dpe_1697

exon [dper_GLEANR_7912:1]; CDS [Dper\GL25420-cds]; CDS [Dper\GL25419-cds]; exon [dper_GLEANR_7911:12]; intron [Dper\GL25419-in]

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------###################################------######### TGGGACTGCGACTGGGACTGGGGACAGAACTTATTTAAATACCGATGTCTGGTCGCAGAACGAATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCCCTGTCGTGGGATATAGGATAAGCCCCACACAACCTGCATATATTCAGGATATTATAGCTCTGTCAGTGCTTCCTGCTTCCTCCTTTTAGTGCTACCCGAACCGTACCGTACCGTACCGAACTAAATCAAAATGTGTGAC ************************************************((..((((...(((.((((..(((.(((((......(((((((((.....)))))).)))...(((.(((((.............)))))))).((((........)))).....)))))...))))))).)))))))..)).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V111 male body	M042 female body	M021 embryo
.......GCGACTGGGACTGGGGACAGA...............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
..................................................................ACTCTGATTGCTGTCGCT.......................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0
.......................................................................GATTGCTGTCGCTGTTGGT.................................................................................................................................................................	19	1	2	0.50	1	1	0	0	0
............TGGTACTGGGGACAGAAAT............................................................................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0
..........................................................................................................................................ACACAACCTGCATTGATT...............................................................................................	18	2	7	0.14	1	1	0	0	0
..........ACTGGGACTGAGGACAGC...............................................................................................................................................................................................................................	18	2	11	0.09	1	1	0	0	0
..........................................................................TGCTGTCGCTGTTGGATTTG.............................................................................................................................................................	20	1	12	0.08	1	0	0	0	1
..........................................................................TGCTGTCGCTGTTGGATTA..............................................................................................................................................................	19	1	12	0.08	1	0	0	1	0
..........................................................................TGCTGTCGCTGTTGGATT...............................................................................................................................................................	18	0	12	0.08	1	0	0	1	0
...................................................................................................................ACGTGGGATACCGGATAAG.....................................................................................................................	19	3	16	0.06	1	1	0	0	0

ACCCTGACGCTGACCCTGACCCCTGTCTTGAATAAATTTATGGCTACAGACCAGCGTCTTGCTTAGTGAGACTAACGACAGCGACAACCTAAATGTGCAGCACTCACGGCGGGACAGCACCCTATATCCTATTCGGGGTGTGTTGGACGTATATAAGTCCTATAATATCGAGACAGTCACGAAGGACGAAGGAGGAAAATCACGATGGGCTTGGCATGGCATGGCATGGCTTGATTTAGTTTTACACACTG ************************************************((..((((...(((.((((..(((.(((((......(((((((((.....)))))).)))...(((.(((((.............)))))))).((((........)))).....)))))...))))))).)))))))..)).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head
...................................................................................................................................................................ACTATCGAGACAGCCACTA.....................................................................	19	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_45:432391-432641 -	dpe_1697	TGGGAC--------TGCG--ACTG--GGAC--------------------------------------------------------------------TGGGGACAGAACTTATTTAAATACCGATGTCTGGTCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCCCTGTCGT-----------GGG-------------------------------------------------------------------------------------------------------ATAT--AGGATAAGCCCCACACAACCTG-------CATATATTCAGGATATTATAGCTCTGTCAGTGCTTCCTGCTTCCTCCTTTTAGTGCTA-C-CC---------------GAACCGTACCGTACCGTACC------------GAA-CTAAATCAAAATGTGTGAC
dp5	XR_group8:6051501-6051751 +		TGGGAC--------TGCG--ACTG--GGAC--------------------------------------------------------------------TGGGGACAGAACTTATTTAAATACCGATGTCTGGTCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCCCTGTCGT-----------GGG-------------------------------------------------------------------------------------------------------ATAT--AGGATAAGCCCCACACAACCTG-------CATATATTCAGGATATTATAGCTCTGTCAGTGCTTCCTGCTTCCTCCTTCTAGTGCTA-C-CC---------------GAACCGTACCGTACCGTACC------------GAA-CTAAATCAAAATGTGTGAC
droWil2	scf2_1100000004762:1834649-1834884 -		GAAAG---------------------------------------------------------------------------------------------------TGCAACTTATTTAAATGCATGAGTTCGA-CATAGAACGGAATCACTTTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTTTC-------GTCTATTCTAGTGGATTAAATTTTTTTTTGCTGTGTTTTTTTTTTTATGGTTATTTTTTTTGCTTAAGGATACATGTCCTGATATTTGGCAATTCT-----------------------------------------------------------------------------CA--------------------TCTCGTTGTAG--CCT-T-TT------------------------------GAAAC------TT----ATA-TCAACTAAACATGTGTGAC
droVir3	scaffold_13049:20948660-20948849 +		-------------------------------------------------------------------------------------------------------ACAGAACTTATTTAAATGCAGACGTCGGC-CATAGAGCG-AATCACTCTGATTGCTGTCGCTGTGGTATATACACGTCGTGAGTGGCGCCTCTTCCGTCTATC----------------------------------------------------------------------------------------------------------------GAA--AGGATT--------------TAACGTCTGG--------------------GGCTTTCTT------------TA---TTGTAGTGCTG-C-CT----------------GCTCG-------TTTAGCTTAATTTCAAC--AATCTTTTGCCAAAATGTGTGAC
droMoj3	scaffold_6680:15303342-15303553 +		CAAAACAAATATCCATTGTTCTGGCAAGAT--------------------------------------------------------------------GACGGACAGAACTTATTTAAATGCAGATGTCGG-CCATATAGCG-AATCACTCTGATTGCTGTCGCTGTGCTATATACACGTCGTGAGTGGCGCCTGTGC----CATCGC-----------------------------------------------------------------------TA-AT--------CGCTG--------------AT-C---GTA--AGGATC--------------TAA-------------------------C-GTCTGGCTG------------TCTCTTTGCAGCT------------------------------------T-----------TCAACTTAATCTTCTGCCAAAATGTGTGAC
droGri2	scaffold_15110:22749672-22749863 -		-----------------------------------------------------------------------------------------------------GGACAGAGCTTATTTAAATGCCGATGTCGGC-CATAGAGCG-AATCACTCTGATTGCTGTCGCTGTGGTATATAGACGTCGTGAGTGGCGT---GAACGCT--TTGG-----------------------------------------------------------------------T-------------------------------GTCTGTTGCA--AGGATA--------------TAACAACTGGG------------------GA-TTTTCTG------------TATTTTAGTAGTGCTG-C-CC------------------------------CAA-C-AATCTCAAC--AATCTTAAGCCAAAATGTGTGAC
droAna3	scaffold_13337:21112861-21113143 +		TGGGAT--------GGGG--CTTA--GGAATGGGCCGGGGCATAGAATGGAGAGGAATGGTGGGGATAGGGGTGCAGATGGGGGTGAAGATGGGGGGAGCGGGACAGAACTTATTTAAATGCGGTGGACAGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCC-TGTCCACCAATCCG-----------------------------------------------------------------------TA-A---------CCGTA-------ACC-G-AATCCGTA------GGATAA---------------------------------------------CTATCTG------------TATCCTTGTAGTGATTGCTCC---------------GAACCG-------CCGAACC------------TAA-CCCAAACAAAATGTGTGAC
droBip1	scf7180000396707:317011-317274 -		TGGGCC--------TGGG--CATG--GGAATG-GCAGGGGC-----------------GGTGGGTAAAGGGGA-CAGATGGGGGTGAAGATGGGGGGAGCGGGACAGAACTTATTTAAATGCGGTGGATAGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCC-TGTCCACCAATCCG-----------------------------------------------------------------------TA-A---------CCGTA-------ACC-G-AATCCGTA------GGATAA---------------------------------------------CTGTCTG------------AATCCTTGTAGTGATTGCTCC---------------GAACCG-------CCAAACC------------TAA-CCCAAACAAAATGTGTGAC
droKik1	scf7180000302441:2083771-2083936 -		AGGGAG--------A--G--CTTG--GGAT--------------------------------------------------------------------CTCGGACAGAACTTATTTAAATGCGGCTGCCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGTCATT---------------GGG-------------------------------------------------------------------------------------------------ATTATTAGGACCAGGATAA---CCAAAGGATATA-------CAT-----------------------------------------------------------------------------------------------------------A-----AACTA--AAAATATAAT
droFic1	scf7180000453945:135831-136051 +		TGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------CA-A------------------------------CCGCAGA---AGGATAA---C-------------------------------------CGCTCTGTCTG------------AATCCTTGTAGTGCCTT--GTAGTGCCGCTCCACTCCACTCCGCTCGAACCGAACC------------GAA-CTAACCAAACATGTGTGAC
droEle1	scf7180000491199:854503-854732 -		TGGGGC--------T-------GGCGGGGG--------------------------------------------------------------------CTGGGACAGAACTTATTTAAATGCAGCGGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGTCTTGTCCGCACATCCG-----------------------------------------------------------------------CACAT--------CCGCA-----CAATC-GCAACTTGCAGAA--AGGATAA---C----------------CAG------------------CGATCTCTCTG------------TGTCCTTATAGTGTCGCCCCC------------------------------GAACC-AAAACCAAC---AA-CTAACCGAGAATGTGTGAC
droRho1	scf7180000778109:1892-2097 -		TGGGGC---------------TGGCGGA----------------------------------------------------------------------CAGGGACAGAGCTTATTTAAATGCAGCTGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------T----------------A--------------ACTTGCAGAA--AGGATAA---C-------------------------------------CGATCTGTCTGTAAATAG-----TATCCTTGTAGTGCCG-C-CC------------------------------GAACC------------AAA-CTAGCCAAAAATGTGTGAC
droBia1	scf7180000302377:1305583-1305787 -		TGG---------------------CGGG----------------------------------------------------------------------CCGGGACAAAACTTATTTAAATGCAGATGTCGGAGCCCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCCGTCCGCACATCCG-----------------------------------------------------------------------CA-AT--------CCGTA-------TCC-GTAGTTCGCAGGA--AGGATAA---C-------------------------------------CGATCTGTCTG------------TATCCTTGCAGTGCCG-C--C------------------------------GAGCC------------AAA-CTAGCCTAGAATGTGTGAC
droTak1	scf7180000414002:127269-127475 +		TGGGGC---------------TTGCGGG----------------------------------------------------------------------CCGGGACAGAACTTATTTAAATGCAGATGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------TC-AT--------CCGTA-------------CATCCGCAGGA--AGGATAA---C-------------------------------------CGATCTATCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GAACC------------AAA-CTAACCAAGAATGTGTGAC
droEug1	scf7180000409472:813876-814086 +		GAGGGC--------CAC----------G----------------------------------------------------------------------ACGGGACAGAACTTATTTAAATGCAGCTGTCGGAGTGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------AA-AT--------CCGTA-------ATCCGTAGTCCGCTAAA--GGGATAA---C-------------------------------------CGATCTCTCTG------------TATCCTTGTAGTGCCG-CCCC------------------------------GAACC------------AAA-CTAACCAAACATGTGTGAC
dm3	chr3L:21978260-21978459 +		CGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCATAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTAGTCTTGTCCGCCCATCCG-----------------------------------------------------------------------AA-AT--------CCGTA--------------ACCCGCATAA--GGGATAA---C-------------------------------------CGATCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------AAA-CTAACCAAACATGTGTGAC
droSim2	3l:21493576-21493775 +	dsi_1606	CGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCTTGTCCGCCCATCCT-----------------------------------------------------------------------AA-AT--------CCGTA--------------ACCCGCATAA--GGGATAA---C-------------------------------------CGTTCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------AAA-CTAACCAAACATGTGTGAC
droSec2	scaffold_11:1903927-1904126 +		CGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCTTGTCCGCCCATCCT-----------------------------------------------------------------------AA-AT--------CCGTA--------------ACCCGCATAA--GGGATAA---C-------------------------------------CGTTCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------AAA-CTAACCAAACATGTGTGAC
droYak3	3L:22306370-22306582 +		CGGGCC--------GGCGGACCGGCGGG----------------------------------------------------------------------CCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCTTGTCTGCCCATCCG-----------------------------------------------------------------------AA-AT--------CCGTA--------------ATTCGTATAA--GGGATAA---C-------------------------------------CAATCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GTACC------------AAA-CTAACCAAACATGTGTGAC
droEre2	scaffold_4784:21653324-21653548 +		CGGGCC--------GGCGGACCGGCGGG----------------------------------------------------------------------CCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCCCATCCG-----------------------------------------------------------------------AA-AT--------CCGTAGTCCGTAATC-GTAATCCGTATAA--GGGATAA---C-------------------------------------C-CTCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------GAA-CTAACCAAACATGTGTGAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TGGGAC--------TGCG--ACTG--GGAC--------------------------------------------------------------------TGGGGACAGAACTTATTTAAATACCGATGTCTGGTCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCCCTGTCGT-----------GGG-------------------------------------------------------------------------------------------------------ATAT--AGGATAAGCCCCACACAACCTG-------CATATATTCAGGATATTATAGCTCTGTCAGTGCTTCCTGCTTCCTCCTTTTAGTGCTA-C-CC---------------GAACCGTACCGTACCGTACC------------GAA-CTAAATCAAAATGTGTGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............GCG--ACTG--GGAC--------------------------------------------------------------------TGGGGACAGA.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................ACTCTGATTGCTGTCGCT................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................GATTGCTGTCGCTGTTGGT..........................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	1	0
...........................................................................................................................................................TGCTGTCGCTGTTGGATTTG......................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	1	0	0	0	0	0
...........................................................................................................................................................TGCTGTCGCTGTTGGATTA.......................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................TGCTGTCGCTGTTGGATT........................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0

dp5

TGGGAC--------TGCG--ACTG--GGAC--------------------------------------------------------------------TGGGGACAGAACTTATTTAAATACCGATGTCTGGTCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCCCTGTCGT-----------GGG-------------------------------------------------------------------------------------------------------ATAT--AGGATAAGCCCCACACAACCTG-------CATATATTCAGGATATTATAGCTCTGTCAGTGCTTCCTGCTTCCTCCTTCTAGTGCTA-C-CC---------------GAACCGTACCGTACCGTACC------------GAA-CTAAATCAAAATGTGTGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................T--AGGATAAGCCCCACACAACCTG-------CATAT................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................GAACTTATTTAAATACCGATGTCTGGT................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GTCGTGAGTGCCGCCCTGTCGT-----------GGG-------------------------------------------------------------------------------------------------------A.......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTACCGTACCGTACC------------GAA-CC.................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGTACCGTACC------------GAA-CTAAAT.............	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGTACCGTACCGTACC------------.......................	20	5	0.40	2	0	1	0	1	0	0	0	0	0	0

droWil2

GAAAG---------------------------------------------------------------------------------------------------TGCAACTTATTTAAATGCATGAGTTCGA-CATAGAACGGAATCACTTTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTTTC-------GTCTATTCTAGTGGATTAAATTTTTTTTTGCTGTGTTTTTTTTTTTATGGTTATTTTTTTTGCTTAAGGATACATGTCCTGATATTTGGCAATTCT-----------------------------------------------------------------------------CA--------------------TCTCGTTGTAG--CCT-T-TT------------------------------GAAAC------TT----ATA-TCAACTAAACATGTGTGAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................ATTTACACGTCGTGAGTG.........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.................................................................................................................................................TCACTTTGATTGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................TGATTGCTGTCGCTGTTGGATTTACAC...................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..................................................................................................................................................CACTTTGATTGCTGTCGCTGTTGG...........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0

droVir3

-------------------------------------------------------------------------------------------------------ACAGAACTTATTTAAATGCAGACGTCGGC-CATAGAGCG-AATCACTCTGATTGCTGTCGCTGTGGTATATACACGTCGTGAGTGGCGCCTCTTCCGTCTATC----------------------------------------------------------------------------------------------------------------GAA--AGGATT--------------TAACGTCTGG--------------------GGCTTTCTT------------TA---TTGTAGTGCTG-C-CT----------------GCTCG-------TTTAGCTTAATTTCAAC--AATCTTTTGCCAAAATGTGTGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................G-C-CT----------------GCTCG-------TTTAGCTTAA................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC--AATCTTTTGCCAAAATGTGT...	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAC--AATCTTTTGCCAAAATGTGT...	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AGAGCG-AATCACTCTGATTGCTGTCGCT................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GTATATACACGTCGTGAGTGG........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................GGATT--------------TAACGTCTGG--------------------GGC.............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTTCCGTCTATC----------------------------------------------------------------------------------------------------------------GAA--AGGA..............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTTTGCCAAAATGTGTGA.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAC--AATCTTTTGCC............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCTGATTGCTGTCGC.................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--AATCTTTTGCCAAAATGTGT...	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAC--AATCTTTTGCCAAAATGTGT...	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCTGATTGCTGTCGCTGTGGTA..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TCCGTCTATC----------------------------------------------------------------------------------------------------------------GAA--AGGATT--------------..............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCG-------TTTAGCTTAATTTCAAC--.......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TCACTCTGATTGCTGTCGCTGTG.............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCTGATTGCTGTCGCTGTG.............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGATTGCTGTCGCTGTGGTAT.........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGATTGCTGTCGCTGTGGTATA........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--AATCTTTTGCCAAAATGTGT...	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTG-C-CT----------------GCTCG-------TTTAGCTTA.................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCAAC--AATCTTTTGCCAAAATGT.....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCTGATTGCTGTCGCTGTG.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCTGATTGCTGTCGCTGT..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGATTGCTGTCGCTGTGGTATATACA....................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAC--AATCTTTTGCCAAA.........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------TTTAGCTTAATTTCAAC--.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTCAAC--AATCTTTTGCCA...........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGATTGCTGTCGCTGTGG............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGCCAAAATGTGTGAC	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAC--AATCTTTTGCCAA..........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAAAACAAATATCCATTGTTCTGGCAAGAT--------------------------------------------------------------------GACGGACAGAACTTATTTAAATGCAGATGTCGG-CCATATAGCG-AATCACTCTGATTGCTGTCGCTGTGCTATATACACGTCGTGAGTGGCGCCTGTGC----CATCGC-----------------------------------------------------------------------TA-AT--------CGCTG--------------AT-C---GTA--AGGATC--------------TAA-------------------------C-GTCTGGCTG------------TCTCTTTGCAGCT------------------------------------T-----------TCAACTTAATCTTCTGCCAAAATGTGTGAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................TATTTAAATGCAGATGTCGG-CCA..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................AT--------CGCTG--------------AT-C---GTA--AGGATC--------------TAA-------------------------C-G...............................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droGri2

-----------------------------------------------------------------------------------------------------GGACAGAGCTTATTTAAATGCCGATGTCGGC-CATAGAGCG-AATCACTCTGATTGCTGTCGCTGTGGTATATAGACGTCGTGAGTGGCGT---GAACGCT--TTGG-----------------------------------------------------------------------T-------------------------------GTCTGTTGCA--AGGATA--------------TAACAACTGGG------------------GA-TTTTCTG------------TATTTTAGTAGTGCTG-C-CC------------------------------CAA-C-AATCTCAAC--AATCTTAAGCCAAAATGTGTGAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

TGGGAT--------GGGG--CTTA--GGAATGGGCCGGGGCATAGAATGGAGAGGAATGGTGGGGATAGGGGTGCAGATGGGGGTGAAGATGGGGGGAGCGGGACAGAACTTATTTAAATGCGGTGGACAGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCC-TGTCCACCAATCCG-----------------------------------------------------------------------TA-A---------CCGTA-------ACC-G-AATCCGTA------GGATAA---------------------------------------------CTATCTG------------TATCCTTGTAGTGATTGCTCC---------------GAACCG-------CCGAACC------------TAA-CCCAAACAAAATGTGTGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................GATTGCTGTCGCTGTTGGAT.........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCC---------------GAACCG-------CCGAACC------------.......................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................G-AATCACTCTGATTGCTGTCGCT................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................ATTTACACGTCGTGAGTGCCGCC-TG.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CC---------------GAACCG-------CCGAACC------------TAA-CCCAAA.............	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TTGGATTTACACGTCGTGAGT..........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTGATTGCTCC---------------GAACCG-------..........................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................ATTTACACGTCGTGAGTGCCGCC-...................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droBip1

TGGGCC--------TGGG--CATG--GGAATG-GCAGGGGC-----------------GGTGGGTAAAGGGGA-CAGATGGGGGTGAAGATGGGGGGAGCGGGACAGAACTTATTTAAATGCGGTGGATAGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGCCGCC-TGTCCACCAATCCG-----------------------------------------------------------------------TA-A---------CCGTA-------ACC-G-AATCCGTA------GGATAA---------------------------------------------CTGTCTG------------AATCCTTGTAGTGATTGCTCC---------------GAACCG-------CCAAACC------------TAA-CCCAAACAAAATGTGTGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGGAG--------A--G--CTTG--GGAT--------------------------------------------------------------------CTCGGACAGAACTTATTTAAATGCGGCTGCCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGTCATT---------------GGG-------------------------------------------------------------------------------------------------ATTATTAGGACCAGGATAA---CCAAAGGATATA-------CAT-----------------------------------------------------------------------------------------------------------A-----AACTA--AAAATATAAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------CA-A------------------------------CCGCAGA---AGGATAA---C-------------------------------------CGCTCTGTCTG------------AATCCTTGTAGTGCCTT--GTAGTGCCGCTCCACTCCACTCCGCTCGAACCGAACC------------GAA-CTAACCAAACATGTGTGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGGGC--------T-------GGCGGGGG--------------------------------------------------------------------CTGGGACAGAACTTATTTAAATGCAGCGGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGTCTTGTCCGCACATCCG-----------------------------------------------------------------------CACAT--------CCGCA-----CAATC-GCAACTTGCAGAA--AGGATAA---C----------------CAG------------------CGATCTCTCTG------------TGTCCTTATAGTGTCGCCCCC------------------------------GAACC-AAAACCAAC---AA-CTAACCGAGAATGTGTGAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGGGGC---------------TGGCGGA----------------------------------------------------------------------CAGGGACAGAGCTTATTTAAATGCAGCTGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------T----------------A--------------ACTTGCAGAA--AGGATAA---C-------------------------------------CGATCTGTCTGTAAATAG-----TATCCTTGTAGTGCCG-C-CC------------------------------GAACC------------AAA-CTAGCCAAAAATGTGTGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGG---------------------CGGG----------------------------------------------------------------------CCGGGACAAAACTTATTTAAATGCAGATGTCGGAGCCCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCCGTCCGCACATCCG-----------------------------------------------------------------------CA-AT--------CCGTA-------TCC-GTAGTTCGCAGGA--AGGATAA---C-------------------------------------CGATCTGTCTG------------TATCCTTGCAGTGCCG-C--C------------------------------GAGCC------------AAA-CTAGCCTAGAATGTGTGAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGGGGC---------------TTGCGGG----------------------------------------------------------------------CCGGGACAGAACTTATTTAAATGCAGATGTCGGAGCGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------TC-AT--------CCGTA-------------CATCCGCAGGA--AGGATAA---C-------------------------------------CGATCTATCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GAACC------------AAA-CTAACCAAGAATGTGTGAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAGGGC--------CAC----------G----------------------------------------------------------------------ACGGGACAGAACTTATTTAAATGCAGCTGTCGGAGTGCAGAACG-AATCACTCTGATTGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCACATCCG-----------------------------------------------------------------------AA-AT--------CCGTA-------ATCCGTAGTCCGCTAAA--GGGATAA---C-------------------------------------CGATCTCTCTG------------TATCCTTGTAGTGCCG-CCCC------------------------------GAACC------------AAA-CTAACCAAACATGTGTGAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCATAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTAGTCTTGTCCGCCCATCCG-----------------------------------------------------------------------AA-AT--------CCGTA--------------ACCCGCATAA--GGGATAA---C-------------------------------------CGATCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------AAA-CTAACCAAACATGTGTGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................ACTCTGATCGCTGTCGCTG...............................................................................................................................................................................................................................................................................................................................	19	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCTGATCGCTGTCGCTGT..............................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCTGATCGCTGTCGCTGTTGGATT........................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................G-AATCACTCTGATCGCTGTCGCTG...............................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATTTACACGTCGTGAGTG.........................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATCACTCTGATCGCTGTCGCTGTTGG...........................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTGTCGCTGTTGGATTTACACG..................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCTGATCGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATTTACACGTCGTGAGTGT........................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CGCTGTTGGATTTACACGTCGTGAG...........................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................AATCACTCTGATCGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................................................................GTCTG------------TATCCTTGTAGTGCCG-..........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCTGATCGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AGTCTTGTCCGCCCATCCG-----------------------------------------------------------------------AA-AT--------CCGT.............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGTTGGATTTACACGTCT...............................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCTTGTCCGCCCATCCT-----------------------------------------------------------------------AA-AT--------CCGTA--------------ACCCGCATAA--GGGATAA---C-------------------------------------CGTTCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------AAA-CTAACCAAACATGTGTGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................ATTTACACGTCGTGAGTGTCGCCTT..................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATTTACACGTCGTGAGTGTCGCC....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GCTGTTGGATTTACACGTCT...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCCGGAGCGCAGAACG-AATCACTCTGATC.........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCTGATCGCTGTCGCTGTTGGATT........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCTGATCGCTGTCGCTGTTGG...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CGCTGTTGGATTTACACG..................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CTGTTGGATTTACACGTC................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ATTTACACGTCGTGAGTGTCGCCT...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGCCGGAGCGCAGAACG-AATCACTCT.............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCTGATCGCTGTCGCTGTTGG...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGG---------------------CGGG----------------------------------------------------------------------GCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCTTGTCCGCCCATCCT-----------------------------------------------------------------------AA-AT--------CCGTA--------------ACCCGCATAA--GGGATAA---C-------------------------------------CGTTCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------AAA-CTAACCAAACATGTGTGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................................................................................................................................................................A---C-------------------------------------CGTTCTGTCTG------------TATCCTTGTAGT...............................................................................	25	1	1.00	1	0	1	0	0
.....................................................................................................................AATGCAGCTGCCGGAGCGCA............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.......................................................................................................................................................TGATCGCTGTCGCTGTTGGATT........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................ATCCT-----------------------------------------------------------------------AA-AT--------CCGTA--------------ACCCGCA.......................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................GTGAGTGTCGCCTTGTCCGCCCA.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
..........................................................................................................................................................................ATTTACACGTCGTGAGTG.........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
.................................................................................................................................................................CGCTGTTGGATTTACACGTCGTGAGTG.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1

droYak3

CGGGCC--------GGCGGACCGGCGGG----------------------------------------------------------------------CCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCTTGTCTGCCCATCCG-----------------------------------------------------------------------AA-AT--------CCGTA--------------ATTCGTATAA--GGGATAA---C-------------------------------------CAATCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GTACC------------AAA-CTAACCAAACATGTGTGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................ACTCTGATCGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCTGATCGCTGTCGCTGT..............................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GATCGCTGTCGCTGTTGGATTT.......................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................CGCTGTCGCTGTTGGATTT.......................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CTGATCGCTGTCGCTGTTGGAT.........................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCTGATCGCTGTCGCT................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GTCGCTGTTGGATTTACAC...................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GCTGTTGGATTTACACGTC................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCTGATCGCTGTCGCTGTT.............................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GTCGCTGTTGGATTTACA....................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTGTCGCTGTTGGATTTACACGTC................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TCGCTGTCGCTGTTGGATTTACA....................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGTCGCTGTTGGATTTACAC...................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGTCGCTGTTGGATTTACACGTC................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................TCGCTGTCGCTGTTGGATTT.......................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GCTGTCGCTGTTGGATTTACAC...................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TCACTCTGATCGCTGTCGCTGT..............................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................C-------------------------------------CAATCTGTCTG------------TATCCTTGTAG................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GATCGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GATCGCTGTCGCTGTTGG...........................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TCTGATCGCTGTCGCTGTT.............................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CTGATCGCTGTCGCTGTTGGATT........................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TCGCTGTCGCTGTTGGATTTA......................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GATCGCTGTCGCTGTTGGATTTACA....................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GTCGCTGTTGGATTTACACGT.................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TCGCTGTCGCTGTTGGAT.........................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCTGATCGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGTTGGATTTACACGTCTGC.............................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CGGGCC--------GGCGGACCGGCGGG----------------------------------------------------------------------CCGGGACAGAACTTATTTAAATGCAGCTGCCGGAGCGCAGAACG-AATCACTCTGATCGCTGTCGCTGTTGGATTTACACGTCGTGAGTGTCGCCCTGTCCGCCCATCCG-----------------------------------------------------------------------AA-AT--------CCGTAGTCCGTAATC-GTAATCCGTATAA--GGGATAA---C-------------------------------------C-CTCTGTCTG------------TATCCTTGTAGTGCCG-C-CC------------------------------GCACC------------GAA-CTAACCAAACATGTGTGAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................GTCGCTGTTGGATTTACACG..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................CGCTGTCGCTGTTGGATTTA......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................ACTCTGATCGCTGTCGCTGTTGGATT........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................CGCTGTCGCTGTTGGATTTACACGT.................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................CCCATCCG-----------------------------------------------------------------------AA-AT--------CCGTAG...........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................CTCTGATCGCTGTCGCTGTTGGAT.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................GATCGCTGTCGCTGTTGGA..........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................TCGCTGTCGCTGTTGGAT.........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................GCTGTCGCTGTTGGATTTACACGT.................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................GCTGTTGGATTTACACGTCGTGA............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................G-C-CC------------------------------GCACC------------GAA-CTAACCAAAC.........	22	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................TCGCTGTCGCTGTTGGATTTACAC...................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0

dpe_1697

scaffold_45:432441-432591 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.5	-34.4	-34.2