| Legend: | mature | star | mismatch in alignment | mismatch in read |
Predicted structure
Flybase annnotation
CDS [Dper\GL25956-cds]; exon [dper_GLEANR_8501:2]; exon [dper_GLEANR_8501:1]; CDS [Dper\GL25956-cds]; intron [Dper\GL25956-in]
No Repeatable elements found
Sense Strand Reads
##################################################----------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAGCATAGAGATAGCCATATAGATATAGCCAGCATAAAGCAGAAAATCGTAAGAAACGATCGCATGATGTGCACCATTCGAAGGATGGAGCAATACGCCCATATGCCAATCGACTTTCAGCCCAAAATATTCCGCCACGACTATCACTGGAAACTGAAGAAAATCAATAGTGTTGATAAATTCTGCCAAGAAGCAGCTCGTCGAAAAAAAGCTGCAGAAGGATCAAAAGGTGCCCAAAAA
**************************************************...((((.((((.(((((.(((((.((((((...)))))).))).......)))))))..))))..((((((.(((..(((.((......)).)))...)))...))))))...((((((...))))))...))))......**************************************************
|
Read size |
# Mismatch |
Hit Count |
Total Norm |
Total |
M042
female body
|
V042
embryo
|
| .................................................................................................................................................TCACTGGAAACTGAAGAAAATCAATAG...................................................................... |
27 |
0 |
1 |
1.00 |
1 |
1 |
0 |
| .......................................................................................................TGCGCCAATCGACTTTCAGT....................................................................................................................... |
20 |
3 |
6 |
0.17 |
1 |
0 |
1 |
Anti-sense strand reads
TCGTCGTATCTCTATCGGTATATCTATATCGGTCGTATTTCGTCTTTTAGCATTCTTTGCTAGCGTACTACACGTGGTAAGCTTCCTACCTCGTTATGCGGGTATACGGTTAGCTGAAAGTCGGGTTTTATAAGGCGGTGCTGATAGTGACCTTTGACTTCTTTTAGTTATCACAACTATTTAAGACGGTTCTTCGTCGAGCAGCTTTTTTTCGACGTCTTCCTAGTTTTCCACGGGTTTTT
**************************************************...((((.((((.(((((.(((((.((((((...)))))).))).......)))))))..))))..((((((.(((..(((.((......)).)))...)))...))))))...((((((...))))))...))))......**************************************************
|
Read size |
# Mismatch |
Hit Count |
Total Norm |
Total |
V111
male body |
| ................................................................................................................................................................................CTATCTAAGAAGGTTCGTCGT............................................. |
21 |
3 |
2 |
0.50 |
1 |
1 |
Re-alignment of all predicted orthologs
| Species |
Coordinate |
ID |
Alignment |
| droPer2 |
scaffold_5:1267759-1268000 + |
dpe_1748 |
AGCAGCATAGAGATAGCCATATAGATATAGCCAGCATAAAGCAGAAAATCGTAAGAAACGATCGCATGATGTGCACCATTCGAAGGATGGAGCAATACGCCCATATGCCAATCGACTTTCAGCCCAAAATATTCCGCCACGACTATCACTGGAAACTGAAGAAAATCAATAGTGTTGATAAATTCT-G-CCAAGAAGCAGCTCGTCGAAAAAAAGCTGCAGAAGGATCAAAAGGTGCCCAAAAA |
| dp5 |
4_group1:4002927-4003170 - |
|
AGCAGCAGAGAGATAGCCATATAGATATAGCCAGCATAAAGCAGAAAATCGTGAGAAACGATCGCATGATGTGCACTATTCGAAGGATGGAGCAATACGCCCATATGCCAATCGACTTTCAGCCCAAAATATTCCGCCACGACTATCACTGGAAACTGAAGAAAATCAATAGTGTTGATAAATTCTTGCCCAAGAAGCAGCTCGTCGAAAAAAAGCTGCAGAAGGATCAAAAGGTGCCCAAAAA |
Re-alignment of all predicted orthologs with sRNA reads
| Species |
Read alignment |
| droPer2 |
| AGCAGCATAGAGATAGCCATATAGATATAGCCAGCATAAAGCAGAAAATCGTAAGAAACGATCGCATGATGTGCACCATTCGAAGGATGGAGCAATACGCCCATATGCCAATCGACTTTCAGCCCAAAATATTCCGCCACGACTATCACTGGAAACTGAAGAAAATCAATAGTGTTGATAAATTCT-G-CCAAGAAGCAGCTCGTCGAAAAAAAGCTGCAGAAGGATCAAAAGGTGCCCAAAAA | Size | Hit Count | Total Norm | Total | M021
Embryo | M042
Female-body | V042
Embryo | V050
Head | V057
Head | V111
Male-body |
| .................................................................................................................................................TCACTGGAAACTGAAGAAAATCAATAG........................................................................ | 27 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
|
| dp5 |
| AGCAGCAGAGAGATAGCCATATAGATATAGCCAGCATAAAGCAGAAAATCGTGAGAAACGATCGCATGATGTGCACTATTCGAAGGATGGAGCAATACGCCCATATGCCAATCGACTTTCAGCCCAAAATATTCCGCCACGACTATCACTGGAAACTGAAGAAAATCAATAGTGTTGATAAATTCTTGCCCAAGAAGCAGCTCGTCGAAAAAAAGCTGCAGAAGGATCAAAAGGTGCCCAAAAA | Size | Hit Count | Total Norm | Total | M022
Male-body | M040
Female-body | M059
Embryo | M062
Head | V043
Embryo | V051
Head | V112
Male-body | SRR902010
Ovary | SRR902011
Testis | SRR902012
CNS imaginal disc |
| ......................AGATATAGCCAGCATAAAGCAGAAA..................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 |
|
Generated: 06/08/2015 at 04:36 PM
