dpe_172

TCGGATTGATGAGATCGAGAAAATATTTATGTCGTCCATCAGCCTCTAATTTTCGAGATCAATGCTGAGCACACTTTCGGGGTCTTCGTTCAAACAATCGATTGCCTTCAAGTATTTCTTACCATTGTCTGAAGTGATGGTGTATATTTGCCGCTTTGAAATGGAAAACTCTGTTTTCGATTTCCAT *********************************((((((.........((((.(((.(((((.((((...((((..(((((..(((..........)))..))))).))))....)))).)))))))))))))))))).........************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo
..................................................TTTCGAGATCAATGCTGAGCACACT................................................................................................................	25	0	2	17.50	35	13	22	0
..................................................TTTCGAGATCAATGCTGAGCACACTT...............................................................................................................	26	0	2	15.00	30	15	15	0
...........................................................................................................TCAAGTATTTCTTACCATTGTCTGAAG.....................................................	27	0	1	6.00	6	6	0	0
..................................................TTTCGAGATCAATGCTGAGCACAC.................................................................................................................	24	0	2	3.00	6	1	5	0
...........................................................................................................TCAAGTATTTCTTACCATTGTCT.........................................................	23	0	1	3.00	3	3	0	0
...................................................TTCGAGATCAATGCTGAGCACACTT...............................................................................................................	25	0	2	2.50	5	5	0	0
.........................................................................................TCAAACAATCGATTGCCTTCAAGTATT.......................................................................	27	0	1	2.00	2	2	0	0
..................................................................................TCTTCGTTCAAACAATCGATTGCCT................................................................................	25	0	3	1.67	5	5	0	0
....................................................................GCACACTTTCGGGGTCTTCGTTC................................................................................................	23	0	3	1.33	4	4	0	0
............................................................................................................................TTGTCTGAAGTGATGGTGTATATT.......................................	24	0	1	1.00	1	1	0	0
....................................................................................................................TCTTACCAGTGTCTGAAGTGATGG...............................................	24	1	1	1.00	1	1	0	0
..................................................TTTCGAGAGCAATGCTGAGCACACTT...............................................................................................................	26	1	2	1.00	2	2	0	0
........................................................................................TTCAAACAATCGATTGCCTTCAAGTAT........................................................................	27	0	1	1.00	1	1	0	0
................................................................................................................TATTTCTTACCATTGTCTGAAG.....................................................	22	0	1	1.00	1	1	0	0
..................................................TTTCGAGATCAATGCTGAGCACA..................................................................................................................	23	0	2	1.00	2	1	1	0
.........................................................................................TCAAACAATCGATTGCCTTCAAGTA.........................................................................	25	0	1	1.00	1	1	0	0
...........................TATGTCGTCCATCAGCCTCT............................................................................................................................................	20	0	1	1.00	1	1	0	0
......TGATGAGATCGAGAAAATATTTATGT...........................................................................................................................................................	26	0	1	1.00	1	1	0	0
..........................................................TCAATGCTGAGCACACTTTCGG...........................................................................................................	22	0	1	1.00	1	1	0	0
..............................................TAATTTTCGAGATCAATGCTGAGCACACT................................................................................................................	29	0	1	1.00	1	0	1	0
..................................................TTTCGAGATCAATGCTGAGCACACC................................................................................................................	25	1	2	1.00	2	0	2	0
...........................................................................................AAACAATCGATTGCCTTCAAGT..........................................................................	22	0	1	1.00	1	1	0	0
...........................................................................................AAACAATCGATTGCCTTCAAGTATT.......................................................................	25	0	1	1.00	1	1	0	0
..............TCGAGAAAATATTTATGTCGTCC......................................................................................................................................................	23	0	1	1.00	1	1	0	0
........................................................................................TTCAAACAATCGATTGCCTTCAAGT..........................................................................	25	0	1	1.00	1	1	0	0
..............TCGAGAAAATATTTATGTCGTCCATCA..................................................................................................................................................	27	0	1	1.00	1	1	0	0
................TCGAGAATATTTATGTCGTCCATC...................................................................................................................................................	24	3	1	1.00	1	1	0	0
..................................................TTTCGAGATCAATGCTGAGCACACTTTC.............................................................................................................	28	0	1	1.00	1	1	0	0
...................................................................................................................TTCTTACCATTGTCTGAAGTGATG................................................	24	0	1	1.00	1	1	0	0
.....................................................................................TCGTTCAAACAATCGATTGCCTTCAAG...........................................................................	27	0	3	0.67	2	2	0	0
............................................................................TCGGGGTCTTCGTTCAAACAATC........................................................................................	23	0	2	0.50	1	1	0	0
...................................................TTCGAGATCAATGCTGAGCACACC................................................................................................................	24	1	2	0.50	1	0	1	0
..................................................TTTCGAGAACAATGCTGAGCACACTT...............................................................................................................	26	1	2	0.50	1	1	0	0
...................................................TTCGAGATCAATGCTGAGCACACT................................................................................................................	24	0	2	0.50	1	1	0	0
......................................................................................................................................TGATGGTGTATATTTGCCGCTTTGAAA..........................	27	0	2	0.50	1	1	0	0
..................................................TTTCGAGATCAATGCTGAGCACACG................................................................................................................	25	1	2	0.50	1	0	1	0
.................................................................................................................................TGAAGTGATGGTGTATATTTGCCG..................................	24	0	2	0.50	1	1	0	0
.................................................................................................................................TGAAGTGATGGTGTATATTTGCCGCTT...............................	27	0	2	0.50	1	1	0	0
..................................................TTTCGAGATCAATGCTGAGC.....................................................................................................................	20	0	2	0.50	1	1	0	0
...................................................TTCGAGATCAATGCTGAGCACAC.................................................................................................................	23	0	2	0.50	1	1	0	0
...................................................TTCGAGATCAATGCTGAGCAC...................................................................................................................	21	0	2	0.50	1	1	0	0
.............................................................................CGGGGTCTTCGTTCAAACAATCGAT.....................................................................................	25	0	2	0.50	1	1	0	0
................................................................................................................................................TATTTGCCGCTTTGAAATGGAAAACTC................	27	0	2	0.50	1	1	0	0
....................................................................................................................................................TGCCGCTTTGAAATGGAAAACTCTG..............	25	0	2	0.50	1	1	0	0
..................................................................................TCTTCGTTCAAACAATCGATTGCCTT...............................................................................	26	0	3	0.33	1	1	0	0
......................................................................................CGTTCAAACAATCGATTGCCTTCAA............................................................................	25	0	3	0.33	1	1	0	0
...................................................................................CTTCGTTCAAACAATCGATTG...................................................................................	21	0	3	0.33	1	1	0	0
......................................................................................CGTTCAAACAATCGATTGCC.................................................................................	20	0	3	0.33	1	1	0	0
.......................................................................................GTTCAAACAATCGATTGCCTTCAA............................................................................	24	0	3	0.33	1	1	0	0
.....................................................................................TCGTTCAAACAATCGATTGCCTTCAA............................................................................	26	0	3	0.33	1	1	0	0
....................................................................................TTCGTTCAAACAATCGATTGCCT................................................................................	23	0	3	0.33	1	1	0	0
....................................................................GCACACTTTCGGGGTCTTCGTTCAAAC............................................................................................	27	0	3	0.33	1	1	0	0
....................................................................GCACACTTTCGGGGTCTTCGTTCAAA.............................................................................................	26	0	3	0.33	1	1	0	0
..................................................................................TCTTCGTTCAAACAATCGATTGCC.................................................................................	24	0	3	0.33	1	1	0	0
.........................................................................................TCAAACAATCGATTGCCTTCAAG...........................................................................	23	0	3	0.33	1	1	0	0
..................................................................................TCTTCGTTTAAACAATCGATTGCCT................................................................................	25	1	3	0.33	1	1	0	0
..................................................................................TCTTCGTTCAAACAATCGATTGCCTTC..............................................................................	27	0	3	0.33	1	1	0	0
......................................................................ACACTTTCGGGGTCTTCGTT.................................................................................................	20	0	3	0.33	1	0	0	1
....................................................................................TTCTTTCAAACAATCGATTGCC.................................................................................	22	1	3	0.33	1	1	0	0
..................................................TTTCGAGATCAATCCTGAGCACACT................................................................................................................	25	1	3	0.33	1	1	0	0

AGCCTAACTACTCTAGCTCTTTTATAAATACAGCAGGTAGTCGGAGATTAAAAGCTCTAGTTACGACTCGTGTGAAAGCCCCAGAAGCAAGTTTGTTAGCTAACGGAAGTTCATAAAGAATGGTAACAGACTTCACTACCACATATAAACGGCGAAACTTTACCTTTTGAGACAAAAGCTAAAGGTA ************************************((((((.........((((.(((.(((((.((((...((((..(((((..(((..........)))..))))).))))....)))).)))))))))))))))))).........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V111 male body
.......................................................................GTGAAAGCCCCAGAAGCAAGTTTGT...........................................................................................	25	0	2	3.50	7	5	2	0
...................................................................TCGTGTGAAAGCCCCAGAAGCAAGT...............................................................................................	25	0	3	2.33	7	4	3	0
..........................................................................AAAGCCCCAGAAGCAAGTTTGTTA.........................................................................................	24	0	2	1.50	3	2	1	0
............................................................................AGCCCCAGAAGCAAGTTTGTTAG........................................................................................	23	0	2	1.50	3	1	0	2
AGCCTAACTACTCTAGCTCTTTTATAAAT..............................................................................................................................................................	29	0	1	1.00	1	1	0	0
...CTAACTACTCTAGCTCTTTTATAAAT..............................................................................................................................................................	26	0	1	1.00	1	1	0	0
...................................GGTAGTCGGAGATTAAAAGCTCTAG...............................................................................................................................	25	0	1	1.00	1	1	0	0
....................................................................CGTGTGAAAGCCCCAGAAGCAAGTTT.............................................................................................	26	0	3	1.00	3	0	3	0
..................................AGGTAGTCGGAGATTAAAAGCTCTAG...............................................................................................................................	26	0	1	1.00	1	1	0	0
..................................AGGTAGTCGGAGATTAAAAGCTCTAGT..............................................................................................................................	27	0	1	1.00	1	1	0	0
.........................................................................GAAAGCCCCAGAAGCAAGTTTGT...........................................................................................	23	0	2	1.00	2	2	0	0
..........................................................................AAAGCCCCAGAAGCAAGTTTGT...........................................................................................	22	0	2	1.00	2	0	2	0
..........................................................................AAAGCCCCAGAAGCAAGTTTGTTAGCT......................................................................................	27	0	2	1.00	2	0	2	0
.............................................................................................TGTTAGCTAACGGAAGTTCATAAA......................................................................	24	0	1	1.00	1	1	0	0
..............................................................................................GTTAGCTAACGGAAGTTCATAAA......................................................................	23	0	1	1.00	1	0	0	1
.....................................................................................................................................................CGGCGAAACTTTACCTTTTGAGACAA............	26	0	1	1.00	1	1	0	0
........................................................................TGAAAGCCCCAGAAGCAAGT...............................................................................................	20	0	3	1.00	3	1	2	0
..........................................................................AAAGCCCCAGAAGCAAGTTTG............................................................................................	21	0	3	0.67	2	0	2	0
.......................................................................GTGAAAGCCCCAGAAGCAAGTTTG............................................................................................	24	0	3	0.67	2	2	0	0
.................................................................................CAGAAGCAAGTTTGTTAGC.......................................................................................	19	0	3	0.67	2	0	2	0
...................................................................TCGTGTGAAAGCCCCAGAAGCAAGTTT.............................................................................................	27	0	3	0.67	2	2	0	0
....................................................................CGTGTGAAAGCCCCAGAAGCAAGT...............................................................................................	24	0	3	0.67	2	2	0	0
...................................................................TCGTGTGAAAGCCCCAGAAGCAAG................................................................................................	24	0	3	0.67	2	2	0	0
.......................................................................GTGAAAGCCCCAGAAGGAAGTTTGT...........................................................................................	25	1	2	0.50	1	1	0	0
............................................................................AGCCCCAGAAGCAAGTTTGTTA.........................................................................................	22	0	2	0.50	1	1	0	0
.......................................................................GTGAAAGCCCCAGAAGCAAGTTTGTT..........................................................................................	26	0	2	0.50	1	1	0	0
............................................................................AGCCCCAGAAGCAAGTTTGTT..........................................................................................	21	0	2	0.50	1	1	0	0
.........................................................................AAAAGCCCCAGAAGCAAGTTTGT...........................................................................................	23	1	2	0.50	1	0	1	0
..............................................................................CCCCAGAAGCAAGTTTGTTAGC.......................................................................................	22	0	2	0.50	1	1	0	0
.........................................................................GAAAGCCCCAGAAGCAAGTTTGTTAG........................................................................................	26	0	2	0.50	1	0	0	1
........................................................................TGAAAGCCCCAGAAGCAAGTTTGT...........................................................................................	24	0	2	0.50	1	1	0	0
...............................................................................CCCAGAAGCAAGTTTGTTAGCTAACGGA................................................................................	28	0	2	0.50	1	1	0	0
...............................................................................CCCAGAAGCAAGTTTGTTAG........................................................................................	20	0	2	0.50	1	1	0	0
.........................................................................GAAAGCCCCAGAAGCAAGTTTGTT..........................................................................................	24	0	2	0.50	1	1	0	0
...............................................................................CCCAGAAGCAAGTTTGTTAGCTAA....................................................................................	24	0	2	0.50	1	1	0	0
....................................................................CGTGTGAAAGCCCCAGAAGCAAGTTTGT...........................................................................................	28	0	2	0.50	1	1	0	0
............................................................................ATCCCCAGAAGCAAGTTTGTTAG........................................................................................	23	1	2	0.50	1	1	0	0
.........................................................................GAAAGCCCCAGAAGCAAGTTTGTTA.........................................................................................	25	0	2	0.50	1	1	0	0
...................................................................TCGTGTGAAAGCCCCAGAAGCAAGTT..............................................................................................	26	0	3	0.33	1	1	0	0
.........................................................................GAAAGCCCCAGAAGCAAGTT..............................................................................................	20	0	3	0.33	1	1	0	0
.........................................................................GAAAGCCCCAGAAGCAAGTTT.............................................................................................	21	0	3	0.33	1	1	0	0
.....................................................................GTGTGAAAGCCCCAGAAGCAAGT...............................................................................................	23	0	3	0.33	1	0	1	0
......................................................................TGTGAAAGCCCCAGAAGCAAGTTTG............................................................................................	25	0	3	0.33	1	1	0	0
........................................................................TGAAAGCCCCAGAAGCAAGTTTT............................................................................................	23	1	3	0.33	1	1	0	0
...................................................................TCGTTTGAAAGCCCCAGAAGCAAGT...............................................................................................	25	1	3	0.33	1	0	1	0
....................................................................CGTGTGAAAGCCCCAGAAGCAAGTTTG............................................................................................	27	0	3	0.33	1	1	0	0
..........................................................................AAAGCCCAAGAAGCAAGT...............................................................................................	18	1	5	0.20	1	0	1	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_11:776005-776191 +	dpe_172	TCGGATTGATGAGATCGAGAAAATATTTATGTCGTCCATCAGCCTCTAATTTTCGAGATCAATGCTGAGC------ACACTTTCGGGGTCTTC------------------GTTCAAACAATCGATTGCCTTCAAGTATTTCTTACCATTGTCTGAAGTGATGGTGTATATTTGCCGCTTTGAAATGGAAAACTCTG--------TTTTCGATTTCCAT
dp5	Unknown_singleton_3993:1909-2035 +		TCGGATGGATGAAATCGAAAAAATATTTATGTCGTCCATCAGCTCCTCATTTTCGAGATCAATGCTGAGC------ACACTTCCGAGGTCTTC------------------GTTCAAACAATCGATTGCCTTTAAGACATTCTTACCATTG--------------------------------------------------------------------
droWil2	scf2_1100000004954:2060632-2060832 +		TTTGATCGAACGTATTGAATAAATTTTCAGATCTTTTAGCAGTCCATCATCATCCAAGTCCTCAGCAACTTCTTCTTCATCTTCGGAATCATT------------------GTTCAGTAATTCCACTGCCTTTATCATATTTCGACCATTGTCGGTTGTGATGGTATAGACTTGCTTTCTGGATATGCTAAAATCAGTCAATATAGACTTGATCTCAGC
droMoj3	scaffold_6482:1880690-1880884 +		TCGAATTGTTGAGATCGAAAAAACATTTATGCTGTCCATCAGCTGCTCATTTTCGATATCAGCACTGAGC------ACATTTTCGAGGTCTTC------------------GTTCAAGCAATCAATTGCCTTTACGACATTTCTGCCATTGTCTGAAGTGATTGTATATAATTGCTGCTTTGAAATCGAAAACTCTGCCAAAATATTTTCAATTTCTAT
droBip1	scf7180000393425:3343-3537 -		TCGTATAGAAGCGGTGGAAAAAATTCTTACTTCTTGCACTAGCTCCTCATTTTCATCCTCGGAGCTTAGC------GCACTTTCGGGGTCTTC------------------AATTAAATGCTCTATTGCCTTAAAAATATTTTTGCCATTGTCGGACGTGATGGTATAGATTTGCTGCTTAGAAATTAAAAAATCTGCCAAAATATTTAAAATTTCACT
droKik1	scf7180000301632:2726-2920 -		TCGTATAGAAGCGATGGAAAAAATTCTTACTTCTTGCACCAGCTCCTTATTTTCATCCTCGAAGCTTAGA------ACACTTTCGGGGTCTTC------------------ATTTAAGTGCTCTATTGCCTTCAAAATATTTTTGCCATTGTCGGACGTAATGGTATAGATTTGCTGCTTAGAAATTGAAAAATCTGCCAAAATATTTTCAATTTCACT
droFic1	scf7180000453782:840755-840949 +		TCGTATAGAAGCGATGGAAAAAATTCTTACTTCTTGCACTAGCTCCTCATTTTCATCCTCGAAGCTTAGC------GCACTTTCGGGGTCTTC------------------ATTTAAATGCTCTATTGCCTTCAAAATATTTTTGCCATTGTCGGACGTGATGGTATAGATTTGCTGCTTAGAAATTGAAAAATCTGCCAAAATATTTTCAATTTCACT
droEle1	scf7180000490640:260004-260214 +		ATTCACTGACTTTATAGAGTGAATTTGGATATTGGTCAGAAGTCCTTCTTTATCGGGATCCTCACCAGAA------ACTTCCTCGTTGTCTGCATCCTCATCATCGCAGCTGTTTAAAAGTTCCACTGG-TTTACCATGTTCCTTTCGTTGTCCGTCGTAATGGTGTAAATTTGGTCTTTTGAAATTAAAAATTCTATCTATATAGACTTATTTTCAG-
droTak1	scf7180000415706:596-790 -		TCTGATCGAAATTATCGAGTGAACCATCACATCGTTTAAAACCTCGTCTTCGTCAAAGTCATCATTGGGG------GCATTATCAGCATCCTT------------------GCTCAAATATTCCACGGATTTTATTACATTCTTTCCATTATCTGATGTGACGGTGTATATTTGATCAATGGAAACTGAAAACTCATCCAAAATATTTTCGATTTCAGC
droEug1	scf7180000409560:271-465 -		TCGTATAGAAGAGATGGAAAAAATTCTTACTTCTTGCACTAGCTCCTCATTTTCATCCTCGGAGCTTAGC------GCACTTTCGGGGTCTTC------------------ATTTAAATGCTCTATTGCCTTCAAAATATTTTTGCCATTGTCGGACGTGATGGTATAAATTTGCTGCTTAGAAATTGAAAAATCTGCCAAAATATTTTCAATTTCACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TCGGATTGATGAGATCGAGAAAATATTTATGTCGTCCATCAGCCTCTAATTTTCGAGATCAATGCTGAGC------ACACTTTCGGGGTCTTC------------------GTTCAAACAATCGATTGCCTTCAAGTATTTCTTACCATTGTCTGAAGTGATGGTGTATATTTGCCGCTTTGAAATGGAAAACTCTG--------TTTTCGATTTCCAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................TTTCGAGATCAATGCTGAGC------ACACT..........................................................................................................................................	25	2	17.50	35	22	13	0	0	0	0
..................................................TTTCGAGATCAATGCTGAGC------ACACTT.........................................................................................................................................	26	2	15.00	30	15	15	0	0	0	0
...................................................................................................................................TCAAGTATTTCTTACCATTGTCTGAAG.............................................................	27	1	6.00	6	0	6	0	0	0	0
..................................................TTTCGAGATCAATGCTGAGC------ACAC...........................................................................................................................................	24	2	3.00	6	5	1	0	0	0	0
...................................................................................................................................TCAAGTATTTCTTACCATTGTCT.................................................................	23	1	3.00	3	0	3	0	0	0	0
...................................................TTCGAGATCAATGCTGAGC------ACACTT.........................................................................................................................................	25	2	2.50	5	0	5	0	0	0	0
.................................................................................................................TCAAACAATCGATTGCCTTCAAGTATT...............................................................................	27	1	2.00	2	0	2	0	0	0	0
........................................................................................TCTTC------------------GTTCAAACAATCGATTGCCT........................................................................................	25	3	1.67	5	0	5	0	0	0	0
....................................................................GC------ACACTTTCGGGGTCTTC------------------GTTC........................................................................................................	23	3	1.33	4	0	4	0	0	0	0
....................................................................................................................................................TTGTCTGAAGTGATGGTGTATATT...............................................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................TTCAAACAATCGATTGCCTTCAAGTAT................................................................................	27	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................TATTTCTTACCATTGTCTGAAG.............................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................TTTCGAGATCAATGCTGAGC------ACA............................................................................................................................................	23	2	1.00	2	1	1	0	0	0	0
.................................................................................................................TCAAACAATCGATTGCCTTCAAGTA.................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................TATGTCGTCCATCAGCCTCT............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......TGATGAGATCGAGAAAATATTTATGT...........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................TCAATGCTGAGC------ACACTTTCGG.....................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..............................................TAATTTTCGAGATCAATGCTGAGC------ACACT..........................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................TTTCGAGATCAATGCTGAGC------ACACC..........................................................................................................................................	25	2	1.00	2	2	0	0	0	0	0
...................................................................................................................AAACAATCGATTGCCTTCAAGT..................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................AAACAATCGATTGCCTTCAAGTATT...............................................................................	25	1	1.00	1	0	1	0	0	0	0
..............TCGAGAAAATATTTATGTCGTCC......................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................TTCAAACAATCGATTGCCTTCAAGT..................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............TCGAGAAAATATTTATGTCGTCCATCA..................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................TTTCGAGATCAATGCTGAGC------ACACTTTC.......................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................TTCTTACCATTGTCTGAAGTGATG........................................................	24	1	1.00	1	0	1	0	0	0	0
...........................................................................................TC------------------GTTCAAACAATCGATTGCCTTCAAG...................................................................................	27	3	0.67	2	0	2	0	0	0	0
..................................................................................TCGGGGTCTTC------------------GTTCAAACAATC................................................................................................	23	2	0.50	1	0	1	0	0	0	0
...................................................TTCGAGATCAATGCTGAGC------ACACC..........................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
...................................................TTCGAGATCAATGCTGAGC------ACACT..........................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................TGATGGTGTATATTTGCCGCTTTGAAA..................................	27	2	0.50	1	0	1	0	0	0	0
..................................................TTTCGAGATCAATGCTGAGC------ACACG..........................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................TGAAGTGATGGTGTATATTTGCCG..........................................	24	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................TGAAGTGATGGTGTATATTTGCCGCTT.......................................	27	2	0.50	1	0	1	0	0	0	0
..................................................TTTCGAGATCAATGCTGAGC------...............................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
...................................................TTCGAGATCAATGCTGAGC------ACAC...........................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
...................................................TTCGAGATCAATGCTGAGC------AC.............................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...................................................................................CGGGGTCTTC------------------GTTCAAACAATCGAT.............................................................................................	25	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................TATTTGCCGCTTTGAAATGGAAAACTC........................	27	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................TGCCGCTTTGAAATGGAAAACTCTG--------..............	25	2	0.50	1	0	1	0	0	0	0
........................................................................................TCTTC------------------GTTCAAACAATCGATTGCCTT.......................................................................................	26	3	0.33	1	0	1	0	0	0	0
............................................................................................C------------------GTTCAAACAATCGATTGCCTTCAA....................................................................................	25	3	0.33	1	0	1	0	0	0	0
.........................................................................................CTTC------------------GTTCAAACAATCGATTG...........................................................................................	21	3	0.33	1	0	1	0	0	0	0
............................................................................................C------------------GTTCAAACAATCGATTGCC.........................................................................................	20	3	0.33	1	0	1	0	0	0	0
...............................................................................................................GTTCAAACAATCGATTGCCTTCAA....................................................................................	24	3	0.33	1	0	1	0	0	0	0
...........................................................................................TC------------------GTTCAAACAATCGATTGCCTTCAA....................................................................................	26	3	0.33	1	0	1	0	0	0	0
..........................................................................................TTC------------------GTTCAAACAATCGATTGCCT........................................................................................	23	3	0.33	1	0	1	0	0	0	0
....................................................................GC------ACACTTTCGGGGTCTTC------------------GTTCAAAC....................................................................................................	27	3	0.33	1	0	1	0	0	0	0
....................................................................GC------ACACTTTCGGGGTCTTC------------------GTTCAAA.....................................................................................................	26	3	0.33	1	0	1	0	0	0	0
........................................................................................TCTTC------------------GTTCAAACAATCGATTGCC.........................................................................................	24	3	0.33	1	0	1	0	0	0	0
.................................................................................................................TCAAACAATCGATTGCCTTCAAG...................................................................................	23	3	0.33	1	0	1	0	0	0	0
........................................................................................TCTTC------------------GTTCAAACAATCGATTGCCTTC......................................................................................	27	3	0.33	1	0	1	0	0	0	0
............................................................................ACACTTTCGGGGTCTTC------------------GTT.........................................................................................................	20	3	0.33	1	0	0	1	0	0	0

dp5

TCGGATGGATGAAATCGAAAAAATATTTATGTCGTCCATCAGCTCCTCATTTTCGAGATCAATGCTGAGC------ACACTTCCGAGGTCTTC------------------GTTCAAACAATCGATTGCCTTTAAGACATTCTTACCATTG--------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droWil2

TTTGATCGAACGTATTGAATAAATTTTCAGATCTTTTAGCAGTCCATCATCATCCAAGTCCTCAGCAACTTCTTCTTCATCTTCGGAATCATT------------------GTTCAGTAATTCCACTGCCTTTATCATATTTCGACCATTGTCGGTTGTGATGGTATAGACTTGCTTTCTGGATATGCTAAAATCAGTCAATATAGACTTGATCTCAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....ATCGAACGTATTGAATAAATTTTCAGA............................................................................................................................................................................................	27	2	45.50	91	0	35	0	56	0
....................................TAGCAGTCCATCATCATCCAAGTCC..............................................................................................................................................................	25	6	9.17	55	0	44	0	11	0
..................................TTTAGCAGTCCATCATCATCCAAGTCC..............................................................................................................................................................	27	6	7.00	42	0	30	0	12	0
....ATCGAACGTATTGAATAAATTTTCAGATC..........................................................................................................................................................................................	29	2	5.00	10	0	10	0	0	0
.....................................................................................................................................................TGTCGGTTGTGATGGTATAGACT...............................................	23	5	4.80	24	0	1	1	22	0
............................................................................................................................................TTCGACCATTGTCGGTTGTGATGG.......................................................	24	8	3.75	30	0	5	0	25	0
.....................................................................................................................................................TGTCGGTTGTGATGGTATAGACTTG.............................................	25	5	3.60	18	0	9	0	9	0
.....TCGAACGTATTGAATAAATTTTCAGA............................................................................................................................................................................................	26	2	3.00	6	0	6	0	0	0
.................................TTTTAGCAGTCCATCATCATCCAAG.................................................................................................................................................................	25	6	2.83	17	0	7	0	10	0
...............................TCTTTTAGCAGTCCATCATCATCCAAG.................................................................................................................................................................	27	6	2.83	17	0	9	0	8	0
....................................TAGCAGTCCATCATCATCCAAGTCCT.............................................................................................................................................................	26	6	2.83	17	0	6	0	11	0
............................................................................................................................................TTCGACCATTGTCGGTTGTGATGGT......................................................	25	8	2.50	20	0	4	0	16	0
....................................TAGCAGTCCATCATCATCCAAGTCCTC............................................................................................................................................................	27	5	2.40	12	0	9	0	3	0
.......................................................................................................................................................................................TATGCTAAAATCAGTCAATATAGACT..........	26	7	2.29	16	0	11	0	5	0
.....................................................................................................................................................TGTCGGTTGTGATGGTATAGACTTGC............................................	26	5	2.20	11	0	2	2	7	0
..................................TTTAGCAGTCCATCATCATCCAAGT................................................................................................................................................................	25	6	2.17	13	0	1	0	11	1
.....TCGAACGTATTGAATAAATTTTCAGATC..........................................................................................................................................................................................	28	2	2.00	4	0	4	0	0	0
..................................TTTAGCAGTCCATCATCATCCAAGTC...............................................................................................................................................................	26	6	2.00	12	0	2	0	10	0
................................................................................................................TTCAGTAATTCCACTGCCTTTATCA..................................................................................	25	5	1.80	9	0	9	0	0	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGACTTGCTT..........................................	26	5	1.80	9	1	1	0	7	0
..........................................TCCATCATCATCCAAGTCCTCAGCAACT.....................................................................................................................................................	28	4	1.75	7	0	7	0	0	0
................................................................................................................TTCAGTAATTCCACTGCCTTTATCATAT...............................................................................	28	3	1.67	5	0	5	0	0	0
..TGATCGAACGTATTGAATAAATTT.................................................................................................................................................................................................	24	5	1.60	8	1	7	0	0	0
.....................................................................................................................................................TGTCGGTTGTGATGGTATAGACTT..............................................	24	5	1.20	6	0	2	0	4	0
..................................................................................................................................................CATTGTCGGTTGTGATGGTATAGACT...............................................	26	5	1.20	6	0	0	0	6	0
.....................................AGCAGTCCATCATCATCCAAGTCCTC............................................................................................................................................................	26	5	1.20	6	0	4	0	2	0
..................................TTTAGCAGTCCATCATCATCCAAG.................................................................................................................................................................	24	6	1.17	7	0	2	0	5	0
....ATCGAACGTATTGAATAAATTTTCAG.............................................................................................................................................................................................	26	2	1.00	2	0	1	0	1	0
...................................TTAGCAGTCCATCATCATCCAAGTCC..............................................................................................................................................................	26	6	1.00	6	0	4	0	1	1
.............................................................TCAGCAACTTCTTCTTCATCTTCGGAAT..................................................................................................................................	28	4	1.00	4	0	4	0	0	0
................................................................................................................................................................................TTCTGGATATGCTAAAATCAGTCAATA................	27	8	1.00	8	0	4	0	4	0
.................................TTTTAGCAGTCCATCATCATCCAAGT................................................................................................................................................................	26	6	1.00	6	0	2	0	4	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGACT...............................................	21	5	1.00	5	0	1	0	4	0
............................................................................................................................................................TGTGATGGTATAGACTTGCTTTCTGG.....................................	26	5	0.80	4	0	3	0	1	0
............................................................................................................................................................TGTGATGGTATAGACTTGCTTTCTG......................................	25	5	0.80	4	0	0	0	4	0
..............................................................................................................................................................TGATGGTATAGACTTGCTTTCTGGATA..................................	27	5	0.80	4	0	3	0	1	0
........................................................................................TCATT------------------GTTCAGTAATTCCACTGCCTT.......................................................................................	26	5	0.80	4	0	4	0	0	0
............................................................................................T------------------GTTCAGTAATTCCACTGCCTTTATCA..................................................................................	27	5	0.80	4	0	4	0	0	0
.............................................................TCAGCAACTTCTTCTTCATCTTCGG.....................................................................................................................................	25	4	0.75	3	0	3	0	0	0
...................TAAATTTTCAGATCTTTTAGCAGTCCAT............................................................................................................................................................................	28	4	0.75	3	0	0	0	3	0
...................TAAATTTTCAGATCTTTTAGCAGTCCA.............................................................................................................................................................................	27	4	0.75	3	0	1	0	2	0
............................................................................................................................................TTCGACCATTGTCGGTTGTGATGGTA.....................................................	26	8	0.75	6	0	0	0	6	0
..........................................TCCATCATCATCCAAGTCCTCAGCAAC......................................................................................................................................................	27	4	0.75	3	0	3	0	0	0
.................................TTTTAGCAGTCCATCATCATCCAAGTCC..............................................................................................................................................................	28	6	0.67	4	0	3	0	1	0
..................................TTTAGCAGTCCATCATCATCCAAGTCCT.............................................................................................................................................................	28	6	0.67	4	0	1	0	3	0
............................................................................................................................................................................TGCTTTCTGGATATGCTAAAATCAGTC....................	27	8	0.63	5	0	1	0	4	0
.................................................................................................................................................................TGGTATAGACTTGCTTTCTGGATATG................................	26	5	0.60	3	0	2	0	1	0
.................................................................................................................................................................TGGTATAGACTTGCTTTCTGGATAT.................................	25	5	0.60	3	0	2	0	1	0
.................................................................................................................................................................TGGTATAGACTTGCTTTCTGGATATGC...............................	27	5	0.60	3	0	2	0	1	0
....................................................TCCAAGTCCTCAGCAACTTCTTCTTCA............................................................................................................................................	27	5	0.60	3	0	3	0	0	0
..................................TTTAGCAGTCCATCATCATCCAAGTCCTC............................................................................................................................................................	29	5	0.60	3	0	2	0	1	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGACTTGC............................................	24	5	0.60	3	0	0	0	3	0
..........................................TCCATCATCATCCAAGTCCTCAGCA........................................................................................................................................................	25	5	0.60	3	0	3	0	0	0
....................AAATTTTCAGATCTTTTAGCAGTCCAT............................................................................................................................................................................	27	4	0.50	2	0	0	0	2	0
.........ACGTATTGAATAAATTTTCAGATCT.........................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
..TGATCGAACGTATTGAATAAATTTTC...............................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
...................................TTAGCAGTCCATCATCATCCAAGTCCT.............................................................................................................................................................	27	6	0.50	3	0	2	0	1	0
....ATCGAACGTATTGAATAAATTTTCAGAT...........................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0
...........................................................................................................................................TTTCGACCATTGTCGGTTGTGATGG.......................................................	25	8	0.50	4	0	0	0	4	0
........................TTTCAGATCTTTTAGCAGTCCATCA..........................................................................................................................................................................	25	4	0.50	2	0	0	0	2	0
.....................................AGCAGTCCATCATCATCCAAGTCC..............................................................................................................................................................	24	6	0.50	3	0	3	0	0	0
....................................TAGCAGTCCATCATCATCCAAGTC...............................................................................................................................................................	24	6	0.50	3	0	3	0	0	0
.....TCGAACGTATTGAATAAATTTTCAGATCT.........................................................................................................................................................................................	29	2	0.50	1	0	1	0	0	0
......CGAACGTATTGAATAAATTTTCAGATC..........................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0
............................................................................................................................................................................TGCTTTCTGGATATGCTAAAATCA.......................	24	9	0.44	4	0	3	0	1	0
.........................................................................................................................................................................................TGCTAAAATCAGTCAATATAGACT..........	24	7	0.43	3	0	2	0	1	0
.....................................................................TTCTTCTTCATCTTCGGAATCATT------------------G...........................................................................................................	25	7	0.43	3	0	3	0	0	0
..............................................................................................................................................................TGATGGTATAGACTTGCTTTCTGGA....................................	25	5	0.40	2	0	0	0	2	0
...............................................CATCATCCAAGTCCTCAGCAACTT....................................................................................................................................................	24	5	0.40	2	0	2	0	0	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGACTTGCTTT.........................................	27	5	0.40	2	0	0	0	2	0
..............................................TCATCATCCAAGTCCTCAGCAACTTCT..................................................................................................................................................	27	5	0.40	2	0	2	0	0	0
.....................................AGCAGTCCATCATCATCCAAGTCCTCAG..........................................................................................................................................................	28	5	0.40	2	0	1	0	1	0
..........................................TCCATCATCATCCAAGTCCTCAGC.........................................................................................................................................................	24	5	0.40	2	0	1	0	1	0
...........................................................................................TT------------------GTTCAGTAATTCCACTGCCTTTATCA..................................................................................	28	5	0.40	2	0	1	0	1	0
.........................................................................................CATT------------------GTTCAGTAATTCCACTGCCTT.......................................................................................	25	5	0.40	2	0	1	0	1	0
.................................................TCATCCAAGTCCTCAGCAACTTCT..................................................................................................................................................	24	5	0.40	2	0	2	0	0	0
....................................................................................................................................................TTGTCGGTTGTGATGGTATAGACT...............................................	24	5	0.40	2	0	0	0	2	0
........................................................................................................................................................CGGTTGTGATGGTATAGACTTGCTT..........................................	25	5	0.40	2	0	1	0	1	0
............................................................................................T------------------GTTCAGTAATTCCACTGCCTTTATC...................................................................................	26	5	0.40	2	0	2	0	0	0
..............................................TCATCATCCAAGTCCTCAGCAACTTC...................................................................................................................................................	26	5	0.40	2	0	2	0	0	0
....................................TAGCAGTCCATCATCATCCAAGTCCTCAG..........................................................................................................................................................	29	5	0.40	2	0	2	0	0	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGACTTGCT...........................................	25	5	0.40	2	0	0	0	2	0
....................................................................................................................................................................TATAGACTTGCTTTCTGGATATGC...............................	24	5	0.40	2	0	0	0	2	0
.....................................................................................................................................................TGTCGGTTGTGATGGTATAGACTTGCT...........................................	27	5	0.40	2	0	2	0	0	0
.............................................................................................................................................TCGACCATTGTCGGTTGTGATGG.......................................................	23	9	0.33	3	0	1	0	2	0
................GAATAAATTTTCAGATCTTTTAGC...................................................................................................................................................................................	24	3	0.33	1	0	0	0	1	0
..............................ATCTTTTAGCAGTCCATCATCATCCAAG.................................................................................................................................................................	28	6	0.33	2	0	2	0	0	0
......................................................................................................................................TCATATTTCGACCATTGTCGGTTG.............................................................	24	3	0.33	1	0	1	0	0	0
...................................................................................................................................TTATCATATTTCGACCATTGT...................................................................	21	3	0.33	1	0	0	0	1	0
............................................................................................................................................................................TGCTTTCTGGATATGCTAAAATCAG......................	25	9	0.33	3	0	2	0	1	0
.........................................................................................................................TCCACTGCCTTTATCATATTTCGACCAT......................................................................	28	3	0.33	1	0	0	0	1	0
....................................................................................................................................TATCATATTTCGACCATTGTCGGT...............................................................	24	3	0.33	1	0	0	0	1	0
...................................................................................................................................TTATCATATTTCGACCATTGTCGGT...............................................................	25	3	0.33	1	0	1	0	0	0
.....................................AGCAGTCCATCATCATCCAAGTCCT.............................................................................................................................................................	25	6	0.33	2	0	1	0	1	0
..............................................................................................................................TGCCTTTATCATATTTCGACCATTGT...................................................................	26	3	0.33	1	0	0	0	1	0
..............................................................................................................................TGCCTTTATCATATTTCGACCATTGTCGG................................................................	29	3	0.33	1	0	0	0	1	0
....................................TAGCAGTCCATCATCATCCAAGT................................................................................................................................................................	23	6	0.33	2	0	0	0	2	0
.................................................................................................................TCAGTAATTCCACTGCCTTTATCATAT...............................................................................	27	3	0.33	1	0	1	0	0	0
...............TGAATAAATTTTCAGATCTTTTAGCAG.................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0
........................................................................................................................TTCCACTGCCTTTATCATATTTCGACCA.......................................................................	28	3	0.33	1	0	1	0	0	0
................................................................................................................TTCAGTAATTCCACTGCCTTTATCATA................................................................................	27	3	0.33	1	0	0	0	1	0
......................................GCAGTCCATCATCATCCAAGTCC..............................................................................................................................................................	23	6	0.33	2	0	2	0	0	0
........................................................................................................................TTCCACTGCCTTTATCATATTTCGACC........................................................................	27	3	0.33	1	0	1	0	0	0
.............................................................TCAGCAACTTCTTCTTCATCTTCGGAA...................................................................................................................................	27	4	0.25	1	0	1	0	0	0
.........................TTCAGATCTTTTAGCAGTCCATCAT.........................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
......................................................................TCTTCTTCATCTTCGGAATCATT------------------GTTCAG......................................................................................................	29	4	0.25	1	0	0	1	0	0
.............................................................TCAGCAACTTCTTCTTCATCTTCGGAAA..................................................................................................................................	28	4	0.25	1	0	1	0	0	0
...........................CAGATCTTTTAGCAGTCCATCATCA.......................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
..........................................................TCCTCAGCAACTTCTTCTTCATCTTCG......................................................................................................................................	27	4	0.25	1	0	0	0	1	0
...........................................................................TTCATCTTCGGAATCATT------------------GTTCAGT.....................................................................................................	25	4	0.25	1	0	1	0	0	0
.......................TTTTCAGATCTTTTAGCAGTCCAT............................................................................................................................................................................	24	4	0.25	1	0	0	0	1	0
.......................TTTTCAGATCTTTTAGCAGTCCATC...........................................................................................................................................................................	25	4	0.25	1	0	0	0	1	0
............................................................................TCATCTTCGGAATCATT------------------GTTCAGTAA...................................................................................................	26	4	0.25	1	0	1	0	0	0
..........................TCAGATCTTTTAGCAGTCCATCATCA.......................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0
...................TAAATTTTCAGATCTTTTAGCAGTC...............................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
..............................................................CAGCAACTTCTTCTTCATCTTCGGAAT..................................................................................................................................	27	4	0.25	1	0	1	0	0	0
..................................................................................TCGGAATCATT------------------GTTCAGTAATTCCAC.............................................................................................	26	4	0.25	1	0	1	0	0	0
........................TTTCAGATCTTTTAGCAGTCCAT............................................................................................................................................................................	23	4	0.25	1	0	0	0	1	0
.............................................................TCAGCAACTTCTTCTTCATCTTCGGA....................................................................................................................................	26	4	0.25	1	0	1	0	0	0
.....................AATTTTCAGATCTTTTAGCAGTCCAT............................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0
...........................................................................TTCATCTTCGGAATCATT------------------GTTCAGTAAT..................................................................................................	28	4	0.25	1	0	1	0	0	0
........................TTTCAGATCTTTTAGCAGTCCATCATCA.......................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0
...................TAAATTTTCAGATCTTTTAGCAGTCC..............................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0
............................................................................TCATCTTCGGAATCATT------------------GTTCAGTAAT..................................................................................................	27	4	0.25	1	0	1	0	0	0
.......................TTTTCAGATCTTTTAGCAGTCCATCA..........................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0
.........................TTCAGATCTTTTAGCAGTCCATCATCA.......................................................................................................................................................................	27	4	0.25	1	0	0	0	1	0
...............................................................................................................................................GACCATTGTCGGTTGTGATGGT......................................................	22	9	0.22	2	0	0	1	1	0
.............................................................................................................................................TCGACCATTGTCGGTTGTGATGGT......................................................	24	9	0.22	2	0	2	0	0	0
............................................................................................................................................................................TGCTTTCTGGATATGCTAAAATCAGT.....................	26	9	0.22	2	0	0	0	2	0
.....................................................................................................................................................TGTCGGTTGTGATGGTATAGACTTGCTT..........................................	28	5	0.20	1	0	0	0	1	0
......................................GCAGTCCATCATCATCCAAGTCCTCAG..........................................................................................................................................................	27	5	0.20	1	0	0	0	1	0
........................................................................................................................................................CGGTTGTGATGGTATAGACTTGCT...........................................	24	5	0.20	1	0	0	0	1	0
...................................................................................................................................................ATTGTCGGTTGTGATGGTATAGACT...............................................	25	5	0.20	1	1	0	0	0	0
.................................................TCATCCAAGTCCTCAGCAACTTCTTC................................................................................................................................................	26	5	0.20	1	0	1	0	0	0
.................................................................................................................................................................TGGTATAGACTTGCTTTCTGGATA..................................	24	5	0.20	1	0	1	0	0	0
....................................................TCCAAGTCCTCAGCAACTTCTTCTTC.............................................................................................................................................	26	5	0.20	1	0	1	0	0	0
...........................................................................................................................................................TTGTGATGGTATAGACTTGCTTTCTGG.....................................	27	5	0.20	1	0	0	0	1	0
...............................................CATCATCCAAGTCCTCAGCAACTTCTTC................................................................................................................................................	28	5	0.20	1	0	1	0	0	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGACTTG.............................................	23	5	0.20	1	0	1	0	0	0
......................................................................................................................................................................TAGACTTGCTTTCTGGATATGCTAAAA..........................	27	5	0.20	1	0	0	0	1	0
....................................................................................................................................................................TATAGACTTGCTTTCTGGATATGCT..............................	25	5	0.20	1	0	0	0	1	0
..................................................................................................................................................CATTGTCGGTTGTGATGGTATAGA.................................................	24	5	0.20	1	0	0	0	1	0
......................................................................................................................................................GTCGGTTGTGATGGTATAGAC................................................	21	5	0.20	1	0	1	0	0	0
.....................................................................................GAATCATT------------------GTTCAGTAATTCCACTGCCTT.......................................................................................	29	5	0.20	1	0	1	0	0	0
................................................................................................................TTCAGTAATTCCACTGCCTTTATCAA.................................................................................	26	5	0.20	1	0	1	0	0	0
.....................................................CCAAGTCCTCAGCAACTTCTTCTT..............................................................................................................................................	24	5	0.20	1	0	1	0	0	0
..........................................................................................................................................................GTTGTGATGGTATAGACTTGCTTTCT.......................................	26	5	0.20	1	0	0	0	1	0
....................................................................................................................................................................TATAGACTTGCTTTCTGGATATGCC..............................	25	5	0.20	1	0	1	0	0	0
...........................................................................................................................................................TTGTGATGGTATAGACTTGCTTTCT.......................................	25	5	0.20	1	0	1	0	0	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGACTTGCTTC.........................................	27	5	0.20	1	0	0	0	1	0
..............................................................................................................................................CGACCATTGTCGGTTGTGATGGTATAGAC................................................	29	5	0.20	1	0	0	0	1	0
.................................................................................................................TCAGTAATTCCACTGCCTTTATCA..................................................................................	24	5	0.20	1	0	1	0	0	0
...........................CAGATCTTTTAGCAGTCCATCATCAGA.....................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0
...................................................................................................................................................ATTGTCGGTTGTGATGGTATAGAC................................................	24	5	0.20	1	0	0	0	1	0
................................................................................................................TTCAGTAATTCCACTGCCTTTATCAT.................................................................................	26	5	0.20	1	0	1	0	0	0
..TGATCGAACGTATTGAATAAATT..................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0
.................................................................................................................................................CCATTGTCGGTTGTGATGGTATAG..................................................	24	5	0.20	1	0	1	0	0	0
....................................................TCCAAGTCCTCAGCAACTTCTTCTT..............................................................................................................................................	25	5	0.20	1	0	1	0	0	0
...........................................................................................................................................................TTGTGATGGTATAGACTTGCT...........................................	21	5	0.20	1	0	0	0	1	0
............................................................................................T------------------GTTCAGTAATTCCACTGCCTTTA.....................................................................................	24	5	0.20	1	0	1	0	0	0
....................................................................................................................................................TTGTCGGTTGTGATGGTATAGACTTGC............................................	27	5	0.20	1	0	0	0	1	0
............................................................................................T------------------GTTCAGTAATTCCACTGCCTTTAT....................................................................................	25	5	0.20	1	0	1	0	0	0
..................................................................................................................................................................GGTATAGACTTGCTTTCTGGATATGC...............................	26	5	0.20	1	0	1	0	0	0
..................................................................................................................................................CATTGTCGGTTGTGATGGTATAGAC................................................	25	5	0.20	1	0	0	0	1	0
....................................................TCCAAGTCCTCAGCAACTTCTTCTTCAC...........................................................................................................................................	28	5	0.20	1	0	1	0	0	0
...............................................CATCATCCAAGTCCTCAGCAACTTCT..................................................................................................................................................	26	5	0.20	1	0	1	0	0	0
.................................................TCATCCAAGTCCTCAGCAACTTCTTCTA..............................................................................................................................................	28	5	0.20	1	0	1	0	0	0
........................................................................................................................................................CGGTTGTGATGGTATAGACTTGCTTT.........................................	26	5	0.20	1	0	0	0	1	0
.TTGATCGAACGTATTGAATAAATTT.................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
.................................................TCATCCAAGTCCTCAGCAACTTCTTCTT..............................................................................................................................................	28	5	0.20	1	0	1	0	0	0
........................................AGTCCATCATCATCCAAGTCCTCA...........................................................................................................................................................	24	5	0.20	1	0	1	0	0	0
....................................................TCCAAGTCCTCAGCAACTTCTTCTTCAT...........................................................................................................................................	28	5	0.20	1	0	1	0	0	0
............................................CATCATCATCCAAGTCCTCAGCAACT.....................................................................................................................................................	26	5	0.20	1	0	1	0	0	0
......................................................................................................................................................................TAGACTTGCTTTCTGGATATGCTAAA...........................	26	5	0.20	1	0	1	0	0	0
.......................................................................................................................................................TCGGTTGTGATGGTATAGA.................................................	19	5	0.20	1	0	0	0	1	0
.......................................CAGTCCATCATCATCCAAGTCCTCAG..........................................................................................................................................................	26	5	0.20	1	0	1	0	0	0
...............................TCTTTTAGCAGTCCATCATCATCCAAGT................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0
.........................................................................................CATT------------------GTTCAGTAATTCCACT............................................................................................	20	6	0.17	1	0	1	0	0	0
................................................................GCAACTTCTTCTTCATCTTCGGAAT..................................................................................................................................	25	6	0.17	1	0	1	0	0	0
................................CTTTTAGCAGTCCATCATCATCCAAG.................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
............................................................................................T------------------GTTCAGTAATTCCACTGCCTT.......................................................................................	22	6	0.17	1	0	1	0	0	0
...................................................................ACTTCTTCTTCATCTTCGGAATCAT...............................................................................................................................	25	6	0.17	1	0	1	0	0	0
....................................TAGCAGTCCATCATCATCCAAG.................................................................................................................................................................	22	6	0.17	1	0	0	0	1	0
...............................................................AGCAACTTCTTCTTCATCTTCGGAAT..................................................................................................................................	26	6	0.17	1	0	1	0	0	0
.................................TTTTAGCAGTCCATCATCATCCAAGTC...............................................................................................................................................................	27	6	0.17	1	0	1	0	0	0
.................................................................CAACTTCTTCTTCATCTTCGGAATC.................................................................................................................................	25	6	0.17	1	0	1	0	0	0
.....................................................................................................................................................TGTCGGTTGTGATGGTATAGACA...............................................	23	6	0.17	1	0	0	0	1	0
...................................................................ACTTCTTCTTCATCTTCGGAATCATT------------------GT..........................................................................................................	28	6	0.17	1	0	1	0	0	0
................................................................GCAACTTCTTCTTCATCTTCGGAATCA................................................................................................................................	27	6	0.17	1	0	1	0	0	0
....................................TAGCAGTCCATCATCATCCAAGTCCA.............................................................................................................................................................	26	6	0.17	1	0	0	0	1	0
...................................TTAGCAGTCCATCATCATCCAAGTC...............................................................................................................................................................	25	6	0.17	1	0	0	0	1	0
........................................................................................................................................................................................ATGCTAAAATCAGTCAATATAGACT..........	25	7	0.14	1	0	1	0	0	0
......................................................................TCTTCTTCATCTTCGGAATCATT------------------GT..........................................................................................................	25	7	0.14	1	0	1	0	0	0
.....................................................................TTCTTCTTCATCTTCGGAATCATT------------------GT..........................................................................................................	26	7	0.14	1	0	1	0	0	0
...........................................................................................................................................................................TTGCTTTCTGGATATGCTAAAATCAGTC....................	28	7	0.14	1	0	0	0	1	0
............................................................................................................................................TTCGACCATTGTCGGTTGTGATG........................................................	23	8	0.13	1	0	1	0	0	0
...............................................................................................................................................................................TTTCTGGATATGCTAAAATCAGTCAA..................	26	8	0.13	1	0	0	0	1	0
..................................................................................................................................................................................CTGGATATGCTAAAATCAGTCAATA................	25	8	0.13	1	0	1	0	0	0
...............................................................................................................................................................................TTTCTGGATATGCTAAAATCAGTCAATA................	28	8	0.13	1	0	0	0	1	0
.................................TTTTAGCAGTCCATCATCA.......................................................................................................................................................................	19	8	0.13	1	0	0	0	1	0
.................................................................................................................................................................................TCTGGATATGCTAAAATCAGTCAATA................	26	8	0.13	1	0	0	0	1	0
...........................................................................................................................................TTTCGACCATTGTCGGTTGTGATGGT......................................................	26	8	0.13	1	0	1	0	0	0
.............................................................................................................................................................................GCTTTCTGGATATGCTAAAATCAG......................	24	9	0.11	1	0	1	0	0	0
...................................................................................................................AGTAATTCCACTGCCTTTATCA..................................................................................	22	9	0.11	1	0	1	0	0	0
.............................................................................................................................................TCGACCATTGTCGGTTGTGATGGTA.....................................................	25	9	0.11	1	0	1	0	0	0
..................................................................................................................................................CATTGTCGGTTGTGATGGT......................................................	19	10	0.10	1	0	0	0	1	0
............................................................................................................................................TTCGACCATTGTCGGTTG.............................................................	18	10	0.10	1	0	1	0	0	0
..............................................................................................................................................CGACCATTGTCGGTTGTGATTA.......................................................	22	10	0.10	1	0	0	0	1	0

droMoj3

TCGAATTGTTGAGATCGAAAAAACATTTATGCTGTCCATCAGCTGCTCATTTTCGATATCAGCACTGAGC------ACATTTTCGAGGTCTTC------------------GTTCAAGCAATCAATTGCCTTTACGACATTTCTGCCATTGTCTGAAGTGATTGTATATAATTGCTGCTTTGAAATCGAAAACTCTGCCAAAATATTTTCAATTTCTAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........TGAGATCGAAAAAACATTTATGCTG.........................................................................................................................................................................................	25	4	65.50	262	249	2	0	0	9	2
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCAATCAAT.............................................................................................	27	1	26.00	26	25	0	0	0	1	0
..........GAGATCGAAAAAACATTTATGCTGTCC......................................................................................................................................................................................	27	4	23.75	95	41	0	0	0	53	1
..........GAGATCGAAAAAACATTTATGCTGTC.......................................................................................................................................................................................	26	4	20.50	82	47	0	0	0	35	0
..........GAGATCGAAAAAACATTTATGCTG.........................................................................................................................................................................................	24	4	16.75	67	63	0	0	0	4	0
...............................................................................TTTTCGAGGTCTTC------------------GTTCAAGCAATCAAT.............................................................................................	29	1	13.00	13	11	0	0	0	2	0
..............................................................................................................................TGCCTTTACGACATTTCTGCCATTGTC..................................................................	27	2	11.50	23	18	0	0	0	5	0
..............TCGAAAAAACATTTATGCTGTCCATC...................................................................................................................................................................................	26	4	9.50	38	32	0	0	0	6	0
..........GAGATCGAAAAAACATTTATGCTGTCCA.....................................................................................................................................................................................	28	4	8.25	33	30	0	0	0	3	0
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCAATC................................................................................................	24	1	8.00	8	4	0	0	0	4	0
.........TGAGATCGAAAAAACATTTATGCTGTC.......................................................................................................................................................................................	27	4	7.25	29	20	1	0	0	8	0
...............................................................................................................................................................................TGCTTTGAAATCGAAAACTCTGCCAAA.................	27	3	7.00	21	21	0	0	0	0	0
..........GAGATCGAAAAAACATTTATGCTGT........................................................................................................................................................................................	25	4	7.00	28	12	0	0	0	16	0
..........GAGATCGAAAAAACATTTATGCTGTCCAT....................................................................................................................................................................................	29	4	5.25	21	17	0	0	0	4	0
...............................................................................TTTTCGAGGTCTTC------------------GTTCAAGCAATC................................................................................................	26	1	5.00	5	3	0	0	0	2	0
..................................................................................TCGAGGTCTTC------------------GTTCAAGCAATCAAT.............................................................................................	26	1	5.00	5	5	0	0	0	0	0
...............................................................................................................................................................................TGCTTTGAAATCGAAAACTCTGCCA...................	25	3	5.00	15	15	0	0	0	0	0
...................................................TTCGATATCAGCACTGAGC------ACATTT.........................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0
...............................................................................TTTTCGAGGTCTTC------------------GTTCAAGCAATCA...............................................................................................	27	1	4.00	4	4	0	0	0	0	0
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCAATCAA..............................................................................................	26	1	4.00	4	3	0	0	0	1	0
...............................................................................TTTTCGAGGTCTTC------------------GTTCAAGCAA..................................................................................................	24	1	4.00	4	4	0	0	0	0	0
.........TGAGATCGAAAAAACATTTATGCTGTCC......................................................................................................................................................................................	28	4	4.00	16	11	0	0	0	5	0
.........TGAGATCGAAAAAACATTTATGCTGT........................................................................................................................................................................................	26	4	3.75	15	6	0	0	0	8	1
...............................................................................................................................................................................TGCTTTGAAATCGAAAACTCTGCC....................	24	3	3.67	11	8	0	0	0	3	0
..............TCGAAAAAACATTTATGCTGTCCAT....................................................................................................................................................................................	25	4	3.25	13	13	0	0	0	0	0
...............................................................................TTTTCGAGGTCTTC------------------GTTCAAGCAATCAA..............................................................................................	28	1	3.00	3	3	0	0	0	0	0
..............................................TCATTTTCGATATCAGCACTGAGC------AC.............................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCAATCA...............................................................................................	25	1	3.00	3	2	0	0	0	1	0
...............................................................................................................................................................................TGCTTTGAAATCGAAAACTCTGCCAAAA................	28	3	2.33	7	7	0	0	0	0	0
...............................................................................................................................................................................TGCTTTGAAATCGAAAACTCTGCCAA..................	26	3	2.33	7	7	0	0	0	0	0
...............................................................................TTTTCGAGGTCTTC------------------GTTCAAGCA...................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.........TGAGATCGAAAAAACATTTATGCT..........................................................................................................................................................................................	24	4	2.00	8	7	0	0	0	1	0
..................................TCCATCAGCTGCTCATTTTCGATATC...............................................................................................................................................................	26	2	2.00	4	2	0	0	0	2	0
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCAATCAAC.............................................................................................	27	1	2.00	2	0	0	0	0	2	0
....................................................TCGATATCAGCACTGAGC------ACATTT.........................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
..............................................TCATTTTCGATATCAGCACTGAGC------ACA............................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................TTGCCTTTACGACATTTCTGCCATTGTC..................................................................	28	2	1.50	3	2	0	0	0	1	0
.........TGAGATCGAAAAAACATTTATGCTGC........................................................................................................................................................................................	26	4	1.50	6	1	0	0	0	5	0
.........TGAGATCGAAAAAACATTTATGCTGTCCA.....................................................................................................................................................................................	29	4	1.50	6	6	0	0	0	0	0
...........AGATCGAAAAAACATTTATGCTGTCCAT....................................................................................................................................................................................	28	4	1.25	5	5	0	0	0	0	0
...........AGATCGAAAAAACATTTATGCTGTCCA.....................................................................................................................................................................................	27	4	1.25	5	5	0	0	0	0	0
..........GAGATCGAAAAAACATTTATGCTGC........................................................................................................................................................................................	25	4	1.25	5	0	0	0	0	5	0
..........GAGATCGAAAAAACATTTATGC...........................................................................................................................................................................................	22	4	1.25	5	1	0	0	0	4	0
............................................................................ACATTTTCGAGGTCTTC------------------GTTCAAGC....................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................CTTTACGACATTTCTGCCATTGTC..................................................................	24	2	1.00	2	2	0	0	0	0	0
....................................................................................GAGGTCTTC------------------GTTCAAGCAATCAATTGC..........................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................ATTTTCGAGGTCTTC------------------GTTCAAGCA...................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........AGATCGAAAAAACATTTATGCTGTC.......................................................................................................................................................................................	25	4	1.00	4	4	0	0	0	0	0
...............................................................................................................................................TGCCATTGTCTGAAGTGATTGTATA...................................................	25	2	1.00	2	2	0	0	0	0	0
..............................................................................................................................TGCCTTTACGACATTTCTGCCATTGT...................................................................	26	2	1.00	2	2	0	0	0	0	0
........TTGAGATCGAAAAAACATTTATGCTG.........................................................................................................................................................................................	26	2	1.00	2	2	0	0	0	0	0
.........................................................ATCAGCACTGAGC------ACATTT.........................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCA...................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................GCCTTTACGACATTTCTGCCATTGTC..................................................................	26	2	1.00	2	2	0	0	0	0	0
...............................................................................TTTTCGAGGTCTTC------------------GTTCAAGCAAT.................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................TTTCGATATCAGCACTGAGC------ACATTT.........................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCAAT.................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................TCAGCACTGAGC------ACATTTTCGAGGTC.................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........AGATCGAAAAAACATTTATGCTG.........................................................................................................................................................................................	23	4	1.00	4	4	0	0	0	0	0
................................................................................TTTCGAGGTCTTC------------------GTTCAAGCA...................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................CGAGGTCTTC------------------GTTCAAGCAATC................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........AGATCGAAAAAACATTTATGCTGTCC......................................................................................................................................................................................	26	4	1.00	4	3	0	0	0	1	0
...................................................TTCGATATCAGCACTGAGC------ACATT..........................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................TTTACGACATTTCTGCCATTGTCTGAAG.............................................................	28	2	1.00	2	2	0	0	0	0	0
...............................................................................................................................................................................TGCTTTGAAATCGAAAACTCTGC.....................	23	3	1.00	3	3	0	0	0	0	0
..................................................................................TCGAGGTCTTC------------------GTTCAAGCAATCAA..............................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................TTCGAGGTCTTC------------------GTTCAAGCAATCAATC............................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................TTCGATATCAGCACTGAGC------ACATTTT........................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............CGAAAAAACATTTATGCTGTCCATC...................................................................................................................................................................................	25	4	0.75	3	2	0	0	0	1	0
..............TCGAAAAAACATTTATGCTGTCCATCAG.................................................................................................................................................................................	28	4	0.75	3	3	0	0	0	0	0
.........TGAGATCGAAAAAACATTTATGC...........................................................................................................................................................................................	23	4	0.75	3	1	0	0	0	2	0
..................................TCCATCAGCTGCTCATTTTCGATA.................................................................................................................................................................	24	3	0.67	2	2	0	0	0	0	0
................................................................................................................................................................................GCTTTGAAATCGAAAACTCTGCCAAA.................	26	3	0.67	2	2	0	0	0	0	0
....................................................................................................................AGCAATCAATTGCCTTTACGACATTTC............................................................................	27	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................TTTACGACATTTCTGCCATTGTCTGAAGC............................................................	29	2	0.50	1	1	0	0	0	0	0
.........TGAGATCGAAAAAACATTTATG............................................................................................................................................................................................	22	4	0.50	2	2	0	0	0	0	0
.................................................................................................................................................................TTGTATATAATTGCTGCTTTGAAA..................................	24	2	0.50	1	0	0	0	0	1	0
..............................................TCATTTTCGATATCAGCACTGAGC------...............................................................................................................................................	24	2	0.50	1	0	0	0	0	1	0
............................................................................................C------------------GTTCAAGCAATCAATTGCCTTTA.....................................................................................	24	2	0.50	1	1	0	0	0	0	0
......................................................................................................................................................GTCTGAAGTGATTGTATATAATTGCTGCT........................................	29	2	0.50	1	0	0	0	0	0	1
...............................................................................................................................GCCTTTACGACATTTCTGCCAT......................................................................	22	2	0.50	1	1	0	0	0	0	0
............................................GCTCATTTTCGATATCAGCACTG........................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................ATTGTCTGAAGTGATTGTATATAATTG.............................................	27	2	0.50	1	1	0	0	0	0	0
..........................................................................................................................CAATTGCCTTTACGACATTTCT...........................................................................	22	2	0.50	1	1	0	0	0	0	0
........................................................................................TCTTC------------------GTTCAAGCAATCAATTGCCT........................................................................................	25	2	0.50	1	0	0	0	0	1	0
..............TCGAAAAAACATTTATGCTGTCCA.....................................................................................................................................................................................	24	4	0.50	2	2	0	0	0	0	0
..............................................................................................................................TGCCTTTACGACATTTCTGCCATTGTCT.................................................................	28	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................TGAAGTGATTGTATATAATTGC............................................	22	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................TGCCTTTACGACATTTCTGCCATTGTCA.................................................................	28	2	0.50	1	1	0	0	0	0	0
.............ATCGAAAAAACATTTATGCTGT........................................................................................................................................................................................	22	4	0.50	2	0	0	0	0	2	0
...........................................TGCTCATTTTCGATATCAGCACTGAGC------...............................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
..........GAGATCGAAAAAACATTTATGCTGG........................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	2	0
..............................................................................................................................TGCCTTTACGACATTTCTGCCATTGC...................................................................	26	2	0.50	1	0	0	0	0	1	0
...........................................................................................TC------------------GTTCAAGCAATCAATTGCCTTTAC....................................................................................	26	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................GCCTTTACGACATTTCTGCCATT.....................................................................	23	2	0.50	1	1	0	0	0	0	0
......................................TCAGCTGCTCATTTTCGATATCAGC............................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
...........................................................................................................................................TTTCTGCCATTGTCTGAAG.............................................................	19	2	0.50	1	1	0	0	0	0	0
..GAATTGTTGAGATCGAAAAAACATTT...............................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
...........................................................................................................................................................................TTGCTGCTTTGAAATCGAAAACTCT.......................	25	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................TGCCTTTACGACATTTCTGCCATTG....................................................................	25	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................TACGACATTTCTGCCATTGTCTGAAG.............................................................	26	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................TTCTGCCATTGTCTGAAGTGATTGTA.....................................................	26	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................GCCTTTACGACATTTCTGCCATTGT...................................................................	25	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................TTTACGACATTTCTGCCATTGT...................................................................	22	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................TTGCCTTTACGACATTTCTGCCATTG....................................................................	26	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................................CATTGTCTGAAGTGATTGTATATA.................................................	24	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................TCAATTGCCTTTACGACATTTCTGCCA.......................................................................	27	2	0.50	1	1	0	0	0	0	0
........TTGAGATCGAAAAAACATTTATGCTGTC.......................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	1
..............................................TCATTTTCGATATCAGCACTG........................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................ATTGTCTGAAGTGATTGTATATAATT..............................................	26	2	0.50	1	0	0	0	0	1	0
...............CGAAAAAACATTTATGCTGTCC......................................................................................................................................................................................	22	4	0.50	2	1	0	0	0	1	0
..................................................................................................................................TTTACGACATTTCTGCCATTGTC..................................................................	23	2	0.50	1	1	0	0	0	0	0
...........AGATCGAAAAAACATTTATGCTGT........................................................................................................................................................................................	24	4	0.50	2	2	0	0	0	0	0
.............ATCGAAAAAACATTTATGCTGTCCA.....................................................................................................................................................................................	25	4	0.50	2	2	0	0	0	0	0
...........................................................................................................................................TTTCTGCCATTGTCTGAAGTGATTGTA.....................................................	27	2	0.50	1	1	0	0	0	0	0
...........................................................................................TC------------------GTTCAAGCAATCAATTGCCTTT......................................................................................	24	2	0.50	1	1	0	0	0	0	0
..............TCGAAAAAACATTTATGCTGTCC......................................................................................................................................................................................	23	4	0.50	2	1	0	0	0	1	0
...........................................................................................................................................TTTCTGCCATTGTCTGAAGTGATTGT......................................................	26	2	0.50	1	1	0	0	0	0	0
................................................................................................................................................................................GCTTTGAAATCGAAAACTCTGCCAAAA................	27	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTGAAATCGAAAACTCTGCCAAAAT...............	26	3	0.33	1	0	0	0	0	1	0
................................................................................................................................................................................GCTTTGAAATCGAAAACTCTGCCA...................	24	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................................................................TGCTTTGAAATCGAAAACTCTGCCAAAAA...............	29	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................................TTGAAATCGAAAACTCTGCCAAAATATT............	28	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................................................................................GAAATCGAAAACTCTGCCAAAAA...............	23	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTGAAATCGAAAACTCTGCCAAA.................	24	3	0.33	1	1	0	0	0	0	0
............GATCGAAAAAACATTTATGCTGTCC......................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
..............TCGAAAAAACATTTATGCTG.........................................................................................................................................................................................	20	4	0.25	1	1	0	0	0	0	0
..........GAGATCGAAAAAACATTTATGCTA.........................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	1	0
..............TCGAAAAAACATTTATGCTGTCCAC....................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	1	0
............GATCGAAAAAACATTTATGCTGTCCA.....................................................................................................................................................................................	26	4	0.25	1	1	0	0	0	0	0
................GAAAAAACATTTATGCTGTCCATCAGC................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	1	0
..........GAGATCGAAAAAACATTTATGCTGTCG......................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	1	0
..............TCGAAAAAACATTTATGCTGTCCATCA..................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
.................AAAAAACATTTATGCTGT........................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	1	0
..........GAGATCGAAAAAACATTTATGCTGTCCAA....................................................................................................................................................................................	29	4	0.25	1	1	0	0	0	0	0
..........GAGATCGAAAAAACATTT...............................................................................................................................................................................................	18	4	0.25	1	1	0	0	0	0	0
...............CGAAAAAACATTTATGCTGTCCATCAG.................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
...........AGATCGAAAAAACATTTATGCTGTCCATC...................................................................................................................................................................................	29	4	0.25	1	1	0	0	0	0	0
..........GAGATCGAAAAAACATTTATG............................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0	0
.........TGAGATCGAAAAAACATTTATGCTC.........................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
.........TGAGATCGAAAAAACATT................................................................................................................................................................................................	18	4	0.25	1	1	0	0	0	0	0
.........TGAGATCGAAAAAACATTT...............................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0

droBip1

TCGTATAGAAGCGGTGGAAAAAATTCTTACTTCTTGCACTAGCTCCTCATTTTCATCCTCGGAGCTTAGC------GCACTTTCGGGGTCTTC------------------AATTAAATGCTCTATTGCCTTAAAAATATTTTTGCCATTGTCGGACGTGATGGTATAGATTTGCTGCTTAGAAATTAAAAAATCTGCCAAAATATTTAAAATTTCACT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCGTATAGAAGCGATGGAAAAAATTCTTACTTCTTGCACCAGCTCCTTATTTTCATCCTCGAAGCTTAGA------ACACTTTCGGGGTCTTC------------------ATTTAAGTGCTCTATTGCCTTCAAAATATTTTTGCCATTGTCGGACGTAATGGTATAGATTTGCTGCTTAGAAATTGAAAAATCTGCCAAAATATTTTCAATTTCACT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGTATAGAAGCGATGGAAAAAATTCTTACTTCTTGCACTAGCTCCTCATTTTCATCCTCGAAGCTTAGC------GCACTTTCGGGGTCTTC------------------ATTTAAATGCTCTATTGCCTTCAAAATATTTTTGCCATTGTCGGACGTGATGGTATAGATTTGCTGCTTAGAAATTGAAAAATCTGCCAAAATATTTTCAATTTCACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTCACTGACTTTATAGAGTGAATTTGGATATTGGTCAGAAGTCCTTCTTTATCGGGATCCTCACCAGAA------ACTTCCTCGTTGTCTGCATCCTCATCATCGCAGCTGTTTAAAAGTTCCACTGG-TTTACCATGTTCCTTTCGTTGTCCGTCGTAATGGTGTAAATTTGGTCTTTTGAAATTAAAAATTCTATCTATATAGACTTATTTTCAG-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTGATCGAAATTATCGAGTGAACCATCACATCGTTTAAAACCTCGTCTTCGTCAAAGTCATCATTGGGG------GCATTATCAGCATCCTT------------------GCTCAAATATTCCACGGATTTTATTACATTCTTTCCATTATCTGATGTGACGGTGTATATTTGATCAATGGAAACTGAAAACTCATCCAAAATATTTTCGATTTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCGTATAGAAGAGATGGAAAAAATTCTTACTTCTTGCACTAGCTCCTCATTTTCATCCTCGGAGCTTAGC------GCACTTTCGGGGTCTTC------------------ATTTAAATGCTCTATTGCCTTCAAAATATTTTTGCCATTGTCGGACGTGATGGTATAAATTTGCTGCTTAGAAATTGAAAAATCTGCCAAAATATTTTCAATTTCACT	Size	Hit Count	Total Norm	Total
No Reads

dpe_172

scaffold_11:776055-776141 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.9	-24.8