ID:

dpe_1816

 Coordinate:

scaffold_51:400090-400240 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.6 -6.5 -6.3

Flybase annnotation

exon [dper_GLEANR_20452:4]; CDS [Dper\GL18375-cds]; intron [Dper\GL18375-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATCTCCTTTTGGAGCAAGTTTTTTAAGAACTGGAAACTGCAACGACCATGTTTCATCGAGAAGTATTAACCCTCAAAGTTCAGAAGAATCCACAGAAATTGTAAATAAAACACAAGGATATGTTAAGAGGAATTCAAGTTTTAAATTCTTCTATTACTACACGTACTGCATCTGGAATAATTAATACGATGCCCACATCCAGTACAACGAGTTCATTGCACTCCATTTCAGCACCCATATCCCCAAGTCT
****************************************************************************************************************....((.((((((((((((((((.........))))))))).....)).)))))))............*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V057
head
 V042
embryo
 V111
male body
..........................................................................................................................................................TTACTACACGTACTGCATCTGGAATA....................................................................... 26 0 1 3.00 3 3 0 0 0 0
.............................................................................................................................................TTAAATTCTTCTATTACTACACGTACTGC................................................................................. 29 0 1 3.00 3 3 0 0 0 0
................................................................................................................ACAAGGATATGTTAAGAGGA....................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0
................................................ATGTATCATCGGGAAGTAT........................................................................................................................................................................................ 19 2 1 1.00 1 0 0 1 0 0
...............................................................................................................................................................ACACGTACTGCATCTGGAATAATTAAT................................................................. 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................CTACACGTACTGCATCTGGA.......................................................................... 20 0 1 1.00 1 1 0 0 0 0
......................TTTAAGAACTGGAAACTGCAACGACCA.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................ACTGCATCTGGAATAATTAATACGAT............................................................ 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................AGAATCCACAGAAATTGT.................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0
............................................................................................................AAACACAAGGATATGTTAAGAGG........................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0
...............................................................GTATTAACCCTCAAAGTTCAGAAG.................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................AATACGGTGCCAACATCCA................................................. 19 2 1 1.00 1 0 0 1 0 0
....................................................................AACCCTCAAAGTTCAGAAG.................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1
............................................GACCATGTTTCATCGAGAAG........................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
.........................AAGAACTGGAAACTGCAACG.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................................................................ATTCCAGTTCAGCACCCATT........... 20 3 10 0.10 1 0 1 0 0 0

Anti-sense strand reads

ATAGAGGAAAACCTCGTTCAAAAAATTCTTGACCTTTGACGTTGCTGGTACAAAGTAGCTCTTCATAATTGGGAGTTTCAAGTCTTCTTAGGTGTCTTTAACATTTATTTTGTGTTCCTATACAATTCTCCTTAAGTTCAAAATTTAAGAAGATAATGATGTGCATGACGTAGACCTTATTAATTATGCTACGGGTGTAGGTCATGTTGCTCAAGTAACGTGAGGTAAAGTCGTGGGTATAGGGGTTCAGA
***********************************************************************....((.((((((((((((((((.........))))))))).....)).)))))))............**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 V111
male body		 V057
head
 M021
embryo
 V050
head
.............................................................................................................................................................................................................................CAGGTAAAGTCGTGGATATA.......... 20 2 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................ACGGGTGTAGGTCATGTTG.......................................... 19 0 1 1.00 1 0 1 0 0 0
.....................................................AGTAGCTCTTCCTGATTG.................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0
.....................................................................................................................................................................................................................................GTCGAGGGGATAGGGGTT.... 18 2 7 0.14 1 0 0 1 0 0
..........................................................CGCTTCAAATTTGGGAGTT.............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1
........................................................................................................................................................................................................................................GTGGGGATAGGTGTTCAGT 19 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_51:400040-400290 - dpe_1816 TATCTCCTTTTGGAGCAAGTTTTTTAAGAACTGGAAACTGCAA------CGACC-----ATGTTTCATCGAGAAGTATTAACCCTCAAAGTT--------CAGAAGAAT---CCACAGAAATTGTAAATAAAAC------ACAAG--GATATGTTAAGAGGAATTCAAGTTTTAAATTCTTCTATTACTA---CACGTACTGCATCTGGAATAATTAATACGATGCCCACAT------------------CCAGTACAACGAGTTCATTGCACTCCATTTCAGCACCCATATCCCCAAGTCT
dp5 Unknown_group_139:8505-8754 + TATCTCCTTTTGGAGCAAGTTTTTTAAGAACTGGAAACTGCAA------CGACC-----ATGTTTCATCGAGAAGTATTAACCCTCAAAGTT--------CAGAAGAAT---CCACAGAAATTGTAAATAAAAC------ACAAG--GATATGTTAAGAGGAATTCAAGTTT-AAATTCTTCTATTACTA---CACGTACTGCATCTGGAATAATTAATACGATGCCCACAT------------------CCAGTACAACGAGTTCATTGCACTCCATTTCAGCACCCATATCCCCAAGTCT
droWil2 scf2_1100000004943:651979-652219 + TGTCGCCTTTTAATCAACACG-------AGCAAAT------------------------ATCTGTCAGCGGAATGG-ATAAT---CGCAGCA--------TTGGAGATG---G-----AAGCCTTCCATTACCGCACTCACATC---CTTATTGTAAGACCACATCAAGCTT-AAACTCTTCCTTAACTT---CACGGCCTGCAGCTAGCATGATAAGTGCCATGCGTAATTCCAATATCTCAGGCG---CGAGTACCGCAAGTCCACTTCAATCTACATCAGCTCCTATGTCACCCAGCTT
droVir3 scaffold_13052:1292230-1292482 + TGTCCTCATTTGGAGCCGGCAGCGGCGGAAATTGCAATTCAAGTTTTTTTG-------------TCAACGGCTTG------G---AAGGGATCCAGAGTGCAGGCGATG---GCAGTACAGGTCTAACCAAGA------GCTTGT--ACGGCGGCAAGACTGCTTTAAGTTC-AAACTC---------GG---TTCGAACTTCT---GTCATACCAAATACCATGCGCAGCTCCAACTTTTCCGGGGCCAGCAGTACAGCGAGCCCTCTCCAATCGACGTCTGCTCCAATGTCGCCAAGTCT
droMoj3 scaffold_6498:1623192-1623420 + TGTCGCCGTTTGGTGGAAATTGTAGCTCAAGTTTTTTTG-------------------------GAAATGATTTGG-ATGGC---CAAAGTG--------TTAGCGA--------------------------TCAGCCAAAAAGTTTTTTTAACAAACCCAATTCAAATGG-AAACTCATCTAT---AA---CGGGGCGAACCTCGGGAATTATCAACACCATGCGCAACTCTAACCTTTCCGGCG---CAAGTACGGCGAGTCCTTTGCAATCAGTGTCAGCTCCAATGTCGCCAAGCCT
droGri2 scaffold_14822:315885-315935 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCACAGCGAGTCCATTGCAATCGACATCAGCTCCCATGTCACCTAGTCT
droAna3 scaffold_13034:1953778-1954033 + TTTCACCCTTTGGCGGATTTTTTTCCACAAATGATAGTAGTACAGTTTCCGAACCACTTT-----CATTAGGAAATATAACA---CAAGAAA--------CAGATGAAT---C---CCCTGTAGCTATACCCAAAACACACTTGA--GTTTTGCCAAGACAAATTCCAGTAT-AAATTCTTCCATAAACA---AACGAGTTTCCTCGGGAATAAACAGTTCTTCCCGGATAT------------------CGAGTACTGGAAGTTCATTGCAATCGACTTCTGCGCCTTTATCTCCAAGTAT
droBip1 scf7180000391563:10641-10896 - TATCACCGTTTGGTGGATGTTTTTCCACAAATGATAGTAGTAATATTTCGGAACCGCTTT-----CATTAGGAAATATTACG---CAAGGAC--------CGGATGAAT---C---CCCAGTAGTTAATCCCAAAACACACTTAA--GTCTTGTCAAAACAAATTCTTGCTT-AAATTCTTCCATAAACA---ATCGAGTTTCTTCAGGAATAAATAACTCGTCACGAATTT------------------CGAGTACTGCAAGCTCATTGCAATCGAATTCTGCGCCCTTATCTCCAAGTCT
droKik1 scf7180000302413:229297-229561 + TTTCACCATTTGGTTGCAATTATTTACGAAGTGATAAATGTAATCCCAATGAACAAAATT--GTTCATTGGGAAGTATTAATAATAACACCA--------CCGGAGAATCATCCCCAGCAATTGTTAGTAAAACTAATCAGATGG--GGCTGGTTAAGGCTAATTCAAGCAT-AGCCTCTTCTACAAATGCGGTACGTCTCTCATCCGGAATAATTAATTCTATAAGA------------------------AGTACCGGAAGTTCGTTGCAATCCACATCGGCACCCATATCGCCCAGCTT
droFic1 scf7180000453435:27102-27351 + TCTCCCCCTTTGGTGGAAGTTTTTTAAGAACAGAAAACATACATCCTAAGGATCAAATTT-----CATTGCGAGGAATTGAC---CAAGTTT--------CTACAGAAT---C---AGCAACTGAACAAAAGACCACCCAGATGG--GATTCGTTAAAAATAAT---AGTCT-AAATTCTTCTAT---AA---CTCGAACTTCCCCAGGAATGATGAATTCAATAAGGATTT------------------CTAGCACAACAAGTTCTCTGCAATCTACTTCAGCACCCATTTCGCCGAGCTT
droEle1 scf7180000490710:2187-2439 + TTTCCTTCTTTGGTGGCAATTTTCCAAGAAGTGATAACTTAAATTCCAACGATCCAAGTT-----TACTGGGACGTATTAAC---CATGTTT--------CTGCAGAAT---C---AGCAAGTGCTCAAAAAAACATCCATTTGG--GATTTGTTAAAACTAATTCAAATCT-TAGTTCTTCTAC---TA---CGCGTACATCTTCGGGAATGATTAACTCAATAAGGCTTT------------------CTAGTACAGCAAGCTCTTCGCAGTCTACTTCAGCACCGATTTCGCCAAGTTT
droRho1 scf7180000773995:13499-13751 - TTTCACATTTTGGTGACAATTTTCAAGGAAGTGATAACATAAATCCCAATGACCCAATTT-----TATTGGGACGTATAAAC---CAAATTT--------CTGGAGAAT---C---AGTTGTTTCACAAAAAAACACCCAGTTGG--GATTTGCTAAAGCTAATTCAAGTCA-AAGTTCTTCTGC---CA---TGCGTGCATCTTCAGGAATTATTAACTCAATAAGGCTTT------------------GCAGTACAACAAGCTCGTTGCAGTCTACTTCAGCACCCATTTCGCCAAGTTT
droBia1 scf7180000301412:21863-22091 + TTTCGTCCTTCGGAACCACTTTTTCAAGAAGTGATAACCTAAATCCCAAT--------------------------ATTGAC---CAAGTTT--------CTGGAGAGT---C---AGCCATGTCACAAAAAAACAACCAATTAG--GATTTGTTAAAGCTCATTCAGGCCA-AAATTCTTC------AA---CACGACCTTCTGCAGGAATGATTAATTCAATAAGAATAT------------------CCAGCACAGCAAGTTCGTTACAGAGTACTTCAGCTCCCATTTCACCTAGCCT
droTak1 scf7180000412836:35135-35372 + ATTCCACATTTGGGAACAGTTTTTCAAGAAATGATAACTTAAATACCACTGAG--------------------CGTGTTAAC---CAAGTTT--------CTGGAGAGT---C---ACCTATGGCACAAAAAACCAACCAGTTGG--GATATGTTAAAACTAATTCAAGCCT-TAGTTCCTCCAC---AA---CGCGCACTTCTTCAGGAATGGTTAATTCAATAAGGATTT------------------CTAGTACAGCAAGTTCGTTGCAGTCTACTTCAGCACCTATTTCGCCGAGTTT
droEug1 scf7180000408984:60245-60497 - ATTCCCCGTTTTCTGGTACTTTTCCAAGAAATGATAACTTGAATCCCAATGAGTCAATAT-----CATTAGCTCATGGTAAC---GAAGTTT--------CTGGAGAAT---C---AGCAATTGCACAAAAAACCAACCAGTTGG--GATATGTAAAATCTAATTCAAACCT-AAATGTATCTAC---CA---CGCGTACTTCTTCGGGAATGATTAATTCCATTAAAATAT------------------CTAGTACAGCAAGTTCTTTACAGTCTACTTCAGCCCCCATTTCGCCGAGCTT
dm3 chr4:1224140-1224386 + TTTCCCCATTCGGTGGTAGTTTTGTACGATGTGATGACATAAATCCAATTGAGCCAACTG-----TATTACGACCTAATAGT---CATGGTG--------CTGGGGAAC---C---AGAAAATGCACATAGAACGGCCCAGTTGG--GACTTAGTAAAGCTAATTCAAGCCT-AAGTTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CCAGTACATCAAGCTCGTTACAGTCTACCTCAGCTCCTATTTCGCCGAGCGT
droSim2 4:984687-984933 + TTTCCCCGTTCGGTGGTAGTTTTGTACGATGTGATGACATAAATCCAATTGAGCCAACTA-----TATTAGGACCTAATAAT---CATGGTT--------CTGGGGAAC---C---AGAAAATGCACATAGAACCGCCCAGTTGG--GACTTATTAAAGCTAATTCAAGCCT-AAGCTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CCAGTACATCAAGTTCGTTACAGTCTACCTCAGCTCCTATTTCGCCGAGCGT
droSec2 scaffold_40:249153-249399 + TTTCCCCATTCGGTGGTAGTTTTGTACGATGTGATGACATAAATCCAATTGAGCCAACTA-----TATTAGGACCTAATAAT---CATGGTT--------CTGGGGAAC---C---AGAAAATGCACATAGAACCGCCCAGTTGG--GACTTATTAAAGCTAATTCAAGCCT-AAGCTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CCAGTACATCAAGTTCGTTACAGTCTACCTCAGCTCCTATTTCGCCGAGCGT
droYak3 4:1328936-1329182 + TTTCCCCATTCGGTGGTAGCTTCGTAAGATGTGATGACATAGATCCAAATGAGTCAACTA-----TATTGGGAGGAAATAAT---CAATGCT--------CTGGGGAAC---C---AGAAAATGCCCATAAAACCACCCAGTTGG--GATTTGTTAAAGCTAATTCAGGCCT-AAGCTC---------TA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CTAGTGCAGCAAGTTCTTTACAATCTAATTCAGCACCTATTTCGCCAAGCCT
droEre2 scaffold_4512:17743-17989 - TTTCCCCATTTGGTGGTAGTTTCGTAAGATGTGATGACATAAATCCAAATGAGTCAACTA-----TATTGCGACGAAGCAAT---CAAGGTT--------CTGGAGAAC---C---AGAAAATGCCCATAAAAACACCCAGTTGG--GTTTGGTTAAAGCTAATTCAAGCCT-AAGTTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTAGAATTT------------------CCAGTACAGCAAGTTCATTACAATCTACTTCAGCACCTATTTCCCCGAGTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TATCTCCTTTTGGAGCAAGTTTTTTAAGAACTGGAAACTGCAA------CGACC-----ATGTTTCATCGAGAAGTATTAACCCTCAAAGTT--------CAGAAGAAT---CCACAGAAATTGTAAATAAAAC------ACAAG--GATATGTTAAGAGGAATTCAAGTTTTAAATTCTTCTATTACTA---CACGTACTGCATCTGGAATAATTAATACGATGCCCACAT------------------CCAGTACAACGAGTTCATTGCACTCCATTTCAGCACCCATATCCCCAAGTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................TTACTA---CACGTACTGCATCTGGAATA.........................................................................................2613.003300000
...........................................................................................................................................................................TTAAATTCTTCTATTACTA---CACGTACTGC...................................................................................................2913.003300000
............................................................................................................................................ACAAG--GATATGTTAAGAGGA............................................................................................................................................2012.002200000
.............................................................................................................................................................................................A---CACGTACTGCATCTGGAATAATTAAT...................................................................................2711.001100000
...........................................................................................................................................................................................CTA---CACGTACTGCATCTGGA............................................................................................2011.001100000
......................TTTAAGAACTGGAAACTGCAA------CGACC-----A..................................................................................................................................................................................................................................................2711.001010000
......................................................................................................................................................................................................ACTGCATCTGGAATAATTAATACGAT..............................................................................2611.001100000
........................................................................................................AGAAT---CCACAGAAATTGT.................................................................................................................................................................................1811.001001000
..................................................................................................................................AAAC------ACAAG--GATATGTTAAGAGG.............................................................................................................................................2311.001010000
..........................................................................GTATTAACCCTCAAAGTT--------CAGAAG....................................................................................................................................................................................................2411.001010000
...............................................................................AACCCTCAAAGTT--------CAGAAG....................................................................................................................................................................................................1911.001000001
..................................................GACC-----ATGTTTCATCGAGAAG...................................................................................................................................................................................................................................2011.001010000
.........................AAGAACTGGAAACTGCAA------CG...........................................................................................................................................................................................................................................................2011.001010000
dp5
TATCTCCTTTTGGAGCAAGTTTTTTAAGAACTGGAAACTGCAA------CGACC-----ATGTTTCATCGAGAAGTATTAACCCTCAAAGTT--------CAGAAGAAT---CCACAGAAATTGTAAATAAAAC------ACAAG--GATATGTTAAGAGGAATTCAAGTTT-AAATTCTTCTATTACTA---CACGTACTGCATCTGGAATAATTAATACGATGCCCACAT------------------CCAGTACAACGAGTTCATTGCACTCCATTTCAGCACCCATATCCCCAAGTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................TA---CACGTACTGCATCTGGAATAAT.......................................................................................2412.0020200000000
..........................................A------CGACC-----ATGTTTCATCGAGA.....................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................AATAAAAC------ACAAG--GATATGTTAAGAGGA............................................................................................................................................2811.0010000001000
....................................................................................................................................AC------ACAAG--GATATGTTAAGAGGA............................................................................................................................................2211.0010100000000
....................................................................................................CAGAAGAAT---CCACAGAAATT...................................................................................................................................................................................2011.0010000100000
.................................................................................................................................................................................................CACGTACTGCATCTGGAATAATTAATAC.................................................................................2811.0010010000000
................................................................................................................................................................................................................................................................CAACGAGTTCATTGCACTCCATTTCAG...................2711.0010100000000
..................................................................................................................................AAAC------ACAAG--GATATGTTAAGAGGA............................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................................................ACAACGAGTTCATTGCACTCC..........................2111.0010100000000
...........................................................................................................................................................................................CTA---CACGTACTGCATCTGGAA...........................................................................................2111.0010100000000
.............................ACTGGAAACTGCAA------CGACC-----AT.................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................CGAGTTCATTGCACTCCATTTCAGCAC................2711.0010000100000
.............................................................................................................................................CAAG--GATATGTTAAGAGGA............................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................ATCTGGAATAATTAATACGATGCCC..........................................................................2511.0010010000000
.....................................................................................................................................................................................................................ATTAATACGATGCCCACAT------------------CCAGT...............................................2411.0010010000000
.............................................................................................................................................................................................................................GATGCCCACAT------------------CCAGTACAACGAGTTC....................................2711.0010001000000
..........TGGAGCAAGTTTTTTAAGAA................................................................................................................................................................................................................................................................................2011.0010000001000
...............................................................................................................................ATAAAAC------ACAAG--GATATGTTAAGAGGA............................................................................................................................................2711.0010010000000
.................................GAAACTGCAA------CGACC-----ATGTTT.............................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................GTTCATTGCACTCCATTTCAGCACCCAT............2811.0010010000000
droWil2
TGTCGCCTTTTAATCAACACG-------AGCAAAT------------------------ATCTGTCAGCGGAATGG-ATAAT---CGCAGCA--------TTGGAGATG---G-----AAGCCTTCCATTACCGCACTCACATC---CTTATTGTAAGACCACATCAAGCTT-AAACTCTTCCTTAACTT---CACGGCCTGCAGCTAGCATGATAAGTGCCATGCGTAATTCCAATATCTCAGGCG---CGAGTACCGCAAGTCCACTTCAATCTACATCAGCTCCTATGTCACCCAGCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................TGCGTAATTCCAATATCTCAGGCG---CGAG................................................2813.00303000
..............................................................TGTCAGCGGAATGG-ATAAT---CGC......................................................................................................................................................................................................................2211.00100100
........................................................................................................................................................................................TAACTT---CACGGCCTGCAGCT...............................................................................................2011.00100010
.......................................................................................................................................................................................................................................TCCAATATCTCAGGCG---CGAGT...............................................2111.00101000
.......................................................................................................................................................................................................................AAGTGCCATGCGTAATTCCAATATCTCA...........................................................2811.00101000
........................................................................................................................................................................................TAACTT---CACGGCCTGCAGCTAGCATGA........................................................................................2711.00101000
............................................................................................................................................................................................................................................................................TTCAATCTACATCAGCTCCTATGTCACC......2811.00101000
.............................................................................................................................................................................AAACTCTTCCTTAACTT---CACGGC.......................................................................................................2311.00101000
.......................................................................AATGG-ATAAT---CGCAGCA--------TTGGAGAT..................................................................................................................................................................................................2511.00100100
.......................................................................................................................................................................................................................................................................TCCACTTCAATCTACATCAGCTCCT..............2511.00101000
.............................GCAAAT------------------------ATCTGTCAGCGGAATGG-.................................................................................................................................................................................................................................2311.00100010
........................................................................................................................................................................................TAACTT---CACGGCCTGCAGCTAGCA...........................................................................................2411.00101000
..................................................................................................................................................................CATCAAGCTT-AAACTCTTCCT......................................................................................................................2111.00110000
.............................GCAAAT------------------------ATCTGTCAGCGGAATGG-ATA..............................................................................................................................................................................................................................2611.00100100
...............................................................................................................................................................................................................................................................ACCGCAAGTCCACTTCAATCTACATCAGC..................2911.00101000
............................................................................................................................................CATC---CTTATTGTAAGACCACATCAAGC....................................................................................................................................2711.00100010
...........................................................................G-ATAAT---CGCAGCA--------TTGGAGATG---G-----........................................................................................................................................................................................2311.00100010
..........TAATCAACACG-------AGCAAAT------------------------ATCTGTCAGCG........................................................................................................................................................................................................................................2911.00101000
.........................................................................TGG-ATAAT---CGCAGCA--------TTGGAGATG---G-----AA......................................................................................................................................................................................2711.00100010
...............................................................................AAT---CGCAGCA--------TTGGAGATG---..............................................................................................................................................................................................1911.00100010
...........................................................................................................................TTCCATTACCGCACTCACATC---CT.........................................................................................................................................................2311.00101000
..............................................................................TAAT---CGCAGCA--------TTGGAGATG---..............................................................................................................................................................................................2011.00100010
........................................................................ATGG-ATAAT---CGCAGCA--------TTGGAGAT..................................................................................................................................................................................................2411.00100100
..........................................................................................................................................................................TT-AAACTCTTCCTTAACTT---CACGGCC......................................................................................................2611.00101000
............................AGCAAAT------------------------ATCTGTCAGCGGAATGG-A................................................................................................................................................................................................................................2511.00100100
...........................................................................................................................TTCCATTACCGCACTCACATC---CTTATTG....................................................................................................................................................2811.00101000
.....................................................................................................................................................................................................................................................CG---CGAGTACCGCAAGTCCACTTCAATC...........................2711.00101000
.......................................................................................................................................................................................................................................................................TCCACTTCAATCTACATCAGCTCCTATG...........2811.00101000
............................................................................................................................TCCATTACCGCACTCACATC---CTTATTG....................................................................................................................................................2711.00101000
........................................................................................................................................................................................TAACTT---CACGGCCTGCAGC................................................................................................1911.00101000
................................AAT------------------------ATCTGTCAGCGGAATGG-.................................................................................................................................................................................................................................2011.00100010
.............................................................................................................................................................................................T---CACGGCCTGCAGCTAGCATGATAAG....................................................................................2611.00101000
..............................................................................TAAT---CGCAGCA--------TTGGAGAT..................................................................................................................................................................................................1911.00101000
.............................................................................ATAAT---CGCAGCA--------TTGGAGATG---G-----A.......................................................................................................................................................................................2311.00100010
.......................................................................................................................................................................................................................................................................TCCACTTCAATCTACATCAGCTCCTA.............2611.00101000
......................................................................................................................................................................................................................................TTCCAATATCTCAGGCG---CGAGTACCG...........................................2611.00101000
.................................................................................T---CGCAGCA--------TTGGAGATG---G-----A.......................................................................................................................................................................................1911.00100010
...........................................................................................................................................................................T-AAACTCTTCCTTAACTT---CACGGCCTGC...................................................................................................2811.00101000
......................................................................GAATGG-ATAAT---CGCAGCA--------TTGGAGA...................................................................................................................................................................................................2511.00101000
...............................AAAT------------------------ATCTGTCAGCGGAATGG-AT...............................................................................................................................................................................................................................2311.00100100
droVir3
TGTCCTCATTTGGAGCCGGCAGCGGCGGAAATTGCAATTCAAGTTTTTTTG-------------TCAACGGCTTG------G---AAGGGATCCAGAGTGCAGGCGATG---GCAGTACAGGTCTAACCAAGA------GCTTGT--ACGGCGGCAAGACTGCTTTAAGTTC-AAACTC---------GG---TTCGAACTTCT---GTCATACCAAATACCATGCGCAGCTCCAACTTTTCCGGGGCCAGCAGTACAGCGAGCCCTCTCCAATCGACGTCTGCTCCAATGTCGCCAAGTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................TAAGTTC-AAACTC---------GG---TTCGAA.......................................................................................................2112.002000000000000000000000010000000000010000000000000000000000000000
...............................................................................................................................................GT--ACGGCGGCAAGACTGCTTTAAGTTC-.................................................................................................................................2712.002000000000000000000000000000000000000010000000000000000000000010
.....................................................................................AAGGGATCCAGAGTGCAGGCG....................................................................................................................................................................................................2112.002000000000200000000000000000000000000000000000000000000000000000
........................................................................................................................GGTCTAACCAAGA------GCTTGT--AC.........................................................................................................................................................2112.002000000000000001000000000000000000000010000000000000000000000000
.............AGCCGGCAGCGGCGGAAATTGC...........................................................................................................................................................................................................................................................................2212.002001000000000000000000000000000000000100000000000000000000000000
...................................................................................................................GTACAGGTCTAACCAAGA------GCT................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATACCAAATACCATGCGCAGCTC.....................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GACGTCTGCTCCAATGTCGC.......2011.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ATACCATGCGCAGCTCCAACT................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................CGGCGGCAAGACTGCTTTAAGTTC-.................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
......CATTTGGAGCCGGCAGCGGCGG..................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.................................................TG-------------TCAACGGCTTG------G---AAGGGATCCAGA.............................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATACCAAATACCATGCGCA.........................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
............................................TTTTTTG-------------TCAACGGCTTG------G---AAGGG....................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
TGTCCTCATTTGGAGCCGGCA.........................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TGCTTTAAGTTC-AAACTC---------G.................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..................................................................AACGGCTTG------G---AAGGGATCCAGAGTGCA........................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................AAGA------GCTTGT--ACGGCGGCAAG................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................CTTG------G---AAGGGATCCAGAGTGC.........................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTCT---GTCATACCAAATACCATGCGC..........................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................GGCTTG------G---AAGGGATCCAGAGTGCAGGC.....................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................GGTCTAACCAAGA------GCTTGT--ACGGC......................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AGA------GCTTGT--ACGGCGGCA..................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GGTCTAACCAAGA------GCTTGT--ACG........................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AACCAAGA------GCTTGT--ACGGC......................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TC-AAACTC---------GG---TTCGAACTTCT---GT.............................................................................................2311.001000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CGAACTTCT---GTCATACCAAATACCATGC............................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................AACCAAGA------GCTTGT--ACGGCGG....................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................AACGGCTTG------G---AAGGGATCCA...............................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................ATACCAAATACCATGCGCAGCT......................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................TAACCAAGA------GCTTGT--ACGGCG.....................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................GCTTGT--ACGGCGGCAAGACTGC...........................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................CCAAGA------GCTTGT--ACGGCGG....................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AACCAAGA------GCTTGT--ACGGCGGC...................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CTC---------GG---TTCGAACTTCT---GTCAT..........................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................AACTC---------GG---TTCGAACTTCT---GT.............................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................CGGCAGCGGCGGAAATTGCA..........................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................AACTC---------GG---TTCGAACTTCT---GTCATACCAA.....................................................................................2811.001000000000000000000000000000000000000100000000000000000000000000
..........................................GTTTTTTTG-------------TCAACGGCT.....................................................................................................................................................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................CAAGA------GCTTGT--ACGGCGGC...................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
......CATTTGGAGCCGGCAGCGGCG...................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...................................................................................................GCAGGCGATG---GCAGTACAG.....................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................TACAGGTCTAACCAAGA------GCTTGT--ACGGC......................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................GTACAGGTCTAACCAAGA------GCTT...............................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
......CATTTGGAGCCGGCAGCGGCGGA.................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TTC-AAACTC---------GG---TTCGAACTTCT---GTC............................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................GCAGGCGATG---GCAGTACA......................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................ACGGCGGCAAGACTGCTTTAAGT....................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AGA------GCTTGT--ACGGCGGCAAGACT.............................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TGTCGCCGTTTGGTGGAAATTGTAGCTCAAGTTTTTTTG-------------------------GAAATGATTTGG-ATGGC---CAAAGTG--------TTAGCGA--------------------------TCAGCCAAAAAGTTTTTTTAACAAACCCAATTCAAATGG-AAACTCATCTAT---AA---CGGGGCGAACCTCGGGAATTATCAACACCATGCGCAACTCTAACCTTTCCGGCG---CAAGTACGGCGAGTCCTTTGCAATCAGTGTCAGCTCCAATGTCGCCAAGCCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................AATTATCAACACCATGCGC..........................................................................1911.001000100
........................................................................TTGG-ATGGC---CAAAGTG--------TTA.......................................................................................................................................................................................................1911.001000001
......CGTTTGGTGGAAATTGTAGCTCAAG...............................................................................................................................................................................................................................................................................2511.001100000
................................................................................GC---CAAAGTG--------TTAGCGA--------------------------TCAGCC...................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................ACGGCGAGTCCTTTGCAATC...........................2011.001100000
.....................................................................................CAAAGTG--------TTAGCGA--------------------------TCAGCCAAAAAGT............................................................................................................................................................2711.001000001
........................................................................TTGG-ATGGC---CAAAGTG--------TTAGCGA--------------------------TC.......................................................................................................................................................................2511.001100000
.........................................................................................................................................CCAAAAAGTTTTTTTAACAAACCCA............................................................................................................................................2511.001100000
......................................................................................AAAGTG--------TTAGCGA--------------------------TCAGCCA..................................................................................................................................................................2011.001100000
....................................TTG-------------------------GAAATGATTTGG-ATGGC---C........................................................................................................................................................................................................................2111.001000001
.....................................................................GATTTGG-ATGGC---CAAAGTG--------TTAGC.....................................................................................................................................................................................................2411.001000001
...................................................................................................................................................................................................................................................GGCG---CAAGTACGGCGAGTCCTTTG................................2411.001100000
.........TTGGTGGAAATTGTAGCTCAAG...............................................................................................................................................................................................................................................................................2211.001000001
.........TTGGTGGAAATTGTAGCTCAA................................................................................................................................................................................................................................................................................2111.001000001
...........................................................................G-ATGGC---CAAAGTG--------TTAGCGA--------------------------TC.......................................................................................................................................................................2211.001000001
........................GCTCAAGTTTTTTTG-------------------------GAAATGATT.....................................................................................................................................................................................................................................2411.001000010
..........................................................................................................................................................................................................................CACCATGCGCAACTCTAACC................................................................2011.001000100
.................................................................................................................................................................................................................................CGCAACTCTAACCTTTCCGGCG---CAAGT...............................................2711.001100000
...................................................................................................................................................................................................................................................GGCG---CAAGTACGGCGAGTCCTT..................................2211.001100000
..................................................................AATGATTTGG-ATGGC---CAAAGTG--------TTAGC.....................................................................................................................................................................................................2711.001000001
....................................................................................................................................................................................TCTAT---AA---CGGGGCGAACCTCGGGA............................................................................................2411.001100000
...........................................................................................G--------TTAGCGA--------------------------TCAGCCAAAAAGG............................................................................................................................................................2111.001010000
.......GTTTGGTGGAAATTGTAGCTCAAGTTT............................................................................................................................................................................................................................................................................2711.001000001
....................................................................................................................................................................................................................................................................GAGTCCTTTGCAATCAGTGTCAGCT.................2511.001100000
...........................................................................................................................................................................................................................................................AAGTACGGCGAGTCCTTTGCAATCAGT........................2711.001000001
...............................................................................................................................................................................................................................................................................AATCAGTGTCAGCTCCAATGTCGCCA.....2611.001100000
droGri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCACAGCGAGTCCATTGCAATCGACATCAGCTCCCATGTCACCTAGTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTTCACCCTTTGGCGGATTTTTTTCCACAAATGATAGTAGTACAGTTTCCGAACCACTTT-----CATTAGGAAATATAACA---CAAGAAA--------CAGATGAAT---C---CCCTGTAGCTATACCCAAAACACACTTGA--GTTTTGCCAAGACAAATTCCAGTAT-AAATTCTTCCATAAACA---AACGAGTTTCCTCGGGAATAAACAGTTCTTCCCGGATAT------------------CGAGTACTGGAAGTTCATTGCAATCGACTTCTGCGCCTTTATCTCCAAGTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................GTACAGTTTCCGAACCACTTC-----.............................................................................................................................................................................................................................................2111.001010000
..TCACCCTTTGGCGGATTTTTTT......................................................................................................................................................................................................................................................................................2211.001010000
.................................ATAGTAGTACAGTTTCCGAACCACT....................................................................................................................................................................................................................................................2511.001010000
.......................................................................................................................................................TGCCAAGACAAATTCCAGC....................................................................................................................................1911.001010000
......................................................................................................................................................TTGCCAAGACAAATTCCAGT....................................................................................................................................2011.001010000
..........................................................................................................AAT---C---CCCTGTAGCTATACCCAAA.......................................................................................................................................................................2311.001010000
.................................ATAGTAGTACAGTTTCCGAACCACTTT-----.............................................................................................................................................................................................................................................2711.001100000
.................................................................................A---CAAGAAA--------CAGATGAAT---C---CCCTGT....................................................................................................................................................................................2411.001010000
.........................................................................................................GAAT---C---CCCTGTAGCTATAC............................................................................................................................................................................1911.001100000
...........................................AGTTTCCGAACCACTTT-----CATTAGGA.....................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................CTTCCCGGATAT------------------CGAGTACTGG..........................................2211.001010000
.........................................................................................................................................................................................................................................................................CATTGCAATCGACTTCTGCGCCTTTAT..........2711.001010000
.......................................GTACAGTTTCCGAACCACTTT-----.............................................................................................................................................................................................................................................2111.001001000
...........................................................................................................................GCTATACCCAAAACACACTTGA--GTTT.......................................................................................................................................................2611.001010000
........................................................................................................................................................................................................................................................................TCATTGCAATCGACTTCTGCGCCTT.............2511.001010000
..........................................................................................AA--------CAGATGAAT---C---CCCTGTAGCT................................................................................................................................................................................2211.001000010
droBip1
TATCACCGTTTGGTGGATGTTTTTCCACAAATGATAGTAGTAATATTTCGGAACCGCTTT-----CATTAGGAAATATTACG---CAAGGAC--------CGGATGAAT---C---CCCAGTAGTTAATCCCAAAACACACTTAA--GTCTTGTCAAAACAAATTCTTGCTT-AAATTCTTCCATAAACA---ATCGAGTTTCTTCAGGAATAAATAACTCGTCACGAATTT------------------CGAGTACTGCAAGCTCATTGCAATCGAATTCTGCGCCCTTATCTCCAAGTCTSizeHit CountTotal NormTotal
No Reads
droKik1
TTTCACCATTTGGTTGCAATTATTTACGAAGTGATAAATGTAATCCCAATGAACAAAATT--GTTCATTGGGAAGTATTAATAATAACACCA--------CCGGAGAATCATCCCCAGCAATTGTTAGTAAAACTAATCAGATGG--GGCTGGTTAAGGCTAATTCAAGCAT-AGCCTCTTCTACAAATGCGGTACGTCTCTCATCCGGAATAATTAATTCTATAAGA------------------------AGTACCGGAAGTTCGTTGCAATCCACATCGGCACCCATATCGCCCAGCTTSizeHit CountTotal NormTotal
No Reads
droFic1
TCTCCCCCTTTGGTGGAAGTTTTTTAAGAACAGAAAACATACATCCTAAGGATCAAATTT-----CATTGCGAGGAATTGAC---CAAGTTT--------CTACAGAAT---C---AGCAACTGAACAAAAGACCACCCAGATGG--GATTCGTTAAAAATAAT---AGTCT-AAATTCTTCTAT---AA---CTCGAACTTCCCCAGGAATGATGAATTCAATAAGGATTT------------------CTAGCACAACAAGTTCTCTGCAATCTACTTCAGCACCCATTTCGCCGAGCTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTCCTTCTTTGGTGGCAATTTTCCAAGAAGTGATAACTTAAATTCCAACGATCCAAGTT-----TACTGGGACGTATTAAC---CATGTTT--------CTGCAGAAT---C---AGCAAGTGCTCAAAAAAACATCCATTTGG--GATTTGTTAAAACTAATTCAAATCT-TAGTTCTTCTAC---TA---CGCGTACATCTTCGGGAATGATTAACTCAATAAGGCTTT------------------CTAGTACAGCAAGCTCTTCGCAGTCTACTTCAGCACCGATTTCGCCAAGTTTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTCACATTTTGGTGACAATTTTCAAGGAAGTGATAACATAAATCCCAATGACCCAATTT-----TATTGGGACGTATAAAC---CAAATTT--------CTGGAGAAT---C---AGTTGTTTCACAAAAAAACACCCAGTTGG--GATTTGCTAAAGCTAATTCAAGTCA-AAGTTCTTCTGC---CA---TGCGTGCATCTTCAGGAATTATTAACTCAATAAGGCTTT------------------GCAGTACAACAAGCTCGTTGCAGTCTACTTCAGCACCCATTTCGCCAAGTTTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTCGTCCTTCGGAACCACTTTTTCAAGAAGTGATAACCTAAATCCCAAT--------------------------ATTGAC---CAAGTTT--------CTGGAGAGT---C---AGCCATGTCACAAAAAAACAACCAATTAG--GATTTGTTAAAGCTCATTCAGGCCA-AAATTCTTC------AA---CACGACCTTCTGCAGGAATGATTAATTCAATAAGAATAT------------------CCAGCACAGCAAGTTCGTTACAGAGTACTTCAGCTCCCATTTCACCTAGCCTSizeHit CountTotal NormTotal
No Reads
droTak1
ATTCCACATTTGGGAACAGTTTTTCAAGAAATGATAACTTAAATACCACTGAG--------------------CGTGTTAAC---CAAGTTT--------CTGGAGAGT---C---ACCTATGGCACAAAAAACCAACCAGTTGG--GATATGTTAAAACTAATTCAAGCCT-TAGTTCCTCCAC---AA---CGCGCACTTCTTCAGGAATGGTTAATTCAATAAGGATTT------------------CTAGTACAGCAAGTTCGTTGCAGTCTACTTCAGCACCTATTTCGCCGAGTTTSizeHit CountTotal NormTotal
No Reads
droEug1
ATTCCCCGTTTTCTGGTACTTTTCCAAGAAATGATAACTTGAATCCCAATGAGTCAATAT-----CATTAGCTCATGGTAAC---GAAGTTT--------CTGGAGAAT---C---AGCAATTGCACAAAAAACCAACCAGTTGG--GATATGTAAAATCTAATTCAAACCT-AAATGTATCTAC---CA---CGCGTACTTCTTCGGGAATGATTAATTCCATTAAAATAT------------------CTAGTACAGCAAGTTCTTTACAGTCTACTTCAGCCCCCATTTCGCCGAGCTTSizeHit CountTotal NormTotal
No Reads
dm3
TTTCCCCATTCGGTGGTAGTTTTGTACGATGTGATGACATAAATCCAATTGAGCCAACTG-----TATTACGACCTAATAGT---CATGGTG--------CTGGGGAAC---C---AGAAAATGCACATAGAACGGCCCAGTTGG--GACTTAGTAAAGCTAATTCAAGCCT-AAGTTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CCAGTACATCAAGCTCGTTACAGTCTACCTCAGCTCCTATTTCGCCGAGCGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................TGCACATAGAACGGCCCAGTTGG--GACT.......................................................................................................................................................27163.006300000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000002000050002000000400003000103000100000000000000000000000000000000000000000000000000000000000000000100150000004010000000000000001022200000
...........................................................................TAATAGT---CATGGTG--------CTGGGGAAC---C---AGA.......................................................................................................................................................................................27158.005800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000010000001000200000000000201000000000000000000000000000000000000000000000000000000000000000000000001100000000001000000000000012423700000
............................................................................................................................CACATAGAACGGCCCAGTTGG--GACT.......................................................................................................................................................25136.003600000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000040001000000400000000003001000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000121200000
......................................................................................ATGGTG--------CTGGGGAAC---C---AGAAAATGC.................................................................................................................................................................................25132.003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261805000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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...........................................................................TAATAGT---CATGGTG--------CTGGGGA...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................TGG--GACTTAGTAAAGCTAATTCAAG.....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ACCTAATAGT---CATGGTG--------CTGGG.....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCAAGCTCGTTACAGTCTACCTC.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTCCCCATTCGGTGGTAGTTTTGTA....................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................T---CATGGTG--------CTGGGGAAC---C---AGAAA.....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................T---CATGGTG--------CTGGGGAAC---C---AGAAAATGCAC...............................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................AAGCTCGTTACAGTCTACCTCAGC..................2411.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCCATTCGGTGGTAGTTTTG......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CAATTGAGCCAACTG-----TATC.........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TACGATGTGATGACATAAATCCAAT.............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AGT---CATGGTG--------CTGGGGAAC---C---AGA.......................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................AGT---CATGGTG--------CTGGGGAA..................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................TC---------AA---CGCGTTCTTCTTCAGGGATTGTTAA....................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................A---CGCGTTCTTCTTCAGGGA...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TAATAGT---CATGGTG--------CTGGG.....................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TTTCCCCGTTCGGTGGTAGTTTTGTACGATGTGATGACATAAATCCAATTGAGCCAACTA-----TATTAGGACCTAATAAT---CATGGTT--------CTGGGGAAC---C---AGAAAATGCACATAGAACCGCCCAGTTGG--GACTTATTAAAGCTAATTCAAGCCT-AAGCTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CCAGTACATCAAGTTCGTTACAGTCTACCTCAGCTCCTATTTCGCCGAGCGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................TGCACATAGAACCGCCCAGTTGG--GACT.......................................................................................................................................................27110.001000010036000000000
..................................................................................................................................................................................................................................................................TCAAGTTCGTTACAGTCTACCTCAGC..................2616.00600000031200000000
...........................................................................TAATAAT---CATGGTT--------CTGGGGAAC---C---AGA.......................................................................................................................................................................................2712.00200000002000000000
............................................................................................................................CACATAGAACCGCCCAGTTGG--GACT.......................................................................................................................................................2512.00200000011000000000
.........................................................................................................................................................................................................................................................................CGTTACAGTCTACCTCAGCTCCTATT...........2612.00200000020000000000
............................................................................................................................................................................................................................................................AGTACATCAAGTTCGTTACAGTCTACCTC.....................2911.00101000000000000000
...................TTTTGTACGATGTGATGACATAAATC.................................................................................................................................................................................................................................................................2611.00100000000000010000
.........TCGGTGGTAGTTTTGTACGATGTGA............................................................................................................................................................................................................................................................................2511.00100000001000000000
......................................................................................................................................................................................................TCTTCTTCAGGGATTGTTAATTCAATT.............................................................................2711.00100000000010000000
................................................................................................................................................................................................................................................................CATCAAGTTCGTTACAGT............................1811.00100100000000000000
.....................................................................................................................GAAAATGCACATAGAACCGCCCAGTTGG--G..........................................................................................................................................................2911.00100010000000000000
...............GTAGTTTTGTACGAT................................................................................................................................................................................................................................................................................1511.00100000000001000000
...........................................................................................................................................................................................................TTCAGGGATTGTTAAT...................................................................................1611.00100000010000000000
...............................................................................................................................................................................GCTC---------AA---CGCGTTCTTCTTCAGGGATT.........................................................................................2611.00100100000000000000
...................................................................TTAGGACCTAATAAT---CATGGTT--------CTGGGGA...................................................................................................................................................................................................2911.00100000010000000000
.................................................................................................................................................................................................................................................................................TCTACCTCAGCTCCTATTTCGCCGA....2511.00100000010000000000
.......................................................................................................................................................................................................................................T------------------CCAGTACATCAAGTTCGTTACAGTC...........................2611.00100000000010000000
............................................................................................................................................................................................AA---CGCGTTCTTCTTCAGGGATTG........................................................................................2311.00110000000000000000
..TCCCCGTTCGGTGGTAGTTTTGTACGATG...............................................................................................................................................................................................................................................................................2911.00100000010000000000
.........................................................................................................................ATGCACATAGAACCGCCCAGTTGG--G..........................................................................................................................................................2511.00100000010000000000
..........................................................................................................................................................................................................CTTCAGGGATTGTTAATTCAATTCGAA.........................................................................2711.00100000010000000000
..........................................................................................................................................................TAAAGCTAATTCAAGCCT-AAGCTC---------AA---.............................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................ACATCAAGTTCGTTACAGTCTACCTC.....................2611.00101000000000000000
.....................................................................................................................................................................................................................................................................AGTTCGTTACAGTCTACCTCAGCTCC...............2611.00100000000000100000
.................................................................................................................................................................................TC---------AA---CGCGTTCTTCTTCAGGGATTGT.......................................................................................2611.00100100000000000000
.......................................................................................................................................................................AGCCT-AAGCTC---------AA---CGCGTT.......................................................................................................1911.00100010000000000000
.................................ATGACATAAATCCAATTGAGCC.......................................................................................................................................................................................................................................................2211.00100000000010000000
....................................................................................................................................ACCGCCCAGTTGG--GACTTATTAAAGC..............................................................................................................................................2611.00100010000000000000
............................................................................................................................................................................................................................................................................TACAGTCTACCTCAGCTCCTA.............2111.00100000001000000000
............................................................................................................................................................................................AA---CGCGTTCTTCTTCAGGGATT.........................................................................................2211.00100010000000000000
droSec2
TTTCCCCATTCGGTGGTAGTTTTGTACGATGTGATGACATAAATCCAATTGAGCCAACTA-----TATTAGGACCTAATAAT---CATGGTT--------CTGGGGAAC---C---AGAAAATGCACATAGAACCGCCCAGTTGG--GACTTATTAAAGCTAATTCAAGCCT-AAGCTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CCAGTACATCAAGTTCGTTACAGTCTACCTCAGCTCCTATTTCGCCGAGCGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................AGCCT-AAGCTC---------AA---CGCGTT.......................................................................................................1913.0030030
.........................................AATCCAATTGAGCCAACTA-----TATT.........................................................................................................................................................................................................................................2312.0020020
............................................CCAATTGAGCCAACTA-----TAT..........................................................................................................................................................................................................................................1911.0010010
............................................................................................................................................................................................AA---CGCGTTCTTCTTCAGGGA...........................................................................................2011.0010100
TTTCCCCATTCGGTGGTAGTT.........................................................................................................................................................................................................................................................................................2111.0011000
...............GTAGTTTTGTACGATGTGATGACA.......................................................................................................................................................................................................................................................................2411.0010010
...............................................................................................................................ATAGAACCGCCCAGTTGG--GACTT......................................................................................................................................................2311.0011000
..........................................................................................................................................................................................................CTTCAGGGATTGTTAATT..................................................................................1811.0010010
.....................................................................................................................................................................CAAGCCT-AAGCTC---------AA---CGCGTT.......................................................................................................2111.0010100
................................................................................................................................................................................CTC---------AA---CGCGTTCTTCTTCAGGGATTGTT......................................................................................2811.0011000
.............................................................................ATAAT---CATGGTT--------CTGGGGAAC---C---..........................................................................................................................................................................................2211.0011000
...........GGTGGTAGTTTTGTACGATGTGA............................................................................................................................................................................................................................................................................2311.0011000
droYak3
TTTCCCCATTCGGTGGTAGCTTCGTAAGATGTGATGACATAGATCCAAATGAGTCAACTA-----TATTGGGAGGAAATAAT---CAATGCT--------CTGGGGAAC---C---AGAAAATGCCCATAAAACCACCCAGTTGG--GATTTGTTAAAGCTAATTCAGGCCT-AAGCTC---------TA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTCGAATTT------------------CTAGTGCAGCAAGTTCTTTACAATCTAATTCAGCACCTATTTCGCCAAGCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................GATGTGATGACATAGATCCAAATGAGT........................................................................................................................................................................................................................................................2713.00301000020000
................................GATGACATAGATCCAAATGAGT........................................................................................................................................................................................................................................................2212.00200000020000
..............GGTAGCTTCGTAAGATGTGAT...........................................................................................................................................................................................................................................................................2112.00200000020000
..........................................................................................................................................CAGTTGG--GATTTGTTAAAGCC.............................................................................................................................................2111.00110000000000
.................................................................................................................................................................................TC---------TA---CGCGTTCTTCTTCAGGGAT..........................................................................................2311.00100000010000
......................................................................................AATGCT--------CTGGGGAAC---C---AGAAAATGCCC...............................................................................................................................................................................2711.00100100000000
..................................................................................................................................................................................C---------TA---CGCGTTCTTCTTCAGGGATT.........................................................................................2311.00100100000000
..........................................................................................................................................................................................................................................................................................GCACCTATTTCGCCAAGCCT2011.00101000000000
...........GGTGGTAGCTTCGTAAGATGTGATGAC........................................................................................................................................................................................................................................................................2711.00101000000000
..............................GTGATGACATAGATCCAAATGAGT........................................................................................................................................................................................................................................................2411.00100000010000
.......................................TAGATCCAAATGAGTCAACTA-----TATTG........................................................................................................................................................................................................................................2611.00101000000000
...................................GACATAGATCCAAATGAGT........................................................................................................................................................................................................................................................1911.00100000010000
...............................................AATGAGTCAACTA-----TATTGGGA.....................................................................................................................................................................................................................................2111.00100000010000
.............................................................................................................................................................AGCTAATTCAGGCCT-AAGCTC---------TA---CGCGTT.......................................................................................................2911.00100000010000
......................................................CAACTA-----TATTGGGAGGAAATA..............................................................................................................................................................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................................ATCTAATTCAGCACCTATTT..........2011.00101000000000
......................................................................................................................................................TTGTTAAAGCTAATTCAGGCCT-.................................................................................................................................2211.00101000000000
...............GTAGCTTCGTAAGATGTGATG..........................................................................................................................................................................................................................................................................2111.00100000010000
..............GGTAGCTTCGTAAGATGC..............................................................................................................................................................................................................................................................................1811.00100100000000
....................................................GTCAACTA-----TATTGGGAGGAA.................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................AATGCCCATAAAACCACCCAGTTGG--GATT.......................................................................................................................................................2911.00100000000001
droEre2
TTTCCCCATTTGGTGGTAGTTTCGTAAGATGTGATGACATAAATCCAAATGAGTCAACTA-----TATTGCGACGAAGCAAT---CAAGGTT--------CTGGAGAAC---C---AGAAAATGCCCATAAAAACACCCAGTTGG--GTTTGGTTAAAGCTAATTCAAGCCT-AAGTTC---------AA---CGCGTTCTTCTTCAGGGATTGTTAATTCAATTAGAATTT------------------CCAGTACAGCAAGTTCATTACAATCTACTTCAGCACCTATTTCCCCGAGTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................AAT---CAAGGTT--------CTGGAGAAC---C---AGA.......................................................................................................................................................................................2311.0010100000
.........................................AATCCAAATGAGTCAACTA-----TATTGC.......................................................................................................................................................................................................................................2511.0010010000
..........................................................................................................................................CAGTTGG--GTTTGGTTAAAGCTAATT.........................................................................................................................................2511.0011000000
.........................................................................................................................................................................................................................................................................CATTACAATCTACTTCAGCACCT..............2311.0010100000
...............................................................................AAT---CAAGGTT--------CTGGAGAAC---..............................................................................................................................................................................................1911.0010000100
..............................GTGATGACATAAATCCAAATGAGTC.......................................................................................................................................................................................................................................................2511.0010100000
.................................................................................................................................................................AATTCAAGCCT-AAGTTC---------AA---CGCGTT.......................................................................................................2511.0010000100
................................................................................AT---CAAGGTT--------CTGGAGAAC---C---AGAA......................................................................................................................................................................................2311.0010000100
......................................ATAAATCCAAATGAGTCAACT...................................................................................................................................................................................................................................................2111.0010001000
........................................................................................................................................................................GCCT-AAGTTC---------AA---CGCGTT.......................................................................................................1811.0010000010
.......................................................................................................................................................................AGCCT-AAGTTC---------AA---CGCGT........................................................................................................1811.0010000010
...........GGTGGTAGTTTCGTAAGATGTGAT...........................................................................................................................................................................................................................................................................2411.0010000100
......................................................................................................................................................................AAGCCT-AAGTTC---------AA---CGCGTTCT.....................................................................................................2211.0010000100
.................................................................................................................................................................................TC---------AA---CGCGTTCTTCTTCAGGGATTGT.......................................................................................2611.0010000100
............GTGGTAGTTTCGTAAGATGTGAT...........................................................................................................................................................................................................................................................................2311.0010000100
...............................................................................................................................................................................GTTC---------AA---CGCGTTCTTCTTCAGGGATT.........................................................................................2611.0010100000
............................................................................................................................................................................................................................................................................TACAATCTACTTCAGCACCTATTTCCC.......2711.0011000000
....................................................................TGCGACGAAGCAAT---CAAGG....................................................................................................................................................................................................................1911.0011000000
.........................................................................................................................................................................................................................................................................CATTACAATCTACTTCAGC..................1911.0010001000
....................................................GTCAACTA-----TATTGCGACGAAGCA..............................................................................................................................................................................................................................2311.0011000000
.........TTGGTGGTAGTTTCGTAAGATGT..............................................................................................................................................................................................................................................................................2311.0010000100

Generated: 06/08/2015 at 04:41 PM