ID:

dpe_1752

 Coordinate:

scaffold_5:1985915-1986188 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL25755-cds]; exon [dper_GLEANR_8318:10]; exon [dper_GLEANR_8318:9]; CDS [Dper\GL25755-cds]; intron [Dper\GL25755-in]

Repeatable elements

NameClassFamilyStrand
(TTGG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCTGACCACGGACCACACCAGAGAGGGTGCCCACTGTGAAGATAGCGAGGTAAGGAGAACATCCCCACAACTCAGACACATCCCATACAACATCCACAATCCAAAAAACAATTAACACTAGAATCCACACTTGTGACTAACACTTAATCGCCACAGCGACAGGCAACAACTAATCCACTTTGTTACCATCTTCCCACTATCCAAAAACCGACAACACAACACAAACAACACAACCAACCAAACAACCAACCAAACAACCAACCAAACAACCAACCAAACAACAGCCTGTACCAACCGAACCCGTACCCGTACCCACAGTACAGTGTGCACCAGAAATAGTGGCTGAACCAAGAACCACAACCACATTGGGAAC
**************************************************....(((((.........................................................(((.((........)).)))............((((....))))..((.(((((..........))))).)).)))))............................................................................................((((((.......((........)).......))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V111
male body
................................CACTGTGAAGATAGCGAG.................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0
.....................................................................................................................................................................................................................................................................AAGAAACAACCAACCAAACAACA.......................................................................................... 23 2 2 0.50 1 0 0 1
.......................................................................................................................................................................................................................................................................GAAACAACCAACCAAACAACA.......................................................................................... 21 1 2 0.50 1 1 0 0
...........................................................................................................................................................................................................................................................GAAACAACCAACCAAACAACAAAACA................................................................................................. 26 3 8 0.25 2 2 0 0
.............................................................................................................................................................................................................................................................AACAACCAACCAAACAACAAAGC.................................................................................................. 23 2 4 0.25 1 1 0 0
.................................................................................................................................................................................................................................................AACAACCAACCAAACAACAAA................................................................................................................ 21 1 4 0.25 1 1 0 0
.............................................................................................................................................................................................................................................................AACAACCAACCAAACAACAAA.................................................................................................... 21 1 4 0.25 1 1 0 0
...............................................................................................................................................................................................................................................GAAACAACCAACCAAACAACAAAACA............................................................................................................. 26 3 8 0.25 2 2 0 0
.................................................................................................................................................................................................................................................AACAACCAACCAAACAACAAAGC.............................................................................................................. 23 2 4 0.25 1 1 0 0
...............................................................................................................................................................................................................................................GAAACAACCAACCAAACAACAAA................................................................................................................ 23 2 5 0.20 1 1 0 0
............................................................................................................................................................................................................................................AAAGAAACAACCAACCAAACAAC................................................................................................................... 23 2 5 0.20 1 1 0 0
...........................................................................................................................................................................................................................................................GAAACAACCAACCAAACAACAAA.................................................................................................... 23 2 5 0.20 1 1 0 0
........................................................................................................................................................................................................................................................AAAGAAACAACCAACCAAACAAC....................................................................................................... 23 2 5 0.20 1 1 0 0
....................................................................................................................................................................................................................................................................AAAGAAACAACCAACCAAACAAC........................................................................................... 23 2 5 0.20 1 1 0 0
..............................................................................................................................................................................................................................................................ACAACCAACCAAACAACAAAACAAT............................................................................................... 25 3 12 0.08 1 1 0 0
..................................................................................................................................................................................................................................................ACAACCAACCAAACAACAAAACAAT........................................................................................................... 25 3 12 0.08 1 1 0 0
......................................................................................................................................................................................................................................ACAACCAACCAAACAACAAAACAAT....................................................................................................................... 25 3 12 0.08 1 1 0 0
......................................................................................................................................................................................................................................ACAACCAACCAAACAACAA............................................................................................................................. 19 1 13 0.08 1 1 0 0
..........................................................................................................................................................................................................................................................................ACAACCAACCAAACAACAA......................................................................................... 19 1 13 0.08 1 1 0 0
..............................................................................................................................................................................................................................................................ACAACCAACCAAACAACAA..................................................................................................... 19 1 13 0.08 1 1 0 0
..................................................................................................................................................................................................................................................ACAACCAACCAAACAACAA................................................................................................................. 19 1 13 0.08 1 1 0 0
..................................................................................................................................................................................................................................................................................ACAAACGACCGCCTGTACC................................................................................. 19 3 16 0.06 1 0 1 0

Anti-sense strand reads

CGGACTGGTGCCTGGTGTGGTCTCTCCCACGGGTGACACTTCTATCGCTCCATTCCTCTTGTAGGGGTGTTGAGTCTGTGTAGGGTATGTTGTAGGTGTTAGGTTTTTTGTTAATTGTGATCTTAGGTGTGAACACTGATTGTGAATTAGCGGTGTCGCTGTCCGTTGTTGATTAGGTGAAACAATGGTAGAAGGGTGATAGGTTTTTGGCTGTTGTGTTGTGTTTGTTGTGTTGGTTGGTTTGTTGGTTGGTTTGTTGGTTGGTTTGTTGGTTGGTTTGTTGTCGGACATGGTTGGCTTGGGCATGGGCATGGGTGTCATGTCACACGTGGTCTTTATCACCGACTTGGTTCTTGGTGTTGGTGTAACCCTTG
**************************************************....(((((.........................................................(((.((........)).)))............((((....))))..((.(((((..........))))).)).)))))............................................................................................((((((.......((........)).......))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V057
head
 V042
embryo
 V050
head
 M042
female body
.............................................................................................................................................................................................................GTTGGCTGCTGTCTTGTGTTTGTTGT............................................................................................................................................... 26 3 1 1.00 1 0 0 1 0 0
....................TCTCTCCTACGTCTGACACTTC............................................................................................................................................................................................................................................................................................................................................ 22 3 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................TGATGGGTTGTGTGTGTTGTGTTG........................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................................................................TGTTGTGTTGTGTTTGGTGGGTG............................................................................................................................................ 23 3 4 0.50 2 0 2 0 0 0
.................................................................................................................................................................................................................................TGTTGTGTTGGGTGGTGTGTCGGT............................................................................................................................. 24 3 2 0.50 1 0 0 0 1 0
.................................TGACACTTCTATCTCTACATTCT.............................................................................................................................................................................................................................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................................................................................TGTTGGGTGTGTTGGTTGGGTTG.................................................................................................................................. 23 3 6 0.33 2 2 0 0 0 0
...............................................................................................................................................................................................................................TTTGTGGTGTTGGGTGGTTT................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 1
...........................................................................................................................................................................................................................TGTGTTGGTTGTGTTGGTGGGTT.................................................................................................................................... 23 2 3 0.33 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................TTTGTTGGTTGGTTTGTTGTT......................................................................................... 21 1 4 0.25 1 1 0 0 0 0
............................................................................................................................................................................................................................................................TTTGTTGGTTGGTTTGTTGTT..................................................................................................... 21 1 4 0.25 1 1 0 0 0 0
................................................................................................................................................................................................................................................TTTGTTGGTTGGTTTGTTGTT................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................................................................................TGTTTGTTGTGTTGGTTC....................................................................................................................................... 18 1 4 0.25 1 0 0 0 1 0
......................................................................................................................................................................................................................................................GGGTGGTTTGTTGGTGGGTTTG.......................................................................................................... 22 2 5 0.20 1 1 0 0 0 0
.........................................................................................................................................................................................TGGTAGATGGGTGACAGGAT......................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0
..........................................................................................................................................................................................................................................GGGTGGTTTGTTGGTGGGTTTG...................................................................................................................... 22 2 5 0.20 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................GGGTGGTTTGTTGGTGGGTTTG.............................................................................................. 22 2 5 0.20 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................GGTTTGTTGGTGGGTTTGTGGGGT.................................................................................................... 24 3 6 0.17 1 1 0 0 0 0
..............................................................................................................................................................................................................................................GGTTTGTTGGTGGGTTTGTGGGGT................................................................................................................ 24 3 6 0.17 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................GGTCCATGGTGCTGGTGTAAC..... 21 3 6 0.17 1 0 1 0 0 0
...........................................................................................................................................................................................................................TGTGCTTGTTGTGTTCGTTGCTT.................................................................................................................................... 23 3 6 0.17 1 0 1 0 0 0
.GGTCTGCTGCCTAGTGTGG.................................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.15 3 3 0 0 0 0
..............................................................................................................................................................................................................TTGGCTGTTCTGTCGTGTTTTT.................................................................................................................................................. 22 3 7 0.14 1 0 1 0 0 0
.............................................................................................................................................................................................................................................TTGTGTGTTGGTTGGTTTGTGGGTTG............................................................................................................... 26 3 7 0.14 1 1 0 0 0 0
.................................................................................................................................................................................................................................TTGTGTGTTGGTTGGTTTGTGGGTTG........................................................................................................................... 26 3 7 0.14 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................TTGTGTGTTGGTTGGTTTGTGGGTTG................................................................................................... 26 3 7 0.14 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTGGCTTGGGCACGGGGGTGG............................................................ 21 3 11 0.09 1 0 1 0 0 0
................................................................................................................................................................................................................................TAGTGGTGTTGGTTGGGTTGT................................................................................................................................. 21 3 11 0.09 1 1 0 0 0 0
....................................................................................................................................................................................................................................TGTGTTGATTGGTTTGACGGT............................................................................................................................. 21 3 13 0.08 1 0 1 0 0 0
...............................................................................................................................................................................................................................TGGGTTGTGTTGGTTGGTTT................................................................................................................................... 20 2 13 0.08 1 1 0 0 0 0
.....................................................................................................................TCATCATAGGTGTGAACAGT............................................................................................................................................................................................................................................. 20 3 14 0.07 1 0 0 1 0 0
...................................................................................................................................................................................................................................AGGTGTTGGTTGGGTTGTTGG.............................................................................................................................. 21 3 15 0.07 1 0 0 0 0 1
................................................................................................................................................................................................................................................................TTGGTCGGTTTCTTGGATGGT................................................................................................. 21 3 19 0.05 1 0 1 0 0 0
........................................................................................................................................................................................................................................TTGGTCGGTTTCTTGGATGGT......................................................................................................................... 21 3 19 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................................................................TTGGTCGGTTTCTTGGATGGT............................................................................................................. 21 3 19 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................TGGATGGTTTGTGGGTTG................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................................TGGATGGTTTGTGGGTTG........................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................GCTTGGGCACAGGGATGG............................................................ 18 3 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................GTTGGTTGGTTTGTTGTTT.................................................................................................... 19 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................................GTTGGTTGGTTTGTTGTTT............................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................................................GTTGGTTGGTTTGTTGTTT................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................TGGATGGTTTGTGGGTTG............................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................GGTACTTGGTGGTGGTGT........ 18 2 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_5:1985865-1986238 - dpe_1752 GCCTGACCACGGACCACACCAGAGAGGGTGC---CCACTGTGAAGATAGCGAGGTAAGGAGA---AC---AT---CC-----CC---ACAA----CTCAG--ACACATCCCATACAACATCCACAAT----------------------CCAAAAAACAATTAACACTAGA-------------A------------------------------------------------TC-CA-CACTTGTGACTAACACTTAATCGCCACA-GC-------GACA-GGCA----AC-AACTAATCCACTTTGTTACCATCTTCC-CACTA---TCCAAAAAC----------------C-----------------GAC---AACACAACACAAACAA----CACAAC-CA-A------C---CAAACAACCAACCAAACAACCAACCAAAC-AACC--------------AACCAAACAACAGCCTGTACCAACCGAACCCGTACCCGTACCCACAGTACAGTGTGCACCAGAAATA------GTGGCTGAACCA---------AGAACCACAA------CCAC------------------------------------------------ATTGGGAAC--
dp5 4_group1:3236312-3236674 + GCCTGACCACGGATCACACCAGAGAGGGTGC---CCACTGTGAAGATAGCGAGGTAAGGAGA---AC---AT---CC-----CC---ACAA----CTCAG--ACACATCCCATACAACATCCACAAT----------------------CCAAGAAACAATTAACACTAGA-------------A------------------------------------------------TC-CA-CACTTGTGACTAACACTTAATCGCCACA-GC-------GACA-GGCA----AC-AACTAATCCACTTTGTTACCATCTTCC-CACTA---TCCAAAAAC----------------C----------GACA--ACAC---AACACAACACAAACAA----CACAAC-CA-A------C---CAAACAAC----------------CAAAC-AACC--------------AACCAAACAACAGCCTGTACAAACCGAACCCGTACCCGTACCCACAGTACAGTGTGCACCAGAAATA------GTGGCTGAACCA---------AGAACCACAA------CCAC------------------------------------------------ATTGGAAAC--
droWil2 scf2_1100000004577:2962501-2962771 - GGCTAACAAACGA---TTCTCGTGATGATGC---TGACTGTGAAGATAGCGAAGTAAGTTCA-AATT---AT---TT-----CT---TCAA----TACAA--ATGCATTTAGA---A---------TGAAACAAAAACCACACA-CAAATTA----------AAAAATGG--A----AATTTTTA------------------------------------------------AG-----ATACGTAACTAACACT-AATC----------------------------------------------ATAAACATTTTCC--AACA---CACCCG-------------------------------------------------------------------------------AC---CAACCAAC----------------CAAATCAACCAATAAAATCGAAACCCCCCAGAATGTACCTG------------------------------TACAGTGTGCACAACCAATA------ACGACTGAAACAAC------------------------------A---------------GCAGC---------------------------TACAAC--
droVir3 scaffold_12723:2491004-2491293 - dvi_1366 GGCTGACGACAGG---TTCGAAAGAGGACGC---TGCATGCCAAGATAGCGAGGTAAGCCCT---GCTTT------GTT------------CGTTTTTGG--A-------------A-----------------------T-CG-TA-----------AGATA--GCTAGATA----TATAACTGAGCGCAGCTTTTACCGAAATTGTGGCAAAACATATAGTACACTGTGCAACAAA-TATCTGTGACTAACACT-AAATTAGACA-AA-------ACCAAAACA----AA-AACTAATACACTTTGTTACCATCTTCC--ACAA---CACA------------------------------------------------------------------ACATCA----------------------------------------------CA--------------ACCAAA------GCCTG------------------------------TTCAGTGCCCACCACATATT------ATGGTTGAACCAAAC---ACAA------CAA---------------------------------------------------------------------
droMoj3 scaffold_6500:15676534-15676837 - GCCTGACCACGGG---ATCGAAGGAGGACGC---TGCCTGCCAGGACAGTGAGGTAGATAGCTCTGCT---T----GTT------------TATA-TTTG--A-------------A-----------------------T--A-TT-----------GATTGTCTGTAGACG----AGAGAG------CAACT--------------------------------CTATGTATAAAA-TATCTGTGACTAACACT-TA-AACTAAA-GA-------AATA--CCA----AA-AACTAATACACTTTGTTACCATCTTCC--GCAA---CACAAAAACAAAAA----------CC-AAA--CAAT-----ACAAA---AAAAAAAA------------------ACA-AAAACA-------------------------------------------------------AAAA------GCCTG------------------------------TTCAGAGCCCACCACAAATA------ATGGTTGATACAGACACAACAAGA------ATCACATCTAC------------------------------------------------AACAACAAC--
droGri2 scaffold_15126:7463387-7463660 + GCCTGACGAGAGG---CTCCAAGGAGGATGC---CGGCTGCCAAGATAGCGAGGTAAGTAGA-CACC-----------AAC----------AAAT-TTA-----------------G-----------------------CTTC-TA-----------CAATCATGAGATATG----AATTTATA------------------------------------------------TA-CACTACCTGTGACTAACACTAAATTAGAGCA-AAAACCGAAACCAAAACAAAACAA-AACTAATACACTTTGTTACCATCTTCC--ACAAACACACA------------------------------------------------------------------ACATCACA-AC------------------------------------------------------------CAAAAAAAAGCCTG------------------------------TTAAGTGCGCACCACAAATA------ATGGTTGATACAAAC---ACAA------CAA------CAAC------------------------------------------------AAAAACAAC--
droAna3 scaffold_12916:1220522-1220818 + GGCTGACCACGGA---TTCCAGAGAGGGTGC---CGACTGCGAAGATAGCGAGGTATGATCG----TTGT-----GT---CCCAA------CTAC-CAAG--T-------------G-----------------------CC-----------------AATAGTATAAGAAG----TATTTGTA------------------------------------------------A------AATTGTGACTAACACT-AATCACCACA-GT-------GGCA-GACA----AA-AACTAATCCTCTTTGTTACCATCTTCC--ACTA---TCCCGAAAAATAA------TAAA-TG--AAC-AAAT-----CAAAC---CACACAACACAAACAA----CACTCCACA-ACTACA-------------------------------------------------------CCCA---------------------------------------------GCCTGCACCACAAGTGCACCACAAGGCTGCAACTTCA---ACAAGA------ACCACAGTCACGGCC---------------------------------------------------AC--
droBip1 scf7180000396554:1034125-1034423 - GCTTGACCACGGA---TTCCAGAGAGGGTGC---TGACTGTGAAGATAGCGAGGTATGATCA---------TTATAT---CCCAA------CTAC-AAAG--T-------------G-----------------------CT---CA--------------TATTATTAAATT----TATTTGTA------------------------------------------------AA-----AATTGTGACTAACACT-AATCACTACA-AT-------GGCA-GACA----AC-AACTAATCCTCTTTGTTACCATCTTCC--ACTA---TTCCAAAAAAATAA-TAA-TAAA-TG--AATAAAAA-----AAAAC---CACACAACACAAACAA----CACACCACA-A-----------------------------------------ACC--------------ACCC-A---------------------------------------------GCCTGCACCACAAATA------AAGGCTGCAACATCAACAGCCAGA------ACCACAGTCACGGCC---------------------------------------------------AC--
droKik1 scf7180000302473:974485-974794 - GCCTGACTACCGA---CTCCAGAGAGGGTGCCAATAATTGTGAGGATAGCGAGGTAAGAATC-GAAA---AT----GAAA-----------CCAATGCAA--A--------------------------------------CGC-TC-----------TCTTAACACTAGACCAAATAATTTGTA------------------------------------------------CG-----AATTGTGACTAACACT-AATCACCACAAAC-------AGCA-GACA----ACAAACTAATCCACTTTGTTACCATCTTCCACACTA---TCTTAAAACGAAAA--------A-CA--AA--A--CAAA--ACAAA---AACAAAACAATCACCA----CACACTACA-ACTACAAA-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------GTGGGTAAAACAGCA---ACCAGA------ACCACAACC------------------------------------------------------GTAGC--
droFic1 scf7180000453843:159759-160083 + GCTTGACCACAGA---CGCTCAACAAGGTGC---TGACTGTGAAGATAGCGAGGTAAGAAAT-TAGCGGG-T---TGATG-----------CAAC-ACAA--A-------------C-----------------------CCCCTCA-----------AATTAACACTAGATG----AACTGGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-GC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAACGAA-AAAAA-AATC----------GAAA-AAACA---AACACAACACAAACAA----CACAACACA---------------------------------------------------------------CAA---------------------------------------------GCCTGCACCACAAATA------ATGGCTGCAACAGCA---ACAAGA------ACCACTGCCACTGCC---GCAACC------ACA---------ACAGC---AACAACCACATCAGCGGC--
droEle1 scf7180000491046:1045641-1045967 - GCCTGACCACCGA---CGCTCGAGAGGGTGC---TGATTGTGAAGACAGCGAGGTAAGAAAT-TAGC---AT----GAAAC----------CCAC-TTAG--A-------------T-----------------------CCCCCTA-----------AATTAACACCAGACG----AACTTGTA------------------------------------------------TC-----AATTGTGACTAACACT-AATCACTACA-GC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCACAAAA---T--AAAAA-AATC----------GAAACAAAAACACAACACAACACAAACAA----CACAACACA-ACTACAA----------------------------------------------------ACCTAA---------------------------------------------GCCCGCACCACAAATA------ATGGCTGCAACAGCA---ACAAGA------ACCACTGCCACTGCC---------------------ACAACCACAGC---A---ACCACATCAGCGGC--
droRho1 scf7180000777994:20150-20470 - GCCTGACCACCGA---CGCTCGAGAAGGTGC---TGATTGTGAAGATAGCGAGGTAAGGAGT-TAGC---AC----GAGA-----------CCAC-TCA---A-------------G-----------------------CCCC-TA-----------AATTAACACTAGACG----AATTAGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-GC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAAT--ATATA-AACC----------GAA---ACAA---AACACAACACAAACAA----CACACCACA-ACTACAAA-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCCGCACCACAAATA------ATGGCTGCAACAGCA---ACAAGA------GCCACTGCCACAACC---------------ACAG------------C---A---ACCACATCAGCGGC--
droBia1 scf7180000302261:2010407-2010720 + GCCTGACCACCGA---CGCTCGGGAGGGCGC---TGATTGTGAAGACAGCGAGGTAAGGAAC-CAAC---TTTGCAG--------------CCCC-TTAG--A-------------A-----------------------GCCC-TC-----------AATTAACACTAGATA----AATTAGTA------------------------------------------------TA-----AGTTGTGACTAACACTTAATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAC------GA-AAAA-TG--AA--AAAC-----AAAAA---CACACAACACAAACAA----CACACCACA-ACTACAACCTAC---------------------------A-AACA--------------ACCCAA---------------------------------------------GCCTGCACCGCAAATT------ACGGGTGCCACAACA---ACAAGA------ACCACTGCCACAG---------------------------------C---G------------ACCACTT
droTak1 scf7180000415709:225358-225689 - GCCTGACCACCGA---CGCTCGAGAGGGTGC---TGATTGTGAAGATAGCGAGGTAAGAAAT-TAGC---ATTACGG---CCCA----------T-ATAAAAA--C----------A-----------------------CCCC-CT-----------AATTAACACTAGATA----GATTAGAA------------------------------------------------TA-CG--AATTGTGACTAACACTTGATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCCAAACAAAAT--GA-AAAA-TA--AACAACAA-----AAAAA---CACACAACACAAACAA----CACAACACAAACTACAAA-------------------------------C-AA------------------CCAA---------------------------------------------GCCTGCACCACAAATT------ATGGGTGCAACAGCA---ACAA------------CTGCCACAACC---------------ACAG------------CAACTACTACCACAACAGCGGC--
droEug1 scf7180000409452:1166498-1166821 - GCCTGACCACCGA---CGCTCGAGAAGGTAC---CGATTGTGAAGATAGCGAGGTAAGAAAT-TAGC---AT----GAAA-----------CTACTTTAG--A-------------G-----------------------CCCT-TA-----------AACTAACACTAGTTC----AATTAGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAACCAA---------AA-AATC-AAA--CAAA-----CAAAA---AACACAACACAAACAACAAACACACCACA-ACTACAAA-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCACAAATA------GAGGGTGCAACAGCA---ACAAGA------ACCACTGCCACAACC---------------ACAA---CAACCACAGC---A------------A---CCA
dm3 chr2L:14601405-14601733 - GCCTGACCTCCGA---CGCTCGAGAAGATGC---TGATTGTGAAGATAGCGAGGTAAGAAAC-T-GCAGTAT----TATA-----------TCAC-TTAG--A-------------A-----------------------CCCC-TT-----------AATTAACTCTAGATC----AATTAGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-AC-------TGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAAA--------A-TACAAA--AAAT-----ATAAA---AACACAACACAAACAA----CACAACACA-ACTACAAC-------------------------------C-AACT--------------TCCCAA---------------------------------------------GCCTGCACCACAAATA------TTGGGTGCCACAGCA---ACAAGA------ACCACTGCCACAACC---------------ACAACTACAGCCACAGC---A------------ACAACCA
droSim2 2l:14179366-14179690 - GCCTGACCTCCGA---TGCTCGAGAAGATGC---TGATTGTGAAGATAGCGAGGTAAGAAAT-T-GCAGT------GATA-----------TCAC-TTAG--A-------------A-----------------------CCCC-TT-----------AATTAACTCTAGATC----AATTAGTA------------------------------------------------TA-----ACTTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAATAA--------A-TA--CA--AAAT-----ACAAA---AACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------TTGGGTGCCACAGCA---ACAAGA------ACCCCTGCCGCAACC---------------ACAGCTACAACCACAGC---A------------ACAACCA
droSec2 scaffold_3:875143-875474 - GCCTGACCTCCGA---CGCTCGAGAAGATGC---TGATTGTGAAGATAGCGAGGTAAGAAAT-T-GCAGT------GATA-----------TCAC-TTAG--A-------------A-----------------------CCCC-TT-----------AATTAACTCTAGATC----AATTAGTA------------------------------------------------TA-----ACTTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAAAATAA-AAAA-TA--CA--AAAT-----ACAAA---AACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------TTGGGTGCCACAGCA---ACAAGA------ACCCCTGCCGCAACC---------------ACAGCTACAACCACAGC---A------------ACAACCA
droYak3 2L:14715437-14715778 - dya_319 GCCTGACCTCCGA---CGCTCGAGAAGATGC---TGATTGCGAAGATAGCGAGGTAAGAAAT-TGG-AGT------GGTACTCG-TA----TCAC-CTAG--A-------------A-----------------------CCCC-TT-----------AATTAACCCTAGATC----AATTAGTA------------------------------------------------TT-----AATTGTGACTAACACT-AACCTTTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAA-------AAA-TACAAA--AAAT---A-TAAAA---CACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAAAA------TTGGGTGCCACAGCA---ACAAGA------ACTACTGCCACAACCAACACAACCACTACCACAACTAC---------------------AACCGCAGC--
droEre2 scaffold_4929:6358138-6358479 - GCCTGACCTCCGA---CGCTCGAGAAGATGC---CGATTGTGAAGATAGCGAGGTAAGAAAT-T-GCAGG------GATA-----------TCAC--TAG--A-------------A-----------------------CCCC-TT-----------GATTAACCCTAGATC----AATTAGTA------------------------------------------------TT-----AATTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCCAAAAAAAAT--AAAAAAA-TTCAAA--AAAT-----ATAAA---AACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AAAC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------TGGGGCGCCACAGCA---ACAAGA------ACCACTGCCACTGCC---ACTGCCACAACCACAACTACAACCAC---------------AGCAACAAC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCCTGACCACGGACCACACCAGAGAGGGTGC---CCACTGTGAAGATAGCGAGGTAAGGAGA---AC---AT---CC-----CC---ACAA----CTCAG--ACACATCCCATACAACATCCACAAT----------------------CCAAAAAACAATTAACACTAGA-------------A------------------------------------------------TC-CA-CACTTGTGACTAACACTTAATCGCCACA-GC-------GACA-GGCA----AC-AACTAATCCACTTTGTTACCATCTTCC-CACTA---TCCAAAAAC----------------C-----------------GAC---AACACAACACAAACAA----CACAAC-CA-A------C---CAAACAACCAACCAAACAACCAACCAAAC-AACC--------------AACCAAACAACAGCCTGTACCAACCGAACCCGTACCCGTACCCACAGTACAGTGTGCACCAGAAATA------GTGGCTGAACCA---------AGAACCACAA------CCAC------------------------------------------------ATTGGGAAC--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................CACTGTGAAGATAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-AACC--------------AACCAAACAACAA................................................................................................................................................................19130.081010000
dp5
GCCTGACCACGGATCACACCAGAGAGGGTGC---CCACTGTGAAGATAGCGAGGTAAGGAGA---AC---AT---CC-----CC---ACAA----CTCAG--ACACATCCCATACAACATCCACAAT----------------------CCAAGAAACAATTAACACTAGA-------------A------------------------------------------------TC-CA-CACTTGTGACTAACACTTAATCGCCACA-GC-------GACA-GGCA----AC-AACTAATCCACTTTGTTACCATCTTCC-CACTA---TCCAAAAAC----------------C----------GACA--ACAC---AACACAACACAAACAA----CACAAC-CA-A------C---CAAACAAC----------------CAAAC-AACC--------------AACCAAACAACAGCCTGTACAAACCGAACCCGTACCCGTACCCACAGTACAGTGTGCACCAGAAATA------GTGGCTGAACCA---------AGAACCACAA------CCAC------------------------------------------------ATTGGAAAC--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droWil2
GGCTAACAAACGA---TTCTCGTGATGATGC---TGACTGTGAAGATAGCGAAGTAAGTTCA-AATT---AT---TT-----CT---TCAA----TACAA--ATGCATTTAGA---A---------TGAAACAAAAACCACACA-CAAATTA----------AAAAATGG--A----AATTTTTA------------------------------------------------AG-----ATACGTAACTAACACT-AATC----------------------------------------------ATAAACATTTTCC--AACA---CACCCG-------------------------------------------------------------------------------AC---CAACCAAC----------------CAAATCAACCAATAAAATCGAAACCCCCCAGAATGTACCTG------------------------------TACAGTGTGCACAACCAATA------ACGACTGAAACAAC------------------------------A---------------GCAGC---------------------------TACAAC--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAACCAATA------ACGACTGA............................................................................................2011.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAATA------ACGACTGAAACAAC------------------------------........................................................2211.00100010
...........GA---TTCTCGTGATGATGC---TGACTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
droVir3
GGCTGACGACAGG---TTCGAAAGAGGACGC---TGCATGCCAAGATAGCGAGGTAAGCCCT---GCTTT------GTT------------CGTTTTTGG--A-------------A-----------------------T-CG-TA-----------AGATA--GCTAGATA----TATAACTGAGCGCAGCTTTTACCGAAATTGTGGCAAAACATATAGTACACTGTGCAACAAA-TATCTGTGACTAACACT-AAATTAGACA-AA-------ACCAAAACA----AA-AACTAATACACTTTGTTACCATCTTCC--ACAA---CACA------------------------------------------------------------------ACATCA----------------------------------------------CA--------------ACCAAA------GCCTG------------------------------TTCAGTGCCCACCACATATT------ATGGTTGAACCAAAC---ACAA------CAA---------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................CGAAAGAGGACGC---TGCATGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.......GACAGG---TTCGAAAGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
............................CGC---TGCATGCCAAGATAGCGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
..................CGAAAGAGGACGC---TGCATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
GCCTGACCACGGG---ATCGAAGGAGGACGC---TGCCTGCCAGGACAGTGAGGTAGATAGCTCTGCT---T----GTT------------TATA-TTTG--A-------------A-----------------------T--A-TT-----------GATTGTCTGTAGACG----AGAGAG------CAACT--------------------------------CTATGTATAAAA-TATCTGTGACTAACACT-TA-AACTAAA-GA-------AATA--CCA----AA-AACTAATACACTTTGTTACCATCTTCC--GCAA---CACAAAAACAAAAA----------CC-AAA--CAAT-----ACAAA---AAAAAAAA------------------ACA-AAAACA-------------------------------------------------------AAAA------GCCTG------------------------------TTCAGAGCCCACCACAAATA------ATGGTTGATACAGACACAACAAGA------ATCACATCTAC------------------------------------------------AACAACAAC--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................AGGACGC---TGCCTGCCAGGACAGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA------------------ACA-AAAACA-------------------------------------------------------AAAA------G................................................................................................................................................................21110.091000100
droGri2
GCCTGACGAGAGG---CTCCAAGGAGGATGC---CGGCTGCCAAGATAGCGAGGTAAGTAGA-CACC-----------AAC----------AAAT-TTA-----------------G-----------------------CTTC-TA-----------CAATCATGAGATATG----AATTTATA------------------------------------------------TA-CACTACCTGTGACTAACACTAAATTAGAGCA-AAAACCGAAACCAAAACAAAACAA-AACTAATACACTTTGTTACCATCTTCC--ACAAACACACA------------------------------------------------------------------ACATCACA-AC------------------------------------------------------------CAAAAAAAAGCCTG------------------------------TTAAGTGCGCACCACAAATA------ATGGTTGATACAAAC---ACAA------CAA------CAAC------------------------------------------------AAAAACAAC--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GGCTGACCACGGA---TTCCAGAGAGGGTGC---CGACTGCGAAGATAGCGAGGTATGATCG----TTGT-----GT---CCCAA------CTAC-CAAG--T-------------G-----------------------CC-----------------AATAGTATAAGAAG----TATTTGTA------------------------------------------------A------AATTGTGACTAACACT-AATCACCACA-GT-------GGCA-GACA----AA-AACTAATCCTCTTTGTTACCATCTTCC--ACTA---TCCCGAAAAATAA------TAAA-TG--AAC-AAAT-----CAAAC---CACACAACACAAACAA----CACTCCACA-ACTACA-------------------------------------------------------CCCA---------------------------------------------GCCTGCACCACAAGTGCACCACAAGGCTGCAACTTCA---ACAAGA------ACCACAGTCACGGCC---------------------------------------------------AC--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA---ACAAGA------ACCACAGTC.............................................................2111.001000001
.GCTGACCACGGA---TTCCAGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...TGACCACGGA---TTCCAGAGAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
................TTCCAGAGAGGGTGC---CTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201000100
droBip1
GCTTGACCACGGA---TTCCAGAGAGGGTGC---TGACTGTGAAGATAGCGAGGTATGATCA---------TTATAT---CCCAA------CTAC-AAAG--T-------------G-----------------------CT---CA--------------TATTATTAAATT----TATTTGTA------------------------------------------------AA-----AATTGTGACTAACACT-AATCACTACA-AT-------GGCA-GACA----AC-AACTAATCCTCTTTGTTACCATCTTCC--ACTA---TTCCAAAAAAATAA-TAA-TAAA-TG--AATAAAAA-----AAAAC---CACACAACACAAACAA----CACACCACA-A-----------------------------------------ACC--------------ACCC-A---------------------------------------------GCCTGCACCACAAATA------AAGGCTGCAACATCAACAGCCAGA------ACCACAGTCACGGCC---------------------------------------------------AC--SizeHit CountTotal NormTotal
No Reads
droKik1
GCCTGACTACCGA---CTCCAGAGAGGGTGCCAATAATTGTGAGGATAGCGAGGTAAGAATC-GAAA---AT----GAAA-----------CCAATGCAA--A--------------------------------------CGC-TC-----------TCTTAACACTAGACCAAATAATTTGTA------------------------------------------------CG-----AATTGTGACTAACACT-AATCACCACAAAC-------AGCA-GACA----ACAAACTAATCCACTTTGTTACCATCTTCCACACTA---TCTTAAAACGAAAA--------A-CA--AA--A--CAAA--ACAAA---AACAAAACAATCACCA----CACACTACA-ACTACAAA-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------GTGGGTAAAACAGCA---ACCAGA------ACCACAACC------------------------------------------------------GTAGC--SizeHit CountTotal NormTotal
No Reads
droFic1
GCTTGACCACAGA---CGCTCAACAAGGTGC---TGACTGTGAAGATAGCGAGGTAAGAAAT-TAGCGGG-T---TGATG-----------CAAC-ACAA--A-------------C-----------------------CCCCTCA-----------AATTAACACTAGATG----AACTGGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-GC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAACGAA-AAAAA-AATC----------GAAA-AAACA---AACACAACACAAACAA----CACAACACA---------------------------------------------------------------CAA---------------------------------------------GCCTGCACCACAAATA------ATGGCTGCAACAGCA---ACAAGA------ACCACTGCCACTGCC---GCAACC------ACA---------ACAGC---AACAACCACATCAGCGGC--SizeHit CountTotal NormTotal
No Reads
droEle1
GCCTGACCACCGA---CGCTCGAGAGGGTGC---TGATTGTGAAGACAGCGAGGTAAGAAAT-TAGC---AT----GAAAC----------CCAC-TTAG--A-------------T-----------------------CCCCCTA-----------AATTAACACCAGACG----AACTTGTA------------------------------------------------TC-----AATTGTGACTAACACT-AATCACTACA-GC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCACAAAA---T--AAAAA-AATC----------GAAACAAAAACACAACACAACACAAACAA----CACAACACA-ACTACAA----------------------------------------------------ACCTAA---------------------------------------------GCCCGCACCACAAATA------ATGGCTGCAACAGCA---ACAAGA------ACCACTGCCACTGCC---------------------ACAACCACAGC---A---ACCACATCAGCGGC--SizeHit CountTotal NormTotal
No Reads
droRho1
GCCTGACCACCGA---CGCTCGAGAAGGTGC---TGATTGTGAAGATAGCGAGGTAAGGAGT-TAGC---AC----GAGA-----------CCAC-TCA---A-------------G-----------------------CCCC-TA-----------AATTAACACTAGACG----AATTAGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-GC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAAT--ATATA-AACC----------GAA---ACAA---AACACAACACAAACAA----CACACCACA-ACTACAAA-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCCGCACCACAAATA------ATGGCTGCAACAGCA---ACAAGA------GCCACTGCCACAACC---------------ACAG------------C---A---ACCACATCAGCGGC--SizeHit CountTotal NormTotal
No Reads
droBia1
GCCTGACCACCGA---CGCTCGGGAGGGCGC---TGATTGTGAAGACAGCGAGGTAAGGAAC-CAAC---TTTGCAG--------------CCCC-TTAG--A-------------A-----------------------GCCC-TC-----------AATTAACACTAGATA----AATTAGTA------------------------------------------------TA-----AGTTGTGACTAACACTTAATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAC------GA-AAAA-TG--AA--AAAC-----AAAAA---CACACAACACAAACAA----CACACCACA-ACTACAACCTAC---------------------------A-AACA--------------ACCCAA---------------------------------------------GCCTGCACCGCAAATT------ACGGGTGCCACAACA---ACAAGA------ACCACTGCCACAG---------------------------------C---G------------ACCACTTSizeHit CountTotal NormTotal
No Reads
droTak1
GCCTGACCACCGA---CGCTCGAGAGGGTGC---TGATTGTGAAGATAGCGAGGTAAGAAAT-TAGC---ATTACGG---CCCA----------T-ATAAAAA--C----------A-----------------------CCCC-CT-----------AATTAACACTAGATA----GATTAGAA------------------------------------------------TA-CG--AATTGTGACTAACACTTGATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCCAAACAAAAT--GA-AAAA-TA--AACAACAA-----AAAAA---CACACAACACAAACAA----CACAACACAAACTACAAA-------------------------------C-AA------------------CCAA---------------------------------------------GCCTGCACCACAAATT------ATGGGTGCAACAGCA---ACAA------------CTGCCACAACC---------------ACAG------------CAACTACTACCACAACAGCGGC--SizeHit CountTotal NormTotal
No Reads
droEug1
GCCTGACCACCGA---CGCTCGAGAAGGTAC---CGATTGTGAAGATAGCGAGGTAAGAAAT-TAGC---AT----GAAA-----------CTACTTTAG--A-------------G-----------------------CCCT-TA-----------AACTAACACTAGTTC----AATTAGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAACCAA---------AA-AATC-AAA--CAAA-----CAAAA---AACACAACACAAACAACAAACACACCACA-ACTACAAA-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCACAAATA------GAGGGTGCAACAGCA---ACAAGA------ACCACTGCCACAACC---------------ACAA---CAACCACAGC---A------------A---CCASizeHit CountTotal NormTotal
No Reads
dm3
GCCTGACCTCCGA---CGCTCGAGAAGATGC---TGATTGTGAAGATAGCGAGGTAAGAAAC-T-GCAGTAT----TATA-----------TCAC-TTAG--A-------------A-----------------------CCCC-TT-----------AATTAACTCTAGATC----AATTAGTA------------------------------------------------TA-----AATTGTGACTAACACT-AATCACTACA-AC-------TGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAAA--------A-TACAAA--AAAT-----ATAAA---AACACAACACAAACAA----CACAACACA-ACTACAAC-------------------------------C-AACT--------------TCCCAA---------------------------------------------GCCTGCACCACAAATA------TTGGGTGCCACAGCA---ACAAGA------ACCACTGCCACAACC---------------ACAACTACAGCCACAGC---A------------ACAACCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................AGCGAGGTAAGAAAC-T-GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GAGAAGATGC---TGATTGTGAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GATTGTGAAGATAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CACAACACA-ACTACAAC-------------------------------C-AACT--------------TCCCAA---------------------------------------------G.........................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CCGA---CGCTCGAGAAGATGC---TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACA-ACTACAAC-------------------------------C-AACT--------------TCCCAA---------------------------------------------G.........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACC---------------ACAACTACAGCCACAGC---A------------ACAAC..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACCACTGCCACAACC---------------ACAACTAC................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCCGA---CGCTCGAGAAGATGC---TGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACTACAAC-------------------------------C-AACT--------------TCCCAA---------------------------------------------GAA.......................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---ACAAGA------ACCACTGCCACAACC---------------ACAAC...................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GATGC---TGATTGTGAAGATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGA------ACCACTGCCACAACC---------------........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GAGAAGATGC---TGATTGTGAAGATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAATA------TTGGGTGCCACAG.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---ACAAGA------ACCACTGCCA............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATGC---TGATTGTGAAGATAGCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AAA--------A-TACAAA--AAAT-----ATAA..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGAAGATGC---TGATTGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCA---ACAAGA------ACCACTGCCAC...........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACAACACA-ACTACAAC-------------------------------C-AACT--------------TCCCAA---------------------------------------------G.........................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCCACAGC---A------------ACAACCA2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA--------A-TACAAA--AA.....................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCCTGACCTCCGA---TGCTCGAGAAGATGC---TGATTGTGAAGATAGCGAGGTAAGAAAT-T-GCAGT------GATA-----------TCAC-TTAG--A-------------A-----------------------CCCC-TT-----------AATTAACTCTAGATC----AATTAGTA------------------------------------------------TA-----ACTTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAATAA--------A-TA--CA--AAAT-----ACAAA---AACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------TTGGGTGCCACAGCA---ACAAGA------ACCCCTGCCGCAACC---------------ACAGCTACAACCACAGC---A------------ACAACCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCCTGACCTCCGA---CGCTCGAGAAGATGC---TGATTGTGAAGATAGCGAGGTAAGAAAT-T-GCAGT------GATA-----------TCAC-TTAG--A-------------A-----------------------CCCC-TT-----------AATTAACTCTAGATC----AATTAGTA------------------------------------------------TA-----ACTTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAAAATAA-AAAA-TA--CA--AAAT-----ACAAA---AACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------TTGGGTGCCACAGCA---ACAAGA------ACCCCTGCCGCAACC---------------ACAGCTACAACCACAGC---A------------ACAACCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGCAACC---------------ACAGCTAC................................1911.0010010
droYak3
GCCTGACCTCCGA---CGCTCGAGAAGATGC---TGATTGCGAAGATAGCGAGGTAAGAAAT-TGG-AGT------GGTACTCG-TA----TCAC-CTAG--A-------------A-----------------------CCCC-TT-----------AATTAACCCTAGATC----AATTAGTA------------------------------------------------TT-----AATTGTGACTAACACT-AACCTTTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCAAAAAAAAA-------AAA-TACAAA--AAAT---A-TAAAA---CACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AACC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAAAA------TTGGGTGCCACAGCA---ACAAGA------ACTACTGCCACAACCAACACAACCACTACCACAACTAC---------------------AACCGCAGC--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................CGAGAAGATGC---TGATTGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
droEre2
GCCTGACCTCCGA---CGCTCGAGAAGATGC---CGATTGTGAAGATAGCGAGGTAAGAAAT-T-GCAGG------GATA-----------TCAC--TAG--A-------------A-----------------------CCCC-TT-----------GATTAACCCTAGATC----AATTAGTA------------------------------------------------TT-----AATTGTGACTAACACT-AATCACTACA-AC-------AGCA-GACA----AC-AACTAATCCACTTTGTTACCATCTTCC--ACTA---TCCCCAAAAAAAAT--AAAAAAA-TTCAAA--AAAT-----ATAAA---AACACAACACAAACAA----CACACCACA-ACTACAAC-------------------------------C-AAAC--------------ACCCAA---------------------------------------------GCCTGCACCTCAAATA------TGGGGCGCCACAGCA---ACAAGA------ACCACTGCCACTGCC---ACTGCCACAACCACAACTACAACCAC---------------AGCAACAAC--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................AGAAGATGC---CGATTGTGAAGATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...TGACCTCCGA---CGCTCGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000

Generated: 06/08/2015 at 04:39 PM