dpe_178

####################################################################################################################################################################################### TACTTCCAGCAGACGCAGACGGGCCACACCCAGCCGCTGCTGGACGAGGGCTCCAGCTCGGGGTCCAGCCAGCCGCCCAGCTCCGGCTATCGGGGCTCTTCCACGCTGCTAACCGACTCCGAGCTGGACGCCGATGCGGATCCGCTCAAGCAAATGTATGTCTACCAGTACGATCAGCAGCAG *********************************...((.(((((..(((((((((((((((((.(((.(((.....(((((((.....))))))).......))))))....)))))))))))))).)))....))..)))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	M042 female body
...........................................................................................................GCTAACCGACTCCGAGCTGGACGCC...................................................	25	0	1	5.00	5	5	0
..............................................................................................................AACCGACTCCGAGCTGGACGCC...................................................	22	0	1	2.00	2	2	0
..............................................................................................................AACCGACTCCGAGCTGGACGCCGATGC..............................................	27	0	1	2.00	2	2	0
.............................................................................................................TAACCGACTCCGAGCTGGACG.....................................................	21	0	1	2.00	2	2	0
.................................................................................................................CGACTCCGAGCTGGACGCC...................................................	19	0	1	1.00	1	1	0
............................................................................................................CTAACCGACTCCGAGCTGGACGC....................................................	23	0	1	1.00	1	1	0
...........GACGCAGACGGGCCACACCCAGCC....................................................................................................................................................	24	0	1	1.00	1	0	1
...................................GCTGCTGGACGAGGGCTCCAGCTCGGG.........................................................................................................................	27	0	1	1.00	1	0	1
.................GACGGGCCACACCCAGCCGCT.................................................................................................................................................	21	0	1	1.00	1	0	1
.............................................................................................................TAACCGACTCCGAGCTGGACGCC...................................................	23	0	1	1.00	1	1	0
..............................................................................................................AACCGACTCCGAGCTGGACGC....................................................	21	0	1	1.00	1	1	0
.......................................................................................................................................................AAATGTATGTCTACCAGTACGATCAGC.....	27	0	1	1.00	1	0	1
..................................................................................................................GACTCCGAGCTGGACGCCGATGC..............................................	23	0	1	1.00	1	0	1
...................................................................................................................................................AAGCAAATGTATGTCTACCAGTACGAT.........	27	0	1	1.00	1	0	1
.................................................................................................CTTCCTTGCTGCTAACTGAC..................................................................	20	3	20	0.05	1	0	1

ATGAAGGTCGTCTGCGTCTGCCCGGTGTGGGTCGGCGACGACCTGCTCCCGAGGTCGAGCCCCAGGTCGGTCGGCGGGTCGAGGCCGATAGCCCCGAGAAGGTGCGACGATTGGCTGAGGCTCGACCTGCGGCTACGCCTAGGCGAGTTCGTTTACATACAGATGGTCATGCTAGTCGTCGTC *********************************...((.(((((..(((((((((((((((((.(((.(((.....(((((((.....))))))).......))))))....)))))))))))))).)))....))..)))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head
...............................................CCCGAGGTAGAGCCCCAC......................................................................................................................	18	2	3	0.33	1	1
..................TGCCCGATGTGGGTCGTC...................................................................................................................................................	18	2	5	0.20	1	1
..........................................................................CGGGTTGCGGCCGATAGCCG.........................................................................................	20	3	10	0.10	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_0:36087-36269 -	dpe_178	TACTTCCAGCAGACGCAGACGGGC------------CACACCCAGCCGCTGCTGGACGAGGGCTCCAGCTCGGGGTCCAGCCAGCCGCCCAGCTCCGGCTATCGGGGCTCTTCCACGCTGCTAACCGACTCCGAGCTGGACGCCGATGCGGATCCGCTCAAGCAAATGTATGTCTACCAGTACGATCAGCAG---CAG---------------------------------
dp5	2:6210208-6210387 -		TACTTCCAGCAGACGCAGACGGGC------------CACACCCAGCCGCTGCTGGACGAGGGCTCCAGCTCGGGGTCCAGCCAGCCGCCCAGCTCCGGCTATCGGGGCTCTTCCACGCTGCTAACCGACTCCGAGCTGGACGCCGATGCGGATCCACTGAAGCAAATGTATGTCTACCAGTACGATCAGCAG---------------------------------------
droWil2	scf2_1100000004902:1417600-1417786 -		TACTTCCAGCAGACGCCTGGCCAA---------GGGG---AGCAAACGCAGCTGGATGAAGGTTCTAGTTCGGGATCAAGTCAACAGCCAAGCTCAGGCTATCGCGGCTCATCAACGCTGCTCACCGATTCCGAATTGGAT------GCTGATCCCTTGAAGCAAATGTATGTCTATCAGTATGATCAGCAACAGCGTATGGATT--------------------------
droVir3	scaffold_12822:394816-394998 -		AACTTGCAGCAGAA---------T------------CAAGCCCAGACGCAGTTGGATGATGCGTCCAGTTCGGGCTCTAGTCAGCCGCCTAGCTCTGGCTACCGCGGCTCCTCCACGCTGCTCACCGACTCTGAGGTGGAC------GCTGATCCTCTAAAGCAGATGTACGTCTATCAATATGAGCAGCAG---CGCATGGACTCAGGCATG------------------
droMoj3	scaffold_6540:33021455-33021643 -		AGCTTGCA---------------------------------GCAGACGCAGCTGGACGAGGCCTCCAGCTCGGGCTCTAGTCAGCCGCCCAGCTCCGGGTATCGCGGCTCGTCGACGCTGCTCACCGACTCGGAGGTCGAT------GCGGATCCCATGAAGCAGATGTATGTCTACCAGTACGAGCAGCAG---CGCATGGACTCGGGCGCGGAGACGAGTCCTGCCAGC
droGri2	scaffold_15074:3413244-3413423 +		ACCTTGCAGCTGCAACAGCAACAG---------CAGC---AGCAGACACAAATGGATGAGGCATCCAGTTCGGGCTCCAGTCAACCGCCCAGCTCCGGCTATCGTGGCTCGTCCACGCTGCTGACCGACTCAGAGGCGGATGCC---GCCGATCCCCTGAAACAGATGTATGTCTATCAGTATGAACAGCAG---CGC---------------------------------
droAna3	scaffold_13340:12701036-12701214 -		TACTTCCAG---------------------------------------CAGACAGACGAGGCCTCCAGTTCCGGATCGAGTCAGCAGCCCAGCTCAGGGTATCGAGGGTCATCCACTCTCCTCACGGACTCCGAGTTGGAC------GCCGATCCACTGAAGCAGATGTATGTGTACCAGTACGATCAACAG---CGCATGGATTCGGGCGTGGAAACGAGTCCAAG----
droBip1	scf7180000396691:1587708-1587886 -		TACTTCCAG---------------------------------------CAGACAGACGAAGCCTCCAGTTCCGGATCGAGTCAGCAGCCCAGCTCCGGTTATCGCGGGTCATCCACTCTCCTCACGGACTCCGAGTTGGAC------GCAGATCCTCTGAAGCAGATGTACGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAACAAGCCCGAG----
droKik1	scf7180000302697:1179466-1179653 +		TACTTCCAG------------------------GG------ACAGACCCAGATGGACGAGGCCTCCAGTTCGGGATCGAGTCAGCAGCCCAGCTCTGGCTATCGCGGCTCGTCCACACTGCTGACCGACTCCGAGTTGGAT------ACGGATCCGCTGAAGCAGATGTATGTGTACCAATATGATCAGCAG---CGCATGGACTCTGGTGTGGAGACGAGTCCCGG----
droFic1	scf7180000454055:202809-202996 -		TACTTCCAG------------------------GGACAGCAGCAGACCCAGATGGACGAGGCCTCCAGCTCGGGATCCAGCCAGCAGCCCAGCTCCGGCTATCGTGGCTCGTCCACGCTGCTCACCGACTCCGAGCTGGAT------GTGGATCCGCTCAAGCAGATGTACGTGTACCAGTACGATCAGCAG---CGTATGGATTCCGGCGTGGAGACGAG----------
droEle1	scf7180000491017:315883-316094 +		TACTTCCAGGAGCAGGG------TCAGGGCCAAGGGCAGGGGCAGACCCAAATGGACGAGGCCTCCAGCTCGGGTTCGAGTCAGCCGCCCAGCTCCGGCTACCGTGGCTCGTCCACGCTGCTCACCGACTCCGAGCTGGAT------GTTGATCCGCTGAAGCAGATGTACGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAACGAGTCCCGG----
droRho1	scf7180000779414:74382-74556 -		TTCTTCCAG------------------------GGGC---AGCAGACCCAAATGGACGAGGCCTCCAGCTCGGGATCGAGTCAGCAGCCCAGCTCTGGCTATCGTGGCTCATCCACGCTGCTCACCGACTCCGAGTTGGAT------GTGGATCCGCTCAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGATTCTGGCG--------------------
droBia1	scf7180000302402:5093098-5093285 -		TACTTCCAG------------------------GGAC---AGCAGACTCAGATGGATGAGGCCTCTAGTTCGGGATCCAGTCAGCCGCCCAGCTCTGGCTATCGCGGCTCATCCACGCTGCTAACCGACTCCGAGCTGGAT------GTGGATCCGCTGAAGCAGATGTATGTGTATCAGTACGACCAGCAG---CGCATGGACTCGGGCGTGGAAACGAGTCC-------
droTak1	scf7180000415417:33280-33441 -		TACTTCCAG------------------------GGGC---AGCAGACTCTGATGGATGAGGCCTCCAGCTCGGGATCCAGTCAACAGCCCAGTTCCGGCTATCGTGGCTCCTCCACGCTGCTCACCGACTCCGAGTTGGAT------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACCAGGACCAA---CAG---------------------------------
droEug1	scf7180000409768:762705-762886 +		TACTTCCAG------------------------GGAC---AGCAAACGCAAATGGACGAGGCCTCCAGCTCGGGATCCAGTCAGCAGCCCAGCTCTGGCTATCGTGGTTCATCCACGCTGCTCACCGACTCAGAGTTGGAT------GTGGATCCACTGAAGCAAATGTATGTCTATCAATACGATCAGCAG---CGCATGGATTCGGGTGTGGAAAC-------------
dm3	chr3R:18616770-18616951 +		TACTTCCAG------------------------GGCC---AGCAGACCCAAACGGACGAGGCATCCAGCTCGGGATCCAGTCAACAGCCCAGCTCCGGTTATCGTGGCTCATCAACGCTGCTCACCGACTCCGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGACTCGGGCGTGGAAAC-------------
droSim2	3r:18141490-18141671 +		TACTTCCAG------------------------GGCC---AGCAGACCCAAATGGACGAGGCATCCAGCTCGGGATCCAGTCAGCAGCCCAGCTCCGGTTATCGTGGCTCATCCACGCTGCTCACCGACTCTGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAAC-------------
droSec2	scaffold_0:18977519-18977680 +		TACTTCCAG------------------------GGCC---AGCAGACCCAAATGGACGAGGCATCCAGCTCGGGATCCAGTCAGCAGCCCAGCTCCGGTTATCGTGGCTCATCCACGCTGCTCACCGACTCTGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGC---------------------------------
droYak3	3R:19468154-19468335 +		TACTTCCAG------------------------GGCC---AGCAGACCCACATGGACGAGGCATCCAGCTCGGGATCCAGTCAGCCGCCCAGCTCCGGCTATCGCGGCTCATCCACGCTGCTTACCGACTCGGAGTTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAAC-------------
droEre2	scaffold_4820:9456379-9456560 -		TACTTCCAG------------------------GGCC---AGCAGACCCAAATGGACGAGGCATCCAGCTCGGGTTCCAGTCAACAGCCCAGTTCCGGCTACCGCGGCTCATCCACGCTGCTTACCGACTCTGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGACTCGGGCGTGGAAAC-------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TACTTCCAGCAGACGCAGACGGGC------------CACACCCAGCCGCTGCTGGACGAGGGCTCCAGCTCGGGGTCCAGCCAGCCGCCCAGCTCCGGCTATCGGGGCTCTTCCACGCTGCTAACCGACTCCGAGCTGGACGCCGATGCGGATCCGCTCAAGCAAATGTATGTCTACCAGTACGATCAGCAG---CAG---------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................GCTAACCGACTCCGAGCTGGACGCC.......................................................................................	25	1	5.00	5	5	0	0	0	0	0
..........................................................................................................................AACCGACTCCGAGCTGGACGCC.......................................................................................	22	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................AACCGACTCCGAGCTGGACGCCGATGC..................................................................................	27	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................TAACCGACTCCGAGCTGGACG.........................................................................................	21	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................CGACTCCGAGCTGGACGCC.......................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................CTAACCGACTCCGAGCTGGACGC........................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........GACGCAGACGGGC------------CACACCCAGCC........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................................GCTGCTGGACGAGGGCTCCAGCTCGGG.............................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................GACGGGC------------CACACCCAGCCGCT.....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................TAACCGACTCCGAGCTGGACGCC.......................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................AACCGACTCCGAGCTGGACGC........................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................AAATGTATGTCTACCAGTACGATCAGC.........................................	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................GACTCCGAGCTGGACGCCGATGC..................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................AAGCAAATGTATGTCTACCAGTACGAT.............................................	27	1	1.00	1	0	1	0	0	0	0

dp5

TACTTCCAGCAGACGCAGACGGGC------------CACACCCAGCCGCTGCTGGACGAGGGCTCCAGCTCGGGGTCCAGCCAGCCGCCCAGCTCCGGCTATCGGGGCTCTTCCACGCTGCTAACCGACTCCGAGCTGGACGCCGATGCGGATCCACTGAAGCAAATGTATGTCTACCAGTACGATCAGCAG---------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................GGACGAGGGCTCCAGCTCGG..............................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................GACTCCGAGCTGGACGCCGATG...................................................................................	22	1	2.00	2	0	1	0	0	0	1	0	0	0	0
...........................................................................................................................ACCGACTCCGAGCTGGACG.........................................................................................	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0
......................................................GACGAGGGCTCCAGCTCGG..............................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................CGGCTATCGGGGCTCTTCCACGC.................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................CGATGCGGATCCACTGAAGCA...................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................GCTCCAGCTCGGGGTCCAGC......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................ACCGACTCCGAGCTGGACGCC.......................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........GACGCAGACGGGC------------CACACCCAGCC........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CTCCGAGCTGGACGCCGATGCGG................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................CAGCTCGGGGTCCAGCCAGCCGCCCAG...........................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................GAGCTGGACGCCGATGCGGATC.............................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................CCGAGCTGGACGCCGATGCGGAT..............................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................GCTGCTAACCGACTCCGAGCTG.............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................CGGCTATCGGGGCTCTTCCAC...................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TCCGGCTATCGGGGCTCTTCCACG..................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................CACGCTGCTAACCGACTCCGAGCT..............................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................CGCCGATGCGGATCCACTGAA......................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................GGTCCAGCCAGCCGCCCA............................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................GGGCTCCAGCTCGGGGTCCAGC......................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................CTCCGGCTATCGGGGCTCTTCCACGCTGC..............................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................GGACGCCGATGCGGATCCACTGAAGCA...................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................ACCCAGCCGCTGCTGGACGAGGGC........................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GGCTATCGGGGCTCTTCCACGCTGCT.............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................AATGTATGTCTACCAGTACGATCAGC.........................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

TACTTCCAGCAGACGCCTGGCCAA---------GGGG---AGCAAACGCAGCTGGATGAAGGTTCTAGTTCGGGATCAAGTCAACAGCCAAGCTCAGGCTATCGCGGCTCATCAACGCTGCTCACCGATTCCGAATTGGAT------GCTGATCCCTTGAAGCAAATGTATGTCTATCAGTATGATCAGCAACAGCGTATGGATT--------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................GAATTGGAT------GCTGATCCCT..........................................................................	19	1	2.00	2	2	0	0	0	0
........GCAGACGCCTGGCCAA---------GGGG---A..............................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
......................................................GATGAAGGTTCTAGTTCGGGAT...........................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
.........................................................................................AAGCTCAGGCTATCGCGGCC..........................................................................................................................	20	1	1.00	1	1	0	0	0	0
...........GACGCCTGGCCAA---------GGGG---AGC............................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................AAACGCAGCTGGATGAAGGT........................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......AGCAGACGCCTGGCCAA---------GGG...................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................ATGTCTATCAGTATGATCAG..........................................	20	1	1.00	1	0	0	0	1	0
......................................................................................GCCAAGCTCAGGCTATCGCGGCC..........................................................................................................................	23	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................GTATGATCAGCAACAGCGTATGGATT--------------------------	26	1	1.00	1	0	0	1	0	0
...................GCCAA---------GGGG---AGCAAACGCAGCTGGATG.............................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
....................................................TGGATGAAGGTTCTAGTTCGGGATCAAGT......................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
.....................................................GGATGAAGGTTCTAGTTCGG..............................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................................................................................AAGCTCAGGCTATCGCGGCG..........................................................................................................................	20	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................AATGTATGTCTATCAGTATGATC............................................	23	1	1.00	1	1	0	0	0	0
..................GGCCAA---------GGGG---AGCAAACGCAGCTG.................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................CAA---------GGGG---AGCAAACGCAGCT..................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..................................................GCTGGATGAAGGTTCTAGTTCGG..............................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........................................AAACGCAGCTGGATGAAGGTTCT.....................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
................................................................................................GGCTATCGCGGCTCATCAAC...................................................................................................................	20	1	1.00	1	0	1	0	0	0
..........AGACGCCTGGCCAA---------GGGG---...............................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................TGTCTATCAGTATGATCAGCAACAGCGTA................................	29	1	1.00	1	0	0	1	0	0
......CAGCAGACGCCTGGCCAA---------GGGG---A..............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.........................................................................................AAGCTCAGGCTATCGCGGCT..........................................................................................................................	20	1	1.00	1	1	0	0	0	0
...........................................AAACGCAGCTGGATGAAG..........................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................TGTATGTCTATCAGTATGATCAGCA........................................	25	1	1.00	1	0	0	0	1	0
.....................................................................................AGCCAAGCTCAGGCTATCGCGGCTCAT.......................................................................................................................	27	1	1.00	1	0	1	0	0	0
.............................................................GTTCTAGTTCGGGATCAAGT......................................................................................................................................................	20	1	1.00	1	0	0	0	1	0

droVir3

AACTTGCAGCAGAA---------T------------CAAGCCCAGACGCAGTTGGATGATGCGTCCAGTTCGGGCTCTAGTCAGCCGCCTAGCTCTGGCTACCGCGGCTCCTCCACGCTGCTCACCGACTCTGAGGTGGAC------GCTGATCCTCTAAAGCAGATGTACGTCTATCAATATGAGCAGCAG---CGCATGGACTCAGGCATG------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................CCGACTCTGAGGTGGAC------GCTGAT..............................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
..................................................................................................................................CTGAGGTGGAC------GCTGATCCTC..........................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................C------GCTGATCCTCTAAAGCAGAT................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GCTCACCGACTCTGAGGT..............................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTTGGATGATGCGTCCAGTTCGGGCTC..........................................................................................................................................................	27	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CTGAGGTGGAC------GCTGATCCT...........................................................................	20	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GACTCTGAGGTGGAC------GCTGATCCT...........................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CCAGACGCAGTTGGATGATGCG........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................GACGCAGTTGGATGATGC.........................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GATGATGCGTCCAGTTCGGGCT...........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................AGCCCAGACGCAGTTGGATG.............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGTACGTCTATCAATATGAGC............................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCAATATGAGCAGCAG---CGCAT...............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AGCTCTGGCTACCGCGGCTCCTCCACGCT................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CAG---CGCATGGACTCAGGC.....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ATGATGCGTCCAGTTCGGG.............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TGATGCGTCCAGTTCGGGC............................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TCCACGCTGCTCACCGACTCTGAGGT..............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCCAGTTCGGGCTCTAGTC.....................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACTTGCAGCAGAA---------T------------CAAGCCCAGA.........................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CGCAGTTGGATGATGCGTCCAG...................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ATGATGCGTCCAGTTCGGGCT...........................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CCTCTAAAGCAGATGTACGT..........................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCTGAGGTGGAC------GCTGATCCT...........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGTTGGATGATGCGTCCAGTT.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................CGCGGCTCCTCCACGCTGCTCACC.........................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GCTCACCGACTCTGAGGTGGAC------GCT.................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CGCAGTTGGATGATGCGTCCA....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GAC------GCTGATCCTCTAAAGC....................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CAATATGAGCAGCAG---CGCATG..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................CGCGGCTCCTCCACGCTGCTCAC..........................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAGTTCGGGCTCTAGTCAGCCGC...............................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACTCTGAGGTGGAC------GCTGATC.............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGTTGGATGATGCGTCCAGTTCGGGC............................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CCAGTTCGGGCTCTAGTC.....................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CTGAGGTGGAC------GCTGATCCTCTAAAGCA...................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CCCAGACGCAGTTGGATGATGCG........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................AGTTCGGGCTCTAGTCAGCCGCC..............................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGTTGGATGATGCGTCCA....................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGCAGCAGAA---------T------------CAAGCCCAGACGCA.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AC------GCTGATCCTCTAAAGCAGA.................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGACGCAGTTGGATGATGCG........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAG---CGCATGGACTCAGGC.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................TGATCCTCTAAAGCAGATGTACGT..........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TCACCGACTCTGAGGTGGA...........................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CACCGACTCTGAGGTGGAC------GCTGATCCT...........................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................ATGATGCGTCCAGTTCGGGCTT..........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................T------------CAAGCCCAGACGCAGTTG.................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAAGCCCAGACGCAGTTGGAT..............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................CCAGACGCAGTTGGATGAT...........................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCTTGCA---------------------------------GCAGACGCAGCTGGACGAGGCCTCCAGCTCGGGCTCTAGTCAGCCGCCCAGCTCCGGGTATCGCGGCTCGTCGACGCTGCTCACCGACTCGGAGGTCGAT------GCGGATCCCATGAAGCAGATGTATGTCTACCAGTACGAGCAGCAG---CGCATGGACTCGGGCGCGGAGACGAGTCCTGCCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................CAGCTCCGGGTATCGCGGCT..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...............................................................TCCAGCTCGGGCTCTAGTCAGCCG................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................CTACCAGTACGAGCAGCAG---CGCATGGA............................	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................ATCCCATGAAGCAGATGTATGT..........................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................CTCTAGTCAGCCGCCCAGCTCC.......................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................................................................................................GGGTATCGCGGCTCGTCGACGCTGCT.............................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................GCTGGACGAGGCCTCCAGCTCGGGCTCT.........................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
....................................................................................................................GCTGCTCACCGACTCGGAGGTC.............................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................CTGCTCACCGACTCGGAGGTCGAT------GCGG................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................................................................................................GGCTCGTCGACGCTGCTCACC.........................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GACTCGGGCGCGGAGACGA...........	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................GTCGAT------GCGGATCCCATGAA......................................................................	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................TCACCGACTCGGAGGTCGAT------GCGG................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

ACCTTGCAGCTGCAACAGCAACAG---------CAGC---AGCAGACACAAATGGATGAGGCATCCAGTTCGGGCTCCAGTCAACCGCCCAGCTCCGGCTATCGTGGCTCGTCCACGCTGCTGACCGACTCAGAGGCGGATGCC---GCCGATCCCCTGAAACAGATGTATGTCTATCAGTATGAACAGCAG---CGC---------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................CCCAGCTCCGGCTATCGTGGCTC.........................................................................................................................	23	1	1.00	1	1	0
....................ACAG---------CAGC---AGCAGACACA.....................................................................................................................................................................................	18	4	0.25	1	1	0

droAna3

TACTTCCAG---------------------------------------CAGACAGACGAGGCCTCCAGTTCCGGATCGAGTCAGCAGCCCAGCTCAGGGTATCGAGGGTCATCCACTCTCCTCACGGACTCCGAGTTGGAC------GCCGATCCACTGAAGCAGATGTATGTGTACCAGTACGATCAACAG---CGCATGGATTCGGGCGTGGAAACGAGTCCAAG----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................AGACGAGGCCTCCAGTTCCGGAT...........................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................GTACCAGTACGATCAACAG---CGCATGG.............................	26	1	1.00	1	0	0	0	0	1	0
................................................................................................................................CTCCGAGTTGGAC------GCCGATC.............................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................AGTTCCGGATCGAGTCAGCAGCCC.............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................GTACCAGTACGATCAACAG---CGCAT...............................	24	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................GCCGATCCACTGAAGCAGATGTATG...........................................................	25	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................GCAGATGTATGTGTACCAGTACGA..............................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................ATGGATTCGGGCGTGGAAACG............	21	1	1.00	1	1	0	0	0	0	0
.....................................................AGACGAGGCCTCCAGTTCCGGATCG.........................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................AGCAGATGTATGTGTACCAGTA.................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................C------GCCGATCCACTGAAGCT...................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................................CAGTTCCGGATCGAGTCAG...................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................AGCAGCCCAGCTCAGGGTATCG...............................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................CAACAG---CGCATGGATTCGGGC.....................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................GAAGCAGATGTATGTGTACCAGT..................................................	23	1	1.00	1	0	0	0	0	1	0
............................................................................CGAGTCAGCAGCCCAGCTCAGGGT...................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................AGGCCTCCAGTTCCGGATCGAGTC.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...............................................................................GTCAGCAGCCCAGCTCAGGGT...................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................GACGAGGCCTCCAGTTCCGGAT...........................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................CTCTCCTCACGGACTCCGAGTT..............................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................AGTACGATCAACAG---CGCATGGATT..........................	24	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................GTTGGAC------GCCGATCCACTGAAGCAGAT................................................................	27	1	1.00	1	0	0	0	0	1	0
............................................................................CGAGTCAGCAGCCCAGCTCAG......................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................AGTACGATCAACAG---CGCATGG.............................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................TCAACAG---CGCATGGATTCGGGCGTG..................	25	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................AGTTGGAC------GCCGATCCACTG........................................................................	20	1	1.00	1	1	0	0	0	0	0

droBip1

TACTTCCAG---------------------------------------CAGACAGACGAAGCCTCCAGTTCCGGATCGAGTCAGCAGCCCAGCTCCGGTTATCGCGGGTCATCCACTCTCCTCACGGACTCCGAGTTGGAC------GCAGATCCTCTGAAGCAGATGTACGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAACAAGCCCGAG----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TACTTCCAG------------------------GG------ACAGACCCAGATGGACGAGGCCTCCAGTTCGGGATCGAGTCAGCAGCCCAGCTCTGGCTATCGCGGCTCGTCCACACTGCTGACCGACTCCGAGTTGGAT------ACGGATCCGCTGAAGCAGATGTATGTGTACCAATATGATCAGCAG---CGCATGGACTCTGGTGTGGAGACGAGTCCCGG----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TACTTCCAG------------------------GGACAGCAGCAGACCCAGATGGACGAGGCCTCCAGCTCGGGATCCAGCCAGCAGCCCAGCTCCGGCTATCGTGGCTCGTCCACGCTGCTCACCGACTCCGAGCTGGAT------GTGGATCCGCTCAAGCAGATGTACGTGTACCAGTACGATCAGCAG---CGTATGGATTCCGGCGTGGAGACGAG----------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TACTTCCAGGAGCAGGG------TCAGGGCCAAGGGCAGGGGCAGACCCAAATGGACGAGGCCTCCAGCTCGGGTTCGAGTCAGCCGCCCAGCTCCGGCTACCGTGGCTCGTCCACGCTGCTCACCGACTCCGAGCTGGAT------GTTGATCCGCTGAAGCAGATGTACGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAACGAGTCCCGG----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCTTCCAG------------------------GGGC---AGCAGACCCAAATGGACGAGGCCTCCAGCTCGGGATCGAGTCAGCAGCCCAGCTCTGGCTATCGTGGCTCATCCACGCTGCTCACCGACTCCGAGTTGGAT------GTGGATCCGCTCAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGATTCTGGCG--------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TACTTCCAG------------------------GGAC---AGCAGACTCAGATGGATGAGGCCTCTAGTTCGGGATCCAGTCAGCCGCCCAGCTCTGGCTATCGCGGCTCATCCACGCTGCTAACCGACTCCGAGCTGGAT------GTGGATCCGCTGAAGCAGATGTATGTGTATCAGTACGACCAGCAG---CGCATGGACTCGGGCGTGGAAACGAGTCC-------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACTTCCAG------------------------GGGC---AGCAGACTCTGATGGATGAGGCCTCCAGCTCGGGATCCAGTCAACAGCCCAGTTCCGGCTATCGTGGCTCCTCCACGCTGCTCACCGACTCCGAGTTGGAT------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACCAGGACCAA---CAG---------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TACTTCCAG------------------------GGAC---AGCAAACGCAAATGGACGAGGCCTCCAGCTCGGGATCCAGTCAGCAGCCCAGCTCTGGCTATCGTGGTTCATCCACGCTGCTCACCGACTCAGAGTTGGAT------GTGGATCCACTGAAGCAAATGTATGTCTATCAATACGATCAGCAG---CGCATGGATTCGGGTGTGGAAAC-------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TACTTCCAG------------------------GGCC---AGCAGACCCAAACGGACGAGGCATCCAGCTCGGGATCCAGTCAACAGCCCAGCTCCGGTTATCGTGGCTCATCAACGCTGCTCACCGACTCCGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGACTCGGGCGTGGAAAC-------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................GAGGCATCCAGCTCGGGATCCAGTCA....................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GACTCCGAGCTGGAC------GTGGAT..............................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
...........................................................................................................................ACCGACTCCGAGCTGGAC------....................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GTGGATCCGCTGAAGCAGATGTATGT..........................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................CTCATCAACGCTGCTCACCGAC......................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GCATGGACTCGGGCGTG..................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAGCTGGAC------GTGGATCCGCTGAAGC....................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATGTGTACCAGTACGATCAGCAG---CGCA................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGGACTCGGGCGTGGAAGG-------------	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AACGCTGCTCACCGACTCCGAGCT..............................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATGTGTACCAGTACGATCAGC.........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................GGAC------GTGGATCCGCTGAAGCAGAT................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CTCCGAGCTGGAC------GTGGATCCG...........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TACTTCCAG------------------------GGCC---AGCAGACCCAAATGGACGAGGCATCCAGCTCGGGATCCAGTCAGCAGCCCAGCTCCGGTTATCGTGGCTCATCCACGCTGCTCACCGACTCTGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAAC-------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................GCTCACCGACTCTGAGCTGGAC------....................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CATCCACGCTGCTCACCGACTCTGAGCT..............................................................................................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTACCAGTACGATCAGCAG---C...................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAGCAG---CGCATGGATTCGGGC.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GCAG---CGCATGGATTCGGGC.....................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTCAGCAGCCCAGCTCCGGTTATCGG..............................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCAGCAG---CGCATGGATTCGGGC.....................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TGCTCACCGACTCTGAGCTGGAC------GTGG................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................CACCGACTCTGAGCTGGAC------GTGG................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAGCAG---CGCATGGATTCGGGCGT...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CAGCCCAGCTCCGGTTAT.................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...TTCCAG------------------------GGCC---AGCAGACCCAAATGGA...............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................TGGACGAGGCATCCAGCTCGGGATCC.........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAG---CGCATGGATTCGGGC.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCTGAGCTGGAC------GTGGATCC............................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CAGCCCAGCTCCGGTTATCGT..............................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTATGTGTACCAGTACGATCAGCAG---C...................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................TCACCGACTCTGAGCTGGAC------GTGGA...............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

TACTTCCAG------------------------GGCC---AGCAGACCCAAATGGACGAGGCATCCAGCTCGGGATCCAGTCAGCAGCCCAGCTCCGGTTATCGTGGCTCATCCACGCTGCTCACCGACTCTGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGC---------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................GTGGATCCGCTGAAGCAGATGT..............................................................	22	1	1.00	1	1	0	0	0
...............................................................TCCAGCTCGGGATCCAGTCAGCAGC...............................................................................................................................................	25	1	1.00	1	0	1	0	0
......................................................................................................................TGCTCACCGACTCTGAGCTGGA...........................................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................TGAGCTGGAC------GTGGATCCGCT.........................................................................	21	1	1.00	1	0	0	0	1
.........................................................................................................................................GGAC------GTGGATCCGCTGAAGCAGAT................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................................................AGCAGATGTATGTGTACCAGTA.................................................	22	1	1.00	1	0	1	0	0
...................................................................................................................................................GTGGATCCGCTGAAGCAG..................................................................	18	1	1.00	1	1	0	0	0
.............................................................................................................................................................................GTACCAGTACGATCAGCAG---C...................................	20	1	1.00	1	0	0	1	0
..........................................................................................................................CACCGACTCTGAGCTGGAC------GTGG................................................................................	23	1	1.00	1	0	0	1	0
....................................C---AGCAGACCCAAATGGACGAGG..........................................................................................................................................................................	22	1	1.00	1	0	0	0	1
.................................GGCC---AGCAGACCCAAATGGACGAG...........................................................................................................................................................................	24	1	1.00	1	0	0	1	0
....................................................................................................................GCTGCTCACCGACTCTGAGCTG.............................................................................................	22	1	1.00	1	1	0	0	0
...................................................................................................................................................GTGGATCCGCTGAAGCAGATGTATGTG.........................................................	27	1	1.00	1	0	0	1	0
.........................................................................................................................................................................ATGTGTACCAGTACGATCAGCAG---CGC---------------------------------	26	1	1.00	1	0	0	1	0

droYak3

TACTTCCAG------------------------GGCC---AGCAGACCCACATGGACGAGGCATCCAGCTCGGGATCCAGTCAGCCGCCCAGCTCCGGCTATCGCGGCTCATCCACGCTGCTTACCGACTCGGAGTTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGATTCGGGCGTGGAAAC-------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................GGCTCATCCACGCTGCTTACC.........................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCAGCAG---CGCATGGATTCGGGCGTGGA................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................CCAGTCAGCCGCCCAGCTCCGGCTATCG...............................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................CAGTCAGCCGCCCAGCTCCGGCTATCGC..............................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................CTTACCGACTCGGAGTTGGAC------GTGGAT..............................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ATCAGCAG---CGCATGGATTCGGG......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................GCTGCTTACCGACTCGGAGT...............................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................CAGCCGCCCAGCTCCGGCTATCGC..............................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GCAG---CGCATGGATTCGGGCGTGG.................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................TCGGAGTTGGAC------GTGGATCC............................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATGTGTACCAGTACGATCAGCAG---CGCA................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................GATCAGCAG---CGCATGGATTCGGG......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AGTACGATCAGCAG---CGCATGG.............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................AGTACGATCAGCAG---CGCATGGATTC.........................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TACCGACTCGGAGTTGGAC------GTGG................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAG---CGCATGGATTCGGGCGTG..................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................GGCC---AGCAGACCCACATGGACGAGG..........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................GAGTTGGAC------GTGGATCCGCT.........................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................CAGCTCGGGATCCAGTCAGC..................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................GTATGTGTACCAGTACGATCAGCAG---CGC.................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................TGCTTACCGACTCGGAGTTGGAC------....................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTGGAC------GTGGATCCGCTGAAGCA...................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GCAG---CGCATGGATTCGGGC.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................CCAGCTCGGGATCCAGTCAGCCGCCCA............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................ATCCACGCTGCTTACCGACT.....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TACTTCCAG------------------------GGCC---AGCAGACCCAAATGGACGAGGCATCCAGCTCGGGTTCCAGTCAACAGCCCAGTTCCGGCTACCGCGGCTCATCCACGCTGCTTACCGACTCTGAGCTGGAC------GTGGATCCGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAG---CGCATGGACTCGGGCGTGGAAAC-------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................GCAG---CGCATGGACTCGGGCGT...................	21	1	2.00	2	1	1	0	0	0	0	0
......................................................................................................................................................................TGTATGTGTACCAGTACGATCAG..........................................	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................GTACCAGTACGATCAGCAG---CGCATG..............................	25	1	1.00	1	0	1	0	0	0	0	0
............................................GACCCAAATGGACGAGGCAT.......................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................TACCGACTCTGAGCTGGAC------GTGG................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................ATCCGCTGAAGCAGATGTATGTGTACCA....................................................	28	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................TCCGCTGAAGCAGATGTATG...........................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................ACCCAAATGGACGAGGCAT.......................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
......CAG------------------------GGCC---AGCAGACCCAAATGGACGAGGC.........................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................ATGTGTACCAGTACGATCAGCAG---CGC.................................	26	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................C------GTGGATCCGCTGAAGCAGATGTATGT..........................................................	27	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................TGGAC------GTGGATCCGCTGAAGCAGATG...............................................................	26	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................GGAC------GTGGATCCGCTGAAGCAGATG...............................................................	25	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................C------GTGGATCCGCTGAAGCAGATGT..............................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................CCCAAATGGACGAGGCATCCAGCTCGGG.............................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................TTACCGACTCTGAGCTGGAC------GTGG................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................GAAGCAGATGTATGTGTACCAGTACG...............................................	26	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................GCTGCTTACCGACTCTGAGCTGGAC------GT..................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................TTACCGACTCTGAGCTGGAC------GT..................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dpe_178

scaffold_0:36137-36219 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-53.6	-53.4	-53.4