ID:

dpe_1837

Coordinate:

scaffold_54:211670-211820 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.8 -17.6

Flybase annnotation

CDS [Dper\GL20668-cds]; exon [dper_GLEANR_2389:2]; intron [Dper\GL20668-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+
Gypsy8-I_Dpse-intLTRGypsy-
mature
  1. scaffold_64:211444-211466 -
  2. dpe_1837  scaffold_54:211765-211787 -
  3. scaffold_28:69335-69357 +
  4. scaffold_186:18567-18589 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCAGGGGCAGTGGCAGCAGCAACAGCAGTGGAGAGGACCCGAGGCGGCAGTGATGTCAATACGTTTCGCAAGAAGTGGGCCACGCGCACGGAGGTGTTCCGGGAGCACAACCAGTGAAAAAAAAAGAAAACAAAAAAAAAAAGGCAATTAAAAAAAAAGAAAGAAAGAAAAGGAAAAAAATTAGAAGAAAAGAAAGTGAATAAACGACCAGAGAATGGCGAAAAGAAAAAGAAACTGAATACTTACTTGA
**************************************************.((...((......((((((.....(((..((.((.((((....))))..))))..))).....))))))......))...))....................................................................**************************************************
Read size # Mismatch Hit Count Total Norm Total M042
female body
V042
embryo
V111
male body
...................................................................................CGCGCACGGAGGTGTTCCGGGAG................................................................................................................................................. 23 0 4 1.00 4 4 0 0
...................................................................................CGCGCACGGAGGTGTTCCGGGAGC................................................................................................................................................ 24 0 3 0.33 1 1 0 0
...................................................................................CGCGCACGGAGGTGTTCCGGG................................................................................................................................................... 21 0 7 0.29 2 1 1 0
...................................................................................CGCGCACGGAGGTGTTCCGGGA.................................................................................................................................................. 22 0 7 0.29 2 1 0 1
....................................................................................GCGCACGGAGGTGTTCCGGGA.................................................................................................................................................. 21 0 7 0.14 1 1 0 0
..................................................................................ACGCGCACGGAGGTGTTCAGGG................................................................................................................................................... 22 1 9 0.11 1 1 0 0
..............................................................................................................................................................AGAGAGAAAAAAAAGGAAGAAAAT..................................................................... 24 3 14 0.07 1 1 0 0
....GGGGCAGTGGCAGCAGCA..................................................................................................................................................................................................................................... 18 0 15 0.07 1 1 0 0

Anti-sense strand reads

TCGTCCCCGTCACCGTCGTCGTTGTCGTCACCTCTCCTGGGCTCCGCCGTCACTACAGTTATGCAAAGCGTTCTTCACCCGGTGCGCGTGCCTCCACAAGGCCCTCGTGTTGGTCACTTTTTTTTTCTTTTGTTTTTTTTTTTCCGTTAATTTTTTTTTCTTTCTTTCTTTTCCTTTTTTTAATCTTCTTTTCTTTCACTTATTTGCTGGTCTCTTACCGCTTTTCTTTTTCTTTGACTTATGAATGAACT
**************************************************.((...((......((((((.....(((..((.((.((((....))))..))))..))).....))))))......))...))....................................................................**************************************************
Read size # Mismatch Hit Count Total Norm Total M042
female body
M021
embryo
V057
head
V042
embryo
...............................................................................CGGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 22 0 10 5.60 56 54 0 0 2
..............................................................................CCGGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 23 0 9 4.89 44 43 1 0 0
................................................................................GGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 21 0 10 4.50 45 44 1 0 0
.............................................................................CCCGGTGCGCGTGCCTCCACAAGT...................................................................................................................................................... 24 1 2 3.50 7 1 6 0 0
..............................................................................CCGGTGCGCGTGACTCCACAAGG...................................................................................................................................................... 23 1 9 3.00 27 27 0 0 0
...............................................................................CGGTGCGCGTGACTCCACAAGG...................................................................................................................................................... 22 1 10 2.60 26 26 0 0 0
................................................................................GGTGCGCGTGACTCCACAAGG...................................................................................................................................................... 21 1 11 1.64 18 18 0 0 0
..............................................................................CCGGTGCGCGTGCCTCCACAAG....................................................................................................................................................... 22 0 10 1.40 14 14 0 0 0
...............................................................................CGGTGCGCGTGCCTCCACAAG....................................................................................................................................................... 21 0 11 0.82 9 9 0 0 0
.................................................................................GTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 20 0 12 0.67 8 8 0 0 0
.............................................................................CCCGGTGCGCGTGCCTCCACAAAT...................................................................................................................................................... 24 2 2 0.50 1 1 0 0 0
................................................................................GGTGCGCGTGCCTCCACAAG....................................................................................................................................................... 20 0 11 0.45 5 5 0 0 0
...............................................................................CGGTGCGCGTGACTCCACAAG....................................................................................................................................................... 21 1 11 0.36 4 4 0 0 0
................................................................................GGTGCGCGTGCCTCCACAAGGCCCTC................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0
.................................................................................GTGCGCGTGCCTCCACAAG....................................................................................................................................................... 19 0 13 0.31 4 4 0 0 0
......................TGTTGTCAGCTGTCCTGGGCT................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 1 0
..................................................................................TGCGCGTGCCTCCACAAGG...................................................................................................................................................... 19 0 12 0.25 3 3 0 0 0
.................................................................................GTGCGCGTGACTCCACAAGG...................................................................................................................................................... 20 1 13 0.23 3 3 0 0 0
.............................................................................TCCGGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 24 1 9 0.22 2 2 0 0 0
..............................................................................CCGGTGCGCGTGACTCCACAAG....................................................................................................................................................... 22 1 10 0.20 2 2 0 0 0
...............................................................................CGGTGCGCGTGCCACCACAAGG...................................................................................................................................................... 22 1 11 0.18 2 2 0 0 0
...............................................................................CGGTGCGCGTGCGTCCACAAG....................................................................................................................................................... 21 1 12 0.17 2 2 0 0 0
................................................................................GGTGCGCGTGCCTCCACAAGGCCC................................................................................................................................................... 24 0 6 0.17 1 1 0 0 0
...............................................................................CGGTGCGCGTGCCTCCACAAGGCC.................................................................................................................................................... 24 0 6 0.17 1 1 0 0 0
...............................................................................TGGTGCGCGTGACTCCACAAGG...................................................................................................................................................... 22 2 12 0.17 2 2 0 0 0
..........................................................................TCAGCCGGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 27 1 7 0.14 1 1 0 0 0
..................................................................................TGCGCGTGCCTCCACAAGGCCCT.................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0
................................................................................GGTGCGCGTGACTCCACAAGGCCCT.................................................................................................................................................. 25 1 7 0.14 1 1 0 0 0
...............................................................................CGGTGCGCGTGCCTCCACAAATCC.................................................................................................................................................... 24 2 8 0.13 1 1 0 0 0
................................................................................GGTGCGCGTGCCTCCACAAGTCCCT.................................................................................................................................................. 25 1 8 0.13 1 1 0 0 0
................................................................................GGTGCGCGTGCCTCCACAAGTCCC................................................................................................................................................... 24 1 8 0.13 1 0 1 0 0
..............................................................................CGGGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 23 1 9 0.11 1 1 0 0 0
..............................................................................CCGGTGCGCGTGCCTCCACAACG...................................................................................................................................................... 23 1 9 0.11 1 1 0 0 0
............................................................................CACCGGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 25 2 9 0.11 1 1 0 0 0
..............................................................................CCGGTGCGCTTGACTCCACAAGG...................................................................................................................................................... 23 2 9 0.11 1 1 0 0 0
................................................................................GGTGCGCGTGCCTCCACAAGGC..................................................................................................................................................... 22 0 9 0.11 1 1 0 0 0
..............................................................................CCGGTGCGCGTGCCTCCACAAA....................................................................................................................................................... 22 1 10 0.10 1 1 0 0 0
.........................................................................ATCAGCCGGTGCGCGTGCCT.............................................................................................................................................................. 20 2 10 0.10 1 1 0 0 0
..............................................................................CCGGTGCGCGTGACTCCACAAGC...................................................................................................................................................... 23 2 10 0.10 1 1 0 0 0
...........................................................................CATCCGGTGCGCGTGCCT.............................................................................................................................................................. 18 1 10 0.10 1 1 0 0 0
..............................................................................CCTGTGCGCGTGACTCCACAAGG...................................................................................................................................................... 23 2 10 0.10 1 1 0 0 0
...............................................................................CGGTTCGCGTGCCTCCACAAGG...................................................................................................................................................... 22 1 10 0.10 1 1 0 0 0
...............................................................................CGGTGCGCGTGCCTCCCCAAGG...................................................................................................................................................... 22 1 10 0.10 1 1 0 0 0
..........................................................................TCAGCCGGTGCGCGTGCCT.............................................................................................................................................................. 19 1 10 0.10 1 1 0 0 0
...............................................................................CGGTGCGCGTGCCTCCACA......................................................................................................................................................... 19 0 11 0.09 1 1 0 0 0
...............................................................................CGGTGCGCGTGCCTCCACAA........................................................................................................................................................ 20 0 11 0.09 1 1 0 0 0
................................................................................GGTGCGCGTGCCTCCACAA........................................................................................................................................................ 19 0 11 0.09 1 1 0 0 0
...............................................................................CGGTGCGCGTGACACCACAAGG...................................................................................................................................................... 22 2 11 0.09 1 1 0 0 0
..............................................................................GCGGTGCGCGTGACTCCACAAGG...................................................................................................................................................... 23 2 11 0.09 1 1 0 0 0
...............................................................................TGGTGCGCGTGCCTCCACAAGG...................................................................................................................................................... 22 1 11 0.09 1 1 0 0 0
..............................................................................CCGGTGCGCGTGCCTCCACAAGA...................................................................................................................................................... 23 1 11 0.09 1 1 0 0 0
.......................................................................TCTACAGCCGGTGCGCGTGCCT.............................................................................................................................................................. 22 2 12 0.08 1 1 0 0 0
.................................................................................GTGCGCGTGACTCCACAAGGC..................................................................................................................................................... 21 1 12 0.08 1 1 0 0 0
................................................................................GGTGCGCGTGACTCCAAAAGG...................................................................................................................................................... 21 2 12 0.08 1 0 0 0 1
..................................................................................TGCGCGTGACTCCACAAGG...................................................................................................................................................... 19 1 13 0.08 1 1 0 0 0
.................................................................................GTGCGCGTGCCTCCACAAA....................................................................................................................................................... 19 1 13 0.08 1 1 0 0 0
.....................................................................................................................................................................................................................................TTCTTCGACTTACGAATGC... 19 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_54:211620-211870 - dpe_1837 AGCAGGGGCAGTGGCAGCAGCAACA--GCAGTGGAGAG--------------------------------------------GACCCGAGGCGGCAGTGATGTCAATACGTTTCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTGGG--CCACGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGCACA-------ACC-----------------------------A---------------------------------------------------------------------------------------GTGAAAAAAA---------AAGAAAACAAAAAAAAAAA---------GGCAATTAAAAAAAA----AGAA---------------------------------A-------------------------------------------------------------------GAAA-------GAAAAGGAAAAAAATTA------------GAAGAAAAGAAAGTGAATAAACGACCA-----------------------------------------------------------------------------GAGAATG---GCG-----------AAAAGAAAAA------------------------------GAA------------------------ACTGA-----ATAC----TTACTTGA
dp5 Unknown_group_34:35570-35819 + AGCAGGGGCAGTGGCAGCAGCAACA--GCAGTGGAGAG--------------------------------------------GACCCGAGGCGGCAGTGATGTCAATACGTTTCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTGGG--CCACGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGCACA-------ACC-----------------------------A---------------------------------------------------------------------------------------GTGAAAAAAA---------AAGAAAACAAAAAAAA-AA---------GGCAATTAAATAAAA----AGAA---------------------------------G-------------------------------------------------------------------GAAA-------GAAAAGGAAAAAAATTA------------GAAGAAAAGAAAGTGAATAAACGACCA-----------------------------------------------------------------------------GAGAATG---GCG-----------AAAAGAAAAA------------------------------GAA------------------------ACTGA-----ATAC----TTACTTGG
droWil2 scf2_1100000004511:4645716-4645935 - AGCAGCGGCGGCGGCGGCAGCGGCA--GCAGCAGCTGT--GGCAGCTG-------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGTGGC--ACATCCGGATCCGGTGGCGATGCCAGCGGCAT-----------------------------------------------------------------------------------CAAGGTAGAAC--C--CATAA-----------------CCAC----------------------------------------CA---C---CAGCGGCGAGT--------AAA---------ATCA----------------------------------------------AAAAAA-----A--------------------A--AA-AAA----ATACA-------AACTAATGGAAAACAGAAAGAA-ACAAA--------ACAAAACAAAAAACAC----------------------------------------------TGGAAAATTGCCCA-----------------------------------------------------------------------------CAGAAAT---GT--------------------------------------------------------------------------------------------------GAAGAAA
droVir3 scaffold_12928:1605106-1605341 + GGCAGCAGCAACAGCAGCTGCAGCA--GCAGCAGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGGCGATAAAACAAAAACAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AGCGACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------CAGCAGCAACAACAACA---T-----------GAACGA--------------------------------------------------------------------------GCAACAAAAGGAAGA----GGCG----------------------------GAGGCAAGCAAA---------ATGGGAAAAAGCAGCATGGA--------AAA-----AGTCTATGA------------------------------AACAATTAAA---CT-C-GGCCA------------------------------------------------------CACAGAA---GCG-----------AGCAGGCAAA------------------------------CAG------------------------CCTAG-----G--C----ACAGTTAA
droMoj3 scaffold_6680:20758047-20758297 - AGCAGCCGCAGCAGCAGCAGCAGCA--GCAGAATAAGA--GCCGGTTG------------------------------------------------------------------------------------CAGCTCTCACCTGCCACCAGCCA--------------CTCCC---------CCTCCGCGAGTTCCATGTCTATC--------CAAATTTTCATG-----------------------------------------------------CAT--------ATGAA-----------------------------------------------------------------------AAGA-----------------------------------------------------------AG-----------------------------------------------------------------------------------CAAAGTAAAAC--C--AATACCAGA----A----A---TCAA-----CTGCACTTGC-----------------AG-------------------------------------------------------------------------------------AAGA----ACAAAAAAA-----A--------------------A--AA-AAA----AAAAA-------AAACAGTCGGAGA-------------------------------------------------------------------------------AGGAAGAGAACAGACAGAC-------------------------------------------------------------------------AGAGTGAC---AGA-----------GAGTGAGAGAG----------------------------------------------------------------------AGAG----ATAGATGA
droGri2 scaffold_14906:4909956-4910184 + GGCAGCAGTGGCAGCAGCAACAACA--GCGACTCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------CT---------------------------GGAAAAGTAGCAGCTAAACAAAAAGACCAAAGAGTGCCAAAGAAGAAAATGCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTGAAAAACCCATT-AAATG-------------------------------------------------------------T----------------------------------------------------------TAGCCAGCAA--------------------------AAAAAAAAA--------------------G--------GA--------------------------------------------------------------------------GAAAAAAGCTA------------AAAAAAAAAGAAAG-----------------------------------------AAAGAAAAA-------------------------A---------AAA--ATAAGCA---GCGACGTCGAC---AACGACGATG------------------------------AGA------------------------ACTGCAAATAAAGC----AAAAGCAA
droAna3 scaffold_13047:1646428-1646658 - AGCAACGGCAGCGACAGCGGCAGCG--GCAGAGCCG--TC------------------------------------GACG-------------------------------------------------------------------------------------------------------CACTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTGTAC---ATAAAATA---------AAGAAAACGAGAAATACAA---------CAAAATTATAATTAATAAAAGAA-------------------------------------------------------------------------------------------------------------------AAAAAAAGAAATTA------------AAAAAAAAAAAA-CA--------------------AC-------------GTAGTTTTTAA---ATCAATTTAAAAGAAATCTTTAAGCATAAATATACAATATAAA---CGTAAAT-----------AAAAGTAATA------------------------------ATA------------------------ACTAA--TTAACAC----TAATTCGA
droBip1 scf7180000395360:19287-19553 - GGCTGAGGCAGTGGCTGAGGCAGTG--GCAGTGGCAGA--GGCAGCGGCGC--------------ATCTCGCCATCGACA----------T---------------------------------TCG---------------------------------------------------------------------------------------------------------GGGGAATTGTCAGTACACACTCAGAGGCGGCATCGATCACTTGTGCGAACCCACTGATCCGAC-----------------------------------------------------------------------AACAAC------------------------------------------------AACAACAACAA-----------------------------------------------------------------------------------CAACGA------------CACGGGCACGAA----A---CCAA----------------------------------------CAACAACAACAACAAAA---T-----------ATA--------------------------------------------------TA-------AA-----A---------A-------------A-AAAA-----TAGAAGATA-------G-------------ATGT------GTTGAATG----------------------------------------------------AAAAAAAAGT--------------------AAT----AAA-AAAAGAAAGAAAAG-------------------------------------------------------------------------------------------------------------------------------------------AA-----AAAA----GTAATAGA
droKik1 scf7180000302809:455732-456017 - AGCAGGCGCAGGCGATGCAGCCGCA--TCACATCTACT--CGTACGTGCTG--------------------CCGGCGGT--------------------------------------------------------------------------------------------------------------C-AGTCACATAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGATGGCAACACATTTGAGTTTGAACTTGAGGGCTAAGACGCTCCGCATGCAACGGATTCATGCGAGGAGGAAA-------ACCTTTAGTTATAGACATAAAA-----------------------------------------------------------------------------------------------------------------------AAAAACCAATGAAA-AA----------------------------------------------------AGCAAAAAAAAAAC-------------------------------------------------------------------AAAA-------CAAAATGGAAAAAATGA------------A---AAAAGAAAGTTAATT----------------------TAT-ATGT-------------------------------------------------------GAC---AGA-----------AAACAAAAATGAAG------------------------------GAA------------------ACAGATCCCGT------AAC----CCAGTTTA
droFic1 scf7180000453903:228559-228786 - AGCATCAGCAGCAACAACAACAGCA--GCGTGCCA-----CGCTCGTGCAG-------------------------------------------------------------------------CCG---------------------------------------------------------------------------------------------------------GGATTCCTGTTCAGCT----------ACC-----------------------------GCAGCAACCA-TCCGCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAA-----CCGACGCAGCAAATACATCAGGGCCCCAAAGTGACGC------ATAGCAG------TGGT-------------------------------------------------------------A-------AG-----A---------A-------------GA-AGAAGAA----G-------AAGAAGATGAAGA--------------------------AGGAAGAAAAAGAAGGAC-------GA-------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAGGAGAAACCGCAAGC--AAA----CCAAATAC
droEle1 scf7180000488055:28356-28616 - AGCGACGGCGGCAGCAGCAGCTAAACAGCGACAGAGA-----------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGACAGCAGCGGCAGCGCCAGAACGACAGCGGCAGCTAA-----------------------------------------------AGTGGGACCCAAATT------------------------------------------------------------T-TTGCGGGTACCCCCCGACAAAA-------ATC-----------------------------A---------------------------------------------------------------------------------------AAGAAAAAAAAA--TGTGAAAAAAAAGAAGAAGGG-TACTCCCTCCGC--------------------------AAAAAAATATACGAAAAATTAAGATTAAAAAG-T-------------TAC-------G-------------GGTACCCT--GTTAATTA----------------------------------------------------ATAATAAAAA--------------------ACC----CAA-AA-ATGGGAAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------ATTT----AAAAAGAA
droRho1 scf7180000780024:96569-96805 + AACAACTGCAGTGGCAACAGCAACA--GCAACTGCA--GC------------------------------------AACA----------A------------------------------------------------CAATCGTCATCAGTCG-------------TC---------GCCGCCTTCGC-AGTCGCAGAGCAATCATAAAAAACAAATCAGCAAACAGCAA----------------------------------------------------------------------------------------------------------------AAAAAAGAAGACAACAAAAAACTG-----------------------AATAGTACTCATGTA------------------------------------------------------------C-TCTCG---------------------------------------------------------AGTACCAGA------------------------------------------------------------------CAACAACC---T-----------AAAAAA--------------------------------------------------------------------------ACAAAAAAAAAATGG----GGAA----------------------------AAGAC----------------------AAAAAAAA----------------------------------------------------------------------------------ATGGGGAAAAGAC------------------------------------------------------------------------------------------------------------------------------------------------AAAA----AAAAGAAA
droBia1 scf7180000301592:74507-74765 + AGCAGCAGCAGCAGCAACACCAGCA--GCAGTAATAG--C------------------------------------CGT-----------ACGGCAGCAACAGCAACACTA--GCCAAAGAAAAGCTGAGCGTAGTT-TT-----------------------------TTTTGTTTCTGCGGTTCGTTC-C---------------------------------------------------------------------------------------TCT--------GCGAT-----------------------------------------------------------------------AAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGC-------------------AACATCAA-----CTACTTCGGC-----------------AAT---------------------A--------------------------------------------------------------------TAGCAAAA--------G---------A-------------A-A------------------------------------------ACAAA---------TTAAAAAAGAAATACTAAAAAAATGCACTTAAACTT------------A------ATG-----------------AAGAAATAAA-----------------------------------------------------------------------------------------------------GTGTTCAAGTGCTTAAAAAAGTTTGTGTCT---------------------------------------AA----AAGTGAAA
droTak1 scf7180000413903:117353-117582 + ATTATCCGGGG-GGCAATGGGAGCA--GTGCTGCCG--GC------------------------------------GGCA----------A---------------------------------TCC---------------------------------------------------------------------------------------------------------GGGCTACTATTAGGTT----------ACT---AAGATCACTTGTT---------------------------GGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A--AA------------GAGCCTC---CGCTAAGCAAACG----------------------AA---------------------A---TATGT-------A--TGTAAAAGAAAAGGAAAAGAA-TAT---------GGC--------------------------------------------------------------------------------------------------------TTTAAATCTAAAAAACAAAA-------CAAGATT--------------------------------------------------------AAAACATAAAG--------------------------------------------------------------A---------------------GGAGGCAAAATCAGC--------------------AGGAAATCTAAAAAGAAAGAGAGAGAGAGAAGC-------------------TGAGA
droEug1 scf7180000409209:58343-58587 + AACAGCAGCAGCAGCAACAGCAGCA--ACAACAGCA--GC------------------------------------AGCAGGATACGAAAACGAGGATGACAA----------------------------------------------CGACCACAGGCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGAGGACACAGATACAGAAACAGGCACAGTCATCAAAACACAGCAAC-------------------A---ATTG----------------------------------------C---------TGCATAA---T-----------CTA--------------------------------------------------TA-------AT-----A---------A-------------A-AATA-----A---------------------------------ACTAA--------ATTAAACAAAAAACCCTTAAA-------GA-----------------------AAGACTAAGT--------------------AAT----CAC-AAACA------------------------------------------------------ACTAGAA---ACG-----------CAAAAGCATT------------------------------AAA------------------------CTGAA-----ACGG----AAACTCAA
dm3 chrX:12580682-12580854 - AGCAGCAGCAACAACAGCAAATGAA--ACACCATAA--GT------------------------------------TGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A--AG------------ATGCGTG---AGCTAGGCAAACG----------------------AC---------------------A---TGTGT-------------------------------------------------------------A-------AA-----A---------A-------------A-AAAA-----AACA-------AAATAACAGATAAGA-----------------------------------------A--------AAA-----AGGCTTTAACAAA------AAG-----------------AAGAATTAAA---TTAAG--------------------------------------------------------------A---------------------GCAGGCAAA----------------TATAATAGGCAGGC---------------------------------------AA----TTGAGAGA
droSim2 3l:15760071-15760268 - AACAGCAGCAGCAGCAGCCGCAACA--GCATCGACA--GC------------------------------------CGCA----------GCAACAGTTACAACAACACTTTTGCCA-------ACCGAGCCG-GAA----------------CA--------------TTCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------------------------------------------------------C-CCGTA---------------------------------------------------------AGTAC-------------------------------------------------------------T----------------------------------------------------------TACCCTACGC--------------------------TAAAAAAAACGTGAAAAGCGAGGAAAAGAAAA-G-------------CCA-------G-------------AAAATGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGGGAAAGGAAAGGCAAGGCA------------AG---GAAT---------GG-----AAAA----GAAAAAGT
droSec2 scaffold_0:3067796-3068038 - AACAACAGCAGCAGCAGAAT--GCA--ACGCATTTGGA--CGAG------T--------------GCAGCACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCAATTATGTA-----GCCAGCGCAGCAGCAACATCGCAGCAGCAGCAGCAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC----A---GCGA----------------------------------------CTGCAGCAGCAGCAGCGTGA---AAATAGTA---------GTGAAAAAAAGAG---------------------------------------------------------------------------AAA----TAGCA-------AAGCAGCAGACGA--------------------------TAGCAAAAAACGA-------TGGGGGAGGGGCTG------------GGTGGCAAAGGGGCAGGTGGAAAGTAG-----------------------------------------------------------------------------GGAAATG---GTG-----------G-------------------------------------------------------------------------------------CGTAGAA
droYak3 X:17615497-17615779 - ATCAGGAGCAGCAGGAACAGCAAAA--GCAGCTGGAGA--ATCAGGAGGATCAGGAGAAGCAGGAGCAGCTGG----AG---AATCAGGAGCAGCAGGAACAGCAAGAGCA--GCTGGAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-GGAG------------------------------------------------------------------------------------GATCAGGAGCAGCTGGA-GAATC-------------------AG-----------------GAGCAGCAGGAA-----------CAGCAA---GAGCAGCTGGAA---------A---------ATCA----------------------------------------------GGA------------------G-------------G-ATCA-----GGAAAAGCAGGAGCAGCTGGAGAATCAGGAGCA-GC-------------------------------------------------------------------AGGAACAGCAAAAGCAGCTG-----------------------------------------------------------------------------GAGAATC---AGG-----------AGGATCAGGA------------------------------GAA------------------------CCAGG-----AGAATCAGGAGCAGGA
droEre2 scaffold_4690:13318756-13319028 - AGCAGTAGCAGTAGCAGCAACAATC--GCAACGCAACG--CACAAAAGCAT--------------GCTGCGCT-----------------------------------------------------------AAATT-GCATTTGGCGTCTGTCAAGGACAAAACAAAAC---------GCTGCTTGTGT-G---------------------------------------------------------------------------------------AGT--------GCGAC-----------------------------------------------------------------------CACAACAACAGTAGCAACAACAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCACAAATAACGGAACTGCAAAGTA-------TCAACAGCAA-----------------------------------------------------------------------GAGAA---------------------------------------A-CAG----------------------------AAAGAAAGCCAGATAGGAAAACAAAACAAAGGG---------------------------------------------------------------CAGGAACAAATCACA--------------------------------------------------------------CACGAGG---GCC-----------AAAAACGTAG------------------------------GAA------------------------AGCGG-----ACAT----AAAACGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGCAGGGGCAGTGGCAGCAGCAACA--GCAGTGGAGAG--------------------------------------------GACCCGAGGCGGCAGTGATGTCAATACGTTTCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTGGG--CCACGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGCACA-------ACC-----------------------------A---------------------------------------------------------------------------------------GTGAAAAAAA---------AAGAAAACAAAAAAAAAAA---------GGCAATTAAAAAAAA----AGAA---------------------------------A-------------------------------------------------------------------GAAA-------GAAAAGGAAAAAAATTA------------GAAGAAAAGAAAGTGAATAAACGACCA-----------------------------------------------------------------------------GAGAATG---GCG-----------AAAAGAAAAA------------------------------GAA------------------------ACTGA-----ATAC----TTACTTGASizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2341.004040000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.331010000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.292011000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.292010001
...................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141010000
....GGGGCAGTGGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.071010000
dp5
AGCAGGGGCAGTGGCAGCAGCAACA--GCAGTGGAGAG--------------------------------------------GACCCGAGGCGGCAGTGATGTCAATACGTTTCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGTGGG--CCACGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGCACA-------ACC-----------------------------A---------------------------------------------------------------------------------------GTGAAAAAAA---------AAGAAAACAAAAAAAA-AA---------GGCAATTAAATAAAA----AGAA---------------------------------G-------------------------------------------------------------------GAAA-------GAAAAGGAAAAAAATTA------------GAAGAAAAGAAAGTGAATAAACGACCA-----------------------------------------------------------------------------GAGAATG---GCG-----------AAAAGAAAAA------------------------------GAA------------------------ACTGA-----ATAC----TTACTTGGSizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22353.67161014930601200
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23340.00120010430706000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24317.005104900002000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21312.333702510704000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2356.603303020100000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2036.331901700002000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2332.3370250000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2132.3370600100000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2231.3340110200000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2431.0030300000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.6720200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------------------------------------------C-ACGGAGGTGTTCCGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.6720200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA---------AAGAAAACAAAAAAAA-............................................................................................................................................................................................................................................................................................................................................................................................................2230.6720000000020
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.4020110000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.4020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.4020100100000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CG------------------------------------------------------------C-ACGGAGGTGTTCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ACGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------------C-ACGGAGGTGTTCCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGCG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.1710100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CG------------------------------------------------------------C-ACGGAGGTGTTCCGGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGGTGTTCCGGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000100
............................................................................................................................................................................................................................................................................................................................................................................................................G--CCACGCG------------------------------------------------------------C-ACGGAGGTGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ACGCG------------------------------------------------------------C-ACGGAGGTGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------AAGAAAACAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................18130.0810010000000
droWil2
AGCAGCGGCGGCGGCGGCAGCGGCA--GCAGCAGCTGT--GGCAGCTG-------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGTGGC--ACATCCGGATCCGGTGGCGATGCCAGCGGCAT-----------------------------------------------------------------------------------CAAGGTAGAAC--C--CATAA-----------------CCAC----------------------------------------CA---C---CAGCGGCGAGT--------AAA---------ATCA----------------------------------------------AAAAAA-----A--------------------A--AA-AAA----ATACA-------AACTAATGGAAAACAGAAAGAA-ACAAA--------ACAAAACAAAAAACAC----------------------------------------------TGGAAAATTGCCCA-----------------------------------------------------------------------------CAGAAAT---GT--------------------------------------------------------------------------------------------------GAAGAAASizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
...AGCGGCGGCGGCGGCAGCGGCA--G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.33101000
......GGCGGCGGCGGCAGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.06101000
.............GCGGCAGCGGCA--GCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
droVir3
GGCAGCAGCAACAGCAGCTGCAGCA--GCAGCAGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGGCGATAAAACAAAAACAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AGCGACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------CAGCAGCAACAACAACA---T-----------GAACGA--------------------------------------------------------------------------GCAACAAAAGGAAGA----GGCG----------------------------GAGGCAAGCAAA---------ATGGGAAAAAGCAGCATGGA--------AAA-----AGTCTATGA------------------------------AACAATTAAA---CT-C-GGCCA------------------------------------------------------CACAGAA---GCG-----------AGCAGGCAAA------------------------------CAG------------------------CCTAG-----G--C----ACAGTTAASizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................CGAC-----------------------------------------------------------------------AGCGACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000100000000000000000000000000
...................GCAGCA--GCAGCAGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA---------ATGGGAAAAAGCAGC..............................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG-----------AGCAGGCAAA------------------------------CAG------------------------CCTAG-----................2111.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAAACAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AGCGACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
....................................A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGGCGATAAAACAAAAACAACA----------ACA-----------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001000000000000000000000000000000000000000000000000000000000010000
......................GCA--GCAGCAGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACA---T-----------GAACGA--------------------------------------------------------------------------GC...................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA--------------------------------------------------------------------------GCAACAAAAGGAAGA----GGCG----------------------------GA................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----GGCG----------------------------GAGGCAAGCAAA---------ATGGGAAAA....................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAA---------ATGGGAAAAAGCAGCATG...........................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
....................CAGCA--GCAGCAGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA---T-----------GAACGA--------------------------------------------------------------------------GCAACA...............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAGA----GGCG----------------------------GAGGC.............................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................A----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AGCGACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAA---------ATGGGAAAAAGCAGCATGG..........................................................................................................................................................................................................................................................2611.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------CACAGAA---GCG-----------AGCAGGC......................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTATGA------------------------------AACAATTAAA---CT-C-GGC.............................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...........................GCAGCAGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAGA----GGCG----------------------------GAGGCAAGC.........................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.................................GTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGGCGATAAAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---T-----------GAACGA--------------------------------------------------------------------------GCAACAAAAGGAAGA----GGC...............................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................AC-----------------------------------------------------------------------AGCGACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AAACAAAAACAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGA--------------------------------------------------------------------------GCAACAAAAGGAAGA----GGCG----------------------------GA................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTAAA---CT-C-GGCCA------------------------------------------------------CACA.................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AACAAAAACAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................AAAAACAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGCATGGA--------AAA-----AC.......................................................................................................................................................................................................................................1820.501000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CGACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.153000000000000000000000000000001000000000000000000001010000000000
.................................................................................................................................................................................................................................................AACAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AGCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000001000000000000000000000000000000000000000000000000
........CAACAGCAGCTGCAGCA--GCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.101000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................ACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CAACA----------ACA-----------------------------GCGAC-----------------------------------------------------------------------AGCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.071000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------CAGCAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------CAGCAGCAACAACAACA---T-----------.....................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCGACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.051000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................................................GACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------CAGCAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
.........AACAGCAGCTGCAGCA--GCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------------------------------CAGCAGCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----A---GCAG----------------------------------------CAGCAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----A---GCAG----------------------------------------CAGCAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAG----------------------------------------CAGCAGCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CAACAG-------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------CAGC----A---GCAG----------------------------------------CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
AGCAGCCGCAGCAGCAGCAGCAGCA--GCAGAATAAGA--GCCGGTTG------------------------------------------------------------------------------------CAGCTCTCACCTGCCACCAGCCA--------------CTCCC---------CCTCCGCGAGTTCCATGTCTATC--------CAAATTTTCATG-----------------------------------------------------CAT--------ATGAA-----------------------------------------------------------------------AAGA-----------------------------------------------------------AG-----------------------------------------------------------------------------------CAAAGTAAAAC--C--AATACCAGA----A----A---TCAA-----CTGCACTTGC-----------------AG-------------------------------------------------------------------------------------AAGA----ACAAAAAAA-----A--------------------A--AA-AAA----AAAAA-------AAACAGTCGGAGA-------------------------------------------------------------------------------AGGAAGAGAACAGACAGAC-------------------------------------------------------------------------AGAGTGAC---AGA-----------GAGTGAGAGAG----------------------------------------------------------------------AGAG----ATAGATGASizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
..............CAGCAGCAGCA--GCAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
AGCAGCCGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
GGCAGCAGTGGCAGCAGCAACAACA--GCGACTCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------CT---------------------------GGAAAAGTAGCAGCTAAACAAAAAGACCAAAGAGTGCCAAAGAAGAAAATGCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTGAAAAACCCATT-AAATG-------------------------------------------------------------T----------------------------------------------------------TAGCCAGCAA--------------------------AAAAAAAAA--------------------G--------GA--------------------------------------------------------------------------GAAAAAAGCTA------------AAAAAAAAAGAAAG-----------------------------------------AAAGAAAAA-------------------------A---------AAA--ATAAGCA---GCGACGTCGAC---AACGACGATG------------------------------AGA------------------------ACTGCAAATAAAGC----AAAAGCAASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads
droAna3
AGCAACGGCAGCGACAGCGGCAGCG--GCAGAGCCG--TC------------------------------------GACG-------------------------------------------------------------------------------------------------------CACTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTGTAC---ATAAAATA---------AAGAAAACGAGAAATACAA---------CAAAATTATAATTAATAAAAGAA-------------------------------------------------------------------------------------------------------------------AAAAAAAGAAATTA------------AAAAAAAAAAAA-CA--------------------AC-------------GTAGTTTTTAA---ATCAATTTAAAAGAAATCTTTAAGCATAAATATACAATATAAA---CGTAAAT-----------AAAAGTAATA------------------------------ATA------------------------ACTAA--TTAACAC----TAATTCGASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
..........GCGACAGCGGCAGCG--GCAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........................GCAGAGCCG--TC------------------------------------GACG-------------------------------------------------------------------------------------------------------CACTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......GCAGCGACAGCGGCAGCG--GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAA-------------------------------------------------------------------------------------------------------------------AAAAAAAGAAA............................................................................................................................................................................................................................................18200.102020000
droBip1
GGCTGAGGCAGTGGCTGAGGCAGTG--GCAGTGGCAGA--GGCAGCGGCGC--------------ATCTCGCCATCGACA----------T---------------------------------TCG---------------------------------------------------------------------------------------------------------GGGGAATTGTCAGTACACACTCAGAGGCGGCATCGATCACTTGTGCGAACCCACTGATCCGAC-----------------------------------------------------------------------AACAAC------------------------------------------------AACAACAACAA-----------------------------------------------------------------------------------CAACGA------------CACGGGCACGAA----A---CCAA----------------------------------------CAACAACAACAACAAAA---T-----------ATA--------------------------------------------------TA-------AA-----A---------A-------------A-AAAA-----TAGAAGATA-------G-------------ATGT------GTTGAATG----------------------------------------------------AAAAAAAAGT--------------------AAT----AAA-AAAAGAAAGAAAAG-------------------------------------------------------------------------------------------------------------------------------------------AA-----AAAA----GTAATAGASizeHit CountTotal NormTotal
No Reads
droKik1
AGCAGGCGCAGGCGATGCAGCCGCA--TCACATCTACT--CGTACGTGCTG--------------------CCGGCGGT--------------------------------------------------------------------------------------------------------------C-AGTCACATAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGATGGCAACACATTTGAGTTTGAACTTGAGGGCTAAGACGCTCCGCATGCAACGGATTCATGCGAGGAGGAAA-------ACCTTTAGTTATAGACATAAAA-----------------------------------------------------------------------------------------------------------------------AAAAACCAATGAAA-AA----------------------------------------------------AGCAAAAAAAAAAC-------------------------------------------------------------------AAAA-------CAAAATGGAAAAAATGA------------A---AAAAGAAAGTTAATT----------------------TAT-ATGT-------------------------------------------------------GAC---AGA-----------AAACAAAAATGAAG------------------------------GAA------------------ACAGATCCCGT------AAC----CCAGTTTASizeHit CountTotal NormTotal
No Reads
droFic1
AGCATCAGCAGCAACAACAACAGCA--GCGTGCCA-----CGCTCGTGCAG-------------------------------------------------------------------------CCG---------------------------------------------------------------------------------------------------------GGATTCCTGTTCAGCT----------ACC-----------------------------GCAGCAACCA-TCCGCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAA-----CCGACGCAGCAAATACATCAGGGCCCCAAAGTGACGC------ATAGCAG------TGGT-------------------------------------------------------------A-------AG-----A---------A-------------GA-AGAAGAA----G-------AAGAAGATGAAGA--------------------------AGGAAGAAAAAGAAGGAC-------GA-------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAGGAGAAACCGCAAGC--AAA----CCAAATACSizeHit CountTotal NormTotal
No Reads
droEle1
AGCGACGGCGGCAGCAGCAGCTAAACAGCGACAGAGA-----------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGACAGCAGCGGCAGCGCCAGAACGACAGCGGCAGCTAA-----------------------------------------------AGTGGGACCCAAATT------------------------------------------------------------T-TTGCGGGTACCCCCCGACAAAA-------ATC-----------------------------A---------------------------------------------------------------------------------------AAGAAAAAAAAA--TGTGAAAAAAAAGAAGAAGGG-TACTCCCTCCGC--------------------------AAAAAAATATACGAAAAATTAAGATTAAAAAG-T-------------TAC-------G-------------GGTACCCT--GTTAATTA----------------------------------------------------ATAATAAAAA--------------------ACC----CAA-AA-ATGGGAAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------ATTT----AAAAAGAASizeHit CountTotal NormTotal
No Reads
droRho1
AACAACTGCAGTGGCAACAGCAACA--GCAACTGCA--GC------------------------------------AACA----------A------------------------------------------------CAATCGTCATCAGTCG-------------TC---------GCCGCCTTCGC-AGTCGCAGAGCAATCATAAAAAACAAATCAGCAAACAGCAA----------------------------------------------------------------------------------------------------------------AAAAAAGAAGACAACAAAAAACTG-----------------------AATAGTACTCATGTA------------------------------------------------------------C-TCTCG---------------------------------------------------------AGTACCAGA------------------------------------------------------------------CAACAACC---T-----------AAAAAA--------------------------------------------------------------------------ACAAAAAAAAAATGG----GGAA----------------------------AAGAC----------------------AAAAAAAA----------------------------------------------------------------------------------ATGGGGAAAAGAC------------------------------------------------------------------------------------------------------------------------------------------------AAAA----AAAAGAAASizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCAGCAGCAGCAACACCAGCA--GCAGTAATAG--C------------------------------------CGT-----------ACGGCAGCAACAGCAACACTA--GCCAAAGAAAAGCTGAGCGTAGTT-TT-----------------------------TTTTGTTTCTGCGGTTCGTTC-C---------------------------------------------------------------------------------------TCT--------GCGAT-----------------------------------------------------------------------AAAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGC-------------------AACATCAA-----CTACTTCGGC-----------------AAT---------------------A--------------------------------------------------------------------TAGCAAAA--------G---------A-------------A-A------------------------------------------ACAAA---------TTAAAAAAGAAATACTAAAAAAATGCACTTAAACTT------------A------ATG-----------------AAGAAATAAA-----------------------------------------------------------------------------------------------------GTGTTCAAGTGCTTAAAAAAGTTTGTGTCT---------------------------------------AA----AAGTGAAASizeHit CountTotal NormTotal
No Reads
droTak1
ATTATCCGGGG-GGCAATGGGAGCA--GTGCTGCCG--GC------------------------------------GGCA----------A---------------------------------TCC---------------------------------------------------------------------------------------------------------GGGCTACTATTAGGTT----------ACT---AAGATCACTTGTT---------------------------GGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A--AA------------GAGCCTC---CGCTAAGCAAACG----------------------AA---------------------A---TATGT-------A--TGTAAAAGAAAAGGAAAAGAA-TAT---------GGC--------------------------------------------------------------------------------------------------------TTTAAATCTAAAAAACAAAA-------CAAGATT--------------------------------------------------------AAAACATAAAG--------------------------------------------------------------A---------------------GGAGGCAAAATCAGC--------------------AGGAAATCTAAAAAGAAAGAGAGAGAGAGAAGC-------------------TGAGASizeHit CountTotal NormTotal
No Reads
droEug1
AACAGCAGCAGCAGCAACAGCAGCA--ACAACAGCA--GC------------------------------------AGCAGGATACGAAAACGAGGATGACAA----------------------------------------------CGACCACAGGCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGAGGACACAGATACAGAAACAGGCACAGTCATCAAAACACAGCAAC-------------------A---ATTG----------------------------------------C---------TGCATAA---T-----------CTA--------------------------------------------------TA-------AT-----A---------A-------------A-AATA-----A---------------------------------ACTAA--------ATTAAACAAAAAACCCTTAAA-------GA-----------------------AAGACTAAGT--------------------AAT----CAC-AAACA------------------------------------------------------ACTAGAA---ACG-----------CAAAAGCATT------------------------------AAA------------------------CTGAA-----ACGG----AAACTCAASizeHit CountTotal NormTotal
No Reads
dm3
AGCAGCAGCAACAACAGCAAATGAA--ACACCATAA--GT------------------------------------TGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A--AG------------ATGCGTG---AGCTAGGCAAACG----------------------AC---------------------A---TGTGT-------------------------------------------------------------A-------AA-----A---------A-------------A-AAAA-----AACA-------AAATAACAGATAAGA-----------------------------------------A--------AAA-----AGGCTTTAACAAA------AAG-----------------AAGAATTAAA---TTAAG--------------------------------------------------------------A---------------------GCAGGCAAA----------------TATAATAGGCAGGC---------------------------------------AA----TTGAGAGASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
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Male-body
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..........GCAGCAGCCGCAACA--GCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.09100000000000100000
droSec2
AACAACAGCAGCAGCAGAAT--GCA--ACGCATTTGGA--CGAG------T--------------GCAGCACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCAATTATGTA-----GCCAGCGCAGCAGCAACATCGCAGCAGCAGCAGCAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC----A---GCGA----------------------------------------CTGCAGCAGCAGCAGCGTGA---AAATAGTA---------GTGAAAAAAAGAG---------------------------------------------------------------------------AAA----TAGCA-------AAGCAGCAGACGA--------------------------TAGCAAAAAACGA-------TGGGGGAGGGGCTG------------GGTGGCAAAGGGGCAGGTGGAAAGTAG-----------------------------------------------------------------------------GGAAATG---GTG-----------G-------------------------------------------------------------------------------------CGTAGAASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
AACAACAGCAGCAGCAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
ATCAGGAGCAGCAGGAACAGCAAAA--GCAGCTGGAGA--ATCAGGAGGATCAGGAGAAGCAGGAGCAGCTGG----AG---AATCAGGAGCAGCAGGAACAGCAAGAGCA--GCTGGAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-GGAG------------------------------------------------------------------------------------GATCAGGAGCAGCTGGA-GAATC-------------------AG-----------------GAGCAGCAGGAA-----------CAGCAA---GAGCAGCTGGAA---------A---------ATCA----------------------------------------------GGA------------------G-------------G-ATCA-----GGAAAAGCAGGAGCAGCTGGAGAATCAGGAGCA-GC-------------------------------------------------------------------AGGAACAGCAAAAGCAGCTG-----------------------------------------------------------------------------GAGAATC---AGG-----------AGGATCAGGA------------------------------GAA------------------------CCAGG-----AGAATCAGGAGCAGGASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
.........................................................AAGCAGGAGCAGCTGG----AG---AATCAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGGAGCAGCTGGAGAATCAGGAT..............................................................................................................................................................................................................................................................................................2760.17100000010000
droEre2
AGCAGTAGCAGTAGCAGCAACAATC--GCAACGCAACG--CACAAAAGCAT--------------GCTGCGCT-----------------------------------------------------------AAATT-GCATTTGGCGTCTGTCAAGGACAAAACAAAAC---------GCTGCTTGTGT-G---------------------------------------------------------------------------------------AGT--------GCGAC-----------------------------------------------------------------------CACAACAACAGTAGCAACAACAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCACAAATAACGGAACTGCAAAGTA-------TCAACAGCAA-----------------------------------------------------------------------GAGAA---------------------------------------A-CAG----------------------------AAAGAAAGCCAGATAGGAAAACAAAACAAAGGG---------------------------------------------------------------CAGGAACAAATCACA--------------------------------------------------------------CACGAGG---GCC-----------AAAAACGTAG------------------------------GAA------------------------AGCGG-----ACAT----AAAACGGASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
.............................................................................................................................................................GACAAAACAAAAC---------GCTGCTTGTGT-G---------------------------------------------------------------------------------------AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000

Generated: 06/08/2015 at 04:45 PM