ID:

dpe_1753

 Coordinate:

scaffold_5:2143794-2143944 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL25753-cds]; exon [dper_GLEANR_8316:4]; intron [Dper\GL25753-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron-
MINIME_DNUnknownUnknown-
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGAAGATGATCAAAATGATAATAGACATCGCAAGCCGAGTAAAGTAAAAGTAAGAAAAGCTCGAAAAACCGAGGTTTTATATTACATGCGATTTCATTCTTATATTTTTACATTTTTAAAATATTATTGTACCCGATACTCTAAATGAGTTTGGGTAAAAATGGATGTGTGTAACGTCCAGAAGGAATCATTTCCGACCCCATAATGTGTATATATTCTTGATCAGCATCAATAGCTGAGTCGATTGAGT
**************************************************((((.((((.((((......)))).))))...))))....((((((.(((..(((((((.........))))))).....(((((((.((((.....)))))))))))....(((((((.....))))))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
.........................................................................................................................................TACTCAAAATGAGTTGGGGTATAA.......................................................................................... 24 3 3 0.33 1 1 0
................................................................................................................................................................................................................TGTATATATTCTTGATCAGCA...................... 21 0 20 0.05 1 0 1

Anti-sense strand reads

AGCTTCTACTAGTTTTACTATTATCTGTAGCGTTCGGCTCATTTCATTTTCATTCTTTTCGAGCTTTTTGGCTCCAAAATATAATGTACGCTAAAGTAAGAATATAAAAATGTAAAAATTTTATAATAACATGGGCTATGAGATTTACTCAAACCCATTTTTACCTACACACATTGCAGGTCTTCCTTAGTAAAGGCTGGGGTATTACACATATATAAGAACTAGTCGTAGTTATCGACTCAGCTAACTCA
**************************************************((((.((((.((((......)))).))))...))))....((((((.(((..(((((((.........))))))).....(((((((.((((.....)))))))))))....(((((((.....))))))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V050
head
 V111
male body
...........................................................CGAGCTTTCCGGCTCCAAA............................................................................................................................................................................. 19 2 4 0.25 1 1 0 0 0
...............................................................................................................................................................................................................CACATATATAAGAACTAGTCGT...................... 22 0 20 0.10 2 0 2 0 0
................................................................................................................................................................TTACCTACACACATTGCAGGTCTTCCTT............................................................... 28 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................................................................AGTTATCGACTCAGCTAACT.. 20 0 20 0.05 1 0 0 1 0
....................................................................................................................................GGGCTATGACATTGACTCA.................................................................................................... 19 2 20 0.05 1 1 0 0 0
.............................................................................................................................................................................ATGCAGGTCTTTCTTAGTAAAG........................................................ 22 2 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_5:2143744-2143994 - dpe_1753 TCGAAGATGA-TCAAAATGATAATAGACATC--------GCAA----------GCC---GAGTAAAGTAAA----------AGTAAGA--------------------------------------AAAGCTCG-----------AAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTTTTATATTACA--------TGCGATT-----------------------------------------------TCATTCTTAT------------------ATTTTTA---------------------CATTTTTAA-AA-------TATTATTGTA-------CCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCATAATGTGTATATATTC---TTGATCAGCATCAATAGCTGAGTCGATTGAGT
dp5 4_group1:3069482-3069732 + dps_1388 TCGAAGATGA-TCAAAATGATAATAGACATC--------GCAA----------GCC---GAGTAAAGTAAA----------AGTAAGA--------------------------------------AAAGCTCG-----------AAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTTTTATATTACA--------TGCGATT-----------------------------------------------TCATTCTTAT------------------ATTTTTA---------------------CATTTTTAA-AA-------TATTATTGTA-------CCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCTTAATGTGTATATATTC---TTGATCAGCATCAATAGCCGAGTCGATTGAGT
droWil2 scf2_1100000010776:592-841 - TCAAAAAGGA---AAAATGTTATT-G-CCAA--------GT---ATACTGCAAGGGTAT---ATAAA--------------CTTCGGC--------------------------------------AT--------------------AGC---------CGA-----AGTTAG-----------------------------------------------------------------------------------------------------------------CTTCTTTGATATTTCTATT----------------------------TGCAATT-----------------------------------------------TTTT------------------------TTTTTTT-------ATAGA---------CATTTCTGGTAG-------TTTTTTTATAC-------CC-----TTGC------------AGAGGGTATTATAAAATTGGTCA-------GATGTTTGTAACGCAC--AGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCATGAGAAGCTAAGTCGATATAGC
droVir3 scaffold_13324:2258020-2258261 - TATGACAAAA-TAAATTTGGCTATGGATAT--------------------------------TTAAATAAA----------AGAGTTAA-------------------------------------AAATTGTT--ATATAATGG---AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGATCTCCTGTTAGA--------CGAACCC-----------------------------------------------TC--------------------------------------------------------------------------ATTTTTATAC-------CCTGAACCCATTAAATATGGGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGC--AGAAGGAGGCATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGCAGCAATAGCCGAGTCGATCTAGC
droMoj3 scaffold_5022:680-931 - CGAAAAGAT------------AATAG----C--------ACAT----------GGT---TACTAACCTAAA----------A-TAAGC------------------------------------------------------------------------GAATCAACAAT-TAAATGT-----------TTATGCTCCTATGCA----------------------------------------------------------------------------------TTCCATTGAAATTTCTATT-----------------------------------------------------------------------------------------------------------------ATTA---------------------ATTATTATA-AT-------TATTTTTATACCCTGAACCCATTATCAAT------GGGAAATCAGGGTATAATGGTTTTTGTTA-------AATGTATAAAACACGC--AGAAGGAGGCGTGGAAGACCCCATAAAATGTATATATTC---TTGATCAGGGCGACGAGCTGAGTCGATTTAGC
droGri2 scaffold_15126:1784895-1785132 + TAAAAGATGTAGCA--GTTTTAAGAGAAAGA--------GAAA----------GGA--------TAATAAA----------GGTAATA--------------------------------------ATACTTTA-----------TAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------CA---TTTAATAAATCA--------T---------------------------------------------------------------GCTCAACTTTCGATTGATA-----GTTTCTATG--------------------------------GCAACCTGGA-------ACCAGAACACAT------TG----AAAATGGGTAATAAGTTTAGAC----------TGAATGTAGCAGGC--AGAAGGAAGCATCTCCGACCCCATATAGCCTATATATTC---TGGGTCAATATCAACAACCAAGTCGATCTAGC
droAna3 scaffold_3894:6661-6884 - AAAATGAAAT-TGAAAATTGAAACTG--------------------------------------A--------------------------------------------------------------CTG---------------A---G-AGACAACTTAGATTGACAAA-GAAAACT-----------GAAGACACAT------------------------------------------------------------------------------------------------------------------------ATGACT--------TACAATTTC-----------------------------------------------AAAATCAT------------------ATG-TCG---------------------C-------------------ATTTTTATAC-------CC-----TTGC------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAG--TGAAGGAGACATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGGATCACCTCCTGAGTCGATATAAG
droBip1 scf7180000393555:6230-6468 - TTGATAAATGCGCAACATTATTACAAACGTT--------GTCA----------TCA---GGGTACAGAATA----------AATGTGG-------------------------------------AAAAGTATA-----------GAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGCTAGATACTGCC--------AGGGAGC-----------------------------------------------TAACAATCAC------------------ATATTTA---------------------TAT--------------------GTAATAC-------CC-----TTGC------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAG--TGAAGGAGACATCTCCGACCCTATAAAGTATATATATTC---TTGATCAGGATCACCTCCTGAGTTGATATGAG
droKik1 scf7180000302258:357655-357877 + TGACT--------GAAATTATAATA--CCCT--------GCAA----------GGGTAT---AATAA-ATA----------AATAACA--------------------------------------AAATTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAATTTTTTTTATTTA-----TTTTTTGTAATAACATACTTTG------TAA----------AATATTTATAC-------CC-----TTG--------------CAGGGTATTATAATTTTAGTCA-------GAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCAACAGCCGAGTCGATCTAGC
droFic1 scf7180000454015:74916-75171 + AACATGCC----CTAAATATCAAAGAACATC--------GGAA----------AGG---AAACAAAGTAAA----------ATCGAAA--------------------------------------TTCGCCCA-----------ATAA------------------------------------------------------------------------------------------------------------------------------------------GTTCATTTATATTTCTTCTTTCGGGGATTTCACATTTCG--------TTGGGTT-----------------------------------------------TTGCTCAC-------------------------------------------------------AC-AT-------TGTTGTTATAC-------CC-----TTGC------AGAGCAAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG--TGAAGGAGACACCTCAGACCCCATAAAGTATATATATTC---TTGATCAGCATCACCATCTGAATCGAAATATG
droEle1 scf7180000491008:2770639-2770889 - TCAAAGATAT-ATGGAGTA---ATAAAAATA--------TAAA----------AAA---GTGCAAATCAAAAAA------------------------------------------------------AGAT-------------------------TTTAAAA--------------------------TAAAAACTAT-----------ACAACTAGGAAAAAAGACGTATCAATTTGAAATGCAGTTCAAAAT-------------------------------GTT------------------------------------------------------------------------------------------------------------------------------GAT-TTT---------------------T-------------------ATTTTTATAC-------CC-----TTGC------------AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG--TGAAGGAGACATCTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCACTAGGCGAGTCGATCTAGC
droRho1 scf7180000764260:4579-4833 - TGACC--------AAAATTATAATACCCTCT--------GCAA----------GGGTAT---AAAAACAA------------TAAAGC--------------------------------------TAA--------------------GT---------CGATTTTCAGATAAAATGTTGGATCA-----------TTC----ATTTCTGAAAAATTCAA------------------------------------------------------------------------------------------------------------------ATAGTTTC------------------------------------------------------------------------------------------------------------AA-AATTTCCAGGCTTGTTATA-------CCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCATGCA-------AAAGTATGTAACAGGT--AGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTC---TTGTTCAGGATCACTAGCCGAGTCGATCTAGC
droBia1 scf7180000299204:7163-7402 + AAAATAATAA---GAAAA------------C--------TCAAG---------GCG---GCGTAAAG-AAA----------AGAAGAA--------------------------------------AAAGATCTGAATCCCACCG---CAC--------------------------------------CTAAATGCCCT-----------GC-------------------------------------------------------------------------------------------------------------AATCAGGTAGATCGAGATTTC--------------------A-----------------ATATCTC----------------------------TCCTTTT---------------------G-------------------ATTTGTATAC-------CC-----TTGC------------AGAGGGTATAATGATTTCAGTCA-------AAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCGTCACAAGTCGAGTCGATCTAGC
droTak1 scf7180000415873:166453-166728 + TCAAAAATCA-TTGTAGTAATAATC--TCAT--------GC---ATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACGATTAGTCGATATAAAATTAGAAACGGACAC----------------------TCATAGATAATGATTCA--------TAC--TTTT--------------------AATACTTTCATTTAAACAATATCTT----------------------------TATTTTA---------------------TATTTGTAA-AA-------AATTATTATA-------CCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGGG--AGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGGATCACTAGCCGAGTCGATCTAGC
droEug1 scf7180000409676:160592-160862 - CGAAGACTTTGACTATAATATTATAAACGCCCCAGATTTTTTT----------TCC---GCGGAAAACTAAAAAAGGTAAGATTCTAG-GAACTATAAGCTCTATTGGCTTCAGATTAAACGTGTACACTTATA-----------A-----------------------------------------------------------TTTT-----------------------------TGAG-----------------------------------------------------------------------------------A--------TGCA-------------------------------------------------------------------------------------------------------------------------------------AATTCAGCACCCGTTACTCGT------AGAGTAAAAGGGTATATTAGATTCGTTGA-------AAAGTATGTAATAGAT--AGAAGGAAGCGTTTGCGACCCTATAAAGTATATATATTC---TTGATCAGGATCAATAGCGAAGTCGATTGAGC
dm3 chr4:1032026-1032236 - TCGATGTATAATTTGGTTATCAAGAGATTTT--------ACAAA---------ATG--------TCATAAA----------AAGAATA--------------------------------------AAAGCTTG-----------AAAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATA-------TAGA--------CTA---------------------------------------------------------------------------------------------------------------------------------------AT-------CC-----AAGC-AGATCT--A-TACAAAATATACTAGATTCGTTGC-------AAAGTATGTAACAGGTTTAACAGGAATCGTTTCCGACCATGTAAGGTACATACATACATATTGATCAGGATCAATAGCCGAGTCGATCTGGC
droSim2 2r:2031073-2031316 + TTTGAGAAAG-CAAAAACTAAAATAGAAAT--------------------------------------------------------------------------------------------------ATAT-------------------------TTTAAAAGTGTCAA-GTGCAT-----------GAAAAAACTAT-----------TT-------------------------------------------------------------------------------------------------------------GATT--------AAAAATAACGAAACTATATCTATTTTTAT-----------------------------------ACCCGCT----------------------------------------------------------TCCTTTTATA-------CCTGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGC--AGAAGGAAGCGTTCCCGACTATATAGAGTATACATATTC---TTGATCAGGATCAAGAGCCGAGTCGATCTAGC
droSec2 scaffold_26:203404-203633 - AAA------------------------CGCG--------ACAA----------TCG---GAACAGAAAACA----------GTAAATC--------------------------------------AAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG--------------------AAAATTTAAATTTAAAAAAATTATTTCCTTCATAT------------------AT---AA---------------------ATGATAACA-CA------TGTTATTTATA-------CCCGTTACTTGT------AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACTGGT--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCACGATCAATAGCCGAGGCGATCCAGC
droYak3 4:292105-292369 + TGCAAAATAA-TTAAAAGGTCAAG---------------TGAAC-CGGTGCAGGCC---GT-TAATGTGAA----------CATCAGC--------------------------------------AAAAACCA-----------AACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA-------AGTGCT--------CGCAAC------------------------------------------------TCATTCATAC------------------GTTTATA-TATATGCATACTCCACTTAG------TGT----------ATTTTTTATA-------CCCGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGC--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCAGGATCAATAGCCGAGTCGATCTGGC
droEre2 scaffold_4929:22921897-22922148 + AGGAAGGTTA----ATTTAAAAATAAACATG--------TAAA----------GCT---GCGTAAATC------------------------------------------------------------------------------------------------TTTCAGGT---TTGTTAGAACGTAAGAATAATTTTC----ATAATCTAAAACTACAA------------------------------------------------------------------------------------------------------------------ATAAAT------------------------------------------------CCATCAAAT------------------T---TAA---------------------TTTAAATCA-AA-------TTTATTTATA-------CCCGATACTCGT------AGAGTAAAAGAGTGTACTAGATTCGTTGA-------AAAGTATGTAACAGGC--AGAAGGAATCGTTTCCGACCATATAA---------ATTC---TTGATCATGATCAATGGCCGAGTCGATTTGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TCGAAGATGA-TCAAAATGATAATAGACATC--------GCAA----------GCC---GAGTAAAGTAAA----------AGTAAGA--------------------------------------AAAGCTCG-----------AAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTTTTATATTACA--------TGCGATT-----------------------------------------------TCATTCTTAT------------------ATTTTTA---------------------CATTTTTAA-AA-------TATTATTGTA-------CCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCATAATGTGTATATATTC---TTGATCAGCATCAATAGCTGAGTCGATTGAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATATTC---TTGATCAGCA......................21200.051000010
dp5
TCGAAGATGA-TCAAAATGATAATAGACATC--------GCAA----------GCC---GAGTAAAGTAAA----------AGTAAGA--------------------------------------AAAGCTCG-----------AAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTTTTATATTACA--------TGCGATT-----------------------------------------------TCATTCTTAT------------------ATTTTTA---------------------CATTTTTAA-AA-------TATTATTGTA-------CCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCTTAATGTGTATATATTC---TTGATCAGCATCAATAGCCGAGTCGATTGAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCC--AGAAGGAATC................................................................25200.551101100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT.....27200.4080000206000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC---TTGATCAGCATCAATAGCCGAGT.........27200.4080800000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAG..........20200.3060600000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCC--AGAAGGA...................................................................22200.2550500000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTG...20200.2040000004000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATATTC---TTGATCAGCA......................21200.2040400000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGT19200.2040300001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTC---TTGATCAGC.......................21200.2040100000030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCGAGTCG.......22200.1530300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAAA-TGGATGTGTGTAA.................................................................................2190.1110000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA-TGGATGTGTGTAACG...............................................................................21100.1010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGA..21200.1020000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCC--AGAAGGAATCATTTCCGACCC.....................................................26110.0910010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCATTTCCGACCCC....................................................20120.0810100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCATTTCCGACCCC....................................................21120.0810100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAGT28180.0610100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGT22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATTC---TTGATCAGCA......................20200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCC.............19200.0510000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCC--AGAAGG....................................................................21200.0510000100000
droWil2
TCAAAAAGGA---AAAATGTTATT-G-CCAA--------GT---ATACTGCAAGGGTAT---ATAAA--------------CTTCGGC--------------------------------------AT--------------------AGC---------CGA-----AGTTAG-----------------------------------------------------------------------------------------------------------------CTTCTTTGATATTTCTATT----------------------------TGCAATT-----------------------------------------------TTTT------------------------TTTTTTT-------ATAGA---------CATTTCTGGTAG-------TTTTTTTATAC-------CC-----TTGC------------AGAGGGTATTATAAAATTGGTCA-------GATGTTTGTAACGCAC--AGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCATGAGAAGCTAAGTCGATATAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAACGCAC--AGAAGGAGACGTTT............................................................25201.9038038000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAAAATTGGTCA-------GATGTTTGT...................................................................................26200.30606000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC------------AGAGGGTATTATAAAATTGGTCA-------............................................................................................26200.20400040
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAATTGGTCA-------GATGTTTGTAACGC..............................................................................28200.10202000
.......................................................................................C--------------------------------------AT--------------------AGC---------CGA-----AGTTAG-----------------------------------------------------------------------------------------------------------------CTTCTTTGATAT.......................................................................................................................................................................................................................................................................................................................................27200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATTGGTCA-------GATGTTTG....................................................................................20200.05100010
droVir3
TATGACAAAA-TAAATTTGGCTATGGATAT--------------------------------TTAAATAAA----------AGAGTTAA-------------------------------------AAATTGTT--ATATAATGG---AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGATCTCCTGTTAGA--------CGAACCC-----------------------------------------------TC--------------------------------------------------------------------------ATTTTTATAC-------CCTGAACCCATTAAATATGGGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGC--AGAAGGAGGCATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGCAGCAATAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGGCATC.............................................................26100.202000000001000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGCAGCAATAGCCGAGTCG.......27120.172000000000000000000000000010000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGCAGCAATAG...............24200.153000000000000000000000000030000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGGC................................................................23140.142000000002000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATATGGGTATAAGGGTATATTGTA...........................................................................................................27160.132000010000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGC--AGAAGGAG..................................................................22170.122000000000000000000000000000100000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAGGCA...............................................................21200.102000000000010000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGCAGCAATAGCCG............23200.102000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGCAGCAATAGC..............25200.102000000000000000000000000000001000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGGCAT..............................................................25110.091000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGC--AGAAGGAGG.................................................................24110.091001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAGGCATC.............................................................23110.091000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC--AGAAGGAGGCATC.............................................................21120.081000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCAGCAATAGCCGAGTCG.......25130.081000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGC--AGAAGGAG..................................................................24140.071000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAGCAATAGCCGAGTCGA......24150.071000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAATATGGGTATAAGGGT...................................................................................................................21150.071000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGG.................................................................22150.071000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AGAAGGAGGCATCTCCGACC......................................................21150.071000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGC--AGAAGGAGGCAT..............................................................21170.061000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGCATCTCCGACCC.....................................................19180.061001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGGCATCTCCGACCC.....................................................21180.061001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAATAGCCGAGTCG.......19180.061000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATCTCCGACCCCATA.................................................21190.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGCAGCAATAGCCGAGTC........27200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGCAGCAATAGCCG............27200.051000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATTTGTGCAAAATCCAAAT.........................................................................................23200.051000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGCAGCAATAG...............19200.051000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC--AGAAGG....................................................................26200.051000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAG..................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC--AGAAGGAGGCATCTCCGT........................................................26200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAG..................................................................18200.051100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAGGC................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATCTCCGACCCC....................................................18200.051000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTC---TTGATCAGCAGCAATAGCC.............25200.051000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGCAGCAATAGCCGAGTC........26200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
CGAAAAGAT------------AATAG----C--------ACAT----------GGT---TACTAACCTAAA----------A-TAAGC------------------------------------------------------------------------GAATCAACAAT-TAAATGT-----------TTATGCTCCTATGCA----------------------------------------------------------------------------------TTCCATTGAAATTTCTATT-----------------------------------------------------------------------------------------------------------------ATTA---------------------ATTATTATA-AT-------TATTTTTATACCCTGAACCCATTATCAAT------GGGAAATCAGGGTATAATGGTTTTTGTTA-------AATGTATAAAACACGC--AGAAGGAGGCGTGGAAGACCCCATAAAATGTATATATTC---TTGATCAGGGCGACGAGCTGAGTCGATTTAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...AAAGAT------------AATAG----C--------ACAT----------GGT---TACTAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.574400000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGTATAATGGTTTTTGT.....................................................................................................2180.252200000
............................................................................................................................................................................TAAATGT-----------TTATGCTCCTATGCA----------------------------------------------------------------------------------TTCCA..............................................................................................................................................................................................................................................................................................................................................2750.201100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGTATAATGGTTTTTGTT....................................................................................................2270.141100000
........................AG----C--------ACAT----------GGT---TACTAACCTAAA----------A-TAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.141100000
CGAAAAGAT------------AATAG----C--------ACAT----------GGT---TA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.131100000
.GAAAAGAT------------AATAG----C--------ACAT----------GG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.131100000
...AAAGAT------------AATAG----C--------ACAT----------GGT---TACTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131100000
...AAAGAT------------AATAG----C--------ACAT----------GGT---TACTAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.131100000
CGAAAAGAT------------AATAG----C--------ACAT----------GGT---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.131000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTATAATGGTTTTTGTTT-------............................................................................................22160.061100000
droGri2
TAAAAGATGTAGCA--GTTTTAAGAGAAAGA--------GAAA----------GGA--------TAATAAA----------GGTAATA--------------------------------------ATACTTTA-----------TAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------CA---TTTAATAAATCA--------T---------------------------------------------------------------GCTCAACTTTCGATTGATA-----GTTTCTATG--------------------------------GCAACCTGGA-------ACCAGAACACAT------TG----AAAATGGGTAATAAGTTTAGAC----------TGAATGTAGCAGGC--AGAAGGAAGCATCTCCGACCCCATATAGCCTATATATTC---TGGGTCAATATCAACAACCAAGTCGATCTAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AAAATGAAAT-TGAAAATTGAAACTG--------------------------------------A--------------------------------------------------------------CTG---------------A---G-AGACAACTTAGATTGACAAA-GAAAACT-----------GAAGACACAT------------------------------------------------------------------------------------------------------------------------ATGACT--------TACAATTTC-----------------------------------------------AAAATCAT------------------ATG-TCG---------------------C-------------------ATTTTTATAC-------CC-----TTGC------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAG--TGAAGGAGACATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGGATCACCTCCTGAGTCGATATAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTGCAACGCAG--TGAAGGA...................................................................23200.459090000
droBip1
TTGATAAATGCGCAACATTATTACAAACGTT--------GTCA----------TCA---GGGTACAGAATA----------AATGTGG-------------------------------------AAAAGTATA-----------GAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGCTAGATACTGCC--------AGGGAGC-----------------------------------------------TAACAATCAC------------------ATATTTA---------------------TAT--------------------GTAATAC-------CC-----TTGC------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAG--TGAAGGAGACATCTCCGACCCTATAAAGTATATATATTC---TTGATCAGGATCACCTCCTGAGTTGATATGAGSizeHit CountTotal NormTotal
No Reads
droKik1
TGACT--------GAAATTATAATA--CCCT--------GCAA----------GGGTAT---AATAA-ATA----------AATAACA--------------------------------------AAATTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAATTTTTTTTATTTA-----TTTTTTGTAATAACATACTTTG------TAA----------AATATTTATAC-------CC-----TTG--------------CAGGGTATTATAATTTTAGTCA-------GAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCAACAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droFic1
AACATGCC----CTAAATATCAAAGAACATC--------GGAA----------AGG---AAACAAAGTAAA----------ATCGAAA--------------------------------------TTCGCCCA-----------ATAA------------------------------------------------------------------------------------------------------------------------------------------GTTCATTTATATTTCTTCTTTCGGGGATTTCACATTTCG--------TTGGGTT-----------------------------------------------TTGCTCAC-------------------------------------------------------AC-AT-------TGTTGTTATAC-------CC-----TTGC------AGAGCAAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG--TGAAGGAGACACCTCAGACCCCATAAAGTATATATATTC---TTGATCAGCATCACCATCTGAATCGAAATATGSizeHit CountTotal NormTotal
No Reads
droEle1
TCAAAGATAT-ATGGAGTA---ATAAAAATA--------TAAA----------AAA---GTGCAAATCAAAAAA------------------------------------------------------AGAT-------------------------TTTAAAA--------------------------TAAAAACTAT-----------ACAACTAGGAAAAAAGACGTATCAATTTGAAATGCAGTTCAAAAT-------------------------------GTT------------------------------------------------------------------------------------------------------------------------------GAT-TTT---------------------T-------------------ATTTTTATAC-------CC-----TTGC------------AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG--TGAAGGAGACATCTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCACTAGGCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droRho1
TGACC--------AAAATTATAATACCCTCT--------GCAA----------GGGTAT---AAAAACAA------------TAAAGC--------------------------------------TAA--------------------GT---------CGATTTTCAGATAAAATGTTGGATCA-----------TTC----ATTTCTGAAAAATTCAA------------------------------------------------------------------------------------------------------------------ATAGTTTC------------------------------------------------------------------------------------------------------------AA-AATTTCCAGGCTTGTTATA-------CCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCATGCA-------AAAGTATGTAACAGGT--AGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTC---TTGTTCAGGATCACTAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droBia1
AAAATAATAA---GAAAA------------C--------TCAAG---------GCG---GCGTAAAG-AAA----------AGAAGAA--------------------------------------AAAGATCTGAATCCCACCG---CAC--------------------------------------CTAAATGCCCT-----------GC-------------------------------------------------------------------------------------------------------------AATCAGGTAGATCGAGATTTC--------------------A-----------------ATATCTC----------------------------TCCTTTT---------------------G-------------------ATTTGTATAC-------CC-----TTGC------------AGAGGGTATAATGATTTCAGTCA-------AAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCGTCACAAGTCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droTak1
TCAAAAATCA-TTGTAGTAATAATC--TCAT--------GC---ATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACGATTAGTCGATATAAAATTAGAAACGGACAC----------------------TCATAGATAATGATTCA--------TAC--TTTT--------------------AATACTTTCATTTAAACAATATCTT----------------------------TATTTTA---------------------TATTTGTAA-AA-------AATTATTATA-------CCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGGG--AGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGGATCACTAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droEug1
CGAAGACTTTGACTATAATATTATAAACGCCCCAGATTTTTTT----------TCC---GCGGAAAACTAAAAAAGGTAAGATTCTAG-GAACTATAAGCTCTATTGGCTTCAGATTAAACGTGTACACTTATA-----------A-----------------------------------------------------------TTTT-----------------------------TGAG-----------------------------------------------------------------------------------A--------TGCA-------------------------------------------------------------------------------------------------------------------------------------AATTCAGCACCCGTTACTCGT------AGAGTAAAAGGGTATATTAGATTCGTTGA-------AAAGTATGTAATAGAT--AGAAGGAAGCGTTTGCGACCCTATAAAGTATATATATTC---TTGATCAGGATCAATAGCGAAGTCGATTGAGCSizeHit CountTotal NormTotal
No Reads
dm3
TCGATGTATAATTTGGTTATCAAGAGATTTT--------ACAAA---------ATG--------TCATAAA----------AAGAATA--------------------------------------AAAGCTTG-----------AAAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATA-------TAGA--------CTA---------------------------------------------------------------------------------------------------------------------------------------AT-------CC-----AAGC-AGATCT--A-TACAAAATATACTAGATTCGTTGC-------AAAGTATGTAACAGGTTTAACAGGAATCGTTTCCGACCATGTAAGGTACATACATACATATTGATCAGGATCAATAGCCGAGTCGATCTGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............TGGTTATCAAGAGATTTT--------ACAAA---------ATG--------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271123.00123000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000020100000000011000000000000010000000000000000000000000000000000000000000000000000000000000000000200000001900002011000000000000022218000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTTTAACAGGAATCGTTTCC..........................................................26190.009000000000000000000000000000000000000000001000000101100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000202001000000000000000000000000000000000000001000000000000000000400001000002000000000000000000000000000000000000000000000000000000000000000000000010000500002000000000000000000026200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACAGGAATCGTTTCCGACCATG...................................................26162.006200000000000000000000000000000000000000000001000201010000000000000000000000000232200000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000030002000002000100000000000000000000000000000000000000000000000000000000000000000012000900001000000000000000000002500000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGAATCGTTTCCGACCATG...................................................24156.005600000000000000000000000000000000000001000001000010011000000000000000000000000200200000000000000000000000000000000000000000000000000010000100000020000121000000000000000000000000000000000000000000000000000010000500000001002020000000000000000000000000000000000000000000000000000000000000000000002010700001200000000000000000001500000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAGGAATCGTTTCCGACCATG...................................................25139.003900000000000000000000000000000000000001000000001100000000000000000000000000000021100000000000000000000000000000000000000000000000000000000000011001000010000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000001700000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCATGTAAGGTACATACATACA..................................27139.003900000000000000000000000000000000000000000000000000000000000000000000000000000711370000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000601030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACATACATATTGATCAGGAT.....................25132.00320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000003010200000000000000000603100000000000000000000000000000000000000000000000000000000000000000000100020000001000000000100000000900000
...........TTTGGTTATCAAGAGATTTT--------ACAAA---------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.00300000000000000000000000000000000000000000000000000000000000000000000000000000067230000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010500000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACATACATATTGATCAGGATC....................26128.002800000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000020000000000000000000101121100000000000000000000000000000000000000000000000000000000000000000001000300000000000000000000000101000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACATATTGATCAGGATCAAT.................25127.002700000000000000000000000000000000000000101000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000010201600000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTTTAACAGGAATCGTT.............................................................27127.002700000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000200000000401000000000000000000000000000000000000000000000000000000000000000000000000000200002000000000000000000001300000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTGATCAGGATCAATAGCCGAG..........28125.002500000000000000000000000100000000000000012000000000000000000000000000000000000300100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001011000000
.............TGGTTATCAAGAGATTTT--------ACAAA---------ATG--------TC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28124.002400000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000010000000000000001900000
..................................................................................................................................................AAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATA-------TAGA--------CTA---------------------------------------------------------------------------------------------------------------------------------------AT-------CC-----AAGC-AGA..................................................................................................................................29124.002400000000000000000000000000000000000000000000000000000000000000000000000000000247100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--A-TACAAAATATACTAGATTCGTTGC-------............................................................................................28123.00230000000000000000000000000000000000000000000000000000000000000000000000000000025560000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTTTAACAGGAATCGTT.............................................................25122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000001000000000000000000000000002000001000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000011200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACATACATATTGATCAGGATCAA..................28121.00210000000000000000000000000000000000000000000000000000000000000000000000000000073030000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000400000
............TTGGTTATCAAGAGATTTT--------ACAAA---------ATG--------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000001001400000
..................................................................................................................................................................................................................................................................................................................................TAGA--------CTA---------------------------------------------------------------------------------------------------------------------------------------AT-------CC-----AAGC-AGATCT--A-TACAAAA....................................................................................................................29120.00200000000000000000000000000000000000000000000000000000000000000000000000000000056360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TA-------TAGA--------CTA---------------------------------------------------------------------------------------------------------------------------------------AT-------CC-----AAGC-AGATCT--A-TA.........................................................................................................................26119.00190000000000000000000000000000000000000000000000000000000000000000000000000000063350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCGATGTATAATTTGGTTATCAAGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27118.00180000000000000000000000000000000000000000000000000000000000000000000000000000012120000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000070000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTTTAACAGGAATCGTTTCCGAC.......................................................29118.00180000000000000000000000000000000000000000000000000000000000000000000000000000065230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TA--------------------------------------AAAGCTTG-----------AAAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATA-------TAGA--------C...................................................................................................................................................................................................................................................................................................27115.00150000000000000000000000000000000000000000000000000000000000000000000000000000064130000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAATATACTAGATTCGTTGC-------A...........................................................................................25114.00140000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000001000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000
........TAATTTGGTTATCAAGAGATTTT--------ACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26114.00140000000000000000000000000000000000000000100000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000500000
.............TGGTTATCAAGAGATTTT--------ACAAA---------ATG--------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26114.00140000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000300000000000000000000700000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAATCGTTTCCGACCATGTAAGG..............................................26114.00140000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000030103000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
.........................................................................................................................................................................................................................................................................................................................TA-------TAGA--------CTA---------------------------------------------------------------------------------------------------------------------------------------AT-------CC-----AAGC-AGATCT--A-TACA.......................................................................................................................28113.00130000000000000000000000000000000000000000000000000000000000000000000000000000034410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TATA-------TAGA--------CTA---------------------------------------------------------------------------------------------------------------------------------------AT-------CC-----AAGC-AGATCT--A-...........................................................................................................................26113.00130000000000000000000000000000000000000000000000000000000000000000000000000000033110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--A-TACAAAATATACTAGATTCGTTGC-------A...........................................................................................29113.00130000000000000000000000000000000000000000000000000000000000000000000000000000013440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACATATTGATCAGGATCAATAGC..............28113.00130100000000000000000000000000000000000000000000000000000000000000000000000000015020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGTACATACATACATATTGATCAGGA......................29113.00130000000000000000000000000000000000000000000000000000000000000000000000000000033340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TTTGAGAAAG-CAAAAACTAAAATAGAAAT--------------------------------------------------------------------------------------------------ATAT-------------------------TTTAAAAGTGTCAA-GTGCAT-----------GAAAAAACTAT-----------TT-------------------------------------------------------------------------------------------------------------GATT--------AAAAATAACGAAACTATATCTATTTTTAT-----------------------------------ACCCGCT----------------------------------------------------------TCCTTTTATA-------CCTGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGC--AGAAGGAAGCGTTCCCGACTATATAGAGTATACATATTC---TTGATCAGGATCAAGAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGC--AGAAGGA...................................................................26205.501100000004406600000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAGAGCCGAGTCGAT.....2232.00600000050100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGA-------AAAG........................................................................................29201.95390000002019000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC--AGAAGGAA..................................................................25201.6533000000000330000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC--..........................................................................24201.6032000000000001031000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGA-------AAAG........................................................................................24201.5030000000030000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAAGAGCCGAGTCGA......2621.00200000000000011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATACATATTC---TTGATCAGGATC....................2611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTATACTAGATT.........................................................................................................24201.0020000000000020000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAAGAGCCGAGTCGATC....2421.00200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC--AGAAGGAAGCGTT.............................................................16200.9519000000000019000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGA-------A...........................................................................................25200.8517000000170000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC--AGA.......................................................................27200.851700290000002004000
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGC--AGAAGGAA..................................................................27200.701400000024080000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAGAGCCGAGTCG.......2030.67200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGCCGAGT.........2630.67200010000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGC--A.........................................................................24200.6513000000020000110000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGC..............2180.63500000000005000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC--AGAAGGAAGCGT..............................................................16200.6012000000000012000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGA-------............................................................................................25200.551100000009020000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAAGAGC..............1980.50400000000004000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGC--..........................................................................23200.501000000070030000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAGAGCCGAGTCGATCT...2420.50100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC---TTGATCAGGATCAAGAGCCGAGTC........2820.50100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGCCGAGTC........2720.50100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAG............................................................................................................24200.5010000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTTGA-------A...........................................................................................28200.501000000090000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTA.............................................................................................................23200.45900000000009000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGA-------A...........................................................................................26200.45900000000000090000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC--AG........................................................................26200.45900010005001002000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGA-------AAAGTATGTAACAGGC--AGA.......................................................................24200.45900000033300000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGA-------AAAG........................................................................................27200.45900000072000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC--AGAA......................................................................28200.45900010010600010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAAGAGC..............1690.44400000000004000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGC--AGA.......................................................................26200.40800000000070001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC--A.........................................................................25200.40800000080000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGGATCAAGAGC..............2080.38300000000003000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGA-------AAAG........................................................................................28200.35700000034000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGCCGA...........2430.33100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTTGA-------AA..........................................................................................29200.30600000042000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTC---TTGATCAGGAT.....................20100.30300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGA-------AAAG........................................................................................26200.30600000000006000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGA................1980.25200000001100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAAGAGCCGA...........1840.25101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGATCAAGAGC..............2380.25200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGGATCAAGA................1890.22200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAGA...........................................................................................................25200.20400000000020020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGA-------AA..........................................................................................27200.20400000000004000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTATACT..............................................................................................................19200.20400000000004000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGC--AG........................................................................25200.20400000000000040000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAGATT.........................................................................................................27200.20400000000004000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGA-------AAAGTAT.....................................................................................21200.15300000000201000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGC--AGAAGGAAGCGT..............................................................24200.15300010020000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGA-------AAAGT.......................................................................................27200.15300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGA-------AAAGTATGTAACAGGC--AGA.......................................................................25200.15300000000300000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGC--AGAAGGAA..................................................................22200.15300000000102000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGA-------AA..........................................................................................26200.15300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGA.......................................................................16200.15300000000003000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGA-------AAAGT.......................................................................................21200.15300300000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATATTC---TTGATCAGGAT.....................2270.14100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAAGAGCCGAGTCGATCTAC.2570.14100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGATCAAGA................2180.13100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAAGAGC..............1780.13100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAG...............2080.13100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CCTGTTACTCGT------AGAGTAAA........................................................................................................................2180.13100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAAGAGC..............1880.13100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-------CCTGTTACTCGT------AGAGTA..........................................................................................................................2180.13100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGC--AGAAGGA...................................................................30200.10200000020000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGA-------AAAG........................................................................................21200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTC---TTGATCAGGA......................19100.10100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAA..................15200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGT------AGAGTAAAAGGGTATACTAG............................................................................................................27200.10200000000000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACAGGC--AGAAGGA...................................................................27200.10200000002000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAAAGGGTATACTAG............................................................................................................19200.10200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGA-------AA..........................................................................................25200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC--AGAAGG....................................................................23200.10200020000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC--AGAAGGA...................................................................31200.10200000020000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG....................................................................................................24200.10200000000000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGT......................................................................................................19200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGC--AGAAGGA...................................................................23200.10200000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAAGAGC..............15110.09100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAAG.................16120.08100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC--AGAAG.....................................................................22200.05100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG..............................................................................22200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGTTGA-------AAAGTATGTAACAGGC--..........................................................................27200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGA-------AAAGTATGTAACAGGC--AGAAGGA...................................................................29200.05100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGC--AGAAGGA...................................................................22200.05100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGC--AGAAGGAA..................................................................24200.05100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAAGCGT..............................................................25200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGATC....................17200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGGGTATACTAGATTCGTTGA-------............................................................................................26200.05100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGC--AGAC......................................................................28200.05100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAAGCGTT.............................................................23200.05100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC--AGAAGGAAGCGTT.............................................................30200.05100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGA-------AAA.........................................................................................27200.05100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGAT.....................16200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGA-------AAAGTATGTAACAGGC--AGAAG.....................................................................26200.05100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGA-------AAAGTA......................................................................................29200.05100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGA-------AA..........................................................................................24200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGA..............21200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAAAGGGTATACTAGATTCGTT.....................................................................................................26200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTG....................................................................................................22200.05100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------AGAGTAAAAGGGTATACTA.............................................................................................................21200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAA..................................................................21200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC--AGAAGGAAGCGTT.............................................................21200.05100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC--AGA.......................................................................20200.05100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTA..................................................................................................................15200.05100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGA-------AAAGTATGTAACAGGC--AGAAGGAA..................................................................29200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGA-------AAA.........................................................................................28200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGA-------AAAGTA......................................................................................31200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC--AGAAGGAAG.................................................................26200.05100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAGATA.........................................................................................................27200.05100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGA-------A...........................................................................................24200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGA...................................................................20200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT------AGAGTAAAAGGGTATACTAGATT.........................................................................................................26200.05100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGC--AGAAGGAAGCGTT.............................................................20200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTATACTAGATTCGT......................................................................................................27200.05100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGA-------............................................................................................21200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT------AGAGTAAAAGGGTATACTAGA...........................................................................................................24200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTC---TTGATCAGGATC....................18200.05100000000001000000
droSec2
AAA------------------------CGCG--------ACAA----------TCG---GAACAGAAAACA----------GTAAATC--------------------------------------AAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG--------------------AAAATTTAAATTTAAAAAAATTATTTCCTTCATAT------------------AT---AA---------------------ATGATAACA-CA------TGTTATTTATA-------CCCGTTACTTGT------AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACTGGT--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCACGATCAATAGCCGAGGCGATCCAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACTGGT--AGA.......................................................................2711.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACTGG.............................................................................2360.1711000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAAC................................................................................20200.0511000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGA-------AAAGT.......................................................................................21200.0510010
droYak3
TGCAAAATAA-TTAAAAGGTCAAG---------------TGAAC-CGGTGCAGGCC---GT-TAATGTGAA----------CATCAGC--------------------------------------AAAAACCA-----------AACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA-------AGTGCT--------CGCAAC------------------------------------------------TCATTCATAC------------------GTTTATA-TATATGCATACTCCACTTAG------TGT----------ATTTTTTATA-------CCCGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGC--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCAGGATCAATAGCCGAGTCGATCTGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAAGCGTTTCCG.........................................................27203.0060000000000060
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGC--AGAAGGAAGCGT..............................................................21200.501000200080000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--AGAAGGAAGCGTTTCCGACCATAT..................................................26200.45900900000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGGATCAATAGCCG............27200.35707000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAATAGCCGAGTCGAT.....28200.20400000000004
..................................................................GTGAA----------CATCAGC--------------------------------------AAAAACCA-----------AACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24180.17303000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------ATTTTTTATA-------CCCGTTACTCGT------AGAG............................................................................................................................27200.10202000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TAC------------------GTTTATA-TATATGCATACTCCACT.........................................................................................................................................................................................27100.10101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAATAGCCG............21200.10202000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGA-------AAAGT.......................................................................................23200.10220000000000
..................................................................GTGAA----------CATCAGC--------------------------------------AAAAACCA-----------AACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................26170.06101000000000
.....................................................................AA----------CATCAGC--------------------------------------AAAAACCA-----------AACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA-------..................................................................................................................................................................................................................................................................................................................27170.06101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATC....19200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCG............20200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGC--AGAA......................................................................20200.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGC--AGAAGGAAGCGTTTCCG.........................................................24200.05100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------AGAGTAAAAGGGTATACTA.............................................................................................................21200.05100000010000
droEre2
AGGAAGGTTA----ATTTAAAAATAAACATG--------TAAA----------GCT---GCGTAAATC------------------------------------------------------------------------------------------------TTTCAGGT---TTGTTAGAACGTAAGAATAATTTTC----ATAATCTAAAACTACAA------------------------------------------------------------------------------------------------------------------ATAAAT------------------------------------------------CCATCAAAT------------------T---TAA---------------------TTTAAATCA-AA-------TTTATTTATA-------CCCGATACTCGT------AGAGTAAAAGAGTGTACTAGATTCGTTGA-------AAAGTATGTAACAGGC--AGAAGGAATCGTTTCCGACCATATAA---------ATTC---TTGATCATGATCAATGGCCGAGTCGATTTGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA-------CCCGATACTCGT------AGAGT...........................................................................................................................2190.1110000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATTCGTTGA-------AA..........................................................................................18200.0511000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATTCGTTGA-------AAA.........................................................................................19200.0510001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATTCGTTGA-------AAAGT.......................................................................................21200.0510000010

Generated: 06/08/2015 at 04:37 PM