dpe_1699

CDS [Dper\GL25419-cds]; CDS [Dper\GL25419-cds]; exon [dper_GLEANR_7911:5]; exon [dper_GLEANR_7911:6]; intron [Dper\GL25419-in]

##################################################--------------------------------------------------------------------------################################################## CGCCGCCGATGTTCATACGTGACGATGAGCCTGCGGGAGGAGCGAGGCGGGTGAGTGGGGTGGGATGGGATGGGATGTCCTCTATCTGCCACCAGACACGTGACAAAGTCCATGTGTATCGTAGGGAATTCCCATTAAGGACAACGATAGCTTGTCGGCCATGCTGGCCGCCGA ************************************************.....((.((((.....((((....((((.....((((....)))).....))))..)))).....)))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M021 embryo	M042 female body	V057 head	V050 head	V042 embryo
.......................................................TGGGGTGGGATGGGATGGG....................................................................................................	19	0	2	25.50	51	36	0	7	7	1	0
.......................................................TGGGGTGGGATGGGATGGGA...................................................................................................	20	0	2	10.50	21	19	0	2	0	0	0
......................................................GTGGGGTGGGATGGGATGGGA...................................................................................................	21	0	1	7.00	7	7	0	0	0	0	0
......................................................GTGGGGTGGGATGGGATGGG....................................................................................................	20	0	1	6.00	6	6	0	0	0	0	0
..............................................................................................................................................AACGATAGCTTGTCGGCC..............	18	0	1	4.00	4	0	4	0	0	0	0
........................................................GGGGTGGGATGGGATGGGA...................................................................................................	19	0	2	3.50	7	6	0	1	0	0	0
.......................................................TGGGGTGGGATGGGATGGGATG.................................................................................................	22	0	2	2.00	4	4	0	0	0	0	0
..................................................GTGAGTGGGGTGGGATGGGATCC.....................................................................................................	23	2	1	2.00	2	2	0	0	0	0	0
........................................................GGGGTGGGATGGGATGGG....................................................................................................	18	0	2	1.50	3	2	0	0	1	0	0
..............ATACGTGACGATGAGCCTGTGG..........................................................................................................................................	22	1	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................CAACGATAGCTTGTCGGC...............	18	0	1	1.00	1	0	1	0	0	0	0
.......................................................TGGGGTGGGATGGGATGG.....................................................................................................	18	0	2	1.00	2	2	0	0	0	0	0
.............CATACGTGACGATGAGCCTGCGG..........................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................ACAACGATAGCTTGTCGGA...............	19	1	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................CGGGGAATTCCCATTAAGGAC................................	21	2	1	1.00	1	0	1	0	0	0	0
.......GATGTTCATACGTGACGATGAGCCT..............................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................ATAGCTTGTCGGCCATGC..........	18	0	1	1.00	1	0	1	0	0	0	0
........................................................................................................................GCGGGGAATTCCCATTAAGGAC................................	22	2	1	1.00	1	0	1	0	0	0	0
..............ATACGTGACGATGAGCCTGCGGGA........................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0
..................................................GTGAGTGGGGTGGGATGGGA........................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................CAACGATAGCTTGTCGGCC..............	19	0	1	1.00	1	0	1	0	0	0	0
....................GACGATGAGCCTGCGGGAGGAG....................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................CCCATTAAGGACAACGATAG........................	20	0	1	1.00	1	0	0	1	0	0	0
........................................................GGGGTGGGATGGGATGGGAT..................................................................................................	20	0	2	0.50	1	1	0	0	0	0	0
......................................................GTGGGGTGGGATTGGATGGGA...................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0
........................................................GGGGTGGGATGGGATGGGATT.................................................................................................	21	1	7	0.29	2	2	0	0	0	0	0
.......................................................TGGGGTGGGATGGGATGGGATT.................................................................................................	22	1	4	0.25	1	1	0	0	0	0	0
.....................................AGGAGAGAGGCGTGTGAGAGGGG..................................................................................................................	23	3	5	0.20	1	0	0	0	0	0	1
......................CGATGACCCTGAGGGTGGAG....................................................................................................................................	20	3	9	0.11	1	0	0	0	1	0	0
........................................................GGGGTGGGATGGGATGGGAA..................................................................................................	20	1	13	0.08	1	1	0	0	0	0	0
.......................GGTGAGCCTGCGGACGGAGC...................................................................................................................................	20	3	16	0.06	1	0	0	0	0	0	1
............................................................................................................................GGAATTCCCAGTAAGAGCAA..............................	20	3	19	0.05	1	0	0	0	0	0	1
.......................................................TGGGGTGGGATGGGATGGT....................................................................................................	19	1	20	0.05	1	1	0	0	0	0	0

GCGGCGGCTACAAGTATGCACTGCTACTCGGACGCCCTCCTCGCTCCGCCCACTCACCCCACCCTACCCTACCCTACAGGAGATAGACGGTGGTCTGTGCACTGTTTCAGGTACACATAGCATCCCTTAAGGGTAATTCCTGTTGCTATCGAACAGCCGGTACGACCGGCGGCT ************************************************.....((.((((.....((((....((((.....((((....)))).....))))..)))).....)))).)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body
.......................................................................................CCGTGGTCTGCGCACTGCT....................................................................	19	3	13	0.15	2	2

Species	Coordinate	ID	Alignment
droPer2	scaffold_45:440742-440915 -	dpe_1699	CGCCGCCGATGTTCATACGTGACGATGAGCCTGCGGGAGGAGCGAGGCGGGTGAGTGGG-GT------------------G---GGATGGGATGGGATGTCCTCT----ATC------------------TGCCAC--CAG--------ACACGTGACAA---------------------------------------------------------------------AGTC-CATGTGTATCGTAGGGAATTCCCATTAAGGACAACGATAGCTTGTCGGCCATGCTGGCCGCCGA
dp5	XR_group8:6043241-6043414 +	dps_3340	CGCCGCCGATGTTCATACGTGACGATGAGCCTGCGGGAGGAGCGAGGCGGGTGAGTGGG-GT------------------G---GGATGGGATGGGATGTCCTCT----ATC------------------TGCCAC--CAG--------ACACGTGACAA---------------------------------------------------------------------AGTC-CATGTGTATCGTAGGGAATTCCCATTAAGGACAACGATAGCTTGTCGGCCATGCTGGCCGCCGA
droWil2	scf2_1100000004762:1847012-1847220 -		CGCCACCAATGTTTATACGTGACGATGAGCCAGCCGGTGGTGCGAGAAGGGTAAGTACA--T------------------G----AAGGTG-----TTCTT--------ATC--------------TA--TGCCA---TAG--------ACACGTGACTGGA--GAC----AACTATTTCCTCTGCATCTCTCTC-----TCTCTCTCTCTCTCTCTCTC----------TTT-CTT---TGTCTTAGGGTATACCCATTAAGGACAACGACAGTTTGTCGGCCATGTTGGCCGCTGA
droVir3	scaffold_13049:20936813-20936985 +		CCCCGCCAATGTTTATACGTGACGATGAGCCCGCCGGTGGTGCCAGAAAGGTGCGTATTCA-A---------------------TCACTTCATTCCGAACC----------------------------------------------------------ATCTCGAC----TGA-----------GA----TCTT-----TCACTC-TCCCC---C-------------GCTC-TCT---GTTTGCAGGGCATTCCCATTAAGGACAATGACAGTTTGTCGGCCATGTTGGCCGCTGA
droMoj3	scaffold_6680:15289925-15290122 +		CTCCGCCGATGTTTATACGTGACGACGAGCCGGCTGGCGGTGCCAGAAAGGTGGGTACTCG-A--------------------------------------------------------------ACACA-C--CACAAAG--------TCACGTGGCTAAACAG------CACTCTCTCT----CACTCCT--C-------TCTCTCTCTCTCTCTCTCTATCTCTGTTGTC-------TTCTACAGGGCATACCCATTAAGGACAACGACAGCTTGTCGGCCATGCTAGCCGCTGA
droGri2	scaffold_15110:22762701-22762898 -		CCCCACCCATGTTTATACGTGACGATGAGCCAGCCGGAGGCGCACGAAAGGTAAGCACCCA-TACCCACCCCGGGACAATGTA-A------------------CC----ACCTCTGTGTGCAGGCCCACA----------ATAATGTG----------------------------------------------------GCCCTGTGCCCCTGTGCCTC----------TGT-GTC---TGTTGCAGGGCATACCCATTAAAGACAACGACAGTCTGTCGGCCATGCTTGCCGCTGA
droAna3	scaffold_13337:21103697-21103859 +		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGGGCCAGGCGGGTAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCAGGTGAA---GCAGC------------------CGCTGACT-----C-TACCA-----------------CATCCTTC---CCCTTCAGGGCATTCCTATTAAGGACAACGACAGCTTATCGGCCATGCTGGCTGCCGA
droBip1	scf7180000396707:326502-326665 -		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGGGCTAGGCGGGTAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCAGGTGAACACGGAGC------------------CACTGACT-----C---CCA-----------------CCTCCTTC---CCCTCTAGGGCATTCCCATTAAGGACAACGACAGCTTATCGGCCATGCTGGCCGCCGA
droKik1	scf7180000302441:2093041-2093212 -		CACCGCCAATGTTTATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTAAGTGCCGG-A---------------------GCCAAGGATTCCGGATT----GCCTATC------------------TCTGGC--CAG--------GCACGTGACCA---------------------------------------------------------------------GGTCTCTT---CTTTCCAGGGCATACCCATTAAGGACAACGACAGCCTGTCGGCCATGCTGGCCGCCGA
droFic1	scf7180000453945:126432-126598 +		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGCGCCAGGCGGGTAAGTAGG-GC------------------T---TAAGGGG--------C--TCC----ACC---------------TC-CC--CGCGTAG--------TCACGTGACCGGGCTG-----------------------------------------------------------------CTC-CTC---CGTTGTAGGGAATCCCCATCAAGGACAACGACAGCCTGTCCGCCATGCTGGCCGCCGA
droEle1	scf7180000491199:864715-864874 -		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCAAGGAGGGTGAGTTCG-AC----------------------------------------CATCCCTGCC------------------T-------CTG--------GCACGTGACCAGGTTGAC--------------------------------T-----------------------------TATCCTTC---TCGTCCAGGGCATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA
droRho1	scf7180000759602:19100-19266 +		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGCGCCAGGAGGGTGAGTTGG-AT------------------T------------------------CCCAGCC------------------T-------CTG--------GCACGTGACCAGGTTGAC----TGC---------------------------------CCCCA---TTC-----------CCTC-CAT---TTGTCCAGGGCATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA
droBia1	scf7180000302377:1314000-1314156 -		CCCCGCCGATGTTCATACGTGACGACGAGCCGGCCGGCGGGGCAAGGAGGGTGAGTTGG-TT------------------GCA-G----------------CTAT----ACC------------------TGTGGG--CTG--------ATACGTGACCA---------------------------------------------------------------------GGTC-CTT---TGTTCCAGGGCATTCCCATTAAGGACAACGACAGTTTGTCCGCCATGCTGGCCGCCGA
droTak1	scf7180000414002:118225-118385 +		CCCCGCCGATGTTCATACGTGACGATGAGCCAGCCGGCGGTGCCAGGAGGGTGAGTTGG-AA------------------ACGCGGA------------TT----GCCTGGC------------------T-TGGG--CCC--------ATACGTGACCA---------------------------------------------------------------------GGTC-CTT---CGTTCCAGGGCATTCCCATTAAGGACAACGACAGTTTGTCCGCCATGCTGGCCGCCGA
droEug1	scf7180000409472:805669-805830 +		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGTGCCAGGAGGGTGAGTGGG-AT------------------ACATGGA------------TT----CCCTGCC------------------TCTAAG--CCG--------ACACGTGACCA---------------------------------------------------------------------GGTA-TTT---TGTTCCAGGGCATTCCCATTAAGGACAACGACAGTTTGTCTGCCATGCTGGCCGCCGA
dm3	chr3L:21970186-21970342 +		CCCCGCCAATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCCGGAGGGTGAGTTTA-AT------------------T---------------------------------------CTGGAGTGCG----------GGGATGCC----------------------------------------------------GTCGTGTGACCA-----------------GGTC-TTT---TGTTCTAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA
droSim2	3l:21485379-21485535 +		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AT------------------G---------------------------------------CTGGAGTGCG----------GGGATGCC----------------------------------------------------GTCGTGTGACCA-----------------GGTC-CTT---TGTTCCAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA
droSec2	scaffold_11:1895774-1895930 +		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AT------------------G---------------------------------------CTGGAGTGCG----------GGGATGCC----------------------------------------------------GTCGTGTGACCA-----------------GGTC-CTT---TGTTCCAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA
droYak3	v2_chr3L_random_302:6321-6477 +		CCCCACCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AT------------------G---------------------------------------TTGGAGTGCA----------GAGATGCC----------------------------------------------------TTCGTGTTACGA-----------------GGTC-CTT---TGTTTCAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTAGCCGCCGA
droEre2	scaffold_4784:21645046-21645210 +		CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AGGCCG--------------G---------------------------------------TTGGA-TGCA----------GAGAGGCCGACCC-----------------------------------------------GTTGTGTTACCA-----------------GGTC-CTT---TGTTCCAGGGCATTCCCATTAAGGACAACGACAGCTTGTCGGCCATGCTGGCCGCCGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CGCCGCCGATGTTCATACGTGACGATGAGCCTGCGGGAGGAGCGAGGCGGGTGAGTGGG-GT------------------G---GGATGGGATGGGATGTCCTCT----ATC------------------TGCCAC--CAG--------ACACGTGACAA---------------------------------------------------------------------AGTC-CATGTGTATCGTAGGGAATTCCCATTAAGGACAACGATAGCTTGTCGGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................TGGG-GT------------------G---GGATGGGATGGG..........................................................................................................................................................................................................	19	2	25.50	51	0	7	0	1	7	36
.......................................................TGGG-GT------------------G---GGATGGGATGGGA.........................................................................................................................................................................................................	20	2	10.50	21	0	2	0	0	0	19
......................................................GTGGG-GT------------------G---GGATGGGATGGGA.........................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	7
......................................................GTGGG-GT------------------G---GGATGGGATGGG..........................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	6
..........................................................................................................................................................................................................................................................................AACGATAGCTTGTCGGCC..............	18	1	4.00	4	4	0	0	0	0	0
........................................................GGG-GT------------------G---GGATGGGATGGGA.........................................................................................................................................................................................................	19	2	3.50	7	0	1	0	0	0	6
.......................................................TGGG-GT------------------G---GGATGGGATGGGATG.......................................................................................................................................................................................................	22	2	2.00	4	0	0	0	0	0	4
..................................................GTGAGTGGG-GT------------------G---GGATGGGATCC...........................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
........................................................GGG-GT------------------G---GGATGGGATGGG..........................................................................................................................................................................................................	18	2	1.50	3	0	0	0	0	1	2
.........................................................................................................................................................................................................................................................................CAACGATAGCTTGTCGGC...............	18	1	1.00	1	1	0	0	0	0	0
.......................................................TGGG-GT------------------G---GGATGGGATGG...........................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	0	2
.............CATACGTGACGATGAGCCTGCGG......................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................ACAACGATAGCTTGTCGGA...............	19	1	1.00	1	1	0	0	0	0	0
.......GATGTTCATACGTGACGATGAGCCT..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................ATAGCTTGTCGGCCATGC..........	18	1	1.00	1	1	0	0	0	0	0
..............ATACGTGACGATGAGCCTGCGGGA....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................GTGAGTGGG-GT------------------G---GGATGGGA..............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................CAACGATAGCTTGTCGGCC..............	19	1	1.00	1	1	0	0	0	0	0
....................GACGATGAGCCTGCGGGAGGAG................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................CCCATTAAGGACAACGATAG........................	20	1	1.00	1	0	1	0	0	0	0
........................................................GGG-GT------------------G---GGATGGGATGGGAT........................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1
........................................................GGG-GT------------------G---GGATGGGATGGGATT.......................................................................................................................................................................................................	21	7	0.29	2	0	0	0	0	0	2
.......................................................TGGG-GT------------------G---GGATGGGATGGGATT.......................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	1
........................................................GGG-GT------------------G---GGATGGGATGGGAA........................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	1
.......................................................TGGG-GT------------------G---GGATGGGATGGT..........................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

dp5

CGCCGCCGATGTTCATACGTGACGATGAGCCTGCGGGAGGAGCGAGGCGGGTGAGTGGG-GT------------------G---GGATGGGATGGGATGTCCTCT----ATC------------------TGCCAC--CAG--------ACACGTGACAA---------------------------------------------------------------------AGTC-CATGTGTATCGTAGGGAATTCCCATTAAGGACAACGATAGCTTGTCGGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................TGGG-GT------------------G---GGATGGGATGGG..........................................................................................................................................................................................................	19	1	96.00	96	0	54	0	1	0	2	39	0	0	0
.......................................................TGGG-GT------------------G---GGATGGGATGGGA.........................................................................................................................................................................................................	20	1	14.00	14	0	8	0	0	0	0	6	0	0	0
........................................................GGG-GT------------------G---GGATGGGATGGG..........................................................................................................................................................................................................	18	1	13.00	13	0	13	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................ACAACGATAGCTTGTCGGC...............	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................GTGACAA---------------------------------------------------------------------AGTC-CATGTGTATCGTAG..................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................CGTGACGATGAGCCTGCGGGAGGAGC...............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................GAATTCCCATTAAGGACAACGATAGCT......................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CCCATTAAGGACAACGATAGCTTGTC..................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TGAGTGGG-GT------------------G---GGATGGGAT.............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGAGTGGG-GT------------------G---GGATGGGA..............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................GCCTGCGGGAGGAGCGAGGC..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GACAACGATAGCTTGTCGGCC..............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGATAGCTTGTCGGCC..............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTAAGGACAACGATAGCTTGTCGGC...............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GATAGCTTGTCGGCCATGCT.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............TACGTGACGATGAGCCTGCGGGA....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................GCCTGCGGGAGGAGCGAGGCGGG.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................TGGG-GT------------------G---GGATGGGATGGGAT........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................AGCCTGCGGGAGGAGCGAGGC..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCTTGTCGGCCATGCTGGC......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGATAGCTTGTCGGC...............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGATAGCTT.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............ATACGTGACGATGAGCCTGCG.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AACGATAGCTTGTCGGCCATGC..........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GAGCCTGCGGGAGGAGCGAGGC..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................GAGCCTGCGGGAGGAGCGAG............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............CATACGTGACGATGAGCCTGC........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................GG-GT------------------G---GGATGGGATGGGA.........................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................TGGG-GT------------------G---GGATGGGATGG...........................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	1	0	0	0
..................................GGGAGGAGCGAGGCGGGGA.....................................................................................................................................................................................................................................................	19	18	0.06	1	0	1	0	0	0	0	0	0	0	0

droWil2

CGCCACCAATGTTTATACGTGACGATGAGCCAGCCGGTGGTGCGAGAAGGGTAAGTACA--T------------------G----AAGGTG-----TTCTT--------ATC--------------TA--TGCCA---TAG--------ACACGTGACTGGA--GAC----AACTATTTCCTCTGCATCTCTCTC-----TCTCTCTCTCTCTCTCTCTC----------TTT-CTT---TGTCTTAGGGTATACCCATTAAGGACAACGACAGTTTGTCGGCCATGTTGGCCGCTGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................GATGAGCCAGCCGGTGGTGCGAGA...........................................................................................................................................................................................................................................................	24	1	9.00	9	0	0	7	2	0
.......................GATGAGCCAGCCGGTGGTGCGAGAAGGG.......................................................................................................................................................................................................................................................	28	1	7.00	7	0	0	7	0	0
..........................GAGCCAGCCGGTGGTGCGAGAAGGG.......................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	5	0	0
.......................GATGAGCCAGCCGGTGGTGCGAGAA..........................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	3	1	0
....................GACGATGAGCCAGCCGGTGGT.................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	2	2	0
.......................GATGAGCCAGCCGGTGGTGCGA.............................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	4	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGTTTGTCGGC...............	26	1	3.00	3	0	2	0	1	0
............TTATACGTGACGATGAGCCAGCCGGTG...................................................................................................................................................................................................................................................................	27	1	3.00	3	0	1	2	0	0
........................ATGAGCCAGCCGGTGGTGCGAGAAGGG.......................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0
......................CGATGAGCCAGCCGGTGGTGCGAGA...........................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
.....................ACGATGAGCCAGCCGGTGGTGCGA.............................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0
....................GACGATGAGCCAGCCGGT....................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	1	0
..........GTTTATACGTGACGATGAGCCAGCC.......................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	1	0	0
............................GCCAGCCGGTGGTGCGAGAAG.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
....ACCAATGTTTATACGTGACGATGAGC............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..............................CAGCCGGTGGTGCGAGAAGGG.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............TATACGTGACGATGAGCCAGCCGGT....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................CAACGACAGTTTGTCGGCCATGTTGGC......	27	1	1.00	1	0	1	0	0	0
....................GACGATGAGCCAGCCGGTGGTGCGAGA...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.................CGTGACGATGAGCCAGCCGGT....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........GTTTATACGTGACGATGAGCCA..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................GACGATGAGCCAGCCGGTGG..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...................TGACGATGAGCCAGCCGGTGGT.................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................CAGTTTGTCGGCCATGTTGGC......	21	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................GGTATACCCATTAAGGACAACGACAGT.......................	27	1	1.00	1	0	0	0	1	0
............................GCCAGCCGGTGGTGCGAGAA..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................TGAGCCAGCCGGTGGTGCGAGAAGGG.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..........GTTTATACGTGACGATGAGC............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
....................GACGATGAGCCAGCCGGTGGTGCGAG............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.................CGTGACGATGAGCCAGCCGGTGG..................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..............................CAGCCGGTGGTGCGAGAAGGGGT.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................AGTTTGTCGGCCATGTTGGC......	20	1	1.00	1	0	0	0	1	0
............TTATACGTGACGATGAGCCAGC........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........GTTTATACGTGACGATGAGCCAGCCGGT....................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..........GTTTATACGTGACGATGAG.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...............................AGCCGGTGGTGCGAGAAGGG.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
........................ATGAGCCAGCCGGTGGTGCGAGAA..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................TGACGATGAGCCAGCCGGTGGTGCGAGA...........................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.............TATACGTGACGATGAGCCAGCCGGTGGT.................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.......................GATGAGCCAGCCGGTGGTGCGAGAAGG........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
............TTATACGTGACGATGAGC............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGTT......................	19	1	1.00	1	0	0	0	1	0
....ACCAATGTTTATACGTGACGATGAG.............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
................ACGTGACGATGAGCCAGCCGGTGGTGCGA.............................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................CCATTAAGGACAACGACAGTT......................	21	1	1.00	1	0	0	0	1	0
..............ATACGTGACGATGAGCCAGCC.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........GTTTATACGTGACGATGAGCC...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........................GAGCCAGCCGGTGGTGCGAGAAGG........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
................ACGTGACGATGAGCCAGCCGGTG...................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................CAGTTTGTCGGCCATGTTGGCC.....	22	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGTTTGTCG.................	24	1	1.00	1	0	0	1	0	0
..........................GAGCCAGCCGGTGGTGCGA.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..............ATACGTGACGATGAGCCAGCCGGT....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................AGTTTGTCGGCCATGTTGG.......	19	1	1.00	1	0	0	0	1	0
..........GTTTATACGTGACGATGAGCCAGCCGGTG...................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
....................GACGATGAGCCAGCCGGTGGTGCGA.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
..............................CAGCCGGTGGTGCGAGAAGG........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGTTT.....................	20	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................GTATACCCATTAAGGACAACGACAGT.......................	26	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................GGTATACCCATTAAGGACAACGA...........................	23	1	1.00	1	0	1	0	0	0
..............................CAGCCGGTGGTGCGAGAAG.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0

droVir3

CCCCGCCAATGTTTATACGTGACGATGAGCCCGCCGGTGGTGCCAGAAAGGTGCGTATTCA-A---------------------TCACTTCATTCCGAACC----------------------------------------------------------ATCTCGAC----TGA-----------GA----TCTT-----TCACTC-TCCCC---C-------------GCTC-TCT---GTTTGCAGGGCATTCCCATTAAGGACAATGACAGTTTGTCGGCCATGTTGGCCGCTGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................CGCCGGTGGTGCCAGAAAGGGC.....................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
..............ATACGTGACGATGAGCCCGCCGGTGGTGCCAGAAA.........................................................................................................................................................................................................................................................	35	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................CGATGAGCCCGCCGGTGGT.................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTGACGATGAGCCCGCCGGTGGT.................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................GGCATTCCCATTAAGGACAATGACA.........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GTTTGTCGGCCATGTTGGC......	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTATACGTGACGATGAGCCCGCCGGTG...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAGCCCGCCGGTGGTGCCA.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................ACAATGACAGTTTGTCGGC...............	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GACAGTTTGTCGGCCATGTTGGC......	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CATTAAGGACAATGACAGTTTGT...................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAGCCCGCCGGTGGTGCCAGAAA.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGACGATGAGCCCGCCGGTGGTGCC..............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................GACGATGAGCCCGCCGGT....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ATGACAGTTTGTCGGCCATG...........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGATGAGCCCGCCGGTGGTGCCA.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................CGTGACGATGAGCCCGCCGGTGGTGCCA.............................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTGACGATGAGCCCGCCGGTGG..................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................ACGTGACGATGAGCCCGCCGGTGGTGC...............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AATGTTTATACGTGACGAT................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAATGACAGTTTGTCGGC...............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATGAGCCCGCCGGTGGTGCCA.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................CCGCCGGTGGTGCCAGAAAGGGC.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTCCCATTAAGGACAATGACAGTT......................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGACAATGACAGTTTGTCGGC...............	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CGCCGGTGGTGCCAGAAA.........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTATACGTGACGATGAGCC...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......CAATGTTTATACGTGACGATGAGC............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGTGACGATGAGCCCGCCGGTGGTGCC..............................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................C-TCCCC---C-------------GCTC-TCT---GTTTGCAG..................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTGACGATGAGCCCGCCGGTG...................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TAAGGACAATGACAGTTTGTC..................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GATGAGCCCGCCGGTGGTGC...............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CGCCGGTGGTGCCAGAAAGG.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GCCAATGTTTATACGTGAC...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGACGATGAGCCCGCCGGTGGT.................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ACTTCATTCCGAACC----------------------------------------------------------ATCTCGAC----TGA-----------G................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGAGCCCGCCGGTGGTGCCA.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGTTTATACGTGACGATGAGCCC..........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................GAGCCCGCCGGTGGTGCCAGAAAGGGCA....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATGAGCCCGCCGGTGGTGCCAGAAAGGG......................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................GCCGGTGGTGCCAGAAAGGGC.....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......CAATGTTTATACGTGACGATGAGCC...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GACAATGACAGTTTGTCGGCC..............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AATGTTTATACGTGACGATGAGCCC..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTCCGCCGATGTTTATACGTGACGACGAGCCGGCTGGCGGTGCCAGAAAGGTGGGTACTCG-A--------------------------------------------------------------ACACA-C--CACAAAG--------TCACGTGGCTAAACAG------CACTCTCTCT----CACTCCT--C-------TCTCTCTCTCTCTCTCTCTATCTCTGTTGTC-------TTCTACAGGGCATACCCATTAAGGACAACGACAGCTTGTCGGCCATGCTAGCCGCTGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................CAACGACAGCTTGTCGGCCATGCT.........	24	1	2.00	2	2	0	0	0	0	0
.......GATGTTTATACGTGACGACGAGC............................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................CGTGGCTAAACAG------CACTCTCTCT----.................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................GACGAGCCGGCTGGCGGTGC...............................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................GTGACGACGAGCCGGCTGGCGGTGCC..............................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CAACGACAGCTTGTCGGCCATGC..........	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCTTGTCGGCCATGCTAGC......	19	1	1.00	1	1	0	0	0	0	0
.....................ACGACGAGCCGGCTGGCGGT.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......GATGTTTATACGTGACGACGAGCCG..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................GACGACGAGCCGGCTGGCGGTG................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
CTCCGCCGATGTTTATACGTGACGAC................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................ACAACGACAGCTTGTCGGCCATGCT.........	25	1	1.00	1	1	0	0	0	0	0
....................GACGACGAGCCGGCTGGCGGT.................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............ATACGTGACGACGAGCCGGCT.......................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................CAAAG--------TCACGTGGCTAAACAG------C..............................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCTTGTCGGC...............	26	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................ACAACGACAGCTTGTCGGCCATGCTAGCC.....	29	1	1.00	1	1	0	0	0	0	0
.............TATACGTGACGACGAGCCGGCTGGCGGT.................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................AACGACAGCTTGTCGGCCATGCTAGC......	26	1	1.00	1	1	0	0	0	0	0

droGri2

CCCCACCCATGTTTATACGTGACGATGAGCCAGCCGGAGGCGCACGAAAGGTAAGCACCCA-TACCCACCCCGGGACAATGTA-A------------------CC----ACCTCTGTGTGCAGGCCCACA----------ATAATGTG----------------------------------------------------GCCCTGTGCCCCTGTGCCTC----------TGT-GTC---TGTTGCAGGGCATACCCATTAAAGACAACGACAGTCTGTCGGCCATGCTTGCCGCTGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................ATGAGCCAGCCGGAGGCGCACG............................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
.......................GATGAGCCAGCCGGAGGCGCACG............................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

droAna3

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGGGCCAGGCGGGTAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCAGGTGAA---GCAGC------------------CGCTGACT-----C-TACCA-----------------CATCCTTC---CCCTTCAGGGCATTCCTATTAAGGACAACGACAGCTTATCGGCCATGCTGGCTGCCGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............CATACGTGACGACGAGCCAGCCGGCGG..................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
...................................................TAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCAGGTG......................................................................................................................................	25	1	2.00	2	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................AGCTTATCGGCCATGCTGGC......	20	1	2.00	2	0	1	1	0	0	0
..................................................GTAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCA..........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................ACGACAGCTTATCGGCCATGCTGGCC.....	26	1	1.00	1	0	1	0	0	0	0
..............ATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................ACAACGACAGCTTATCGGCCATG...........	23	1	1.00	1	0	0	0	0	0	1
...................................................TAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACT...........................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................CCTATTAAGGACAACGACAGCTTATC..................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................AACGACAGCTTATCGGCC..............	18	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................GACAACGACAGCTTATCGGC...............	20	1	1.00	1	1	0	0	0	0	0
..........GTTCATACGTGACGACGAGCCAGCC.......................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................GTAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCAGGC.......................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................CGAGCCAGCCGGCGGGGCCAGGCGGGGC.....................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...................................................TAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCAGG........................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................GTAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACC...........................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................GGCCAGGCGGGTAAGTGGG-AT------------------G---------------------------------------------------------------------C...................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0

droBip1

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGGGCTAGGCGGGTAAGTGGG-AT------------------G---------------------------------------------------------------------CACGTGACCAGGTGAACACGGAGC------------------CACTGACT-----C---CCA-----------------CCTCCTTC---CCCTCTAGGGCATTCCCATTAAGGACAACGACAGCTTATCGGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CACCGCCAATGTTTATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTAAGTGCCGG-A---------------------GCCAAGGATTCCGGATT----GCCTATC------------------TCTGGC--CAG--------GCACGTGACCA---------------------------------------------------------------------GGTCTCTT---CTTTCCAGGGCATACCCATTAAGGACAACGACAGCCTGTCGGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGCGCCAGGCGGGTAAGTAGG-GC------------------T---TAAGGGG--------C--TCC----ACC---------------TC-CC--CGCGTAG--------TCACGTGACCGGGCTG-----------------------------------------------------------------CTC-CTC---CGTTGTAGGGAATCCCCATCAAGGACAACGACAGCCTGTCCGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCAAGGAGGGTGAGTTCG-AC----------------------------------------CATCCCTGCC------------------T-------CTG--------GCACGTGACCAGGTTGAC--------------------------------T-----------------------------TATCCTTC---TCGTCCAGGGCATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGCGCCAGGAGGGTGAGTTGG-AT------------------T------------------------CCCAGCC------------------T-------CTG--------GCACGTGACCAGGTTGAC----TGC---------------------------------CCCCA---TTC-----------CCTC-CAT---TTGTCCAGGGCATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCCCGCCGATGTTCATACGTGACGACGAGCCGGCCGGCGGGGCAAGGAGGGTGAGTTGG-TT------------------GCA-G----------------CTAT----ACC------------------TGTGGG--CTG--------ATACGTGACCA---------------------------------------------------------------------GGTC-CTT---TGTTCCAGGGCATTCCCATTAAGGACAACGACAGTTTGTCCGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCCCGCCGATGTTCATACGTGACGATGAGCCAGCCGGCGGTGCCAGGAGGGTGAGTTGG-AA------------------ACGCGGA------------TT----GCCTGGC------------------T-TGGG--CCC--------ATACGTGACCA---------------------------------------------------------------------GGTC-CTT---CGTTCCAGGGCATTCCCATTAAGGACAACGACAGTTTGTCCGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGTGCCAGGAGGGTGAGTGGG-AT------------------ACATGGA------------TT----CCCTGCC------------------TCTAAG--CCG--------ACACGTGACCA---------------------------------------------------------------------GGTA-TTT---TGTTCCAGGGCATTCCCATTAAGGACAACGACAGTTTGTCTGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCCCGCCAATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCCGGAGGGTGAGTTTA-AT------------------T---------------------------------------CTGGAGTGCG----------GGGATGCC----------------------------------------------------GTCGTGTGACCA-----------------GGTC-TTT---TGTTCTAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........GTTCATACGTGACGACGAGCC...........................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................GAGCCAGCCGGCGGAGCCC.............................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GACGAGCCAGCCGGCGGAGCCCGGAG.........................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGACGACGAGCCAGCCGGCGG..................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................ACGACGAGCCAGCCGGCGGAGCCCGGA..........................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.......................GACGAGCCAGCCGGCGGAGCCCGGAGG........................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GACGACGAGCCAGCCGGCGGAGCCC.............................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
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....................GACGACGAGCCAGCCGGCGG..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................GACGAGCCAGCCGGCGGAGCC..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.CCCGCCAATGTTCATACGTGA....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTGTGACCA-----------------GGTC-TTT---TGTTCTAG..................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTCATACGTGACGACGAGCCAGCC.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AT------------------G---------------------------------------CTGGAGTGCG----------GGGATGCC----------------------------------------------------GTCGTGTGACCA-----------------GGTC-CTT---TGTTCCAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............CATACGTGACGACGAGCC...........................................................................................................................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TCATACGTGACGACGAGCC...........................................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CATACGTGACGACGAGCCAGCC.......................................................................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGACGACGAGCCAGCC.......................................................................................................................................................................................................................................................................	21	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GGTATTCCCATTAAGGAC................................	18	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCTTGT...................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GTTCATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......CGATGTTCATACGTGACG..................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........TTCATACGTGACGACGAGCCAGT........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGACGACGAGCCAGCC.......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAGCCAGCCGGCGGAGCC..............................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCT......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CATACGTGACGACGAGCCAGCCGGCGGA.................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTCCCATTAAGGACAACGACA.........................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CCCATTAAGGACAACGACAGCTTGTCTGC...............	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TAAGGACAACGACAGCTT.....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTCCCATTAAGGACAACGACAGCTTG....................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GATGTTCATACGTGACGACG...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GACAACGACAGCTTGTCTGCCATGCTGGC......	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTATTCCCATTAAGGACA...............................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTCATACGTGACGACGAGC............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CCCATTAAGGACAACGACAG........................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CATTAAGGACAACGACAGCT......................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCTT.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ACGACGAGCCAGCCGGCGGAGC...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTATTCCCATTAAGGACAAC.............................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AT------------------G---------------------------------------CTGGAGTGCG----------GGGATGCC----------------------------------------------------GTCGTGTGACCA-----------------GGTC-CTT---TGTTCCAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................AGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0
.......................GACGAGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	28	1	3.00	3	0	1	1	1
............................GCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0
...............................AGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0
...............................AGCCGGCGGAGCCAGGAGGGGT.....................................................................................................................................................................................................................................................	22	1	2.00	2	1	1	0	0
..................GTGACGACGAGCCAGCCGGCGGAGCC..............................................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0
.....................................................AGTTGG-AT------------------G---------------------------------------CTGGAGTGCG----------GG............................................................................................................................................................	21	1	2.00	2	2	0	0	0
.......GATGTTCATACGTGACGACGA..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
................ACGTGACGACGAGCCAGCCG......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.......................................................TTGG-AT------------------G---------------------------------------CTGGAGTGCG----------GG............................................................................................................................................................	19	1	1.00	1	1	0	0	0
....................GACGACGAGCCAGCCGGCGGAGCC..............................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..............ATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................AAGGACAACGACAGCTTGT...................	19	1	1.00	1	0	1	0	0
.......................GACGAGCCAGCCGGCGGAGCCA.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.....................................................AGTTGG-AT------------------G---------------------------------------CTGGAGTGC.........................................................................................................................................................................	18	1	1.00	1	0	0	0	1
......................................................GTTGG-AT------------------G---------------------------------------CTGGAGTGCG----------GG............................................................................................................................................................	20	1	1.00	1	1	0	0	0
.......................GACGAGCCAGCCGGCGGAGCCAGG...........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
........................ACGAGCCAGCCGGCGGAGCCA.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.......GATGTTCATACGTGACGACGAGCCA..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........................ACGAGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..............................CAGCCGGCGGAGCCAGGAGGGGT.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
......................CGACGAGCCAGCCGGCGGAGCCAG............................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCTT.....................	20	1	1.00	1	0	1	0	0
...........................AGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

droYak3

CCCCACCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AT------------------G---------------------------------------TTGGAGTGCA----------GAGATGCC----------------------------------------------------TTCGTGTTACGA-----------------GGTC-CTT---TGTTTCAGGGTATTCCCATTAAGGACAACGACAGCTTGTCTGCCATGCTAGCCGCCGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................GCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	23	2	2.00	4	0	0	0	0	0	0	4	0	0	0	0
..........GTTCATACGTGACGACGAGC............................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCTTGT...................	22	2	1.50	3	1	0	0	0	0	0	2	0	0	0	0
..........................GAGCCAGCCGGCGGAGCCAGGAGG........................................................................................................................................................................................................................................................	24	2	1.50	3	0	0	0	0	0	0	3	0	0	0	0
.......................GACGAGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	3	0	0	0	0
..............ATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	24	2	1.50	3	0	1	1	0	0	0	1	0	0	0	0
..........GTTCATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................CATTAAGGACAACGACAGCT......................	20	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................GACGAGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................GAGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
.............CATACGTGACGACGAGCCAGCCGGCGGA.................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............TACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	23	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
......................CGACGAGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............................CAGCCGGCGGAGCCAGGAGG........................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........................GAGCCAGCCGGCGGAGCCAGGAGGGGT.....................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
....................GACGACGAGCCAGCCGGCGGAGCCA.............................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................AGCTTGTCTGCCATGCTAGCCGC...	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.........................CGAGCCAGCCGGCGGAGCCAGGAG.........................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
......................CGACGAGCCAGCCGGCGGAGC...............................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................CGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
......................CGACGAGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................CATTAAGGACAACGACAGCTT.....................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................GCTTGTCTGCCATGCTAGC......	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ACGACAGCTTGTCTGCCATGCTAGCCG....	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................AGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................GTATTCCCATTAAGGACAACGACAGCTT.....................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................CAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................AGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.......................GACGAGCCAGCCGGCGGAGCCAGGAG.........................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCT......................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
........................ACGAGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............................AGCCGGCGGAGCCAGGAGG........................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................GAGATGCC----------------------------------------------------TTCGTGTTACGA-----------------.....................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................CATTAAGGACAACGACAGCTTGT...................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................TCCCATTAAGGACAACGACAGCT......................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
............................GCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................CGACGAGCCAGCCGGCGGAGCCAGG...........................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
....................GACGACGAGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..................GTGACGACGAGCCAGCCGGCGGAGC...............................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............ATACGTGACGACGAGCCAGCC.......................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................GCCGGCGGAGCCAGGAGGGGT.....................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
...................................GGCGGAGCCAGGAGGGGT.....................................................................................................................................................................................................................................................	18	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CCCCGCCGATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCAGGAGGGTGAGTTGG-AGGCCG--------------G---------------------------------------TTGGA-TGCA----------GAGAGGCCGACCC-----------------------------------------------GTTGTGTTACCA-----------------GGTC-CTT---TGTTCCAGGGCATTCCCATTAAGGACAACGACAGCTTGTCGGCCATGCTGGCCGCCGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................GCCAGCCGGCGGAGCCAGGAGGGGC.....................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	2	2	0
............................GCCAGCCGGCGGAGCCAGGAGG........................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	3	0	0
..........................GAGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	1	0	0
.......GATGTTCATACGTGACGACG...............................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0
...........................AGCCAGCCGGCGGAGCCAGGAGGGG......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCTTGTC..................	23	1	1.00	1	0	0	0	0	0	1	0
...........................AGCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
........................ACGAGCCAGCCGGCGGAGCCAGGAGGGGC.....................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................GACAACGACAGCTTGTCGGCCATGCTGGC......	29	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAGGACAACGACAGCTTGTCG.................	24	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................GACAACGACAGCTTGTCGGCC..............	21	1	1.00	1	1	0	0	0	0	0	0
..........................GAGCCAGCCGGCGGAGCCAGGAGG........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
........................ACGAGCCAGCCGGCGGAGCCAGGAG.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................GGCATTCCCATTAAGGAC................................	18	1	1.00	1	0	1	0	0	0	0	0
......................CGACGAGCCAGCCGGCGGAGCCAG............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...........................AGCCAGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...............TACGTGACGACGAGCCAGCCGG.....................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................GACGACGAGCCAGCCGGCGGAGC...............................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................TGCA----------GAGAGGCCGACCC-----------------------------------------------GTTGTGTTA.........................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
..........GTTCATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.............CATACGTGACGACGAGCC...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
............................GCCAGCCGGCGGAGCCAGGAGGGG......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
......................CGACGAGCCAGCCGGCGGAGCCA.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..............ATACGTGACGACGAGCCAGCCGGCGGA.................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........TTCATACGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.................CGTGACGACGAGCCAGCCGGC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................CATTAAGGACAACGACAGCTTGTCGGC...............	27	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTAAGGACAACGACAGCTTGTCGGCC..............	26	1	1.00	1	0	0	0	0	1	0	0
.......................GACGAGCCAGCCGGCGGAGCCAG............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
............................GCCAGCCGGCGGAGCCAGGA..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................TTCCCATTAAGGACAACGAC..........................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................CCATTAAGGACAACGACAGCTTGTCG.................	26	1	1.00	1	0	0	0	0	0	1	0
..............ATACGTGACGACGAGCCAGCCGGCG...................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CCCATTAAGGACAACGACAGCTTGTCG.................	27	1	1.00	1	0	0	0	0	1	0	0
......CGATGTTCATACGTGACGAC................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................TTCCCATTAAGGACAACGACA.........................	21	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATTCCCATTAAGGACAACGAC..........................	21	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................TTAAGGACAACGACAGCTTGTCGGC...............	25	1	1.00	1	0	0	0	0	0	1	0
...........................AGCCAGCCGGCGGAGCCAGGAGG........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..........................GAGCCAGCCGGCGGAGCCAGGAGGGG......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.......................GACGAGCCAGCCGGCGGAGCCAGG...........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
..........................GAGCCAGCCGGCGGAGCCAG............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................AGCCGGCGGAGCCAGGAGGG.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0

-22.2	-21.6	-21.6	-21.6

dpe_1699

scaffold_45:440792-440865 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads