dpe_1806

Name	Class	Family	Strand
BEL3-LTR_Dpse	LTR	Pao	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGCGTCTGCGCATTCCACAACTCGCCTTCTTGGGCTTACTCTTAGCACAGGTGGGCTCCTGAAACATTCTTTAACCTGTCATTTCTTTAAAATGTCATCTTAGACATTTTTCATAAAACCTGTACGAGCTAAGTCCCTTCAACAGTTTTCCAGTGGAATCCGTCTACCCAATTAAGACCTTCCTTAATCCGCTCGATGTAGTTCCTTGCTCATTCGTTTTATTTTGTATATCTCTTAAATCTAGTGATCAT *****************************************************************************************************************************************.........((.((((((..............(((((......))))))))))).))..***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	M021 embryo	V042 embryo
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTC.......................................................................................	25	0	20	4.75	95	85	9	0	1
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCTA.....................................................................................	27	0	20	0.40	8	8	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCG.........................................................................................	23	0	20	0.40	8	3	5	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGT........................................................................................	24	0	20	0.30	6	4	1	1	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGATG.....................................................	26	0	20	0.25	5	5	0	0	0
............................................................................................................................................AACAGTTTTCCAGTGGAATCCGTC.......................................................................................	24	0	20	0.20	4	4	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCT......................................................................................	26	0	20	0.15	3	0	2	1	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTC.........................................................	22	0	20	0.15	3	2	1	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGAT......................................................	25	0	20	0.10	2	2	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCTAC....................................................................................	28	0	20	0.10	2	2	0	0	0
.............................................................................................................................................ACAGTTTTCCAGTGGAATCCGTCTAC....................................................................................	26	0	20	0.05	1	1	0	0	0
.........................................................................................................................................................................AATTAAGAGCTTCCTTAATCCGCTCGA.......................................................	27	1	20	0.05	1	1	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCG........................................................	23	0	20	0.05	1	0	1	0	0
........................................................................................................................................................................CAATTAAGACCTTCCTTAATCCGCTCG........................................................	27	0	20	0.05	1	1	0	0	0
........................................................................................................................................................................CAATTAAGACCTTCCTTAATCCGCTCGA.......................................................	28	0	20	0.05	1	1	0	0	0
...........................................................................................................................................CAACAGTTGTCCAGTGGAATCCGT........................................................................................	24	1	20	0.05	1	1	0	0	0
...............................................................................................................................................................................GACCTTCCTTAATCCGCTCGATGTAGT.................................................	27	0	20	0.05	1	1	0	0	0
............................................................................................................................................AACAGTTTTCCAGTGGAATCCGT........................................................................................	23	0	20	0.05	1	1	0	0	0
.............................................................................................................................................ACAGTTTTCCAGTGGAATCCGTC.......................................................................................	23	0	20	0.05	1	1	0	0	0
...........................................................................................................................................GAACAGTTTTCCAGTGGAATCCGTC.......................................................................................	25	1	20	0.05	1	1	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGC..........................................	25	0	20	0.05	1	0	1	0	0
..................................................................................................................................................................................CTTCCTTAATCCGCTCGATGTAGTTC...............................................	26	0	20	0.05	1	1	0	0	0
...........................................................................................................................................CAACAGTTGTCCAGTGGAATCCGTCT......................................................................................	26	1	20	0.05	1	1	0	0	0
..................................................................................................................................................................................CTTCCTTAGTCCGCTCGATGTAG..................................................	23	1	20	0.05	1	1	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGA.......................................................	24	0	20	0.05	1	0	1	0	0
................ACAACACGCCTTCTCGCGCT.......................................................................................................................................................................................................................	20	3	20	0.05	1	1	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGCT.........................................	26	0	20	0.05	1	1	0	0	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGTTCCT.............................................	25	0	20	0.05	1	1	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCTTGC..........................................	24	0	20	0.05	1	1	0	0	0
...........................................................................................................................................CAACAGTTATCCAGTGGAATCCGTC.......................................................................................	25	1	20	0.05	1	1	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGATC.....................................................	26	1	20	0.05	1	0	1	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGAC.......................................................................................	25	1	20	0.05	1	1	0	0	0

ACGCAGACGCGTAAGGTGTTGAGCGGAAGAACCCGAATGAGAATCGTGTCCACCCGAGGACTTTGTAAGAAATTGGACAGTAAAGAAATTTTACAGTAGAATCTGTAAAAAGTATTTTGGACATGCTCGATTCAGGGAAGTTGTCAAAAGGTCACCTTAGGCAGATGGGTTAATTCTGGAAGGAATTAGGCGAGCTACATCAAGGAACGAGTAAGCAAAATAAAACATATAGAGAATTTAGATCACTAGTA ***************************************************.........((.((((((..............(((((......))))))))))).))..*****************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V042 embryo	M021 embryo
..............................................................................................................AGTATTTTGACTATGCTCGA.........................................................................................................................	20	3	19	0.95	18	7	2	6	3
......................................................................................................................................................................................GAATTAGGCGAGCTACATCAAGGAA............................................	25	0	20	0.15	3	3	0	0	0
...............................................................................................................................CGATTCAGGGAAGTTGTCAAAA......................................................................................................	22	0	18	0.11	2	0	2	0	0
........................................................................................................................................................................................ATTAGGCGAGCTACATCAAGGAA............................................	23	0	20	0.10	2	2	0	0	0
......................................................................................................................................................................................GAATTAGGCGAGCTACATCAAGGA.............................................	24	0	20	0.10	2	2	0	0	0
....................................................................................................................................................................................AGGAATTAGGCGAGCTACATCAAGGA.............................................	26	0	20	0.10	2	0	2	0	0
...............................CCCGAATGAGAATCGTGTCCAC......................................................................................................................................................................................................	22	0	15	0.07	1	0	1	0	0
...................TGAGCGGAAGAACCCGAATGAGAAT...............................................................................................................................................................................................................	25	0	16	0.06	1	0	1	0	0
.....................................................................................................................................................GGTCACCTTAGGCAGATGGGT.................................................................................	21	0	20	0.05	1	1	0	0	0
...................................................................................................................................................................................AACGAATTAGGCGAGGTACATCAA................................................	24	2	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_504:3200-3450 +	dpe_1806	TGCGTCTGCGCATTCCACAACTCGCCTTCTTGGGCTTACTCTTAGCACAGGTGGGCTCCTGAAACATTCTTTAACCTGTCATTTCTTTAAAATGTCATCTTAGACATTTTTCATAAAACCTGTACGAGCTAAGTCCCTTCAACAGTTTTCCAGTGGAATCCGTCTACCCAATTAAGACCTTCCTTAATCCGCTCGATGTAGTTCCTTGCTCATTCGTTTTATTTTGTATATCTCTTAAATCTAGTGATCAT
dp5	Unknown_singleton_165:2042-2198 +		T----------------------------------------------------------------------------------------------CATCTAAGACATTTTTCATAAAACCTGTACGAGCTAAGTCCCTTCAACAGTTTTCCAGTGGAATCCGTCTACCCAATTAAGACCTTCCTTAATCCGCTCGATGTAGTTCCTTGCTCATTCGTTTTATTTCGTATATCTCTTAAATCTAGTGATCAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TGCGTCTGCGCATTCCACAACTCGCCTTCTTGGGCTTACTCTTAGCACAGGTGGGCTCCTGAAACATTCTTTAACCTGTCATTTCTTTAAAATGTCATCTTAGACATTTTTCATAAAACCTGTACGAGCTAAGTCCCTTCAACAGTTTTCCAGTGGAATCCGTCTACCCAATTAAGACCTTCCTTAATCCGCTCGATGTAGTTCCTTGCTCATTCGTTTTATTTTGTATATCTCTTAAATCTAGTGATCAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTC.......................................................................................	25	20	4.75	95	0	85	1	0	0	9
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCTA.....................................................................................	27	20	0.40	8	0	8	0	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCG.........................................................................................	23	20	0.40	8	0	3	0	0	0	5
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGT........................................................................................	24	20	0.30	6	1	4	0	0	0	1
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGATG.....................................................	26	20	0.25	5	0	5	0	0	0	0
............................................................................................................................................AACAGTTTTCCAGTGGAATCCGTC.......................................................................................	24	20	0.20	4	0	4	0	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCT......................................................................................	26	20	0.15	3	1	0	0	0	0	2
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTC.........................................................	22	20	0.15	3	0	2	0	0	0	1
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGAT......................................................	25	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCTAC....................................................................................	28	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................ACAGTTTTCCAGTGGAATCCGTCTAC....................................................................................	26	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCG........................................................	23	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................CAATTAAGACCTTCCTTAATCCGCTCG........................................................	27	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................CAATTAAGACCTTCCTTAATCCGCTCGA.......................................................	28	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................GACCTTCCTTAATCCGCTCGATGTAGT.................................................	27	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................AACAGTTTTCCAGTGGAATCCGT........................................................................................	23	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................ACAGTTTTCCAGTGGAATCCGTC.......................................................................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGC..........................................	25	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................CTTCCTTAATCCGCTCGATGTAGTTC...............................................	26	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGA.......................................................	24	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGCT.........................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGTTCCT.............................................	25	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCTTGC..........................................	24	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGATC.....................................................	26	20	0.05	1	0	0	0	0	0	1

dp5

T----------------------------------------------------------------------------------------------CATCTAAGACATTTTTCATAAAACCTGTACGAGCTAAGTCCCTTCAACAGTTTTCCAGTGGAATCCGTCTACCCAATTAAGACCTTCCTTAATCCGCTCGATGTAGTTCCTTGCTCATTCGTTTTATTTCGTATATCTCTTAAATCTAGTGATCAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGC..........................................	25	20	13.15	263	0	222	14	0	1	1	6	17	2	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTG...........................................	24	20	5.70	114	0	105	0	0	1	0	1	4	3	0
....................................................................................................................................................................................................TGTAGTTCCTTGCTCATTCGTTT................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTCCT.............................................	26	20	2.15	43	0	43	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTTGCTCA.......................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGATG.....................................................	26	8	1.63	13	0	12	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCTTGC..........................................	24	20	1.45	29	0	29	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGCT.........................................	26	20	1.40	28	0	28	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTCC..............................................	25	20	1.10	22	0	20	1	0	1	0	0	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTC.......................................................................................	25	14	1.00	14	0	1	0	0	0	0	0	12	1	0
....................................................................................................................................................................................................TGTAGTTCCTTGCTCATTCGT..................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTTGCTC........................................	24	20	1.00	20	0	19	1	0	0	0	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGA.......................................................	24	8	1.00	8	0	6	0	0	0	0	0	2	0	0
.........................................................................................................................................................TGGAATCCGTCTACCCAATTAAGACCT.......................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TATTTCGTATATCTCTTAAATCTAG.......	25	3	1.00	3	0	0	0	0	0	0	0	0	3	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTT............................................	23	20	1.00	20	0	18	0	0	0	0	0	0	2	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCT.............................................	22	20	0.85	17	0	15	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCTTG...........................................	23	20	0.75	15	0	15	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCG........................................................	23	8	0.75	6	0	6	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TATTTCGTATATCTCTTAAATCTAGT......	26	3	0.67	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTTGC..........................................	22	20	0.60	12	0	10	1	0	1	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGCTC........................................	27	20	0.50	10	0	4	4	0	0	0	0	2	0	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTTGCT.........................................	23	20	0.50	10	0	9	0	0	1	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTC...............................................	24	20	0.50	10	0	10	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCTTG...........................................	25	20	0.50	10	0	10	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGTTC...............................................	25	20	0.50	10	0	10	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGTTCC..............................................	26	20	0.45	9	0	8	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TATATCTCTTAAATCTAGTGATCA.	24	7	0.43	3	0	0	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCTTGC..........................................	26	20	0.40	8	0	7	1	0	0	0	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATC..............................................................	17	8	0.38	3	0	0	0	0	0	0	0	0	3	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTCCTTG...........................................	28	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCTA.....................................................................................	27	12	0.33	4	0	0	0	0	0	0	0	4	0	0
...........................................................................................................................................................................TTAAGACCTTCCTTAATCCGCTCGATG.....................................................	27	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TATATCTCTTAAATCTAGTGA....	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTCGTATATCTCTTAAATCT.........	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGTTC...............................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGTTCCTT............................................	28	20	0.20	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTCCTTGC..........................................	29	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATATCTCTTAAATCTAGTGATCA.	23	11	0.18	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................TCCAGTGGAATCCGTCTAC....................................................................................	19	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCTT............................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGTTCC..............................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCGCTCGATGTAGTTCCTTG...........................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAG..................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CCGCTCGATGTAGTTCCTTGCTC........................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTTG...........................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGT..........................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAG..................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CGCTCGATGTAGTTCCTTG...........................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTTGCTA........................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCTTGCT.........................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GACCTTCCTTAATCCGCTCGATG.....................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCT.............................................	21	20	0.15	3	0	2	1	0	0	0	0	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAAT............................................................................................	20	14	0.14	2	0	0	0	0	0	0	0	2	0	0
..............................................................................................................................................CAGTTTTCCAGTGGAATCC..........................................................................................	19	14	0.14	2	0	1	0	1	0	0	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGAT......................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTC.........................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAGACCTTCCTTAATCCGCTCGAA......................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAATTAAGACCTTCCTTAATCCGCTCGA.......................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AAGACCTTCCTTAATCCGC...........................................................	19	9	0.11	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................AAGACCTTCCTTAATCCGCTCGATG.....................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTT................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTCCC.............................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGCC.........................................	26	20	0.10	2	0	1	1	0	0	0	0	0	0	0
................................................................................................................................................................................ACCTTCCTTAATCCGCTCGATGTAG..................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTCCTT............................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTC...............................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCGCTCGATGTAGTTC...............................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCCTTGCA.........................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CCGCTCGATGTAGTTCCTTGCT.........................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGTTCCT.............................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCGCTCGATGTAGTTCCTTGC..........................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCTTGCT.........................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATCTCTTAAATCTAGTGA....	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTTCCAGTGGAATCCGTCTAC....................................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTTCCAGTGGAATCCGTCTA.....................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TTCCAGTGGAATCCGTCTA.....................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCG.........................................................................................	23	14	0.07	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCA......................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGTCT......................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................CAACAGTTTTCCAGTGGAATCCGT........................................................................................	24	14	0.07	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................ACAGTTTTCCAGTGGAATCCGTC.......................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CTTCCTTAATCCGCTCGATGTA...................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGTTCCTCA...........................................	28	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCCTTGCTC........................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTCC..............................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCA.............................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTTGCTT........................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTT................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCC..............................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATG.....................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCTTGCTC........................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CTTCCTTAATCCGCTCGATGTAGTTCCT.............................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGT.................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATGTAGAA................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................TCCTTAATCCGCTCGATG.....................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CTTAATCCGCTCGATGTAGTTCC..............................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAATCCGCTCGATGTAGTTCC..............................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGT.................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTT................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGTTCCTTGC..........................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCTTGCTT........................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTT................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGT....................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCGCTCGATGTAGTTCCTT............................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGTTAAG.............................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGT.................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CTTAATCCGCTCGATGTAGTTCCT.............................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCTT............................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CCGCTCGATGTAGTTCCTTG...........................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCGCTCGATGTAGTTCCT.............................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGTT................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGTTCCA.............................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGTTCCTTGCG.........................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CCTTAATCCGCTCGATGTAGTTCCT.............................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTA...................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGATGTAGTTCCTTGCTC........................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCCTTAATCCGCTCGATGTAGTTCAAA............................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AATCCGCTCGATGTAGTTC...............................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTAATCCGCTCGATGTAGA.................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

dpe_1806

scaffold_504:3250-3400 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.2	-7.1	-6.9