................................................................................................2730.331010000
.................................................................CCGAAT---TTGA-----------AAGACGTTGCTGCTG.................................................................................................................2530.331000001
.......................................................TAGCAAAAGTCCGAAT---TTGA-----------AAGACG..........................................................................................................................2630.331010000
.......................................................TAGCAAAAGTCCGAAT---TTGA-----------AAGACGT.........................................................................................................................2730.331010000
..................................................................CGAAT---TTGA-----------AAGACGTTGCTGCT..................................................................................................................2330.331010000
.....................................................................................................................................AAGCTACAACACAA-------CATCCCCAA......................................................2330.331010000
........................................................AGCAAAAGTCCGAAT---TTGA-----------AAGACGT.........................................................................................................................2630.331010000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AAA.............................................................................................................................2730.331010000
...................................................TAAGTAGCAAAAGTCCGAAT---T..............................................................................................................................................2130.331010000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AAGA............................................................................................................................2830.331010000
...................................................TAAGTAGCAAAAGTCCGAAT---TTG............................................................................................................................................2330.331010000
................................................................................................................................TTGATAAGCTACAACACAA-------CATCCCCA.......................................................2730.331010000
............................................................................................................................AAGGTTGATAAGCTACAACACAA-------CATC...........................................................2740.251010000
............................................................................GA-----------AAGACGTTGCTGCTGCTTTG............................................................................................................2240.251010000
..........................................................................TTGA-----------AAGACGTTGCTGCTGCC...............................................................................................................2140.251100000
............................TATTCAGCAGAGCGTCGATGCGGTA....................................................................................................................................................................2540.251010000
.............................................................................A-----------AAGACGTTGCTGCTGCTTTG............................................................................................................2140.251010000
.............................ATTCAGCAGAGCGTCGATGCGGTAAG..................................................................................................................................................................2640.251010000
......................................................................T---TTGA-----------AAGACGTTGCTGCTGCTT..............................................................................................................2340.251010000
..........................................TCGATGCGGTAAGTAGCAAAAGTCCG.....................................................................................................................................................2640.251010000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTT.............................................................................................................2240.251010000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTTG............................................................................................................2340.251010000
.............................................................................A-----------AAGACGTTGCTGCTGCTTTGC...........................................................................................................2240.251010000
......................................................................T---TTGA-----------AAGACGTTGCTGCTGCTTT.............................................................................................................2440.251010000
................................CAGCAGAGCGTCGATGCGGT.....................................................................................................................................................................2040.251001000
......................................................................T---TTGA-----------AAGACGTTGCTGCTGCTTTGCAC.........................................................................................................2840.251010000
............................TATTCAGCAGAGCGTCGATGCGGTAAAA.................................................................................................................................................................2840.251010000
..........................................................................TTGA-----------AAGACGTTGCTGCTGCTTT.............................................................................................................2340.251010000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCC..........................................................2340.251010000
...........................................................................TGA-----------AAGACGTTGCTGCTGC................................................................................................................1940.251010000
...............................TCAGCAGAGCGTCGATGCGGTAAG..................................................................................................................................................................2440.251010000
............................TATTCAGCAGAGCGTCGATGCGGT.....................................................................................................................................................................2440.251001000
...........................................CGATGCGGTAAGTAGCAAAAA.........................................................................................................................................................2150.201010000
..............................................TGCGGTAAGTAGCAAAAGTCCGAAT---A..............................................................................................................................................2660.171010000
..............................................TGCGGTAAGTAGCAAAAGTCCGAAA---...............................................................................................................................................2560.171010000
............................................................................................................................AAGGTTGATAAGCTACAACA.........................................................................2060.171010000
dp5
TGTCGACTCAACCCAATTCCGCTGAGCATATTCAGCAGAGCGTCGATGCGGTAAGTAGCAAAAGTCCGAAT---TTGA-----------AAGACGTTGCTGCTGCTTTGCACATTCTTACACGGAAGGTTGATAAGCTACAACACAA-------CATCCCCAAAAAGCCCAAGGTGTCCCATGGCACGAACGTAGATGAT-----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAA...................................................27328.0084066700001100
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAA....................................................26311.003302720000310
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AA..............................................................................................................................26310.003002800001100
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAAG..................................................2839.002702230000200
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTGC...................................................................................................................2438.0024011000001300
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAAGC.................................................2936.331901621000000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAA.....................................................2534.33130910000300
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCA.......................................................2334.001201200000000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCCCA.......................................................2633.67110800000300
..............................................TGCGGTAAGTAGCAAAAGTCCGAAT---T..............................................................................................................................................2623.5070400000300
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCCCAA......................................................2733.33100800000200
.......................................................TAGCAAAAGTCCGAAT---TTGA-----------AAGACGT.........................................................................................................................2732.6780000000800
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAA......................................................2432.6780800000000
.......................................................TAGCAAAAGTCCGAAT---TTGA-----------AAGACG..........................................................................................................................2632.6780500000300
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------A...............................................................................................................................2532.3370700000000
.....................................................................................................................................AAGCTACAACACAA-------CATCCCCAAAAA...................................................2632.3370700000000
..............................................TGCGGTAAGTAGCAAAAGTCCGAAT---...............................................................................................................................................2522.0040000000400
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTGCT..................................................................................................................2532.0060300000300
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AAA.............................................................................................................................2731.6750100001300
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAAAA.................................................2931.6750000000500
..........................................................................TTGA-----------AAGACGTTGCTGCTGCTTTG............................................................................................................2451.4070700000000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTT..............................................................................................................2151.4070500001100
.....................................................................................................................................AAGCTACAACACAA-------CATCCCCAAAA....................................................2531.3340400000000
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTG....................................................................................................................2331.3340400000000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCC.........................................................2441.2550400100000
..........................................................................TTGA-----------AAGACGTTGCTGCTGCTTT.............................................................................................................2351.2060600000000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------................................................................................................................................2431.0030300000000
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTGCTG.................................................................................................................2631.0030300000000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCC........................................................2231.0030120000000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCCC........................................................2531.0030120000000
.....................................................................................................................................AAGCTACAACACAA-------CATCCCCAAAAAG..................................................2731.0030300000000
...........................................................................TGA-----------AAGACGTTGCTGCTGC................................................................................................................1950.8040400000000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTTGCAC.........................................................................................................2650.8040310000000
.................................................................CCGAAT---TTGA-----------AAGACGTTGCTGC...................................................................................................................2340.7530300000000
....................................................................................................................................TAAGCTACAACACAA-------CATCCC.........................................................2140.7530300000000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AAG.............................................................................................................................2730.6720200000000
...................................................TAAGTAGCAAAAGTCCGAAT---T..............................................................................................................................................2130.6720200000000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AAGA............................................................................................................................2830.6720200000000
...................................................TAAGTAGCAAAAGTCCGAAT---TTG............................................................................................................................................2330.6720200000000
...........................................................AAAAGTCCGAAT---TTGA-----------AAGACGT.........................................................................................................................2330.6720200000000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAAA..................................................2830.6720110000000
.........................................................................................................................................TACAACACAA-------CATCCCCAAAAAGCC................................................2530.6720110000000
..................................................................................................................................GATAAGCTACAACACAA-------CATCCCCA.......................................................2530.6720200000000
...........................................................AAAAGTCCGAAT---TTGA-----------AAGACGTTGC......................................................................................................................2630.6720200000000
..........................................................................TTGA-----------AAGACGTTGCTGCTGC................................................................................................................2050.6030200100000
..........................................................................TTGA-----------AAGACGTTGCTGCTGCTT..............................................................................................................2250.6030300000000
......................................................................T---TTGA-----------AAGACGTTGCTGCTG.................................................................................................................2050.6030300000000
...........................................................................TGA-----------AAGACGTTGCTGCTGCT...............................................................................................................2050.6030200001000
................................................CGGTAAGTAGCAAAAGTCCGAAT---T..............................................................................................................................................2420.5010100000000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCC..........................................................2340.5020110000000
..............................................TGCGGTAAGTAGCAAAAGTCCGA....................................................................................................................................................2320.5010100000000
.................................................................CCGAAT---TTGA-----------AAGACGTTGCTGCTG.................................................................................................................2540.5020200000000
................................................CGGTAAGTAGCAAAAGTCCGAAT---...............................................................................................................................................2320.5010100000000
..............................................TGCGGTAAGTAGCAAAAGTCCGAAT---TA.............................................................................................................................................2720.5010100000000
................................................CGGTAAGTAGCAAAAGTCCGAAT---TA.............................................................................................................................................2520.5010100000000
TGTCGACTCAACCCAATTCCGCTGA................................................................................................................................................................................................2550.4020100000100
..........................................................................TTGA-----------AAGACGTTGCTGCTGCTTTGCAC.........................................................................................................2750.4020200000000
......................................................................T---TTGA-----------AAGACGTTGCTGCTGCTT..............................................................................................................2350.4020200000000
TGTCGACTCAACCCAATTCCGCT..................................................................................................................................................................................................2350.4020200000000
......................................................................................................................................AGCTACAACACAA-------CATCCCCAAAAAGCC................................................2830.3310100000000
...............................................................GTCCGAAT---TTGA-----------AAGACGTTGCTGC...................................................................................................................2530.3310100000000
................................................................TCCGAAT---TTGA-----------AAGACGTTGCT.....................................................................................................................2230.3310010000000
...................................................TAAGTAGCAAAAGTCCGAAT---TT.............................................................................................................................................2230.3310100000000
................................................................................................................................TTGATAAGCTACAACACAA-------CATCCCCAA......................................................2830.3310100000000
....................................................AAGTAGCAAAAGTCCGAAT---TTGA-----------A...............................................................................................................................2430.3310100000000
....................................................AAGTAGCAAAAGTCCGAAT---TTGA-----------................................................................................................................................2330.3310100000000
...........................................................................................................................................CAACACAA-------CATCCCCAAAAAG..................................................2130.3310100000000
...................................................TAAGTAGCAAAAGTCCGAA...................................................................................................................................................1930.3310100000000
.................................................................................................................................TGATAAGCTACAACACAA-------CATCCCCAAA.....................................................2830.3310100000000
..............................................................AGTCCGAAT---TTGA-----------AAGACGTTGC......................................................................................................................2330.3310100000000
.........................................................................................................................................TACAACACAA-------CATCCCCAAAAAGCCC...............................................2630.3310100000000
...................................................TAAGTAGCAAAAGTCCGAAT---TTGA-----------AAGAC...........................................................................................................................2930.3310010000000
.....................................................AGTAGCAAAAGTCCGAAT---TTGA-----------AA..............................................................................................................................2430.3310100000000
.......................................................TAGCAAAAGTCCGAAT---TTGA-----------AAGA............................................................................................................................2430.3310100000000
........................................................................................................................................CTACAACACAA-------CATCCCCAAAA....................................................2230.3310100000000
....................................................................................................................................TAAGCTACAACACAA-------CATCCCCAAAAAGA.................................................2930.3310100000000
.......................................................................................................................................GCTACAACACAA-------CATCCCCAAAAAGC.................................................2630.3310100000000
....................................................AAGTAGCAAAAGTCCGAAT---TTGA-----------AAGA............................................................................................................................2730.3310100000000
..........................................................................................................................................ACAACACAA-------CATCCCCAAAAAGCC................................................2430.3310100000000
........................................................................................................................................CTACAACACAA-------CATCCCCAAAAAGCC................................................2630.3310010000000
...........................................................................................................................................CAACACAA-------CATCCCCAAAAAGCC................................................2330.3310100000000
......................................................................................................................................AGCTACAACACAA-------CATCCCCAAAAA...................................................2530.3310100000000
..............................................................................................................................................CACAA-------CATCCCCAAAAAGCCCAAGG...........................................2530.3310100000000
............................................................AAAGTCCGAAT---TTGA-----------AAGACGTTGCTG....................................................................................................................2730.3310100000000
....................................................AAGTAGCAAAAGTCCGAAT---TTGA-----------AA..............................................................................................................................2530.3310100000000
.......................................................TAGCAAAAGTCCGAAT---TTGA-----------AAGAC...........................................................................................................................2530.3310100000000
................................................................TCCGAAT---TTGA-----------AAGACGTTGCTGCTA.................................................................................................................2630.3310100000000
.........................................................................................................................................TACAACACAA-------CATCCCCAAAAAGCCCAAG............................................2930.3310100000000
....................................................................................................................................TAAGCTACAACACAA-------CATCC..........................................................2040.2510010000000
.................................................................CCGAAT---TTGA-----------AAGACGTTGCTGCTGCT...............................................................................................................2740.2511000000000
.............................................................................A-----------AAGACGTTGCTGCTGCT...............................................................................................................1850.2010100000000
....................................................................AAT---TTGA-----------AAGACGTTGCTGCT..................................................................................................................2150.2010100000000
...........................................................................TGA-----------AAGACGTTGCTGCTGCAA..............................................................................................................2150.2010100000000
...........................................................................TGA-----------AAGACGTTGCTGCTGT................................................................................................................1950.2010100000000
............................................................................................................................AAGGTTGATAAGCTACAACACAA-------CA.............................................................2550.2010100000000
..........................................................................TTGA-----------AAGACGTTGCTGCTGCT...............................................................................................................2150.2010100000000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTTGCA..........................................................................................................2550.2010100000000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTT.............................................................................................................2250.2010100000000
............................................................................GA-----------AAGACGTTGCTGCTGCTTTGCAC.........................................................................................................2550.2010100000000
...................................................................GAAT---TTGA-----------AAGACGTTGCTGC...................................................................................................................2150.2010010000000
..........................................................................TTGA-----------AAGACGTTGCTGCTGT................................................................................................................2050.2010000001000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTC..............................................................................................................2150.2010010000000
..........................................................................TTGA-----------AAGACGTTGCTGCTG.................................................................................................................1950.2010000000100
......................................................................T---TTGA-----------AAGACGTTGCTGCTGC................................................................................................................2150.2010100000000
...........................................................................TGA-----------AAGACGTTGCTGCTGCTTC.............................................................................................................2250.2010010000000
...................................................................GAAT---TTGA-----------AAGACGTTGCTGCTG.................................................................................................................2350.2010100000000
...........................................................................TGA-----------AAGACGTTGCTGCTGA................................................................................................................1960.1710100000000
droVir3
TGTCGACACAAACTGCAACTGCTGAGCAAAAACAGCAGAATATAGAAGAGGTCAGTAACAATAGCCCCAGC---TTAA-----------CTGATGTTGCGGCCGCCTTGCACGCGCTTTCCCAGTAAGTCGATAAGCTGCAGAACGA----------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................TAAGTCGATAAGCTGCAGAAAC.......................................................................2211.001000010000000000000000000000000000000000000000000000000000000000
.......ACAAACTGCAACTGCTGAGCA.............................................................................................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
....................................AGAATATAGAAGAGGTGGT..................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000010
droFic1
CTTCGACTGCTGCTGATT----------------------------------CATCCATT--TGCGCAGCTTCTACCGAAGATCCTTGGAAAAAGTCAACAAGCAGCTGCGTTCGCTTTCACAAAAGTTTGATGATTTACAAAAGGATGTCAAACGTCTCCA---ATTCCAAGGTCGCTC-------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCTCTGCA------------GATGA-CGTAGCCGGAACCGCTTCGGTGAATGCAGTTGCT--CGTCCGGAATCTATCA-----------AGGACATCGCAGACTCTCTGCGTGCGCTGACAAAAAAGGTTGATACGATGCAA---------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-TCGACTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GATCAACACAACACCGCTTCGGTGAATG------------------------CAGTTGCT--CGTCCGGAATCTATCA-----------AGGACATCGCAGACTCTCTGCGTGCGCTGACAAAAAATGTTGATACGATGCAA---------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
T--CGGCTCGTCCCCATCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 06/08/2015 at 04:47 PM