dpe_1768

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+
BEL1-I_DV-int	LTR	Pao	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######-------------------------------------------- AGTATCTTGATCATCGTGAAGGATCCCAGTCCCAAGGGGACCAATAATCTTCTTGATGTGTGCCTGAAAAACAAGTCGTTTGTTATTAAAACGTTTGCTGAGTATTTCAAGATATTGGAACATCTCGATGTCGCTGTGATCCGCATCCGACATTACCAATATGTTTGGGGCTTTAAAATTATTTAATTTTTTTTTTTCAAGGTTTAGTTTATTTTTTTTTTTAAATATTTCAAATCTGGTATTTTATTTGC ************************************************.(((((.....(((.......((((.(((((.......)))))))))..(((..((((((....))))))...)))(((((((.((((...))))..))))))).((((.....))))))).........................)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	M042 female body	V042 embryo
...........CATCGTGCACGATCCCGGTC............................................................................................................................................................................................................................	20	3	6	0.67	4	4	0	0
............ATCGTGCACGATCCCGGTC............................................................................................................................................................................................................................	19	3	10	0.30	3	2	1	0
..............................................ATCTTCTTGATGTGTGCCTAA........................................................................................................................................................................................	21	1	6	0.17	1	0	1	0
...........CATCGTGCACGATCCCGGT.............................................................................................................................................................................................................................	19	3	13	0.15	2	0	1	1

TCATAGAACTAGTAGCACTTCCTAGGGTCAGGGTTCCCCTGGTTATTAGAAGAACTACACACGGACTTTTTGTTCAGCAAACAATAATTTTGCAAACGACTCATAAAGTTCTATAACCTTGTAGAGCTACAGCGACACTAGGCGTAGGCTGTAATGGTTATACAAACCCCGAAATTTTAATAAATTAAAAAAAAAAAGTTCCAAATCAAATAAAAAAAAAAATTTATAAAGTTTAGACCATAAAATAAACG ************************************************.(((((.....(((.......((((.(((((.......)))))))))..(((..((((((....))))))...)))(((((((.((((...))))..))))))).((((.....))))))).........................)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head	V111 male body
................ACTTCCGAGGGTCACGGTTC.......................................................................................................................................................................................................................	20	2	3	2.00	6	5	0	1
................ACTTCCGAGGGTCAGGGTTA.......................................................................................................................................................................................................................	20	2	1	1.00	1	1	0	0
................ACTTCCTAGGGTCACGGTTC.......................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0
...............CACTTCAGAGGGTCAGGGTTC.......................................................................................................................................................................................................................	21	2	2	0.50	1	1	0	0
..............ACACTTCCGAGGGTCAAGGTTC.......................................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0
...............CACTTCATAGGGTCACGGTTC.......................................................................................................................................................................................................................	21	2	2	0.50	1	1	0	0
.................CTTCCGAGGGTCACGGTTC.......................................................................................................................................................................................................................	19	2	3	0.33	1	1	0	0
...............GACTTCCGAGGGTCACGGTTC.......................................................................................................................................................................................................................	21	3	3	0.33	1	1	0	0
...............CACTTCCGAGGTTCACGGTTC.......................................................................................................................................................................................................................	21	3	10	0.20	2	1	1	0
...............CACTTCCCAGAGTCACGGTTC.......................................................................................................................................................................................................................	21	3	5	0.20	1	1	0	0
................ACTTCCGAGGGTCCCGGTTC.......................................................................................................................................................................................................................	20	3	12	0.17	2	2	0	0
.................CTTCGTAGGGTCAGTGATC.......................................................................................................................................................................................................................	19	3	7	0.14	1	0	1	0
................ACTTGCCAGGGTCAAGGTTC.......................................................................................................................................................................................................................	20	3	9	0.11	1	1	0	0
.............................................................................................................................................GCGCAGGCTGGAAGGGTTA...........................................................................................	19	3	10	0.10	1	1	0	0
................ACTTCCTAGCGTCACGGTTG.......................................................................................................................................................................................................................	20	3	10	0.10	1	1	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_5:3766805-3767055 -	dpe_1768	AGTATCTTGATCATCGTGAAGGATCCCAGTCCCAAGGGGACCAATAATCTTCTTGATGTGTGCCTGAAAAACAAGTCGTTTGTTATTAAAACGTTTGCTGAGTATTTCAAGATATTGGAACATCTCGATGTCGCTGTGATCCGCATCCGACATTACCAATATGTTTGGGGCTTTAAAATTATTTAATTTTT-TTTTTTCAAGGTTTAGTTTATTTTTTTTTTTAAATATTTCAAATCTGGTATTTTAT-TTGC
dp5	4_group1:1438914-1439163 +		AGTATCTTGATCATCGTGAAGGATCCCAGTCCCAAGGGGACCAATAATCTTCTTGATGTGTGCCTGAAAAACAAGTCGTTTGTTATTAAAACGTTCACTGAGTATTTCCAGATATTGGAACAT-CCGATGTCGCTGTGATCCGCATCCGACATTGCCAATATGTTTGGGGCTTTAAAATTATTTAGTATTTATTTTTTCAAGGTTTAGTGTATATTTTTTTT--AATATTTAAAATCTGGTATTTTATTTTGC
droVir3	scaffold_4736:979-1076 +		------------------------------------GAGCCCAAGAATCTTATTGATGTGTGCCTGGAAAACAAGACGTTTGTTACTAAATCTCCTATTTAACATTTCAATG--TTGGAC-AGCTCGGTACCTTTGT--------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15027:4933-5008 +		------------------------------------GAGCCCAATAATCTCCTTGATATGCGATTGGAAAACTAATCGCTTGTTGTTAAAGCGTTTGCTTAGAATGTCCAAA---------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000451427:1819-1882 +		----------------------------------------CCCAAAATCTCTGCGATATGTGCCTGAAAAATAAGACGTTTGTTGTTAAAGCGTTTGTTGAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000762602:19692-19766 +		------------------------------------GAGCCCAAGAATTTCATTGATGTGTGCCTGGAAAACAAGACGTTTATTATTAAAACGTTTATTTAGGATTTCTAG----------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302397:61410-61480 +		----------------------------------------CCAAACATCTTGCTGATGTGTGCCTGAAAAACAAGACGCCTATTACTAAAACGTTCATTTAATAGTTCCAG----------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000411063:3914-3988 +		------------------------------------GAGCCCAAGAATTTCATTGATGTGTGCCTGGAAAACAAGACGTTTATTATTAAAGCGCTTATTTAAGATTTCTAG----------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_28:638622-638631 +		ATTGATTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AGTATCTTGATCATCGTGAAGGATCCCAGTCCCAAGGGGACCAATAATCTTCTTGATGTGTGCCTGAAAAACAAGTCGTTTGTTATTAAAACGTTTGCTGAGTATTTCAAGATATTGGAACATCTCGATGTCGCTGTGATCCGCATCCGACATTACCAATATGTTTGGGGCTTTAAAATTATTTAATTTTT-TTTTTTCAAGGTTTAGTTTATTTTTTTTTTTAAATATTTCAAATCTGGTATTTTAT-TTGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

dp5

AGTATCTTGATCATCGTGAAGGATCCCAGTCCCAAGGGGACCAATAATCTTCTTGATGTGTGCCTGAAAAACAAGTCGTTTGTTATTAAAACGTTCACTGAGTATTTCCAGATATTGGAACAT-CCGATGTCGCTGTGATCCGCATCCGACATTGCCAATATGTTTGGGGCTTTAAAATTATTTAGTATTTATTTTTTCAAGGTTTAGTGTATATTTTTTTT--AATATTTAAAATCTGGTATTTTATTTTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................TTGATGTGTGCCTGAAAAACAAGTC................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................AATCTTCTTGATGTGTGCCT............................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................AATCTTCTTGATGTGTGCCTG...........................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0

droVir3

------------------------------------GAGCCCAAGAATCTTATTGATGTGTGCCTGGAAAACAAGACGTTTGTTACTAAATCTCCTATTTAACATTTCAATG--TTGGAC-AGCTCGGTACCTTTGT--------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................TGATGTGTGCCTGGAAAACAAGACGT..............................................................................................................................................................................	26	14	0.71	10	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TGATGTGTGCCTGGAAAACAAGACG...............................................................................................................................................................................	25	15	0.60	9	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TGATGTGTGCCTGGAAAACAAGACGTT.............................................................................................................................................................................	27	13	0.54	7	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TCTTATTGATGTGTGCCTGGAAAACA....................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TTACTAAATCTCCTATTTAACATTT..................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TGGAC-AGCTCGGTACCTT.......................................................................................................................	18	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTGTTACTAAATCTCCTATTTAACA.....................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTGATGTGTGCCTGGAAAACAAGACGT..............................................................................................................................................................................	27	14	0.50	7	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TACTAAATCTCCTATTTAACATTTCAATG--...........................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAAGACGTTTGTTACTAAATCTC...............................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TCAATG--TTGGAC-AGCTCGGTACCTTT......................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TAACATTTCAATG--TTGGAC-AGCTCGGT............................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TTAACATTTCAATG--TTGGAC-AGCTCG..............................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TCAATG--TTGGAC-AGCTCGGTACC.........................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTGTTACTAAATCTCCTATTTAACATT...................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TCAATG--TTGGAC-AGCTCGGTACCTT.......................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAAGACGTTTGTTACTAAATCTCCTA............................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTGTTACTAAATCTCCTATTTAAA......................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AACAAGACGTTTGTTACTAAATCTCC..............................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TGTTACTAAATCTCCTATTTAACATT...................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTGATGTGTGCCTGGAAAACAAGACG...............................................................................................................................................................................	26	15	0.40	6	0	0	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GCCTGGAAAACAAGACGTTTGTTAC.......................................................................................................................................................................	25	14	0.21	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GCCTGGAAAACAAGACGTTTGTTACT......................................................................................................................................................................	26	13	0.15	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTGATGTGTGCCTGGAAAACAAGAC................................................................................................................................................................................	25	15	0.13	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TGTGCCTGGAAAACAAGACGTTTG...........................................................................................................................................................................	24	16	0.13	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GCCTGGAAAACAAGACGTT.............................................................................................................................................................................	19	17	0.12	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GCCTGGAAAACAAGACGT..............................................................................................................................................................................	18	18	0.11	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TGGAAAACAAGACGTTTGTTACTAAATC.................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GCCTGGAAAACAAGACGTTTGTTACTA.....................................................................................................................................................................	27	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAAGACGTTTGTTACTAAATCT................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAAGACGTTTGTTACTAAATC.................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTGATGTGTGCCTGGAAAACAAGACGTT.............................................................................................................................................................................	28	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTGGAAAACAAGACGTTTGTTA........................................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TGCCTGGAAAACAAGACGTTTGTTAC.......................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................GATGTGTGCCTGGAAAACAAGACGT..............................................................................................................................................................................	25	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TGCCTGGAAAACAAGACGTTTGTTACCC.....................................................................................................................................................................	28	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTGATGTGTGCCTGGAAAACAAG..................................................................................................................................................................................	23	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TGTGTGCCTGGAAAACAAGACGTTTGT..........................................................................................................................................................................	27	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTGGAAAACAAGACGTTTGT..........................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TGTGTGCCTGGAAAACAAGACGTTTG...........................................................................................................................................................................	26	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................GTGTGCCTGGAAAACAAGACGT..............................................................................................................................................................................	22	18	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

------------------------------------GAGCCCAATAATCTCCTTGATATGCGATTGGAAAACTAATCGCTTGTTGTTAAAGCGTTTGCTTAGAATGTCCAAA---------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droFic1

----------------------------------------CCCAAAATCTCTGCGATATGTGCCTGAAAAATAAGACGTTTGTTGTTAAAGCGTTTGTTGAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

------------------------------------GAGCCCAAGAATTTCATTGATGTGTGCCTGGAAAACAAGACGTTTATTATTAAAACGTTTATTTAGGATTTCTAG----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

----------------------------------------CCAAACATCTTGCTGATGTGTGCCTGAAAAACAAGACGCCTATTACTAAAACGTTCATTTAATAGTTCCAG----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

------------------------------------GAGCCCAAGAATTTCATTGATGTGTGCCTGGAAAACAAGACGTTTATTATTAAAGCGCTTATTTAAGATTTCTAG----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droSec2

ATTGATTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dpe_1768

scaffold_5:3766855-3767005 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads