ID:

dpe_1747

 Coordinate:

scaffold_5:1181289-1181525 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.17 -5.0 -4.9

Flybase annnotation

CDS [Dper\GL25947-cds]; exon [dper_GLEANR_8493:3]; exon [dper_GLEANR_8493:4]; CDS [Dper\GL25947-cds]; intron [Dper\GL25947-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGCCGAGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACCCCACCACCAACACAGACACCACCACCACCACTTTCAACTCCTCCAACGCACAACACAACAACAACACTGTAAATACAAGTACAAAAACAACAACCGAAAACGAAACCGAAACCACAGAGAACACCACAACAACTACAACCACTACAAAAACCACCTATGAGACCGAGACTGTTGTAGCAGCCGCAGAGTTAGTTCAGACCCAAACAATCCTAACCAATACGATCCTCCAGGCAGCAGAAGCAGCAGAAGAAGAAGCTCAAGTCGTTGAGGCAATCATTCA
***************************************************************************************************************************************......................................................(((((((...............................)))))))............******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 M021
embryo
 V057
head
...................................................................................................................................................................................................................................GTTGTAGCAGCCGCAGAGT........................................................................................... 19 0 1 3.00 3 0 3 0 0 0
....CGAGTCCTCTGAGGCCGAACAGATCA................................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0
................................AACAAGTCGCAAATTGAGGT............................................................................................................................................................................................................................................................................................. 20 0 1 2.00 2 0 2 0 0 0
.........................................................................................................................................................................................................................GACCGAGACTGTTGTAGC...................................................................................................... 18 0 1 2.00 2 0 0 0 2 0
.............................................................................................................................................................................................................................GAGACTGTTGTAGCAGCCGCAGA............................................................................................. 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................ATACGATCCTCCAGGCAGCAGAAGCA...................................... 26 0 1 1.00 1 1 0 0 0 0
..GCCGAGTCCTCTGAGGCCGAACA........................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
........................................GCAAATTGAGGTAAACCCCA..................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................CACCTATGAGACCGAGACTGT............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................GTACAAAAACAACAACCGAAAACGA................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
......................................................................................................................CAACACTGTAAATACAAGT........................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.......GTCCTCTGAGGCCGAACAGAT..................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................CCAATACGATCCTCCAGGCAGC............................................. 22 0 1 1.00 1 1 0 0 0 0
.........................GATCAAGAACAAGTCGCAAAT................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
................................................................................................CCTCCAACGCACAACACAACA............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................................TGTTGTAGCAGCCGCAGAG............................................................................................ 19 0 1 1.00 1 0 0 0 0 1
.......................................................................................................................................................................................................................................................................ATTCTGACCGATACGATCCTC..................................................... 21 3 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................CTCCAGGCAGCAGAAGCAGCA................................... 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................AGCAGAAGAAGAAGCTCAAGTC................. 22 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................ACTACAAAAACCACCTATGAGA...................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
...........................................................................................................................................................................................................AAAACCACCTATGAGACCGAGACT.............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................ATCCTAACCAATACGATCCTCCA................................................... 23 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................................................AGACCCAAACAATCCTAACCAA............................................................... 22 0 1 1.00 1 0 0 0 1 0
.........................................................................................TTCAACTCCTCCAACGCACAACACAACAA........................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................ACAAAAACCACCTATGAGAC..................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
............CTGAGGCCGAACAGATCAAGA................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0
...........................................................................................................................................................................................................................................................................TAACCAATACGATCCTCCAGGC................................................ 22 0 1 1.00 1 1 0 0 0 0
.............TGAGGCCGAACAGATCAAG................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................AAGCTCAAGTCGTTGAGGC......... 19 0 1 1.00 1 1 0 0 0 0
.......GTCCTCTGAGGCCGAACAGATCAAGAAC.............................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
............................................ATTGAGGTAAACCCCACCACCA............................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................CCGAGACTGTTTTAGCGGC................................................................................................... 19 2 3 0.33 1 0 0 1 0 0
.......................................................................................................................................................................................................................................TAGCAGCAGCAGAGATAGATC..................................................................................... 21 3 13 0.08 1 0 0 0 0 1

Anti-sense strand reads

GGCGGCTCAGGAGACTCCGGCTTGTCTAGTTCTTGTTCAGCGTTTAACTCCATTTGGGGTGGTGGTTGTGTCTGTGGTGGTGGTGGTGAAAGTTGAGGAGGTTGCGTGTTGTGTTGTTGTTGTGACATTTATGTTCATGTTTTTGTTGTTGGCTTTTGCTTTGGCTTTGGTGTCTCTTGTGGTGTTGTTGATGTTGGTGATGTTTTTGGTGGATACTCTGGCTCTGACAACATCGTCGGCGTCTCAATCAAGTCTGGGTTTGTTAGGATTGGTTATGCTAGGAGGTCCGTCGTCTTCGTCGTCTTCTTCTTCGAGTTCAGCAACTCCGTTAGTAAGT
*******************************************************************************************......................................................(((((((...............................)))))))............*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V057
head
 V050
head
..................................................................................................................................................................................................TGGTGATGTTTTTGGTGGATA.......................................................................................................................... 21 0 1 2.00 2 2 0 0 0
............................................................................................................................................................................TCTCTTGTGGTGTTGTTGAT................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0
.....................CTGTCTAGTTCCTGTTCAGGG....................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0
........................................CGGTTAACTCGATGTGGGG...................................................................................................................................................................................................................................................................................... 19 3 10 0.40 4 0 4 0 0
...........................................................................................................GTTGTTTTGTTGGTGTGACAGT................................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 1
....................................................TTTGGGGTGGAGGTTGTGG.......................................................................................................................................................................................................................................................................... 19 2 14 0.07 1 1 0 0 0
...........................................................................................................................................................................................................................................................................CTTGGTGATGCTCGGAGGT................................................... 19 3 19 0.05 1 1 0 0 0
..................................................................................................................................................................................................TGGTGATGTGATTGGTGGG............................................................................................................................ 19 3 20 0.05 1 1 0 0 0
..............................................................TGGTAGTGTCTGTGGTCGTGGT............................................................................................................................................................................................................................................................. 22 2 20 0.05 1 0 1 0 0
...............................................................................................................................................................................CTTGTAGTGTTCTTGCTGTT.............................................................................................................................................. 20 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_5:1181239-1181575 + dpe_1747 CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACCCC----------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACA---CAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCG------------A---A---AACGAAACCGAAACCACAGAGAACACC------ACAACA---ACTACAACCACTACA------------AAA---A-------------------------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------AAGA-----AGAAGCTCAAGTCGTTGAGGCAATCATTCA
dp5 4_group1:4083213-4083549 - dps_1408 CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACCCC----------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACA---CAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCG------------A---A---AACGAAACCGAAACCACAGAGAACACC------ACATCA---ACTACAACCACTACA------------AAA---A-------------------------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------AAGA-----AGAAGCTCAAGTCGTTGAGGCAATCATTCA
droWil2 scf2_1100000004945:318466-318832 + CCGCTG------AATC---CGAGGCCGAGCAAATCAAGAACAAGTCGCAAATTGAGGTAAACCA-------------------AATAGACATCACACCC-T--------------CTAACAACAACG---C---ACA---CAACAACA----ACAACGACACTGTAAATACGAGTACAAAAACATTAACAA------------C------AGA---AACAGAAACCACCGAAACAAC------------------AACAATAATAACA------------ACA----------------------------------ACAGCCACTGAGACCG---AAACCACCATTG---CAGCCGCAGATTTAGTTCAGACCCTAA---CCAAC------A---------------CCACCACCAC------------CACCACC---AAT------A---CAGT------------------CCCAACAATCCCACCACCT-------------AGCCACA-----------------------------------------------------------------CCACTGACACCAACAACACAAACATCACAGATA---------CTT-----TGCCAGGCGAAGAAGAAGAACAAGTGGTCCAAGCAATTATTGC
droVir3 scaffold_12723:3024851-3025190 + TCGCCGAATCCGAGAC---CGAGGCCGAGCTAATTAAGAACAAGTCGCAAATCGAGGTAAAACAA----C-----AACA----ACTAGACACC-------------------------------------------------ACAGCAAACAACCAGAACACTGTAAATACGAGTATCACAACAACAACAA------------C------AAG---AACCACAGCCACTGAGAACACC------ACAAT-------------------------------------------------------------------CACAATCACTGAGACAG---AGACCATTG------CCGCCGCAGAGTTAGTTCAGACCCAAT---CAACCAACACCCAAAATAACACAATAC---CTAACAT------CACCACCACCAACACCAAG------A---CCACCACCGACAATTCCGTTTATC-----TTCCCACCTCCC-------------AAGCGCAGGAC----------GAAGTGC--------------------------------------------------------------------------------------------------AAGC-----CGACGCCGACGCCGACGC------------
droMoj3 scaffold_6500:6843208-6843537 - C----------GAGTC---TGATGCCGAGCAAATTAAGAACAAGTCGCAAATTGAGGTAAAACAA------------CA----ACTAG------------------------------------------------------ACAACA----CAAACAACACTGTAAATACGAGTACCACCACAACAACAA------------C------AAC---AACAAACGCCACTGAGAACAAC--------ACTG----------------------------------------AA-------------------------AAAACCACAGAGACCG---AAACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAC---AAGCCAACTCCCAAAATAACACACTACCACCTAACAC------------AACCGAC------------A---CAACCACCGACAATTCCGCTTATC-----TTCCCACCTCCC-------------AAGCGCAGGAC----------GAAGTGCAAGCGGATGTCG---------CC----------------------------------------------------------------------------------GAAGAAGAACAAGTGGTTGCCGCTATTAT---
droGri2 scaffold_15126:457767-458182 - CTGTCG------AGTC---CGAGGCCGAGCAAATTAAGAACAAGTCGCAAATCGAGGTAAAAC-------------------AAATAGACACCACCACC------------------------------AC---AAA---CAACAACA----ACAACAATACTGTAAATACGAGTACCACAACAACAACA---------------------G------------CTACAGAGAACAACAACACCACAAT---------CACAACAACT------------GAA---AAAACAA----------------CAACAACCACAACCACTGAGACCG---AGACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAACCACAATC------CAAAATAACACAATAC---CTAACACAGCCAATACCACAACCAACACCACAACCAATACCACAACCACCGACAATT-------CC-----GTCCAACTTCCCAACACTACTGTCCAAGCGCAGCA-AGAA---GAAGAAGGGCTCGT---CAACG---------------------------------------------------------------------------CCAATGCCGCCAAG-GAAGAAGAAGAACAAGTGGTTGCTGCCATTATT--
droAna3 scaffold_12916:10083192-10083553 + -----------G------------------AGGCCGAAAAGGGACAACCAATCGAGGTAAAGAGC----------TTTAC---AACCGACTGCACTACA-C--------------CCAACCACA------------A---CAACAATA----AACACCACACTGTAAATACCAGTACAAGAATAACC------------------------GC---CACAGAAATCACTGAGAACATT------GCACAA---AAAATAACCCGAACC------------GAA---ACTGAAACTGAAACAGAGACAGAGACCA-TTACTAGCACTGGGACAGATGAGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCATCG---AA-GACGTGAAAGCGGAAG------------------------------------------------------------------------------CC-----AGTCAAGC-----CGAGGAGGAAGTGGTAGCGGCCATCATTCA
droBip1 scf7180000396580:952314-952664 - C----------G------------------AATCCGAGAAAGGACAACCAATCGAGGTAAAGC-------------TCTTAACAAATGACTGCACTACA-C--------------CCAACCACA------------A---CAACAATA----AACACAACACTGTAAATACCAGTACAACAATAACC------------------------GC---CACAGAAATCACTGAGAACATT------GCACAA---AGAATAACCCGAACCCGTACCAGAACAGAT---ACCATAACAGGGACTGAGACAGA-GACTACAACTAGCACTGAGACAG---AGACTGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------TCACGCAGGCCGACG---AT-GACGTGA-------------------------------------------------------------------------------------------------------------AAGCGGAAGCCGTTACTGTCCCCAGTCA
droKik1 scf7180000302412:561656-561982 + T----------G------------------AGGCCGAGAAGGGGCAGCAAATTGAGGTAAAG-------------CACACAAGTACAGACAGCACC------------------------------------------------AGCG----AAAACTACACTGTAAATACAACAACAACAACAACC------------------------AC---TACCGAAATCACAGAGAACACT------GCACAC---AGAACAATAACAACA------------GAATTAACAGAAA----------------GAACATGCACAAGCACCAAGACAGAAGCGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCGAAAC------------AACCAAC------------A---CGAT------------------CC-----TTTCCACCTCCC-------------AAACGCAGGC-ACCA---G---A------------GGC------------------------------------------------------------------C---ATCAGCAGC-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCTGCGATCATCCA
droFic1 scf7180000454117:78601-78981 + T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCAACAC---------------------------------ACACAATAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------CTAAAGCAAC---AACCGAATTCACAGAGAACACA------GCACTA---AAAACAATAAGTACA------------GAA---ACCGAAA----------------GAACTTGCACTAGCACTGTGACCG---AGACCGTTGTAG---AAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----CTTCCACCTCCC-------------ACACGCAGGCCAGCA---GC-GAAGTGATTGA---AGCAGTGAC--------------------CAGCATCACC----------------------------ACC---AGCAGCAGC-----AGCCAAGC-----CGAGGAGGAAGTTGTGGCGGCGATCATCAA
droEle1 scf7180000491186:1217562-1217940 + ------------------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACTACA-C--------------ACAACAACA------------A---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAACACCAACAAACACAAAAACAAC---AACCGAAATCACAGAAAACACT------GCACTA---AAAACAATAAGTACA------------GAA---ACCGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAT---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA-------------TTGA---AGCAGTTAC--------------------CACGACCACT----------------------------ACC---------ACT-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAA
droRho1 scf7180000771933:94829-95168 + ------------------------------AGAACGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCACA------------------------------CA---CAG---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAGA---------------------AC---AACCGAAATCACAGAAAACACT------GCACTA---AAAACAATAAATACA------------GAA---ACAGAAA----------------GAACTTGCACAGGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---AT-GA------------AGCAGT------------------------------------------------------------TACC---------ACC-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAA
droBia1 scf7180000301500:214326-214736 - T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACAACACAGCA----AACACAAGAACAGACTGCACCACA-----------------CAACAACAA----CA---ACA---CTACAGCA----AAAACTCCACTGTAAATACAAGTACAACAACAACAACAGCA---------ACTAAAACCAC---AACTGAAATCACAGAGAACACT------GCACTT---AAACAAATAAGTACC------------GA----------------------------------CACAAGCACTGTGACCG---AGACCTTAGTAGCCGCAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---AC-GAGGTGATTGA---AGCAGCAGCAGCGGCAGTAGAAGCAGCGGCAGCCGCAGCA------------------------GTGGCCGCCACCAGCAGC-----AGCCAGGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAA
droTak1 scf7180000415629:145591-145958 + -----------G------------------AGACCGAGAAGGGACAACAAATTGAGGTAAACAAC-------AAGCACACAAGAACAGACAGCACCACCAC--------------A-------------CAAGAACA---CAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAA------------A---AACCAC---AACCGAAATCACAGAGAACACT------GCACTAGAAAATACTAAAAGTACA------------GAA---ACAGAA-------------------------ACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCAGCAGC-GAAGTGATTGA---AGCAG---------CAG---------------------CA------------------------GTGTCC---------ACC-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAA
droEug1 scf7180000409461:453745-454105 + ------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----CAAAACCACACAAGAACAGACAGCACCACA------------------------------CA---ACA---CAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------C------AAC---AACCGAAATCACAGAAAACACT------GCACTA---AAAACAATAAGTACA------------GAA---ACAGAAA----------------GAACATGCACAAGCACAGTGACCG---AGACCGTTCTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---AC-GAAGTGATTGAAGAAGCAGT------------------------------------------------------------GACC---------AAC-----AGCCAGGC-----GGAGGAGGAAGTTGTGGCGGCTATTATCAA
dm3 chr2L:8428042-8428390 + ------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAACACCACA------------------------------CA---ACA---CAACAGCA----AAAACATCACTGTAAATACAAGTACAACAACAACAAAA---------------------AC---AACCGAAATCACAGAGAACACT------GCACTA---AAAACAATAAGTACA------------GAT---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACAAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCAATCATCAA
droSim2 2l:8154981-8155343 + dsi_13324 ----------------------GGCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCACA------------------------------CA---ACA---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------C------AAAAACAACCGAAATCACAGAGAACACT------GCACTA---AAAACAATAAGTACA------------GAT---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACAAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCGATCATCAA
droSec2 scaffold_3:3924316-3924678 + dse_1182 ----------------------GGCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCACA------------------------------CA---ACA---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------C------AAAAACAACCGAAATCACAGAGAACACT------GCACTA---AAAACAATAAGTACA------------GAT---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACAAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCGATCATCAA
droYak3 2L:11065979-11066335 + ----------------------GGCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACCGACAGCACTACA------------------------------CA---ACA---CAACAGCA----AAAACAACACTGTAAATACAAGTACAACAACAACAAAA---------------------AC---AACCGAAATCACAGAGAACACT------GCACAA---AAAACTATAAGTACA------------GAA---ACAGAAA----------------GAACTTGCACAAGCACTGTGACTG---AGACCGTTGTAG---TAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCAATCATCAA
droEre2 scaffold_4929:17336751-17337107 + der_1343 ----------------------GGCCACGGAGATCGAGAAAGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACTGACAGCACCACA------------------------------CA---ACA---CAACAGCA----AAAACCACACTGTAAATACAAGTACAACAACAACAAAA---------------------AC---AACTGAAATCACAGAGAACACT------GCACTA---AAAACTATAAGTACA------------GAA---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------AACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCAATCATCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACCCC----------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACA---CAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCG------------A---A---AACGAAACCGAAACCACAGAGAACACC------ACAACA---ACTACAACCACTACA------------AAA---A-------------------------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------AAGA-----AGAAGCTCAAGTCGTTGAGGCAATCATTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................GTTGTAG---CAGCCGCAGAGT.....................................................................................................................................................................................................................................................................................................................1913.003000003
....CG------AGTCCTCTGAGGCCGAACAGATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
......................................AACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
........................................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---C................................................................................................................................................................................................................................................................................................................................1812.002200000
............................................................................................................................................................................................................................................................................................................................................G---AGACTGTTGTAG---CAGCCGCAGA.......................................................................................................................................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------AGCA..............................................................................................................................2611.001010000
..GCCG------AGTCCTCTGAGGCCGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................GCAAATTGAGGTAAACCCC----------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................CACCTATGAGACCG---AGACTGT.........................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................GTACAAAAACAACAACCG------------A---A---AACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................CAACACTGTAAATACAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............GTCCTCTGAGGCCGAACAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGC.......................................................................................................................................................2211.001010000
...............................GATCAAGAACAAGTCGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................................................................................CCTC------CAACGCACA---ACA---CAAC----------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................TGTTGTAG---CAGCCGCAGAG......................................................................................................................................................................................................................................................................................................................1911.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----TC----------------------------CAGGC-AGCA---G---A------------AGCAG---------CA..................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CAG--------------------------------------------------------------------------AAGA-----AGAAGCTCAAGTC.................2211.001010000
......................................................................................................................................................................................................................................................................ACTACA------------AAA---A-------------------------------CCACCTATGAGA......................................................................................................................................................................................................................................................................................................................................................2211.001001000
........................................................................................................................................................................................................................................................................................AAA---A-------------------------------CCACCTATGAGACCG---AGACT...........................................................................................................................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................ATC------C---------------TAACC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CA..............................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAA---CAATC------C---------------TAACC---------------------AA............................................................................................................................................................................................................................................2211.001100000
.........................................................................................................TTCAACTCCTC------CAACGCACA---ACA---CAAC----------AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.........................................................................................................................................................................................................................................................................ACA------------AAA---A-------------------------------CCACCTATGAGAC.....................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................CTGAGGCCGAACAGATCAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................TAACC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-..........................................................................................................................................................2211.001010000
...................TGAGGCCGAACAGATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCAAGTCGTTGAGGC.........1911.001010000
.............GTCCTCTGAGGCCGAACAGATCAAGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..................................................ATTGAGGTAAACCCC----------ACCACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
dp5
CCGCCG------AGTCCTCTGAGGCCGAACAGATCAAGAACAAGTCGCAAATTGAGGTAAACCCC----------ACCACCAACACAGACACCACCACCACCACTTTCAACTCCTC------CAACGCACA---ACA---CAAC----------AACAACACTGTAAATACAAGTACAAAAACAACAACCG------------A---A---AACGAAACCGAAACCACAGAGAACACC------ACATCA---ACTACAACCACTACA------------AAA---A-------------------------------CCACCTATGAGACCG---AGACTGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------AAGA-----AGAAGCTCAAGTCGTTGAGGCAATCATTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................ATGAGACCG---AGACTGTTGTAG---C................................................................................................................................................................................................................................................................................................................................2214.0040000000004
........................................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---CAGC.............................................................................................................................................................................................................................................................................................................................2113.0030100000002
...............................GATCAAGAACAAGTCGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CAG--------------------------------------------------------------------------AAGA-----AGAAGCTCAAGTCGT...............2412.0020200000000
..............................................................................................................................................................................................................................................................................................A-------------------------------CCACCTATGAGACCG---AGAC............................................................................................................................................................................................................................................................................................................................................2012.0020200000000
..GCCG------AGTCCTCTGAGGCCGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................GTTGTAG---CAGCCGCAGAGTTAGTTCA..............................................................................................................................................................................................................................................................................................................2612.0020100001000
...................................................................................................................................................................................................................................................................................................................................TATGAGACCG---AGACTGTTGTAG---.................................................................................................................................................................................................................................................................................................................................2211.0010000000001
........................................................................................................................................................................................ACAACCG------------A---A---AACGAAACCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.CGCCG------AGTCCTCTGAGGCCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------A.................................................................................................................................1911.0010000010000
..................................................ATTGAGGTAAACCCC----------ACCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................AGTTAGTTCAGACCCAAA---CAATC------C---------------TA......................................................................................................................................................................................................................................................................2611.0010100000000
.........................CGAACAGATCAAGAACAAGTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
..........................................................................................................................................................................................AACCG------------A---A---AACGAAACCGAAACCACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......................................ACAAGTCGCAAATTGAGGTAAACCCC----------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
......................................AACAAGTCGCAAATTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................AACAACAACCG------------A---A---AACGAAACCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................ATGAGACCG---AGACTGTTGTAG---CAGC.............................................................................................................................................................................................................................................................................................................................2511.0010000000001
........................................................................................................................................................................................................................AACCGAAACCACAGAGAACACC------AC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................GCCGAACAGATCAAGAACAAGTCGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................................................................................................................CCGAAACCACAGAGAACACC------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
........................................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---C................................................................................................................................................................................................................................................................................................................................1811.0010000000001
......................................................................................................................................................................................................................................................................................................................................GAGACCG---AGACTGTTGTAG---CAGCCGCA.........................................................................................................................................................................................................................................................................................................................2711.0010001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------.......................................2911.0010000000001
....................................................................................................................................................................................................................................................................................................................................ATGAGACCG---AGACTGTTGT......................................................................................................................................................................................................................................................................................................................................1911.0010000000001
........................................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---CA...............................................................................................................................................................................................................................................................................................................................1911.0010000001000
.....G------AGTCCTCTGAGGCCGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................TTGTAG---CAGCCGCAGAGTTAG..................................................................................................................................................................................................................................................................................................................2111.0010100000000
CCGCCG------AGTCCTCTGAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................CAACAACCG------------A---A---AACGAAACCGAAACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...................................AAGAACAAGTCGCAAATTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................AAACCACAGAGAACACC------ACATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
....................GAGGCCGAACAGATCAAGAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
..................................................................................................................TC------CAACGCACA---ACA---CAAC----------AACAACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AGAAGCTCAAGTCGTTGA............1911.0010000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCAAGTCGTTGAGGC.........2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................G---AGACTGTTGTAG---CAGCCGCAGAGTTAG..................................................................................................................................................................................................................................................................................................................2811.0010100000000
...................................................................................................................................................................................................................AACGAAACCGAAACCACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------AAGA-----AGAA..........................2011.0010000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------..................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................ACAACAACCG------------A---A---AACGAAACCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
........................................CAAGTCGCAAATTGAGGTAAACCCC----------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
..................CTGAGGCCGAACAGATCAAGAACAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
........................................................................................................................................................................................................................................................................................................................................GACCG---AGACTGTTGTAG---CAGCCGCAGA.......................................................................................................................................................................................................................................................................................................................2711.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCAAGTCGTTGAGGCA........2111.0010100000000
..................................................................................................................................................................................................................................ACAGAGAACACC------ACATCA---ACTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
..........................................................................................................TCAACTCCTC------CAACGCACA---ACA---CAAC----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....CG------AGTCCTCTGAGGCCGAACAGATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...................................................................................................................................................................................................................................................................................................................................TATGAGACCG---AGACTGTTGTA.....................................................................................................................................................................................................................................................................................................................................2111.0010000000001
...............................................CAAATTGAGGTAAACCCC----------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------AAGA-----AGAAGCT.......................2411.0010000001000
............................................................................................................AACTCCTC------CAACGCACA---ACA---CAAC----------AACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
............AGTCCTCTGAGGCCGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................CTGAGGCCGAACAGATCAAGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACC---------------------AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-..........................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................CACTACA------------AAA---A-------------------------------CCACCTATGAGA......................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.......................................................................................................................................................................................................................................................................................................................................AGACCG---AGACTGTTGTAG---CAGCC............................................................................................................................................................................................................................................................................................................................2311.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AGCA---G---A------------AGCAG---------C...................................................................................................................2811.0010100000000
..GCCG------AGTCCTCTGAGGCCGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................CTC------CAACGCACA---ACA---CAAC----------AACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------------A---CGAT------------------CC-----TC----------------------------CAGGC-AG........................................................................................................................................................1911.0010100000000
..................................................................................................CACCACTTTCAACTCCTC------CAACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................A---AACGAAACCGAAACCACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................GAACAAGTCGCAAATTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGC-AGCA---G---A------------AGCAG---------CAG--------------------------------------------------------------------------.......................................1920.5010000010000
droWil2
CCGCTG------AATC---CGAGGCCGAGCAAATCAAGAACAAGTCGCAAATTGAGGTAAACCA-------------------AATAGACATCACACCC-T--------------CTAACAACAACG---C---ACA---CAACAACA----ACAACGACACTGTAAATACGAGTACAAAAACATTAACAA------------C------AGA---AACAGAAACCACCGAAACAAC------------------AACAATAATAACA------------ACA----------------------------------ACAGCCACTGAGACCG---AAACCACCATTG---CAGCCGCAGATTTAGTTCAGACCCTAA---CCAAC------A---------------CCACCACCAC------------CACCACC---AAT------A---CAGT------------------CCCAACAATCCCACCACCT-------------AGCCACA-----------------------------------------------------------------CCACTGACACCAACAACACAAACATCACAGATA---------CTT-----TGCCAGGCGAAGAAGAAGAACAAGTGGTCCAAGCAATTATTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..GCTG------AATC---CGAGGCCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.50300102
................................................................................................................................................................................................................................................................................................................................GCCACTGAGACCG---AAACCACC........................................................................................................................................................................................................................................................................................................................................2121.00220000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAACAAGTGGT...............2021.00200200
..................................CAAGAACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.00201010
..............................AAATCAAGAACAAGTCGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00200200
...........................................................................................................................................................................................................C------AGA---AACAGAAACCACCGAAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100010
..............................AAATCAAGAACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50101000
.....................................GAACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000
....................................AGAACAAGTCGCAAATTGAGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100001
...................CGAGGCCGAGCAAATCAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100100
..................................CAAGAACAAGTCGCAAATTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
...............................AATCAAGAACAAGTCGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TGCCAGGCGAAGAAGAAGAACAAGT..................2620.50100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGAACAAGTGGTCCAA...........2220.50101000
...................................AAGAACAAGTCGCAAATTGAGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100
..........................................................................................................................................................................................................................................................................................................................................CCG---AAACCACCATTG---CAGCCGCA.........................................................................................................................................................................................................................................................................................................................2320.50101000
...........................................................................................................................................................................................................C------AGA---AACAGAAACCACCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000
.......................................ACAAGTCGCAAATTGAGGTAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100010
...........................AGCAAATCAAGAACAAGTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100100
...................................AAGAACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100100
..GCTG------AATC---CGAGGCCGAGCAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA---------CTT-----TGCCAGGCGAAGAAGAAGAA.......................2720.50100100
.............................................................CCA-------------------AATAGACATCACACCC-T--------------CTAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAAGAAGAAGAACAAGTGGTCC.............2520.50100100
...................................AAGAACAAGTCGCAAATTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000
.CGCTG------AATC---CGAGGCCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA---------CTT-----TGCCAGGCGAAGAAG............................2220.50100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGGCGAAGAAGAAGAACAAGT..................2520.50100100
.........................................................................................................................ACAACG---C---ACA---CAACAACA----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010
..........................................................................................................................................................................................AACAA------------C------AGA---AACAGAAACCACCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100010
..........................................................................................................................................................AACGACACTGTAAATACGAGTACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100
.......................................................................................................................................................................................................................................................................................................................................................................GATTTAGTTCAGACCCTAA---CCAAC------A---------------........................................................................................................................................................................................................................................................................2520.50101000
droVir3
TCGCCGAATCCGAGAC---CGAGGCCGAGCTAATTAAGAACAAGTCGCAAATCGAGGTAAAACAA----C-----AACA----ACTAGACACC-------------------------------------------------ACAGCAAACAACCAGAACACTGTAAATACGAGTATCACAACAACAACAA------------C------AAG---AACCACAGCCACTGAGAACACC------ACAAT-------------------------------------------------------------------CACAATCACTGAGACAG---AGACCATTG------CCGCCGCAGAGTTAGTTCAGACCCAAT---CAACCAACACCCAAAATAACACAATAC---CTAACAT------CACCACCACCAACACCAAG------A---CCACCACCGACAATTCCGTTTATC-----TTCCCACCTCCC-------------AAGCGCAGGAC----------GAAGTGC--------------------------------------------------------------------------------------------------AAGC-----CGACGCCGACGCCGACGC------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................AG---AGACCATTG------CCGCCGCAGA.......................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
.......................................ACAAGTCGCAAATCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000010010000000000000000000000000
.............................................................................................................................................................................................AA------------C------AAG---AACCACAGCCACTGAGAACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................CACAGCCACTGAGAACACC------............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AA------------C------AAG---AACCACAGCCACTGAGAACACC------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACCTCCC-------------AAGCGCAGGAC----------GAAGTG..........................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CATTG------CCGCCGCAGAGTTAG..................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................CGCCGCAGAGTTAGTTCA..............................................................................................................................................................................................................................................................................................................1811.001000000000000000000100000000000000000000000000000000000000000000
...............................AATTAAGAACAAGTCGCAAATCGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CAACAA------------C------AAG---AACCACAGCCACTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CACTGAGACAG---AGACCAT.........................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCACCGACAATTCCGTT.......................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................CACTGAGAACACC------ACAAT-------------------------------------------------------------------CA..................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................CGCCGCAGAGTTAGTTCAGACCC.........................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
.CGCCGAATCCGAGAC---CGAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CATTG------CCGCCGCAGAGTTAGTTC...............................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AAG---AACCACAGCCACTGAGAACACC------ACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................AGACACC-------------------------------------------------ACAGCAAACAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCC-------------AAGCGCAGGAC----------GAAGT...........................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAC----------GAAGTGC--------------------------------------------------------------------------------------------------AAGC-----CGACGCC.......................2511.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGC..........................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCC-------------AAGCGCAGGAC----------................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................CAGAACACTGTAAATACGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCTCCC-------------AAGCGCAGGA...........................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAC----------GAAGTGC--------------------------------------------------------------------------------------------------AAGC-----CGACG.........................2011.001000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGCAGAGTTAG..................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGCAGA.......................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AG---AGACCATTG------CCGCCGCAGAG......................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................G---AGACCATTG------CCGCCGCAGAG......................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAG------A---CCACCACCGACAG..............................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.........................CGAGCTAATTAAGAACAAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCC-------------AAGCGCAGGA...........................................................................................................................................................1811.001000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AAG---AACCACAGCCACTGAGAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ACC------ACAAT-------------------------------------------------------------------CACAATCACTGAGACA....................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AG---AGACCATTG------CCGCCGCAGAGTT....................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ACAG---AGACCATTG------CCGCCGCA.........................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CCCAAT---CAACCAACACCC.......................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-------------AAGCGCAGGAC----------GAAGTG..........................................................................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AAG---AACCACAGCCACTGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................ACAAGTCGCAAATCGAGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................ACAACAACAA------------C------AAG---AACCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000000000000000010000000000000000000000000000000000
droMoj3
C----------GAGTC---TGATGCCGAGCAAATTAAGAACAAGTCGCAAATTGAGGTAAAACAA------------CA----ACTAG------------------------------------------------------ACAACA----CAAACAACACTGTAAATACGAGTACCACCACAACAACAA------------C------AAC---AACAAACGCCACTGAGAACAAC--------ACTG----------------------------------------AA-------------------------AAAACCACAGAGACCG---AAACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAC---AAGCCAACTCCCAAAATAACACACTACCACCTAACAC------------AACCGAC------------A---CAACCACCGACAATTCCGCTTATC-----TTCCCACCTCCC-------------AAGCGCAGGAC----------GAAGTGCAAGCGGATGTCG---------CC----------------------------------------------------------------------------------GAAGAAGAACAAGTGGTTGCCGCTATTAT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----------GAAGTGCAAGCGGATGT...............................................................................................................................2014.004100003
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------CC----------------------------------------------------------------------------------GAAGAAGAACAAGTGGTTGCCGCT........2811.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCC-------------AAGCGCAGGAC----------GA..............................................................................................................................................2511.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGCAAGCGGATGTCG---------CC----------------------------------------------------------------------------------................................2111.001000010
...................................AAGAACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC------------A---CAACCACCGACAATTCCGCTTATC-----..............................................................................................................................................................................................2911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................GTTCAGACCCAAC---AAGCCAACC..........................................................................................................................................................................................................................................................................................2211.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGTCG---------CC----------------------------------------------------------------------------------GAAGAAGAACAAGT..................2511.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCC-------------AAGCGCAGGAC----------GAAGTGCA........................................................................................................................................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAAGCGGATGTCG---------CC----------------------------------------------------------------------------------GA..............................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................GTTCAGACCCAAC---AAGCCAACTC.........................................................................................................................................................................................................................................................................................2311.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATC-----TTCCCACCTCCC-------------AAGCGCAGGAC----------................................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................................................................................................................................................TG------CAGCCGCAGAGTTAGTTCA..............................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----TTCCCACCTCCC-------------AAGCGCAGGAC----------................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................AACGCCACTGAGAACAAC--------ACTG----------------------------------------AA-------------------------AAA................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCG---------CC----------------------------------------------------------------------------------GAAGAAGAACAAGTGGT...............2511.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCC-------------AAGCGCAGGAC----------GAAGTGCA........................................................................................................................................2711.001010000
..............................AAATTAAGAACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------GAAGTGCAAGCGGATGT...............................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................TTG------CAGCCGCAGAGTTAGTTCAG.............................................................................................................................................................................................................................................................................................................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAC----------GAAGTGCAAGCGGAT.................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----------GAAGTGCAAGCGGAT.................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCC-------------AAGCGCA..............................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTCG---------CC----------------------------------------------------------------------------------GAAGAAGAACAAGT..................2411.001000001
........................................................................................................................................................................................................................................................TG----------------------------------------AA-------------------------AAAACCACAGAGAC.....................................................................................................................................................................................................................................................................................................................................................1811.001000010
..........................................................................................................................................................................................................................................................................................................................................CCG---AAACAATTG------CAGCCGCAGAGT.....................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................CAGACCCAAC---AAGCCAACTC.........................................................................................................................................................................................................................................................................................2011.001100000
...........GAGTC---TGATGCCGAGCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
.............................................................................CA----ACTAG------------------------------------------------------ACAACA----CAAACAACACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----TTCCCACCTCCC-------------AAGCGCA..............................................................................................................................................................2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAC----------GAAGTGCAAGCGGATGT...............................................................................................................................2211.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------CC----------------------------------------------------------------------------------GAAGAAGAACAAGTGGT...............2111.001100000
................................ATTAAGAACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
......................................AACAAGTCGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------GAAGTGCAAGCGGATGTCG---------CC----------------------------------------------------------------------------------................................2311.001000010
..........................................AGTCGCAAATTGAGGTAAAACAA------------CA----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACCTCCC-------------AAGCGCAGGAC----------................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................ATTG------CAGCCGCAGAGTTAG..................................................................................................................................................................................................................................................................................................................1911.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCTCCC-------------AAGCGCAGG............................................................................................................................................................2011.001100000
............................................................................................................................................................CAACACTGTAAATACGAGTACCACCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................AGTCGCAAATTGAGGTAAAACAA------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----TTCCCACCTCCC-------------AAGCGCAG.............................................................................................................................................................2311.001100000
droGri2
CTGTCG------AGTC---CGAGGCCGAGCAAATTAAGAACAAGTCGCAAATCGAGGTAAAAC-------------------AAATAGACACCACCACC------------------------------AC---AAA---CAACAACA----ACAACAATACTGTAAATACGAGTACCACAACAACAACA---------------------G------------CTACAGAGAACAACAACACCACAAT---------CACAACAACT------------GAA---AAAACAA----------------CAACAACCACAACCACTGAGACCG---AGACAATTG------CAGCCGCAGAGTTAGTTCAGACCCAAACCACAATC------CAAAATAACACAATAC---CTAACACAGCCAATACCACAACCAACACCACAACCAATACCACAACCACCGACAATT-------CC-----GTCCAACTTCCCAACACTACTGTCCAAGCGCAGCA-AGAA---GAAGAAGGGCTCGT---CAACG---------------------------------------------------------------------------CCAATGCCGCCAAG-GAAGAAGAAGAACAAGTGGTTGCTGCCATTATT--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACCAACACCACAACCA.................................................................................................................................................................................................................................2111.00110
...............................................................................................................................................................................ACCACAACAACAACA---------------------G------------CTACAGAGAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110
.............................................................................................................................................................................................................................................................................................................................................................................GTTCAGACCCAAACCACAATC------........................................................................................................................................................................................................................................................................................2111.00110
...........................................................................................................................................................................................ACA---------------------G------------CTACAGAGAACAACAACACCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
...................................................................................AATAGACACCACCACC------------------------------AC---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
............................................................................................................................................................................AGTACCACAACAACAACA---------------------G------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
............................................................................................................................................................................................................................................................................................................................CACAACCACTGAGACCG---AGA.............................................................................................................................................................................................................................................................................................................................................2011.00101
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGCCGCCAAG-GAAGAAGAAG.........................2411.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAACAAGTGGTT..............1811.00110
..............................................................................................................................................................ATACTGTAAATACGAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
...................................................................................................................................................................................................................................................................................................AA----------------CAACAACCACAACCACTGAGACC....................................................................................................................................................................................................................................................................................................................................................2511.00110
....................................AGAACAAGTCGCAAATCGAGGTAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAATACCACAACCACCGA.................................................................................................................................................................................................................2311.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACAAGTGGTTGCTGCCA.......2211.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG---------------------------------------------------------------------------CCAATGCCGCCAAG-G..................................1911.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATACCACAACCAACACC........................................................................................................................................................................................................................................2111.00110
droAna3
-----------G------------------AGGCCGAAAAGGGACAACCAATCGAGGTAAAGAGC----------TTTAC---AACCGACTGCACTACA-C--------------CCAACCACA------------A---CAACAATA----AACACCACACTGTAAATACCAGTACAAGAATAACC------------------------GC---CACAGAAATCACTGAGAACATT------GCACAA---AAAATAACCCGAACC------------GAA---ACTGAAACTGAAACAGAGACAGAGACCA-TTACTAGCACTGGGACAGATGAGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCATCG---AA-GACGTGAAAGCGGAAG------------------------------------------------------------------------------CC-----AGTCAAGC-----CGAGGAGGAAGTGGTAGCGGCCATCATTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAAGTGGTAGCGGCC........1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------------------------------------------------CC-----AGTCAAGC-----CGAGGAGGAAGT..................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTAGCGGCCATC.....1811.001100000
......................................................................................................................................................................................................................................................................................................................................GGGACAGATGAGACCGTTGCAG---CAGCC............................................................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................CTAGCACTGGGACAGATGAGACC...........................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAAGTGGTAGCGGC.........1911.001100000
..................................CGAAAAGGGACAACCAATCGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----CGAGGAGGAAGTGGT...............1811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGAAAGCGGAAG------------------------------------------------------------------------------CC-----A..........................................1911.001000001
.......................................AGGGACAACCAATCGAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droBip1
C----------G------------------AATCCGAGAAAGGACAACCAATCGAGGTAAAGC-------------TCTTAACAAATGACTGCACTACA-C--------------CCAACCACA------------A---CAACAATA----AACACAACACTGTAAATACCAGTACAACAATAACC------------------------GC---CACAGAAATCACTGAGAACATT------GCACAA---AGAATAACCCGAACCCGTACCAGAACAGAT---ACCATAACAGGGACTGAGACAGA-GACTACAACTAGCACTGAGACAG---AGACTGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAG---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------TCACGCAGGCCGACG---AT-GACGTGA-------------------------------------------------------------------------------------------------------------AAGCGGAAGCCGTTACTGTCCCCAGTCASizeHit CountTotal NormTotal
No Reads
droKik1
T----------G------------------AGGCCGAGAAGGGGCAGCAAATTGAGGTAAAG-------------CACACAAGTACAGACAGCACC------------------------------------------------AGCG----AAAACTACACTGTAAATACAACAACAACAACAACC------------------------AC---TACCGAAATCACAGAGAACACT------GCACAC---AGAACAATAACAACA------------GAATTAACAGAAA----------------GAACATGCACAAGCACCAAGACAGAAGCGACCGTTGCAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCGAAAC------------AACCAAC------------A---CGAT------------------CC-----TTTCCACCTCCC-------------AAACGCAGGC-ACCA---G---A------------GGC------------------------------------------------------------------C---ATCAGCAGC-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCTGCGATCATCCASizeHit CountTotal NormTotal
No Reads
droFic1
T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCAACAC---------------------------------ACACAATAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------CTAAAGCAAC---AACCGAATTCACAGAGAACACA------GCACTA---AAAACAATAAGTACA------------GAA---ACCGAAA----------------GAACTTGCACTAGCACTGTGACCG---AGACCGTTGTAG---AAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----CTTCCACCTCCC-------------ACACGCAGGCCAGCA---GC-GAAGTGATTGA---AGCAGTGAC--------------------CAGCATCACC----------------------------ACC---AGCAGCAGC-----AGCCAAGC-----CGAGGAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACTACA-C--------------ACAACAACA------------A---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAACACCAACAAACACAAAAACAAC---AACCGAAATCACAGAAAACACT------GCACTA---AAAACAATAAGTACA------------GAA---ACCGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAT---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA-------------TTGA---AGCAGTTAC--------------------CACGACCACT----------------------------ACC---------ACT-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------AGAACGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCACA------------------------------CA---CAG---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAGA---------------------AC---AACCGAAATCACAGAAAACACT------GCACTA---AAAACAATAAATACA------------GAA---ACAGAAA----------------GAACTTGCACAGGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---AT-GA------------AGCAGT------------------------------------------------------------TACC---------ACC-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droBia1
T----------G------------------AGACCGAGAAGGGACAGCAAATTGAGGTAAACAACACAGCA----AACACAAGAACAGACTGCACCACA-----------------CAACAACAA----CA---ACA---CTACAGCA----AAAACTCCACTGTAAATACAAGTACAACAACAACAACAGCA---------ACTAAAACCAC---AACTGAAATCACAGAGAACACT------GCACTT---AAACAAATAAGTACC------------GA----------------------------------CACAAGCACTGTGACCG---AGACCTTAGTAGCCGCAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---AC-GAGGTGATTGA---AGCAGCAGCAGCGGCAGTAGAAGCAGCGGCAGCCGCAGCA------------------------GTGGCCGCCACCAGCAGC-----AGCCAGGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droTak1
-----------G------------------AGACCGAGAAGGGACAACAAATTGAGGTAAACAAC-------AAGCACACAAGAACAGACAGCACCACCAC--------------A-------------CAAGAACA---CAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAACAA------------A---AACCAC---AACCGAAATCACAGAGAACACT------GCACTAGAAAATACTAAAAGTACA------------GAA---ACAGAA-------------------------ACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCAGCAGC-GAAGTGATTGA---AGCAG---------CAG---------------------CA------------------------GTGTCC---------ACC-----AGCCAAGC-----GGAGGAGGAAGTTGTGGCGGCGATCATCAASizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----CAAAACCACACAAGAACAGACAGCACCACA------------------------------CA---ACA---CAACAGTA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------C------AAC---AACCGAAATCACAGAAAACACT------GCACTA---AAAACAATAAGTACA------------GAA---ACAGAAA----------------GAACATGCACAAGCACAGTGACCG---AGACCGTTCTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---AC-GAAGTGATTGAAGAAGCAGT------------------------------------------------------------GACC---------AAC-----AGCCAGGC-----GGAGGAGGAAGTTGTGGCGGCTATTATCAASizeHit CountTotal NormTotal
No Reads
dm3
------------------------------AGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAACACCACA------------------------------CA---ACA---CAACAGCA----AAAACATCACTGTAAATACAAGTACAACAACAACAAAA---------------------AC---AACCGAAATCACAGAGAACACT------GCACTA---AAAACAATAAGTACA------------GAT---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACAAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCAATCATCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
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OSC		V145
S2		V146
S1		V147
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mbn2		GSM1528798
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AGCCAAGC-----GGAAGAGGAAGTTGT...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................ATCGAGAAGGGACAGCAAATTGAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------C..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGC-----GGAAGAGGAAGTTG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................CAGCA----AAAACATCACTGTAAATAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ACAAGAACAGACAACACCACA------------------------------CA---ACA---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GCA----AAAACATCACTGTAAATACAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTAGTTCAGACCCAAA---CAATC------C---------------TAAC....................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AAAACATCACTGTAAATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGAGTTAGTTCAGACCCAAA---C..................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AAGCACTGTGACCG---AGACCGTTGT......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GT-GAAGTGATTGA---A.................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GCA----AAAACATCACTGTAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
----------------------GGCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCACA------------------------------CA---ACA---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------C------AAAAACAACCGAAATCACAGAGAACACT------GCACTA---AAAACAATAAGTACA------------GAT---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACAAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCGATCATCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................GGCCACGGAGATCGAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000200000
.................................................................................................................................................................................................................................................................CAATAAGTACA------------GAT---ACAGAAA----------------GAACT......................................................................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
.........................................................................................................................................................................................................................................................................................AT---ACAGAAA----------------GAACTTGCACAAGCACT..........................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
..........................ACGGAGATCGAGAAGGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
........................CCACGGAGATCGAGAAGGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGC-----GGAAGAGGAAGTTGTGGCAGCG........2711.00100010000000000000
...............................................................................................................................................................................................................................................................AACAATAAGTACA------------GAT---ACAGAAA----------------GAACT......................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..............................................................................ACAAGAACAGACAGCACCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----A..........................................2811.00100000001000000000
...................................................................................................................................................................................................................................................................ATAAGTACA------------GAT---ACAGAAA----------------GAACTT.....................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................ACCG---AGACCGTTGTAG---CAGCC............................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................CACAGAGAACACT------GCACTA---AAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-----GGAAGAGGAAGTTGTGGCAG..........2211.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC------------A---CGAT------------------CC-----TTCCCACCTCC...................................................................................................................................................................................2211.00100100000000000000
..........................................................................................................................................................................................................................................................................................T---ACAGAAA----------------GAACTTGCACAAGCACTG.........................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
......................GGCCACGGAGATCGAGAAGGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
................................ATCGAGAAGGGACAGCAAATTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............................GGAGATCGAGAAGGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................CACGGAGATCGAGAAGGGACAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...............................................................................................................................................................................................................................ATCACAGAGAACACT------GCACTA---AA.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.........................................................................................................................................................................................................................ACCGAAATCACAGAGAACACT------............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
..........................................................................................................................................................................................................................................................................................T---ACAGAAA----------------GAACTTGCAC.................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
.........................................................................................................................................................................................................................................................................ACA------------GAT---ACAGAAA----------------GAACT......................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----GGAAGAGGAAGTTGTGGC............2111.00100000000000001000
..............................................................................ACAAGAACAGACAGCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.....................................................................................................................................................................................................................................................................AAGTACA------------GAT---ACAGAAA----------------GAA........................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
.........................CACGGAGATCGAGAAGGGACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---------CCC-----AGCCAAGC-----GGT...........................1620.50100000000001000000
droSec2
----------------------GGCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACAGACAGCACCACA------------------------------CA---ACA---CAACAGCA----AAAACTTCACTGTAAATACAAGTACAACAACAACAAAAA------------C------AAAAACAACCGAAATCACAGAGAACACT------GCACTA---AAAACAATAAGTACA------------GAT---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACAAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCGATCATCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----..............................2611.0010010
....................................................................................................................................................................................................................................................................................................................................CTGTGACCG---AGACCGTTGTA.....................................................................................................................................................................................................................................................................................................................................2011.0010010
......................GGCCACGGAGATCGAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......................GGCCACGGAGATCGAGAAGGGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGAAGTTGTGGCAGCGAT......2311.0011000
................................ATCGAGAAGGGACAGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCC.......................................2611.0010010
...................................................................................................................................................................................................................................................................................................................................................CCGTTGTAG---CAGCCGCAGA.......................................................................................................................................................................................................................................................................................................................1911.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------ACACGCAGGCCAGCA---GT-GAAGTG..........................................................................................................................................2411.0010010
.............................................................................................................................................AACAGCA----AAAACTTCACTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................ACCG---AGACCGTTGTAG---CAG..............................................................................................................................................................................................................................................................................................................................1911.0010010
.............................................................................CACAAGAACAGACAGCACCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...............................................................................................................................................................................................................................................................................................................................................................CAGCCGCAGAGTTAGTTCAGAC...........................................................................................................................................................................................................................................................................................................2211.0010010
...................................................................................................................................................................................................................................................................................................................................................CCGTTGTAG---CAGCCGCAGAGTTAGT.................................................................................................................................................................................................................................................................................................................2511.0010010
.................................................................................................................................................................................................................................................................................................GAAA----------------GAACTTGCACAAGCA............................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................AGGGACAGCAAATTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............................................................................ACACAAGAACAGACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................................CCGAAATCACAGAGAACACT------............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAGCA---GT-GAAGTGATTGA---AACA..............................................................................................................................2611.0010010
.....................................GAAGGGACAGCAAATTGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...................................................................................................................................................................................................................................................................ATAAGTACA------------GAT---ACAGAAA----------------...........................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---------CCC-----AGCCAAGC-----GGAAGAGGAAG...................2411.0010010
...................................GAGAAGGGACAGCAAATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.............................................................................................................................................................................................................................................................AAAACAATAAGTACA------------GAT---ACAGAAA----------------G..........................................................................................................................................................................................................................................................................................................................................................................2611.0010010
droYak3
----------------------GGCCACGGAGATCGAGAAGGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACCGACAGCACTACA------------------------------CA---ACA---CAACAGCA----AAAACAACACTGTAAATACAAGTACAACAACAACAAAA---------------------AC---AACCGAAATCACAGAGAACACT------GCACAA---AAAACTATAAGTACA------------GAA---ACAGAAA----------------GAACTTGCACAAGCACTGTGACTG---AGACCGTTGTAG---TAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------GACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCAATCATCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................GAGATCGAGAAGGGACAGCAAATTGAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29116.0016000000000016
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GGAAGAGGAAGTTGTGGC............1911.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GGAAGAGGAAGTTGTGG.............1811.00101000000000
...........................................................................................................................................................................................................................................................................................................................................TG---AGACCGTTGTAG---TAGCCGCAGAG......................................................................................................................................................................................................................................................................................................................2511.00101000000000
...................................................................................................................................................................................................................................CAGAGAACACT------GCACAA---AAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................AGAGTTAGTTCAGACCCAAA---CA.................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................TGTAG---TAGCCGCAGAGTTAGTT................................................................................................................................................................................................................................................................................................................2211.00100010000000
...................................GAGAAGGGACAGCAAATTGAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGC-----GGAAGAGGAAGTTGTGGC............2411.00100000010000
.......................................................................................................................................................................................................................................................................GTACA------------GAA---ACAGAAA----------------GAACTTGC...................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GGAAGAGGAAGTTGTGGCA...........2011.00100100000000
droEre2
----------------------GGCCACGGAGATCGAGAAAGGACAGCAAATTGAGGTAAACAAC----------CACACAAGAACTGACAGCACCACA------------------------------CA---ACA---CAACAGCA----AAAACCACACTGTAAATACAAGTACAACAACAACAAAA---------------------AC---AACTGAAATCACAGAGAACACT------GCACTA---AAAACTATAAGTACA------------GAA---ACAGAAA----------------GAACTTGCACAAGCACTGTGACCG---AGACCGTTGTAG---CAGCCGCAGAGTTAGTTCAGACCCAAA---CAATC------C---------------TAACCAAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCCACCTCCC-------------ACACGCAGGCCAGCA---GT-GAAGTGATTGA---AACAGT------------------------------------------------------------AACC---------CCC-----AGCCAAGC-----GGAAGAGGAAGTTGTGGCAGCAATCATCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAAAC------------AACCAAC------------A---CGAT------------------.....................................................................................................................................................................................................2111.0010000010
..............................................................................................................................................................................................................................................................................................................................CAAGCACTGTGACCG---AGACC...........................................................................................................................................................................................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................GTTGTAG---CAGCCGCAGAGTTAGTTC...............................................................................................................................................................................................................................................................................................................2511.0010000100
.......................................................................................................................................................................................................................................................................GTACA------------GAA---ACAGAAA----------------GAACTTGCA..................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.......................GCCACGGAGATCGAGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
......................GGCCACGGAGATCGAGAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAC------------AACCAAC------------A---CGAT------------------CC-----TTCCC.........................................................................................................................................................................................2411.0010001000
....................................................................................................................................................................................................................................................................................................................................................................GCAGAGTTAGTTCAGACCCAAA---CA.................................................................................................................................................................................................................................................................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA---AACAGT------------------------------------------------------------AACC---------CCC-----AGCCAAG....................................2411.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGATTGA---AACAGT------------------------------------------------------------AACC---------CCC-----...........................................2211.0010000010
...............................................................................................................................................................................................................................ATCACAGAGAACACT------GCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
......................................................................................................................................................................................................................................................................................................................................GTGACCG---AGACCGTTGTAG---C................................................................................................................................................................................................................................................................................................................................2011.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGCA---GT-GAAGTGATT.......................................................................................................................................1911.0010000010
............................................................................................................................................................................................AA---------------------AC---AACTGAAATCACAGAGAACACT------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.....................................................................................................................................................................................................................................................................................................................GAACTTGCACAAGCACTGT........................................................................................................................................................................................................................................................................................................................................................1911.0010000010
........................................................................................................................................................................................................................................................................................................................................GACCG---AGACCGTTGTAG---C................................................................................................................................................................................................................................................................................................................................1811.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGC-----GGAAGAGGAAGTTGTGGCA...........2511.0011000000
.........................................GGACAGCAAATTGAGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1411000000
..................................................................................................................................................................................................................................................................................................AAA----------------GAACTTGCACAAGAC............................................................................................................................................................................................................................................................................................................................................................18100.1010001000

Generated: 06/08/2015 at 04:36 PM