ID:

dpe_1712

 Coordinate:

scaffold_464:8397-8547 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -7.5

Flybase annnotation

exon [dper_GLEANR_16947:2]; CDS [Dper\GL15642-cds]; intron [Dper\GL15642-in]

No Repeatable elements found

mature
star
  1. scaffold_13:920450-920473 +
  2. scaffold_13:931339-931362 +
  3. scaffold_91:152485-152508 -
  4. scaffold_258:13802-13825 +
  5. scaffold_123:32277-32300 -
  6. scaffold_123:49578-49601 +
  7. scaffold_123:58181-58204 -
  8. scaffold_738:9040-9063 +
  9. scaffold_399:10212-10235 -
  10. dpe_1712  scaffold_464:8503-8526 +
  11. scaffold_101:81101-81124 +
  12. scaffold_5358:1855-1878 -
  13. scaffold_9816:401-424 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGGTTGCCAGATCGGCCAACCAGTTTGAAAGTTGAGCGGCAACCGGAAAATCGCGCGGGCTCCAAATTTTAAATTTTAAATTTCAAATTTCAAATTTCAAATTCGAGTATTTGGCAATTACAAACAGGAAGAATGGAGGAGAAGTAAAAGCGGGTCTTTGAGAGGAGAACTAGCCTGCAGCGTTCCCCACCACATTGGCAGACACCCCGAGGCATTTGGCCCAGGGAGCAAGCAGTTGAGAAGCCGGCCCA
*************************************************************************************************************************............................((((((((((....)))).....))))))..*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V042
embryo
 V050
head
 M021
embryo
 V111
male body
....................CAGTTTGAAAGTTGAGCGGCAACC............................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
....................CAGTTTGAAAGTTGAGCGGCAAC................................................................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................................................................TTTGGCCCCGGGAGCAAGCTG................ 21 2 1 1.00 1 0 1 0 0 0 0
....................CAGTTTGAAAGTTGAGCGGCAACCGG............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................GAAGAATGGAGGGCAAGTAAAAG..................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................GAAGATTGGAGACGAAGTAAAAGC.................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................AAACAGGAAGAATGGAGGAGA............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................TGGCAGACACCCCGAGGCATTTGG................................ 24 0 2 0.50 1 0 0 1 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAG....................................................................... 24 0 13 0.46 6 6 0 0 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCA........................................................................ 23 0 13 0.38 5 5 0 0 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGC......................................................................... 22 0 13 0.38 5 4 0 0 0 0 1
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGC...................................................................... 25 0 13 0.31 4 2 0 0 0 2 0
...................................................................................................AATTCGAGTATTTGGCAATTACA................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0 0
...................................................................................................AATTCGAGTATTTGGCAATCACAA................................................................................................................................ 24 1 4 0.25 1 1 0 0 0 0 0
...................................................................................................AATTCGAGTATTTGGCAATCACAAACA............................................................................................................................. 27 1 4 0.25 1 1 0 0 0 0 0
...................................................................................................AATTCGAGTATTTGGCAATTACAAAC.............................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................GAAGAATGGTGATGAAGTAAAAGCG................................................................................................... 25 3 5 0.20 1 0 1 0 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGCGT.................................................................... 27 0 11 0.18 2 2 0 0 0 0 0
...............................................................................................................................GAAGGATGGAGGTCAAGTAAA....................................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0
...............................................................................................................................GAAGAATGGCGGTCAAGTAAA....................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGCA........................................................................ 22 0 13 0.15 2 2 0 0 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGC............................................................................. 18 0 13 0.15 2 2 0 0 0 0 0
.......................................................................................................................ACAAACAGGAAGAATGGAGGAG.............................................................................................................. 22 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................................................GCAAGCAGGAAGAATGGAGG................................................................................................................ 20 2 9 0.11 1 1 0 0 0 0 0
......................................................................................................................TACAAACAGGAAGAATGGAGG................................................................................................................ 21 0 9 0.11 1 1 0 0 0 0 0
....................CAGTTTGAAAGTTGAGCG..................................................................................................................................................................................................................... 18 0 9 0.11 1 1 0 0 0 0 0
........................................................................................................................................................GGTCTTTGAGAGGAGAACTAG.............................................................................. 21 0 10 0.10 1 1 0 0 0 0 0
..............................................................................................................................................................TGAGAGGAGAACTAGCCTGCAGCGT.................................................................... 25 0 11 0.09 1 1 0 0 0 0 0
...................................................................................................................................................................GGAGAACTAGCCTGCAGCGTTC.................................................................. 22 0 11 0.09 1 1 0 0 0 0 0
......................................................................................................................................GGAGGAGTAGTGAAAGCG................................................................................................... 18 2 12 0.08 1 0 1 0 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTG.......................................................................... 21 0 13 0.08 1 1 0 0 0 0 0
..............................................................................................................................................................TTTGAGGAGAACTAGCCTGCAGC...................................................................... 23 2 13 0.08 1 1 0 0 0 0 0
................................................................................................................................................................................................................GAGGCATTTGCCCCAGGGAG....................... 20 1 13 0.08 1 0 0 0 0 0 1
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGC......................................................................... 21 0 13 0.08 1 1 0 0 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGCCT........................................................................... 20 0 13 0.08 1 1 0 0 0 0 0
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGCG..................................................................... 26 0 13 0.08 1 1 0 0 0 0 0
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGCAGC...................................................................... 24 0 13 0.08 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TTTGGCCCTGGGAGCATTCA................. 20 3 19 0.05 1 0 1 0 0 0 0
...............................................................................................................................GAAGTATGGGGGTGAAGTA......................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CCCAACGGTCTAGCCGGTTGGTCAAACTTTCAACTCGCCGTTGGCCTTTTAGCGCGCCCGAGGTTTAAAATTTAAAATTTAAAGTTTAAAGTTTAAAGTTTAAGCTCATAAACCGTTAATGTTTGTCCTTCTTACCTCCTCTTCATTTTCGCCCAGAAACTCTCCTCTTGATCGGACGTCGCAAGGGGTGGTGTAACCGTCTGTGGGGCTCCGTAAACCGGGTCCCTCGTTCGTCAACTCTTCGGCCGGGT
***********************************************************************............................((((((((((....)))).....))))))..************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body
......GGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 24 0 9 22.00 198 187 0 9 2
.....CGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 25 0 9 10.78 97 95 2 0 0
.......GTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 23 0 9 9.44 85 80 4 1 0
....ACGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 26 0 9 3.00 27 27 0 0 0
.....................................................................................................AAGCTCATAAACCGTTAGTGTTTGTCCT.......................................................................................................................... 28 1 4 2.00 8 8 0 0 0
....................GTCAAACTTTCAACTCGCCGT.................................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0
.........CTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 21 0 9 1.89 17 15 2 0 0
........TCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 22 0 9 1.67 15 14 0 1 0
......................................................................................................AGCTCATAAACCGTTAGTGTTTGTCCT.......................................................................................................................... 27 1 7 1.57 11 11 0 0 0
......GGTCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 23 0 9 1.56 14 14 0 0 0
...AACGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 27 0 7 1.29 9 9 0 0 0
............................................................................................................................................CTTCATTTTCGCCCAGAAACTCTCCT..................................................................................... 26 0 1 1.00 1 1 0 0 0
......GGTCTAGCCGGTTGGGCAAACTTT............................................................................................................................................................................................................................. 24 1 9 1.00 9 9 0 0 0
................................................................................................................................................................................CGTCGCAAGGGGTGGTGTAACCGTCTGT............................................... 28 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................ACCGGGTCCCTCGTTCGTCAACTCT.......... 25 0 1 1.00 1 1 0 0 0
.........................................TGGCCTTTTAGCGCGCCCGAGGTT.......................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0
.....CGGTCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 24 0 9 0.89 8 8 0 0 0
.....................................................................................TTAAAGTTTAAAGTTTAAGCTCAT.............................................................................................................................................. 24 0 4 0.75 3 3 0 0 0
.......................................................................................................GCTCATAAACCGTTAGTGTTTGTCCT.......................................................................................................................... 26 1 7 0.57 4 4 0 0 0
.......GTCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 22 0 9 0.56 5 5 0 0 0
.....................................................................................................AAGCTCATAAACCGTTAATGTTTGTCCT.......................................................................................................................... 28 0 4 0.50 2 2 0 0 0
....................................................................................................TAAGCTCATAAACCGTTAGTGTTTGT............................................................................................................................. 26 1 4 0.50 2 2 0 0 0
.........CTAGCCGGTTGGTCAAACTTTCAACT........................................................................................................................................................................................................................ 26 0 9 0.33 3 3 0 0 0
....ACGGTCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 25 0 9 0.33 3 3 0 0 0
...AACGGTCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 26 0 7 0.29 2 2 0 0 0
.........................................................................................................TCATAAACCGTTAGTGTTTGTCCTTCTT...................................................................................................................... 28 1 7 0.29 2 2 0 0 0
......................................................................................................AGCTCATAAACCGTTAATGTTTGTCCT.......................................................................................................................... 27 0 7 0.29 2 2 0 0 0
......GGTCTAGCCGGTTGGACAAACTTT............................................................................................................................................................................................................................. 24 1 15 0.27 4 4 0 0 0
.....................................................................................................AAGCTCATAAACCGTTAGTGTTTGTC............................................................................................................................ 26 1 4 0.25 1 1 0 0 0
.....................................................................................................AAGCTCATAAACCGTTAGTGTTTGTCCTT......................................................................................................................... 29 1 4 0.25 1 1 0 0 0
.....................................................................................TTAAAGTTTAAACTTTAAGCTCAT.............................................................................................................................................. 24 1 4 0.25 1 1 0 0 0
.....................................................................................................AAGCTCATAAACCGTTAATGTTTGTC............................................................................................................................ 26 0 4 0.25 1 1 0 0 0
......................................................................................TAAAGTTTAAAGTTTAAGCTCAT.............................................................................................................................................. 23 0 4 0.25 1 1 0 0 0
....................................................................................................TAAGCTCATAAACCGTTAATGTTTGTCCT.......................................................................................................................... 29 0 4 0.25 1 1 0 0 0
..........................................................................................GTTTAAAGTTTAAGCTCAT.............................................................................................................................................. 19 0 4 0.25 1 1 0 0 0
...................................................................................................ATAAGCTCATAAACCGTTAGTGTTTGTC............................................................................................................................ 28 2 4 0.25 1 0 1 0 0
.....................................................................................TTAAAGTTTAAAGTTTAAGCTCATAA............................................................................................................................................ 26 0 4 0.25 1 1 0 0 0
........TCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 21 0 9 0.22 2 2 0 0 0
.......GTCTAGCCGGTTGGTCAAACT............................................................................................................................................................................................................................... 21 0 9 0.22 2 2 0 0 0
.....CGGTCTAGCCGGTTGGCCAAACTTT............................................................................................................................................................................................................................. 25 1 9 0.22 2 2 0 0 0
......GGTCTAGCCGGTTGTTCAAACTT.............................................................................................................................................................................................................................. 23 1 9 0.22 2 2 0 0 0
.....TGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 25 1 9 0.22 2 2 0 0 0
..............................................................................................................AACCGTTAGTGTTTGTCCTTCTTACCT.................................................................................................................. 27 1 10 0.20 2 2 0 0 0
........................................................................................................................................................CCAGAAACTCTCCTCTTGATCGGACGT........................................................................ 27 0 10 0.20 2 2 0 0 0
..........................................................................................................CATAAACCGTTAGTGTTTGTCCT.......................................................................................................................... 23 1 7 0.14 1 1 0 0 0
...AATGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 27 1 7 0.14 1 0 0 1 0
.............................................................................................................AAACCGTTAGTGTTTGTCCTTCTTACCT.................................................................................................................. 28 1 7 0.14 1 1 0 0 0
.........................................................................................................TCATAAACCGTTAATGTTTGT............................................................................................................................. 21 0 7 0.14 1 1 0 0 0
..........................................................................................................CATAAACCGTTAGTGTTTGTCCTTCT....................................................................................................................... 26 1 7 0.14 1 1 0 0 0
..AAACGGTCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 27 1 7 0.14 1 1 0 0 0
...........................................................................................................AAAAACCGTTAGTGTTTGTCCTTCT....................................................................................................................... 25 2 7 0.14 1 1 0 0 0
........................................................................................................CTCATAAACCGTTAGTGTTTGTCCT.......................................................................................................................... 25 1 7 0.14 1 1 0 0 0
..CAACGGTCTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 27 0 7 0.14 1 1 0 0 0
.........................................................................................................TCATAAACCGTTAGTGTTTGTCCT.......................................................................................................................... 24 1 7 0.14 1 1 0 0 0
...AACGGTCTAGCCGGTTGGCCAAACTTT............................................................................................................................................................................................................................. 27 1 7 0.14 1 1 0 0 0
..................................................................................................................GTTAATGTTTGTCCTTCTTACCT.................................................................................................................. 23 0 7 0.14 1 1 0 0 0
.......................................................................................................GCTCATAAACCGTTAGTTTTTGTCCT.......................................................................................................................... 26 2 7 0.14 1 1 0 0 0
.......................................................................................................GCTCATAAACCGTTAGTGTTTGTCC........................................................................................................................... 25 1 7 0.14 1 1 0 0 0
.............................................................................................................AAACCGTTAATGTTTGTCC........................................................................................................................... 19 0 7 0.14 1 1 0 0 0
...AAAGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 27 1 7 0.14 1 1 0 0 0
...........................................................................................................ATAAACCGTTAGTGTTTGTCCTTCT....................................................................................................................... 25 1 7 0.14 1 1 0 0 0
..............................................................................................................................................TCTTTTTCGCCCAGAAACTCTCCT..................................................................................... 24 1 7 0.14 1 0 0 1 0
....ACGGTCTAGCCGGTTGGACAAACTTT............................................................................................................................................................................................................................. 26 1 15 0.13 2 2 0 0 0
..........TAGCCGGTTGGACAAACTTT............................................................................................................................................................................................................................. 20 1 15 0.13 2 2 0 0 0
......GGTCTAGCCGGTTGCTCAAACTTT............................................................................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0
..ATACGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 28 2 9 0.11 1 1 0 0 0
......GGTCTAGCCGGTTGGTCAAACT............................................................................................................................................................................................................................... 22 0 9 0.11 1 1 0 0 0
........TCTAGCCGGTTGGGCAAACTTT............................................................................................................................................................................................................................. 22 1 9 0.11 1 1 0 0 0
.....CGGTCTAGCCGGTTGGTCAAACT............................................................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0
......TGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0
.....CGGTCTAGCCGGTTGGGCAAACTTT............................................................................................................................................................................................................................. 25 1 9 0.11 1 1 0 0 0
......CGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 24 1 9 0.11 1 0 1 0 0
......GGTCTAGCCGGGTGGGCAAACTTT............................................................................................................................................................................................................................. 24 2 9 0.11 1 1 0 0 0
.......TTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 23 1 9 0.11 1 0 0 1 0
..........TAGCCGGTTGGGCAAACTTT............................................................................................................................................................................................................................. 20 1 9 0.11 1 1 0 0 0
.....CGGTCTAGCCGGTTGGTCAAACTTTC............................................................................................................................................................................................................................ 26 0 9 0.11 1 1 0 0 0
.......GTCTAGCCGGTCGGTCAAACTTT............................................................................................................................................................................................................................. 23 1 9 0.11 1 1 0 0 0
.........ATAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 21 1 9 0.11 1 1 0 0 0
........ACTTGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 22 2 9 0.11 1 1 0 0 0
......GGTCTAGCCAGTTGGTCAAACTTT............................................................................................................................................................................................................................. 24 1 9 0.11 1 0 0 0 1
......GGTCTAGCCGGTTGGTCAAACTTTA............................................................................................................................................................................................................................ 25 1 9 0.11 1 1 0 0 0
..TTACGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 28 2 9 0.11 1 1 0 0 0
......GGTCTAGCCGGTAGGTCAAACTTT............................................................................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0
.......ATCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 23 1 9 0.11 1 1 0 0 0
.....CGGTCTAGCCGGTTGGTCAAACTTTT............................................................................................................................................................................................................................ 26 1 9 0.11 1 1 0 0 0
......GGTCTAGCCGTTTGGTCAAACTTT............................................................................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0
.......GTCTAGCCGGTTGGGCAAACTTT............................................................................................................................................................................................................................. 23 1 9 0.11 1 1 0 0 0
..TTACGGTCTAGCCGGTTGGGCAAACTTT............................................................................................................................................................................................................................. 28 3 9 0.11 1 1 0 0 0
......GGTCTAGCCGGTTGGCCAAACTTT............................................................................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0
.........CTAGCCGGTTGGTCAAACTT.............................................................................................................................................................................................................................. 20 0 9 0.11 1 1 0 0 0
.....AGGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 25 1 9 0.11 1 1 0 0 0
.........CTAGCCGGTTGGTCAAACTTTC............................................................................................................................................................................................................................ 22 0 9 0.11 1 0 1 0 0
....AACGTCTAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 26 2 9 0.11 1 1 0 0 0
..........TAGCCGGTTGGTCAAACTTT............................................................................................................................................................................................................................. 20 0 9 0.11 1 1 0 0 0
................................................................................................................CCGTTAGTGTTTGTCCTTCTTACCT.................................................................................................................. 25 1 10 0.10 1 1 0 0 0
..................................................................................................................................................TTTCGCCCAGAAACTCTCCTCTTGAT............................................................................... 26 0 10 0.10 1 1 0 0 0
........................................................................................................................................................................TGATCGGACGTCGCAAGGGGT.............................................................. 21 0 10 0.10 1 1 0 0 0
........................................................................................................................................................................TGATCGGACGTCGCAAGGGGTGGTGT......................................................... 26 0 10 0.10 1 1 0 0 0
...............................................................................................................ACCGTTAGTGTTTGTCCT.......................................................................................................................... 18 1 10 0.10 1 1 0 0 0
...................................................................................................................................................................................................................CGTAAACCGGGTCCCTCGT..................... 19 0 13 0.08 1 1 0 0 0
..........................................................................................................................................................AAAAACTCTCCTCTTGATCGGACGT........................................................................ 25 1 13 0.08 1 1 0 0 0
............................................................................................................................................................................................................GGGGCTCCGTAAACCGGGTCCCTCG...................... 25 0 13 0.08 1 1 0 0 0
...AACGGTCTAGCCGGTTGGACAAACTTT............................................................................................................................................................................................................................. 27 1 13 0.08 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_464:8347-8597 + dpe_1712 GGGTTGCCAGATCGGCCAACCAGTTTGAAAGTTGAGCGGCAACCGGAAAATCGCGCGGGCTCCAAATTTTAAATTTTAAATTTCAAATTTCAAATTTCAAATTCGAGTATTTGGCAATTACAAACAGGAAGAATGGAGGAGAAGTAAAAGCGGGTCTTTGAGAGGAGAACTAGCCTGCAGCGTTCCCCACCACATTGGCAGACACCCCGAGGCATTTGGCCCAGGGAGCAAGCAGTTGAGAAGCCGGCCCA
dp5 Unknown_group_2:66974-67223 + GGGTTGCCAGATCGGCCAACCAGTTTGAAAGTTGAGCGCCAACCGGAAAATCGCGCGGGCCCCAAATTTTAAATTTTAAATTTCAAATTTCAAATTTCAAAT-CGAGTATTTGGCAAGTACAAACAGGAAGAATGGAGGAGGAGGAAAAGCGGGTCTTTGAGAGGAGAACTAGCCTGCAGCGTTCCCCACCACAGTGGCAGACGCCCCGAGGCATTTGGCCCAGGGAGCAGGCAGTTGAGAAGCCGGCCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GGGTTGCCAGATCGGCCAACCAGTTTGAAAGTTGAGCGGCAACCGGAAAATCGCGCGGGCTCCAAATTTTAAATTTTAAATTTCAAATTTCAAATTTCAAATTCGAGTATTTGGCAATTACAAACAGGAAGAATGGAGGAGAAGTAAAAGCGGGTCTTTGAGAGGAGAACTAGCCTGCAGCGTTCCCCACCACATTGGCAGACACCCCGAGGCATTTGGCCCAGGGAGCAAGCAGTTGAGAAGCCGGCCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................CAGTTTGAAAGTTGAGCGGCAACC...............................................................................................................................................................................................................2412.002020000
....................CAGTTTGAAAGTTGAGCGGCAAC................................................................................................................................................................................................................2312.002020000
....................CAGTTTGAAAGTTGAGCGGCAACCGG.............................................................................................................................................................................................................2611.001010000
.........................................................................................................................AAACAGGAAGAATGGAGGAGA.............................................................................................................2111.001010000
...................................................................................................................................................................................................TGGCAGACACCCCGAGGCATTTGG................................2420.501001000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAG.......................................................................24130.466060000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCA........................................................................23130.385050000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGC.........................................................................22130.385040001
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGC......................................................................25130.314220000
...................................................................................................AATTCGAGTATTTGGCAATTACA.................................................................................................................................2340.251010000
...................................................................................................AATTCGAGTATTTGGCAATTACAAAC..............................................................................................................................2640.251010000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGCGT....................................................................27110.182020000
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGCA........................................................................22130.152020000
............................................................................................................................................................TTTGAGAGGAGAACTAGC.............................................................................18130.152020000
.......................................................................................................................ACAAACAGGAAGAATGGAGGAG..............................................................................................................2270.141010000
......................................................................................................................TACAAACAGGAAGAATGGAGG................................................................................................................2190.111010000
....................CAGTTTGAAAGTTGAGCG.....................................................................................................................................................................................................................1890.111010000
........................................................................................................................................................GGTCTTTGAGAGGAGAACTAG..............................................................................21100.101010000
..............................................................................................................................................................TGAGAGGAGAACTAGCCTGCAGCGT....................................................................25110.091010000
...................................................................................................................................................................GGAGAACTAGCCTGCAGCGTTC..................................................................22110.091010000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTG..........................................................................21130.081010000
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGC.........................................................................21130.081010000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCT...........................................................................20130.081010000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGCG.....................................................................26130.081010000
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGCAGC......................................................................24130.081010000
dp5
GGGTTGCCAGATCGGCCAACCAGTTTGAAAGTTGAGCGCCAACCGGAAAATCGCGCGGGCCCCAAATTTTAAATTTTAAATTTCAAATTTCAAATTTCAAAT-CGAGTATTTGGCAAGTACAAACAGGAAGAATGGAGGAGGAGGAAAAGCGGGTCTTTGAGAGGAGAACTAGCCTGCAGCGTTCCCCACCACAGTGGCAGACGCCCCGAGGCATTTGGCCCAGGGAGCAGGCAGTTGAGAAGCCGGCCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTG..........................................................................24626.17157015700000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCT...........................................................................23624.00144213520005000
.......................................CAACCGGAAAATCGCGCGGGC...............................................................................................................................................................................................21515.007507310100000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGC.............................................................................21614.678807750600000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTGC.........................................................................25610.836506500000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCC............................................................................22610.506306110001000
.......................................CAACCGGAAAATCGCGCGGGCCC.............................................................................................................................................................................................2359.004504311000000
.......................................CAACCGGAAAATCGCGCGGGCC..............................................................................................................................................................................................2257.603803710000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTGCAG.......................................................................2765.833503200000300
....................................................................................................................AGTACAAACAGGAAGAATGGAGG................................................................................................................2353.601801500002100
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTGCA........................................................................2663.171901800100000
.......................................CAACCGGAAAATCGCGCGG.................................................................................................................................................................................................1953.001501500000000
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGCCT...........................................................................2262.671601600000000
.......................................CAACCGGAAAATCGCGCGGG................................................................................................................................................................................................2052.601301300000000
.......................................CAACCGGAAAATCGCGCGGGCCCC............................................................................................................................................................................................2452.40120910000200
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGCCTG..........................................................................2361.5090900000000
....................................................................................................................AGTACAAACAGGAAGAATGGAGGA...............................................................................................................2451.4070610000000
......................................CCAACCGGAAAATCGCGCGGGCC..............................................................................................................................................................................................2351.2060600000000
......................................CCAACCGGAAAATCGCGCGGGC...............................................................................................................................................................................................2251.2060500010000
......................................CCAACCGGAAAATCGCGCGGGCCC.............................................................................................................................................................................................2451.2060600000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAG..............................................................................2061.1770700000000
....................CAGTTTGAAAGTTGAGCGCCAACC...............................................................................................................................................................................................................2461.0060000000600
.......................................................................................................................................................................................................................TTGGCCCAGGGAGCAGGCAGTTGAGA..........2641.0040000000400
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGCCTGCAG.......................................................................2661.0060300000300
........................................AACCGGAAAATCGCGCGGGCC..............................................................................................................................................................................................2151.0050500000000
.......................................................................................................................................................................................TCCCCACCACAGTGGCAGACGCCC............................................2470.8660600000000
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGC.............................................................................2060.8350500000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTGCAGC......................................................................2860.8350400001000
........................................AACCGGAAAATCGCGCGGGCCC.............................................................................................................................................................................................2250.8040400000000
........................................AACCGGAAAATCGCGCGGGC...............................................................................................................................................................................................2050.8040400000000
....................................................................................................................AGTACAAACAGGAAGAATGGAG.................................................................................................................2250.6030300000000
....................................................................................................................AGTACAAACAGGAAGAATGGAGGAG..............................................................................................................2550.6030200010000
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGCC............................................................................2160.5030300000000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGC......................................................................2560.5030000000300
.........................................................................................................................................................GTCTTTGAGAGGAGAACTA...............................................................................1960.5030210000000
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGCCTGC.........................................................................2460.5030300000000
.......................................................................................................................................................................................TCCCCACCACAGTGGCAGACGC..............................................2270.4330300000000
...................................................................................................................................................................................................TGGCAGACGCCCCGAGGCATTTGG................................2470.4330210000000
........................................................................................................................................................................................CCCCACCACAGTGGCAGACGCCC............................................2370.4330300000000
.......................................CAACCGGAAAATCGCGCGGGCCCCA...........................................................................................................................................................................................2550.4020200000000
..........................................................................................CAAATTTCAAAT-CGAGTATTTGGCAA......................................................................................................................................2650.4020000000200
......................................CCAACCGGAAAATCGCGCGGG................................................................................................................................................................................................2150.4020200000000
.......................................CAACCGGAAAATCGCGCGGGCCCCAA..........................................................................................................................................................................................2650.4020200000000
......................................CCAACCGGAAAATCGCGCGG.................................................................................................................................................................................................2050.4020200000000
.......................................CAACCGGAAAATCGCGCGGGCCCCAAA.........................................................................................................................................................................................2750.4020200000000
......................................CCAACCGGAAAATCGCGCGGGCCCC............................................................................................................................................................................................2550.4020200000000
.....................................................................................................................GTACAAACAGGAAGAATGGAGGA...............................................................................................................2350.4020200000000
........................................AACCGGAAAATCGCGCGG.................................................................................................................................................................................................1850.4020200000000
.....................................................................................................................GTACAAACAGGAAGAATGGAGG................................................................................................................2250.4020200000000
.........................TGAAAGTTGAGCGCCAACCGGAAAAT........................................................................................................................................................................................................2660.3320110000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTT..........................................................................2460.3320200000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTGCAA.......................................................................2760.3320200000000
...........................................................................................................................................................CTTTGAGAGGAGAACTAGCC............................................................................2060.3320200000000
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGCCTGCAGC......................................................................2760.3320200000000
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGC.........................................................................2160.3320200000000
.......................................................................................................................ACAAACAGGAAGAATGGAGGAGG.............................................................................................................2370.2920100100000
........................................................................................................................................................................................................................TGGCCCAGGGAGCAGGCAG................1970.2920110000000
................................................................................................................................................................................................................GAGGCATTTGGCCCAGGGAGCAGG...................2470.2920200000000
..........................................................................................................................AACAGGAAGAATGGAGGAGGA............................................................................................................2170.2920000000200
.......................................................................................................................................................................................TCCCCACCACAGTGGCAGACGCC.............................................2370.2920200000000
..........................................................................................................................AACAGGAAGAATGGAGGAGGAG...........................................................................................................2270.2920200000000
.......................................................................................................................................GAGGAGGAGGAAAAGCGG..................................................................................................1870.2920200000000
.......................................................................................................................................................................................TCCCCACCACAGTGGCAGACG...............................................2170.2920200000000
......................................................................................................................................................................................................................TTTGGCCCAGGGAGCAGGCAGTT..............2340.2510100000000
........................................................................................................................................................................................................................................CAGTTGAGAAGCCGGCCCA1940.2510100000000
......................................................................................................................................................................................................................TTTGGCCCAGGGAGCAGGCAGTTGA............2540.2510000000100
........................................AACCGGAAAATCGCGCGGG................................................................................................................................................................................................1950.2010100000000
....................................................................................................................AGTACAAACAGGAAGAATGGA..................................................................................................................2150.2010100000000
....................................................................................................................AGTACAAACAGGAAGAATGGAGA................................................................................................................2350.2010100000000
.............................................................................................................................................................TTGAGAGGAGAACTAGCCTGCAGCGTT...................................................................2750.2010100000000
.......................................CAACCGGAAAATCGCGCGGGCG..............................................................................................................................................................................................2250.2010100000000
.......................................CAACCGGAAAATCGCGCGGAA...............................................................................................................................................................................................2150.2010100000000
....................................................................................................................AGTACAAACAGGAAGAATGGAGGAGGA............................................................................................................2750.2010100000000
.........................................ACCGGAAAATCGCGCGGGCCC.............................................................................................................................................................................................2150.2010100000000
................................TGAGCGCCAACCGGAAAATCGCGCGGGC...............................................................................................................................................................................................2850.2010100000000
...............................................................................................TTCAAAT-CGAGTATTTGGC........................................................................................................................................1950.2010100000000
.....................................................................................................................GTACAAACAGGAAGAATGGAG.................................................................................................................2150.2010100000000
......................................CCAACCGGAAAATCGCGCG..................................................................................................................................................................................................1950.2010100000000
..........................................CCGGAAAATCGCGCGGGC...............................................................................................................................................................................................1850.2010100000000
...................................................................................................................AAGTACAAACAGGAAGAATGGAGGA...............................................................................................................2550.2010100000000
.......................................CAACCGGAAAATCGCGCGGGT...............................................................................................................................................................................................2150.2010100000000
.......................................CAACCGGAAAATCGCGCGGGCCA.............................................................................................................................................................................................2350.2010100000000
....................................................................................................................AGTACAAACAGGAAGAATG....................................................................................................................1950.2010100000000
.......................................CAACCGGAAAATCGCGCGC.................................................................................................................................................................................................1950.2010100000000
.......................................CAACCGGAAAATCGCGCG..................................................................................................................................................................................................1850.2010100000000
........................................AACCGGAAAATCGCGCGGGCCT.............................................................................................................................................................................................2250.2010100000000
...................................................................................................................AAGTACAAACAGGAAGAATGGAGG................................................................................................................2450.2010100000000
......................................................................................................................................................................................................................TTTGGCCCAGGGAGCAGGCAGTA..............2350.2010010000000
...........................................................................................................................................................CTTTGAGAGGAGAACTAGCCT...........................................................................2160.1710100000000
...............................................................................................................................................................................TGCAGCGTTCCCCACCACAGTGGCAGA.................................................2760.1710100000000
................................................................................................................................................GAAAAGCGGGTCTTTGAGAGGAGAAC.................................................................................2660.1710100000000
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGAAA...........................................................................2260.1710100000000
......................................................................................................................................................................................TTCCCCACCACAGTGGCAGACG...............................................2260.1710100000000
................................................................................................................................................................................GCAGCGTTCCCCACCACAGTGGCAGACG...............................................2860.1710100000000
......................................................................................................................................................CGGGTCTTTGAGAGGAGAACTAGCC............................................................................2560.1710100000000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGC.........................................................................2260.1710100000000
..........................GAAAGTTGAGCGCCAACCGGAAAA.........................................................................................................................................................................................................2460.1710100000000
....................................................................................................................................................AGCGGGTCTTTGAGAGGAGAACTAG..............................................................................2560.1710100000000
............................................................................................................................................................TTTGAGAGGAGAACTAGCCTGCAGCG.....................................................................2660.1710100000000
.........................TGAAAGTTGAGCGCCAACCG..............................................................................................................................................................................................................2060.1710100000000
......................................................................................................................................................................................TTCCCCACCACAGTGGCAGACGCC.............................................2460.1710100000000
......................................................................................................................................................................................TTCCCCACCACAGTGGCAGACGCCC............................................2560.1710100000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTGT.........................................................................2560.1710100000000
.......................................................................................................................................................GGGTCTTTGAGAGGAGAACTAGCC............................................................................2460.1710100000000
..........................................................................................................................................................................TAGCCTGCAGCGTTCCCCA..............................................................1960.1710100000000
..........................................................................................................................................................TCTTTGAGAGGAGAACTAGCCTGCA........................................................................2560.1710100000000
......................................................................................................................................................................................TTCCCCACCACAGTGGCAGAC................................................2160.1710100000000
.........................TGAAAGTTGAGCGCCAACCGGAAAA.........................................................................................................................................................................................................2560.1710100000000
..............................................................................................................................................................TGAGAGGAGAACTAGCCTGCAA.......................................................................2260.1710100000000
.....GCCAGATCGGCCAACCAGTTTGAAAGT...........................................................................................................................................................................................................................2760.1710100000000
..............................................................................................................................................................TGAGAGGAGAACTAGCCTGCAG.......................................................................2260.1710100000000
.........................................................................................................................................................GTCTTTGAGAGGAGAACTAGCCTA..........................................................................2460.1710100000000
................CAACCAGTTTGAAAGTTGAGCGC....................................................................................................................................................................................................................2360.1710100000000
..................ACCAGTTTGAAAGTTGAGCGC....................................................................................................................................................................................................................2160.1710100000000
.................AACCAGTTTGAAAGTTGAGCGC....................................................................................................................................................................................................................2260.1710000001000
........................TTGAAAGTTGAGCGCCAACC...............................................................................................................................................................................................................2060.1710100000000
....................................................................................................................................................................................................GGCAGACGCCCCGAGGCATTTG.................................2270.1410100000000
.......................................................................................................................ACAAACAGGAAGAATGGAGGAG..............................................................................................................2270.1410100000000
.......................................................................................................................ACAAACAGGAAGAATGGAGG................................................................................................................2070.1410100000000
..................................................................................................................................................................................................................GGCATTTGGCCCAGGGAGCA.....................2070.1410100000000
..................................................................................................................................................................................................................GGCATTTGGCCCAGGGAGCAGGCA.................2470.1410100000000
.......................................................................................................................................................................................TCCCCACCACAGTGGCAGACGCCT............................................2470.1410100000000
...........................................................................................................................ACAGGAAGAATGGAGGAGGAGG..........................................................................................................2270.1410100000000
...............................................................................................................................................................................................................CGAGGCATTTGGCCCAGGGAGCA.....................2370.1410100000000
...........................................................................................................................ACAGGAAGAATGGAGGAGGAGGAAA.......................................................................................................2570.1410100000000
.......................................................................................................................................................................................TCCCCACCACAGTGGCAGACGCCCCGA.........................................2770.1410100000000
...................................................................................................................................................................................................TGGCAGACGCCCCGAGGCATTTG.................................2370.1410100000000
......................................................................................................................................................................................................................TTTGGCCCAGGGAGCAGGCA.................2070.1410100000000
...............................................................................................................................................................................................................CGAGGCATTTGGCCCAGGGAGCAGGC..................2670.1410100000000
..............................................................................................................................................................................................CACAGTGGCAGACGCCCCGAGGCATT...................................2670.1410100000000
................................................................................................................................................................................................................GAGGCATTTGGCCCAGGGAGCAGGC..................2570.1410100000000
......................................................................................................................................................................................................................TTTGGCCCAGGGAGCAGGCAG................2170.1410100000000
......................................................................................................................................................................................................................TTTGGCCCAGGGAGCAGGCAA................2170.1410100000000
............................................................................................................................................................................................ACCACAGTGGCAGACGCCCCGAG........................................2370.1410100000000
..............................................................................................................................................................................................CACAGTGGCAGACGCCCCGAGGCAT....................................2570.1410100000000
...............................................................................................................................................................................................................CGAGGCATTTGGCCCAGGGAGCAGG...................2570.1410100000000
.......................................................................................................................................................................................................................TTGGCCCAGGGAGCAGGCAG................2070.1410100000000
......................................................................................................................................................................................................CAGACGCCCCGAGGCATTTGGCCCAG...........................2670.1410010000000
.........................................................................................................................AAACAGGAAGAATGGAGGAGGAGG..........................................................................................................2470.1410100000000
...........................................................................................................................................................................................CACCACAGTGGCAGACGCCC............................................2080.1310100000000
..................................................................................................................................................................................................GTGGCAGACGCCCCGAGGCATTTGGA...............................2680.1310100000000
............................................................................................................................................................................................ACCACAGTGGCAGACGCCCCG..........................................2180.1310100000000

Generated: 06/08/2015 at 04:34 PM