ID:

dpe_1740

 Coordinate:

scaffold_5:783430-783580 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.1 -37.2 -37.2 -37.1

Flybase annnotation

exon [dper_GLEANR_8460:7]; CDS [Dper\GL25911-cds]; intron [Dper\GL25911-in]; Antisense to intron [Dper\GL25837-in]

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAACGCGAGAAGATGAGGAACCTCACGGCGGAGACAAACACCATCGCTGGGTCTGCCACCACAGCAGCAGCACCACCACACATGAGCAGCGGCAGCAGCAGCACACCAGCTGCACCGCCAGCAGCAACAGCAGCAGCAGCGGCTGTGCCGGTTCCGTCTGCCGGCAGCAACGATCTCGGGGAGAAGCTGGAGAAGCTATCGAAGGAAGAGAGGCACCGTTTGAAAAAGTCGAAGAAATCCAAGAGTTTGGA
**********************************************************************..((...........((..((((((.(((.(((((((.(((((...((..((.......)).)).))))))).)))))..)))....))))))...)).........))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V111
male body		 M042
female body
 V042
embryo
 V057
head
...........................................................................................................................................................GTCTGCCGGCAGCAACGATCTCGG........................................................................ 24 0 1 2.00 2 2 0 0 0 0
..................................CAAACACCATCGCTGGGT....................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
...CGCGAGAAGATGAGGAAC...................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
........................................................................................................................................................................AACGATCTCGGGGAGAAGCTGGAGG.......................................................... 25 1 1 1.00 1 1 0 0 0 0
................................GACAAACACCATCGCTGGGTCT..................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
......................................................................CACCACCACACATGAGCAGCGGC.............................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0
.......AGAAGATGAGGAACCTCACGGCGGAGAC........................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................................CGAAGGAAGAGAGGCACCGTTTG............................. 23 0 1 1.00 1 0 1 0 0 0
..............................................................................CACATGAGCAGCGGCAGCA.......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0
...........................................................................................................................................................................GATCTCGGGGAGAAGCTGGAGA.......................................................... 22 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................CAACGATCTCGGGGAGAAGCT............................................................... 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................AGCAACGATCTCGGGGAGA................................................................... 19 0 1 1.00 1 0 0 0 1 0
........GAAGATGAGGAACCTCACGGC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0
.................................................................................................................................................................................................................................AAGTCGAAGAAATCCAAGAGTTT... 23 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................................ACCGGTTGAAAAAGTCGG................... 18 2 3 0.33 1 0 0 0 0 1
...........................................................................................................................................................................................................................TTGAAAAAGTCGGAGAAA.............. 18 1 4 0.25 1 0 0 1 0 0
..................AACCTCACGGCGGAGATC....................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1
........................................................................................................................GCAGCAACAGCAGCAGCAGCGG............................................................................................................. 22 0 8 0.13 1 1 0 0 0 0
.....................................................................................................................................................................................................................CACCTGTTGAAAAAGTCGGA.................. 20 3 9 0.11 1 0 1 0 0 0
.................GAACCTCACGGCGGAGTT........................................................................................................................................................................................................................ 18 2 15 0.07 1 0 0 0 0 1
.......................................................................................................................................................................................................CGAAGGACGAGAGGAACCG................................. 19 2 20 0.05 1 0 0 0 1 0
.................................................................................................................ACCGGCAGCAGCAACAGCAGCAGC.................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TTTGCGCTCTTCTACTCCTTGGAGTGCCGCCTCTGTTTGTGGTAGCGACCCAGACGGTGGTGTCGTCGTCGTGGTGGTGTGTACTCGTCGCCGTCGTCGTCGTGTGGTCGACGTGGCGGTCGTCGTTGTCGTCGTCGTCGCCGACACGGCCAAGGCAGACGGCCGTCGTTGCTAGAGCCCCTCTTCGACCTCTTCGATAGCTTCCTTCTCTCCGTGGCAAACTTTTTCAGCTTCTTTAGGTTCTCAAACCT
************************************************************************..((...........((..((((((.(((.(((((((.(((((...((..((.......)).)).))))))).)))))..)))....))))))...)).........))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
..........................................................................................CCGTCGTTGACGTGTGGTCGAA........................................................................................................................................... 22 3 5 0.20 1 1
...........................................................................GGTGTGTACTCGAGGGCGTCG........................................................................................................................................................... 21 3 5 0.20 1 1
.............................................................................................................................................GGACACGGCCAATGCACACG.......................................................................................... 20 3 8 0.13 1 1
....................................................GAAGGTGGTGGCGTCGTC..................................................................................................................................................................................... 18 2 18 0.06 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_5:783380-783630 + dpe_1740 AAA----CGCG------AGAA----GATGAG-----GAACCTCA-----CGGCGGAGACAAACA---------------CCATCGC-----------------------------------------------------------TGGGTCTGCCACC---------------------------------A---------------------------CAGCAG---CAGCACCACC---ACACATG--AGCAGCG------GCAGCAGCAGCAC-------ACCAGCTGCACCG------------CCAGCAGCAACAGCAGCA------------------------GCAGC---GGCTGTGCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCG------TCTGCCGGC------AGCAACGATCTCGGGGAGAAGC--------TGGAGAA---------------------------------------------GCTATCGAAGGAAG---------AGAGGCACCGT---------TTGAAAAAGTCGAAGAAAT-CCAAGA--GTTTGGA
dp5 4_group1:4426671-4426921 - dps_1419 AAA----CGCG------AGAA----GATGAG-----GAACCTCA-----CGGCGGAGACAAACA---------------CCATCGC-----------------------------------------------------------TGGGTCTGCCACC---------------------------------A---------------------------CAGCAG---CAGCACCATC---ACACATG--AGCAGCG------GCAGCAGCAGCAC-------ACCAGCTGCACCG------------CCAGCAGCAACAGCAGCA------------------------GCAGC---GGCTGTGCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCG------TCTGCCGGC------AGCAACGATCTCGGGGAAAAGC--------TGGAGAA---------------------------------------------GCTATCGAAGGAAG---------AGAGGCACCGT---------TTGAAAAAGTCGAAGAAAT-CCAAGA--GTATGGA
droWil2 scf2_1100000004516:2323131-2323366 + dwi_1155 AAA----CGTG------AGAA----ATTGAG-----GAATTTGGCTG-GCGGCG-AAACGAATTTTACCACCA---CTTCGAATGC--------------------------------------------------------------------CATT---------------------------------G-----------------------GCAGCAATAG---CAATGCCATT------TGTGGTGTTCCCAGTGGTGCTA------CTAATGCCACCACCAG---CA----------------CGACAACAACAGCAACA------------------------TCAAC---------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------CACT------ACCAACGATATC-----------------------------------------------------------AGCAGCGAGAAACTGTCCAAAGAGG---------AGAGACATCGT---------CTCAAGAAATCAAAGAAAT-CCAAAA--GTTTGGA
droVir3 scaffold_13052:1898225-1898488 - AAA----AGCA------GCAA----CATCAA-----CAACAGC-------------------------------------------CG-----------------------CTGCAGCAGCAGCACCAACAACAGCCACCGTAGCAGCCGCTGCAGCT---------------------------------TCAGCAGTCGCAGCAGCAG--------------------------------CACAGC--AACATCA------ACAGCAACAGC---------AACAGCCGCAGCA------------GCAGCAGCAGCAGCAGCA------------------------GCAGC---AGCAG---------------TAATT-----------------------------------------------------------------AG-----------------------------------------------------------------------------------CTGC-------------AGCAGCAGCAGCAGCAGCAGCAGTAATTAGC--------TGCAGCAGCAGCAGCCGCAGCA--------------------------------------G-CAGC---------AGCAGCCGCAG---------CAGCAG-----CAGCAGCC-GCAGCA--GCAGCAG
droMoj3 scaffold_6473:10519260-10519511 - CAG----CAAC------AGCA----GCAGCA-----ACA--GA----AA----------------CCGCAGCAGCAACA----------AATGCAACAAC---------------------------------------------AGCAATAGCAACT---------------------------------A---------------------------CAGCAG---------------------------------------------------------------CAGCAGCAA------------CAGCAGCAGTAGCAACA------------------------ACAGC---AGC------AG----------------------------------CAGCA--------ACAACAGTAGCAGCAGCAGCAGCAGCAACTGTTGCAGCAGCAGCATCAACAGCTGCAACATCAGC--------------------AGTAGCAGCAACAGCAGCAACAGC-----AG-CAACAG--CAA-----TAAC---------------------------------------------------------------------------------------------------------------------AACAG---------TAGCAGCAATCGAAATAGTACTAGGA--GAAACAA
droGri2 scaffold_15203:10125238-10125481 - AAA----CCCG------AAAGTGAAGATGAA-----ATA---------------------AAATAAAGCAGCAGCTGAA----------TGGGAATTCACACAGATAGCAC----------------------------------------AGGAG-----------------------------------------------------------GCAGCAACAG---CAGCAGCAGCAGCA---------GCAGCAGCAACAGCA------GCAACAGCAACAGCAGCAGCAGCA------------ACAGCAGCAACAGCAGCA------------------------GCAGC---AGCTGCGGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCG------ACTA--GGG------AGCAACGAAATCAAAA--------------------------------------------------------------------------AAAAAAAAAAAGA---------AAAA---------GAGAAAAGAAAAAAAAAGC-CGAATG--AAACGAA
droAna3 scaffold_12943:4205216-4205376 - AAG----CGAG------AGAA----GCTGAG-----GAACCTCACCG--------AGGCCAACA---------------GCACCAC-----------------------------------------------------------T------GCGA-----------------------------------------------------------ACAGCAGCA------ACTCCACC------------------------------------------------------------ACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGC----------------CACC------ACCAATGATGT-----------------------------------------------------------GACTTCAGAGAAACTCTCCAAAGAAG---------AGCGCCACCGG---------CTGAAGAAGTCGAAGAAGT-CCAAGA--GCCTGGA
droBip1 scf7180000395973:424883-425046 - AAG----CGCG------AGAA----GCTGAG-----GAATCTCACCG--------AGGCCAACAGTGCCACCA---CAGCG--------------------------------------------------------------------------A-----------------------------------------------------------TTGGCGGCA------ACTCCACC------------------------------------------------------------GCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGC----------------CACA------CCCAACGATGT-----------------------------------------------------------GACATCCGAGAAGCTCTCCAAGGAGG---------AGCGCCACCGG---------CTGAAGAAGTCGAAGAAGT-CCAAGA--GCCTGGA
droKik1 scf7180000302273:156772-156941 + AAG----CGCG------AGAA----GCTGAG-----GAACCTCACAG--------AGACCAACG---------------CAACCGT-----------------------------------------------------------TGGAAGCGTGACC---------------------------------A---------------------------CAGTA-----AACACAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCT-----------------CCAAT--GGTTACAAATGA----GGTGATTAGC----------------------------------------------------TCTGAGAAACTTTCCAAGGAGG---------AGCGTCATAGA---------CTGAAAAAGTCCAAGAAAT-CCAAGA--GTTTGGA
droFic1 scf7180000453829:273506-273744 + AGG----TGA-------AGAA----GCTGCA-----GGAGGA-------GGACGGTG-------------CCA---CGCCCACCACTGCCGTC------------------------------------------------------GGTTCGCCGAC---------------------------------G---------------------------CAGCAGTTGCAGCAACACC---AG--GCG--------G------CCGTCGCTGCCGA-------GGCAGCCGCAGCAG------------CAGCAGCAGCAGCAGCG------------------------GCAGCAGCAGC------GGCTGAGCA-------TTCGCACGCGCACGT-----------------------------------------------------------------------------------CGTCCACGGCCACAATCCGCAGCAGCAGCAACAGCAGCAGCAGG-----GG-CAACAT--CCG-----CAGC---------------------------------------------------------------------------------------------------------------------------------------------CG---------GGGCA--GCAGGGG
droEle1 scf7180000491087:122462-122746 + AAA----TGCTTCGGCC----------C-AG-----C-------------AGCAACA-------------CCT---CAGCCACCAGCAACA------GCAG----------CAGCAGCAG------------------------------------------------------------------------------------------------CAGCACCAG---CAGC------------------------A------G-----CAACAAC-------TGCAGCAACAGCAG------------CAGCAGCAACAGCAGCAGCAGCAGCATGCCCAGCAGCATGCCCAGC---AAC----------------------------------------TGCAACATG-----CCCAACAGCAGCTGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCACGC-----------------------------------------------------------------CCAG----------------CAGC------AGCAACATGTC---------------------CAGCAGCAACACGCCCTCCA--------------------------------------C-CAGC---------AACACCAACAG---------CTGCATCACGATCCGCAGC-AGCAGC--ACCCGCA
droRho1 scf7180000777610:26159-26467 - TCC----CACG------GCAG----TTTGGGACCCACCAT-CG----TCCAGACGCA-------------CCA---TCTCCACCAGCAACT------CACCCA-------------------------------------------GCCACTGACGCTGCGCAAGAGCAGCCCGCCCACAGAGCACCTGCTCAGCCAGTCCATGCAGCACCTCACCCAGCAGCAG---CAGCTCCACCTGCA---------------------CCA---------------------CCTGCTCGG------------CCAGCAGCAGCAGCAACA------------------------GCAGC---AGCAACAGGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCAT--CCG-----CAGCAGCAGCAG------CACTCGCCCCACTCTTTGGTGCGGGTGAAGAAGGAGCCGAACGTGGGCCAGCGGCA------------------CCTGTCGC---------------------------------------CG-----CACCACCC-GCAACA--GTCGCCG
droBia1 scf7180000302126:3411886-3412152 - GAC----TACG------ACGAG---GACGAG-----GAGGAGGA-----CGAGGAGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCACCAG---CAGCAGCAGCAGCA---------GC---A------GCATCAGCAGGGC-------AAC-----------GGGCAGTG------------------------------------------------------------------------------ACCTCACGCCCACGGACCTGCGACATGTGCTGCC----------------------------------------------------------------CAGCAGCAACCACGATCAGCAGCAGCAGCAACATCAGCAGCAGC-----AG-CAGCAG--CAG-----CAGCAACA---------------GGAGCCCGC--------TGC----------------CTA------------CGATGACGAGGACGAG---------GAGGAGGACGAGGACGA------CG-----------AGGATGAGGACGAGGTGGC-CAGCAGCCACCTGGA
droTak1 scf7180000415394:328996-329222 - GACGAGG---------T-GG-------GGAG--TAGCCACCTG----GACAGCCGTG-------------CCACCCTGT----------CGTCCGCCCACCTAAACAGCGC----------------------------------------TGCGG-----------------------------------------------------------CCGCCGAGAG---CAGCGGTCTC------------------------------CACATGGC-------GGCGGCGGCGGCG------------GCAGCAGCGGCAGCAGCA------------------------GCGGC---GGCGGCAGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC------TCGGCCGCC------A------AGCTGGGTGCCCAGC--------TGGAGCA---------------------------------------------GCA---------------------------GCAGCAGAATGCCGCCAGCAATCCGAATAA----CAATG--CCTTGGA
droEug1 scf7180000408176:347171-347393 + ACA-G--TGTG------GGCA----GACA--------------------------------------------------GAATTGCAACTG------------------------------------------------------------TAATT-----------------------------------------------------------GCAATATCTG---CAACAATATCAACT-----G--C-----A------GCAGCAGCAATTC-------CCC-----------TTGCAACACCAACAGCAGCAGCAACAGCA------------------------GCAGA---GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----AG-CAACACCCCTG-----CAGCAATATTCGGAATGG----AGCGAT------------------TGCTGCACGCAGTTCG------------------------CGAGGAGTTTCAAACGGAGG---------ACGAGTACG-----------AGGAGGAAG----ATGAGG-CGAAAA--CATTGCA
dm3 chr3R:5812889-5813108 + GACCCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAACAG---CAGCACCACCAACAC--ACG--C-----A------CCACCACAATTAC-------GCCGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAATAGCAG------TGCCAACAACATGC--------TGCAGCA---------------------------------------------GCTGTCGCAGC-AG---------AACGTCACAGT---------G----ACGGCGCACCACAG-CCAGCA--GCAGCAG
droSim2 3r:15235927-15236104 - GACCCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAACAG---CAGCACCACCAACAC--ACG--C-----A------CCACCACAACTAC-------GCTGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAATAGCAG------TGCCAACAACATGC--------TGCAGCA---------------------------------------------GCTGTCGCAG--------------------------------------------------------------------
droSec2 scaffold_0:16105035-16105209 - GACCCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAGC------AGCACCACCAACAC--ACG--C-----A------CCACCACAACTAC-------GCTGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAATAGCAG------TGCCAACAACATGC--------TGCAGCA---------------------------------------------GCTGTCGCAG--------------------------------------------------------------------
droYak3 2L:7841415-7841607 - CAT----CA----------------------------------------------------------------------------G-----------------------------------------------------------TCGGCCAGCCGCA---------------------------------A---------------------------CAGCAA---CAGCAACAGC---A-ACAGC--AGCAGCA------GCAACAGCAGCAACAGC---AACAGCAGCAGCA------------ACAGCAGCAACAGCAGCA------------------------GCAGC---AACAGCAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCA------ACTGCC------------AGCGATGG-----------------------------------------------------------ACTTGGGGACTAATTGT---GGGCAG---------AAAGCAAAAAA---------CAGCTGCGATCGAGG------GAAAA--GGAGAGA
droEre2 scaffold_4770:15789588-15789782 - GAACCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAGCAG---CAGCACCACCAACAC--ACG--C-----A------CCACCACAACTAC-------GCCGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGCAGCAGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAACAACAG------TGCCAACAATATGC--------TGCAGCA---------------------------------------------GCTGTCGCAGC-AA---------------------------------------------------AATG--TCACAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AAA----CGCG------AGAA----GATGAG-----GAACCTCA-----CGGCGGAGACAAACA---------------CCATCGC-----------------------------------------------------------TGGGTCTGCCACC---------------------------------A---------------------------CAGCAG---CAGCACCACC---ACACATG--AGCAGCG------GCAGCAGCAGCAC-------ACCAGCTGCACCG------------CCAGCAGCAACAGCAGCA------------------------GCAGC---GGCTGTGCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCG------TCTGCCGGC------AGCAACGATCTCGGGGAGAAGC--------TGGAGAA---------------------------------------------GCTATCGAAGGAAG---------AGAGGCACCGT---------TTGAAAAAGTCGAAGAAAT-CCAAGA--GTTTGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TCTGCCGGC------AGCAACGATCTCGG..................................................................................................................................................2412.002200000
..........................................................CAAACA---------------CCATCGC-----------------------------------------------------------TGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.......CGCG------AGAA----GATGAG-----GAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATCTCGGGGAGAAGC--------TGGAGG............................................................................................................................2511.001100000
........................................................GACAAACA---------------CCATCGC-----------------------------------------------------------TGGGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.......................................................................................................................................................................................................................................CACCACC---ACACATG--AGCAGCG------GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................AGAA----GATGAG-----GAACCTCA-----CGGCGGAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGAAG---------AGAGGCACCGT---------TTG................................2311.001000001
..................................................................................................................................................................................................................................................CACATG--AGCAGCG------GCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGGGGAGAAGC--------TGGAGA............................................................................................................................2211.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATCTCGGGGAGAAGC--------T.................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGATCTCGGGGAGA.............................................................................................................................................1911.001001000
..................GAA----GATGAG-----GAACCTCA-----CGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGAAGAAAT-CCAAGA--GTTT...2311.001000001
.....................................AACCTCA-----CGGCGGAGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.141000010
.......................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCA------------------------GCAGC---GG.......................................................................................................................................................................................................................................................................................................................................................................2280.131100000
....................................GAACCTCA-----CGGCGGAGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.071000010
dp5
AAA----CGCG------AGAA----GATGAG-----GAACCTCA-----CGGCGGAGACAAACA---------------CCATCGC-----------------------------------------------------------TGGGTCTGCCACC---------------------------------A---------------------------CAGCAG---CAGCACCATC---ACACATG--AGCAGCG------GCAGCAGCAGCAC-------ACCAGCTGCACCG------------CCAGCAGCAACAGCAGCA------------------------GCAGC---GGCTGTGCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCG------TCTGCCGGC------AGCAACGATCTCGGGGAAAAGC--------TGGAGAA---------------------------------------------GCTATCGAAGGAAG---------AGAGGCACCGT---------TTGAAAAAGTCGAAGAAAT-CCAAGA--GTATGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................CACCATC---ACACATG--AGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................GGCTGTGCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCG------TCTG...........................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGGAAG---------AGAGGCACC..............................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................GCAACAGCAGCA------------------------GCAGC---GGC......................................................................................................................................................................................................................................................................................................................................................................20200.0510010000000
droWil2
AAA----CGTG------AGAA----ATTGAG-----GAATTTGGCTG-GCGGCG-AAACGAATTTTACCACCA---CTTCGAATGC--------------------------------------------------------------------CATT---------------------------------G-----------------------GCAGCAATAG---CAATGCCATT------TGTGGTGTTCCCAGTGGTGCTA------CTAATGCCACCACCAG---CA----------------CGACAACAACAGCAACA------------------------TCAAC---------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------CACT------ACCAACGATATC-----------------------------------------------------------AGCAGCGAGAAACTGTCCAAAGAGG---------AGAGACATCGT---------CTCAAGAAATCAAAGAAAT-CCAAAA--GTTTGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................A----ATTGAG-----GAATTTGGCTG-GCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200110
...........................................................................................................................................................ATT---------------------------------G-----------------------GCAGCAATAG---CAATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
.........................ATTGAG-----GAATTTGGCTG-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAACTGTCCAAAGAGG---------AGA....................................................2212.00201100
..................GAA----ATTGAG-----GAATTTGGCTG-GCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200
....................A----ATTGAG-----GAATTTGGCTG-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATC-----------------------------------------------------------AGCAGCGAGAAACT...........................................................................1911.00101000
...................AA----ATTGAG-----GAATTTGGCTG-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAACTGTCCAAAGAGG---------AGA....................................................2311.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGG---------AGAGACATCGT---------CTCA...............................2211.00100100
.....................................................G-AAACGAATTTTACCACCA---CTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..................GAA----ATTGAG-----GAATTTGGCTG-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
......................................................................CCA---CTTCGAATGC--------------------------------------------------------------------CATT---------------------------------G-----------------------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.........................................................................................................................................................................................................................................................................A------CTAATGCCACCACCAG---CA----------------CGACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
...........................................................GAATTTTACCACCA---CTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
......................................................................................................................................................................................................................................................................GCTA------CTAATGCCACCACCAG---CA----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAACTGTCCAAAGAGG---------AGAGA..................................................2411.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATC-----------------------------------------------------------AGCAGCGAGAAACTGTC........................................................................2211.00100100
......................................................................................................................................................................................................................................................TGGTGTTCCCAGTGGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGG---------AGAGACATCGT---------CT.................................1911.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT------ACCAACGATATC-----------------------------------------------------------AGCAGC...................................................................................2111.00100010
...................AA----ATTGAG-----GAATTTGGCTG-GCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..........G------AGAA----ATTGAG-----GAATTTGGCTG-GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGT---------CTCAAGAAATCAAA.....................1911.00101000
..........................................................................................................................................................................................................................................CATT------TGTGGTGTTCCCAGTGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...........................................................................................................................................................................................................................................ATT------TGTGGTGTTCCCAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................GAG-----GAATTTGGCTG-GCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................................................................................................................................................................ATT------TGTGGTGTTCCCAGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------ACCAACGATATC-----------------------------------------------------------AGCAGC...................................................................................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAGAGG---------AGAGACATCGT---------C..................................2311.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGG---------AGAGACATCGT---------CTCAAGA............................2411.00100100
.....................................AATTTGGCTG-GCGGCG-AAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..........................................................................................................................................................................................................................................CATT------TGTGGTGTTCCCAGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAACTGTCCAAAGAGG---------A......................................................2211.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATATC-----------------------------------------------------------AGCAGCGAG................................................................................1911.00100010
.....................................................................................................................................................................................................................................................................TGCTA------CTAATGCCACCACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
..........................................................................................................................................................................................................................................CATT------TGTGGTGTTCCCAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
droVir3
AAA----AGCA------GCAA----CATCAA-----CAACAGC-------------------------------------------CG-----------------------CTGCAGCAGCAGCACCAACAACAGCCACCGTAGCAGCCGCTGCAGCT---------------------------------TCAGCAGTCGCAGCAGCAG--------------------------------CACAGC--AACATCA------ACAGCAACAGC---------AACAGCCGCAGCA------------GCAGCAGCAGCAGCAGCA------------------------GCAGC---AGCAG---------------TAATT-----------------------------------------------------------------AG-----------------------------------------------------------------------------------CTGC-------------AGCAGCAGCAGCAGCAGCAGCAGTAATTAGC--------TGCAGCAGCAGCAGCCGCAGCA--------------------------------------G-CAGC---------AGCAGCCGCAG---------CAGCAG-----CAGCAGCC-GCAGCA--GCAGCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................CAACAGCCACCGTAGCAGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....................................CAACAGC-------------------------------------------CG-----------------------CTGCAGCAGCAGCACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................CAGCCACCGTAGCAGCCGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................AGCAGCACCAACAACAGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.......................................CAGC-------------------------------------------CG-----------------------CTGCAGCAGCAGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................ACAACAGCCACCGTAGCAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ACAGC---------AACAGCCGCAGCA------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................2050.201000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------CAGCAG-----CAGCAGCC-GCAG...........21200.153003000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA--------------------------------------G-CAGC---------AGCAGCCGCAG---------...................................21200.153003000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAG---------CAGCAG-----CAGCAGCC-GC.............2390.111001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGCA--------------------------------------G-CAGC---------AGCAGCCGC..............................................2390.111001000000000000000000000000000000000000000000000000000000000000
.......AGCA------GCAA----CATCAA-----CAACAGC-------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.111001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ACAGC--AACATCA------ACAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ATCA------ACAGCAACAGC---------AACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA------------------------GCAGC---AGCAG---------------TA...................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGT.................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................C--AACATCA------ACAGCAACAGC---------....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG-----CAGCAGCC-GCAGCA--.......20200.051000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGC--AACATCA------ACAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CA------------GCAGCAGCAGCAGCAGCA------------------------GCAGC---AGCA.....................................................................................................................................................................................................................................................................................................................................................................29200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCC-GCAGCA--GCAGC..18200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------------------G-CAGC---------AGCAGCCGCAG---------CA.................................20200.051000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCCGCAGCA--------------------------------------......................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCA--------------------------------------G-CAGC---------.......................................................18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAG---------CAGCAG-----C.......................18200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCCGCAGCA--------------------------------------G-....................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
droMoj3
CAG----CAAC------AGCA----GCAGCA-----ACA--GA----AA----------------CCGCAGCAGCAACA----------AATGCAACAAC---------------------------------------------AGCAATAGCAACT---------------------------------A---------------------------CAGCAG---------------------------------------------------------------CAGCAGCAA------------CAGCAGCAGTAGCAACA------------------------ACAGC---AGC------AG----------------------------------CAGCA--------ACAACAGTAGCAGCAGCAGCAGCAGCAACTGTTGCAGCAGCAGCATCAACAGCTGCAACATCAGC--------------------AGTAGCAGCAACAGCAGCAACAGC-----AG-CAACAG--CAA-----TAAC---------------------------------------------------------------------------------------------------------------------AACAG---------TAGCAGCAATCGAAATAGTACTAGGA--GAAACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................AGCAACA----------AATGCAACAAC---------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331000010
........................................................................................................................................................GCAACT---------------------------------A---------------------------CAGCAG---------------------------------------------------------------CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................A--------ACAACAGTAGCAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................2580.131000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................22200.102000020
CAG----CAAC------AGCA----GCAGCA-----AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................A--------ACAACAGTAGCAGCAGCA.............................................................................................................................................................................................................................................................................................19200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAGC-----AG-CA........................................................................................................................................................................................20200.051100000
droGri2
AAA----CCCG------AAAGTGAAGATGAA-----ATA---------------------AAATAAAGCAGCAGCTGAA----------TGGGAATTCACACAGATAGCAC----------------------------------------AGGAG-----------------------------------------------------------GCAGCAACAG---CAGCAGCAGCAGCA---------GCAGCAGCAACAGCA------GCAACAGCAACAGCAGCAGCAGCA------------ACAGCAGCAACAGCAGCA------------------------GCAGC---AGCTGCGGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCG------ACTA--GGG------AGCAACGAAATCAAAA--------------------------------------------------------------------------AAAAAAAAAAAGA---------AAAA---------GAGAAAAGAAAAAAAAAGC-CGAATG--AAACGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AAG----CGAG------AGAA----GCTGAG-----GAACCTCACCG--------AGGCCAACA---------------GCACCAC-----------------------------------------------------------T------GCGA-----------------------------------------------------------ACAGCAGCA------ACTCCACC------------------------------------------------------------ACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGC----------------CACC------ACCAATGATGT-----------------------------------------------------------GACTTCAGAGAAACTCTCCAAAGAAG---------AGCGCCACCGG---------CTGAAGAAGTCGAAGAAGT-CCAAGA--GCCTGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................TGAG-----GAACCTCACCG--------AGGCCAACA---------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................AGCA------ACTCCACC------------------------------------------------------------ACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGC----------------CACC------AC..............................................................................................................................................................2911.001010000
.......................................................................................................................................................................................................................................CTCCACC------------------------------------------------------------ACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGC----------------..........................................................................................................................................................................1811.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGT-----------------------------------------------------------GACTTCAGAGAAACTCTCC.......................................................................2411.001010000
AAG----CGAG------AGAA----GCTGAG-----GAACCTCACCG--------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................GAA----GCTGAG-----GAACCTCACCG--------AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
AAG----CGCG------AGAA----GCTGAG-----GAATCTCACCG--------AGGCCAACAGTGCCACCA---CAGCG--------------------------------------------------------------------------A-----------------------------------------------------------TTGGCGGCA------ACTCCACC------------------------------------------------------------GCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGC----------------CACA------CCCAACGATGT-----------------------------------------------------------GACATCCGAGAAGCTCTCCAAGGAGG---------AGCGCCACCGG---------CTGAAGAAGTCGAAGAAGT-CCAAGA--GCCTGGASizeHit CountTotal NormTotal
No Reads
droKik1
AAG----CGCG------AGAA----GCTGAG-----GAACCTCACAG--------AGACCAACG---------------CAACCGT-----------------------------------------------------------TGGAAGCGTGACC---------------------------------A---------------------------CAGTA-----AACACAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCT-----------------CCAAT--GGTTACAAATGA----GGTGATTAGC----------------------------------------------------TCTGAGAAACTTTCCAAGGAGG---------AGCGTCATAGA---------CTGAAAAAGTCCAAGAAAT-CCAAGA--GTTTGGASizeHit CountTotal NormTotal
No Reads
droFic1
AGG----TGA-------AGAA----GCTGCA-----GGAGGA-------GGACGGTG-------------CCA---CGCCCACCACTGCCGTC------------------------------------------------------GGTTCGCCGAC---------------------------------G---------------------------CAGCAGTTGCAGCAACACC---AG--GCG--------G------CCGTCGCTGCCGA-------GGCAGCCGCAGCAG------------CAGCAGCAGCAGCAGCG------------------------GCAGCAGCAGC------GGCTGAGCA-------TTCGCACGCGCACGT-----------------------------------------------------------------------------------CGTCCACGGCCACAATCCGCAGCAGCAGCAACAGCAGCAGCAGG-----GG-CAACAT--CCG-----CAGC---------------------------------------------------------------------------------------------------------------------------------------------CG---------GGGCA--GCAGGGGSizeHit CountTotal NormTotal
No Reads
droEle1
AAA----TGCTTCGGCC----------C-AG-----C-------------AGCAACA-------------CCT---CAGCCACCAGCAACA------GCAG----------CAGCAGCAG------------------------------------------------------------------------------------------------CAGCACCAG---CAGC------------------------A------G-----CAACAAC-------TGCAGCAACAGCAG------------CAGCAGCAACAGCAGCAGCAGCAGCATGCCCAGCAGCATGCCCAGC---AAC----------------------------------------TGCAACATG-----CCCAACAGCAGCTGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCACGC-----------------------------------------------------------------CCAG----------------CAGC------AGCAACATGTC---------------------CAGCAGCAACACGCCCTCCA--------------------------------------C-CAGC---------AACACCAACAG---------CTGCATCACGATCCGCAGC-AGCAGC--ACCCGCASizeHit CountTotal NormTotal
No Reads
droRho1
TCC----CACG------GCAG----TTTGGGACCCACCAT-CG----TCCAGACGCA-------------CCA---TCTCCACCAGCAACT------CACCCA-------------------------------------------GCCACTGACGCTGCGCAAGAGCAGCCCGCCCACAGAGCACCTGCTCAGCCAGTCCATGCAGCACCTCACCCAGCAGCAG---CAGCTCCACCTGCA---------------------CCA---------------------CCTGCTCGG------------CCAGCAGCAGCAGCAACA------------------------GCAGC---AGCAACAGGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCAT--CCG-----CAGCAGCAGCAG------CACTCGCCCCACTCTTTGGTGCGGGTGAAGAAGGAGCCGAACGTGGGCCAGCGGCA------------------CCTGTCGC---------------------------------------CG-----CACCACCC-GCAACA--GTCGCCGSizeHit CountTotal NormTotal
No Reads
droBia1
GAC----TACG------ACGAG---GACGAG-----GAGGAGGA-----CGAGGAGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCACCAG---CAGCAGCAGCAGCA---------GC---A------GCATCAGCAGGGC-------AAC-----------GGGCAGTG------------------------------------------------------------------------------ACCTCACGCCCACGGACCTGCGACATGTGCTGCC----------------------------------------------------------------CAGCAGCAACCACGATCAGCAGCAGCAGCAACATCAGCAGCAGC-----AG-CAGCAG--CAG-----CAGCAACA---------------GGAGCCCGC--------TGC----------------CTA------------CGATGACGAGGACGAG---------GAGGAGGACGAGGACGA------CG-----------AGGATGAGGACGAGGTGGC-CAGCAGCCACCTGGASizeHit CountTotal NormTotal
No Reads
droTak1
GACGAGG---------T-GG-------GGAG--TAGCCACCTG----GACAGCCGTG-------------CCACCCTGT----------CGTCCGCCCACCTAAACAGCGC----------------------------------------TGCGG-----------------------------------------------------------CCGCCGAGAG---CAGCGGTCTC------------------------------CACATGGC-------GGCGGCGGCGGCG------------GCAGCAGCGGCAGCAGCA------------------------GCGGC---GGCGGCAGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCC------TCGGCCGCC------A------AGCTGGGTGCCCAGC--------TGGAGCA---------------------------------------------GCA---------------------------GCAGCAGAATGCCGCCAGCAATCCGAATAA----CAATG--CCTTGGASizeHit CountTotal NormTotal
No Reads
droEug1
ACA-G--TGTG------GGCA----GACA--------------------------------------------------GAATTGCAACTG------------------------------------------------------------TAATT-----------------------------------------------------------GCAATATCTG---CAACAATATCAACT-----G--C-----A------GCAGCAGCAATTC-------CCC-----------TTGCAACACCAACAGCAGCAGCAACAGCA------------------------GCAGA---GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----AG-CAACACCCCTG-----CAGCAATATTCGGAATGG----AGCGAT------------------TGCTGCACGCAGTTCG------------------------CGAGGAGTTTCAAACGGAGG---------ACGAGTACG-----------AGGAGGAAG----ATGAGG-CGAAAA--CATTGCASizeHit CountTotal NormTotal
No Reads
dm3
GACCCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAACAG---CAGCACCACCAACAC--ACG--C-----A------CCACCACAATTAC-------GCCGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAATAGCAG------TGCCAACAACATGC--------TGCAGCA---------------------------------------------GCTGTCGCAGC-AG---------AACGTCACAGT---------G----ACGGCGCACCACAG-CCAGCA--GCAGCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--------TGCAGCA---------------------------------------------GCTGTCGC......................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
..................................................................................................................................................................................................................................................................................................................................................................C---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAG.......................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGC--------TGCAGCA---------------------------------------------GCTGTCGC......................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGC--------TGCAGCA---------------------------------------------GCTGTCGC......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAATAGCAG------TGCCA...................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAGC-AG---------AACGTCACAGT---------G----AC............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------------------------------------GCTGTCGCAGC-AG---------AACGTCAC...............................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-AG---------AACGTCACAGT---------G----A.............................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
..............................................................................................................................................................................................................................................................................AATTAC-------GCCGGCAGCAGCGG------------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC-AG---------AACGTCACAGT---------...................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
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droSim2
GACCCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAACAG---CAGCACCACCAACAC--ACG--C-----A------CCACCACAACTAC-------GCTGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAATAGCAG------TGCCAACAACATGC--------TGCAGCA---------------------------------------------GCTGTCGCAG--------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................CCACAACTAC-------GCTGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.................................................CGGTAGCG-------------CCA---TATCCATCGCCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................GCAGCA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................2611.00100000000000100000
..CCCAC---------T--------------------------------CGGTAGCG-------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000100000000
................................................................................CATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.......................................................................CA---TATCCATCGCCGACG------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA------------------------GCAGC---AGC------AGTCC----AG.....................................................................................................................................................................................................................................................................................................................................................2811.00100000100000000000
............................................................................TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
droSec2
GACCCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAGC------AGCACCACCAACAC--ACG--C-----A------CCACCACAACTAC-------GCTGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAATAGCAG------TGCCAACAACATGC--------TGCAGCA---------------------------------------------GCTGTCGCAG--------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................TAGCG-------------CCA---TATCCATCGCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
............................................................................................................................................................................................................................AGC------AGCACCACCAACAC--ACG--C-----A------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
GACCCAC---------T--------------------------------CGGTAGCG-------------CCA---TA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............................................................................TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................................................................................................................................................................................................................................................................................................................GCA------------------------GCAGC---AGC------AGTCC----AGT....................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................................................................................................................................................................................................................................................................................................................................CA------------------------GCAGC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----..........................................................................................................................................................................2411.0010100
...................................................................................CGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................................................................GC---AGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGC......................................................................................................................................................................2311.0010010
..............................................................................................................................................................................................................................................................................................GGCAGCAGCGG------------CAGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...........................................................................................................................................................................................................................................................................CACAACTAC-------GCTGGCAGCAGCGG------------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
......................................................................................CGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAGC------AGCACCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.......................................................................CA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGC--------TGCAGCA---------------------------------------------GCTGTCGC......................................................................2211.0010100
droYak3
CAT----CA----------------------------------------------------------------------------G-----------------------------------------------------------TCGGCCAGCCGCA---------------------------------A---------------------------CAGCAA---CAGCAACAGC---A-ACAGC--AGCAGCA------GCAACAGCAGCAACAGC---AACAGCAGCAGCA------------ACAGCAGCAACAGCAGCA------------------------GCAGC---AACAGCAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCA------ACTGCC------------AGCGATGG-----------------------------------------------------------ACTTGGGGACTAATTGT---GGGCAG---------AAAGCAAAAAA---------CAGCTGCGATCGAGG------GAAAA--GGAGAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................GCAGC---AACAGCAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG.......................................................................................................................................................................................1940.25101000000000
...............................................................................................................................................................................................................................................................................AGCAACAGC---AACAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000000000
..................................................................................................................................................................................................................................................................................AACAGC---AACAGCAGCAGCA------------ACAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................25190.05101000000000
..............................................................................................................................................................................................................................................................................................................................CAGCAGCA------------------------GCAGC---AACAGC...................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
...............................................................................................................................................................................................A---------------------------CAGCAA---CAGCAACAGC---A-AC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
...................................................................................................................................................................................................................................................ACAGC--AGCAGCA------GCAACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
...........................................................................................................................................................................................................................................................................................................................CAACAGCAGCA------------------------GCAGC---AACA.....................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
......................................................................................................................................................................................................................................GCAACAGC---A-ACAGC--AGCAGCA------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
....................................................................................................................................................................................................................................................CAGC--AGCAGCA------GCAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
droEre2
GAACCAC---------T--------------------------------CGGTAGCG-------------CCA---TATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAGCAG---CAGCACCACCAACAC--ACG--C-----A------CCACCACAACTAC-------GCCGGCAGCAGCGG------------CAGCAGCAACAGCAGCA------------------------GCAGCAGCAGC------AGTCC----AGTGATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----CAGCAACAACAG------TGCCAACAATATGC--------TGCAGCA---------------------------------------------GCTGTCGCAGC-AA---------------------------------------------------AATG--TCACAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................CATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCAGCAG---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000003
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------GCTGTCGCAGC-AA---------------------------------------------------AATG--TCACA..2311.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------------------------------------GCTGTCGCAGC-AA---------------------------------------------------AATG--TC.....2511.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGC--------TGCAGCA---------------------------------------------GCTGTCGCAGC-A.................................................................2611.0010000010
.............................................................................ATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.............................................................................ATCCATCGCCGACG------------------------------------------------------------TACGT-----------------------------------------------------------CCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGC--------TGCAGCA---------------------------------------------GCTGTCGC......................................................................2111.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACAATATGC--------TGCAGCA---------------------------------------------..............................................................................2011.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------TGCAGCA---------------------------------------------GCTGTCGCA.....................................................................1811.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATGC--------TGCAGCA---------------------------------------------GCTGTCGC......................................................................2411.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------GCTGTCGCAGC-AA---------------------------------------------------AATG--TCAC...2211.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACAATATGC--------TGCAGCA---------------------------------------------GCTGTC........................................................................2611.0010100000
................................................................................................................................................................................................................................................................................................CAGCAGCGG------------CAGCAGCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000010
................................................................................................................................................................................................................................................................................................................................GCAGCA------------------------GCAGCAGCAGC------AGTCC----.......................................................................................................................................................................................................................................................................................................................................................2230.3310000010
...............................................................................................................................................................................................................................................................................................................................AGCAGCA------------------------GCAGCAGCAGC------AGTC............................................................................................................................................................................................................................................................................................................................................................22120.0810000010
.................................................................................................................................................................................................................................................................................................AGCAGCGG------------CAGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................19180.0610000010

Generated: 06/08/2015 at 04:36 PM