ID:

dpe_169

 Coordinate:

scaffold_4:4590354-4590418 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.6 -27.6 -27.6

Flybase annnotation

utr3 [utr3_minus_2567]

No Repeatable elements found

Sense Strand Reads

CACCGGGAAATGCAACACGAACACACACAGAAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACTGGATAACAACGAGCGTGCAGTGAATC

***********************************...((((((((((.((.((((((((.(((((..((((((((...............))))))))))))))))))))).)).))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V050

head

 V057

head

 V111

male body		 M021

embryo

 M042

female body

 V042

embryo
..................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................ 23 0 1 11561.00 11561 5629 5135 659 52 73 13
..................................................TAAAGTAAATAGTCTGGATTGATG........................................................................................... 24 0 1 10084.00 10084 4453 3527 1396 546 67 95
..................................................TAAAGTAAATAGTCTGGATTGA............................................................................................. 22 0 1 4994.00 4994 2179 2170 575 26 43 1
..................................................TAAAGTAAATAGTCTGGATTGATGA.......................................................................................... 25 0 1 3907.00 3907 1664 1435 675 45 26 62
...................................................AAAGTAAATAGTCTGGATTGAT............................................................................................ 22 0 1 1471.00 1471 674 702 78 2 15 0
..................................................TAAAGTAAATAGTCTGGATTG.............................................................................................. 21 0 1 1261.00 1261 549 625 64 0 23 0
...................................................AAAGTAAATAGTCTGGATTGATG........................................................................................... 23 0 1 1128.00 1128 524 365 174 39 15 11
...................................................AAAGTAAATAGTCTGGATTGATGA.......................................................................................... 24 0 1 434.00 434 183 152 80 3 6 10
...................................................AAAGTAAATAGTCTGGATTGA............................................................................................. 21 0 1 418.00 418 160 199 50 1 8 0
..................................................TAAAGTAAATAGTCTGGATTGATGT.......................................................................................... 25 1 1 321.00 321 128 105 87 0 0 1
..................................................TGAAGTAAATAGTCTGGATTGATG........................................................................................... 24 1 1 249.00 249 101 109 34 4 1 0
..................................................TAAAGGAAATAGTCTGGATTGAT............................................................................................ 23 1 1 245.00 245 58 186 1 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGATGAA......................................................................................... 26 0 1 229.00 229 79 83 66 0 0 1
..................................................TGAAGTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 220.00 220 86 111 20 0 3 0
...................................................AAAGTAAATAGTCTGGATTGATGAA......................................................................................... 25 0 1 161.00 161 55 61 40 1 0 4
..................................................TGAAGTAAATAGTCTGGATTGATGA.......................................................................................... 25 1 1 142.00 142 55 54 32 0 0 1
..................................................TAAAGCAAATAGTCTGGATTGAT............................................................................................ 23 1 1 105.00 105 39 65 1 0 0 0
..................................................TAAAGGAAATAGTCTGGATTGATG........................................................................................... 24 1 1 101.00 101 27 73 0 1 0 0
..................................................TAAAGGAAATAGTCTGGATTGA............................................................................................. 22 1 1 101.00 101 27 73 1 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGATT........................................................................................... 24 1 1 93.00 93 35 52 2 4 0 0
...................................................AAAGTAAATAGTCTGGATTG.............................................................................................. 20 0 1 90.00 90 29 49 5 0 7 0
..................................................TAAAGGAAATAGTCTGGATTGATGA.......................................................................................... 25 1 1 70.00 70 17 47 5 0 0 1
..................................................TGAAGTAAATAGTCTGGATTGA............................................................................................. 22 1 1 67.00 67 24 29 13 0 1 0
..................................................TAAAGCAAATAGTCTGGATTGATG........................................................................................... 24 1 1 58.00 58 24 34 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGCTG........................................................................................... 24 1 1 57.00 57 17 39 1 0 0 0
..................................................TAAAGTAAATAGTCTGGATTTATG........................................................................................... 24 1 1 54.00 54 20 32 1 0 0 1
..................................................TAAAGTAAATAGTCTGGATTGCT............................................................................................ 23 1 1 53.00 53 23 30 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGATA........................................................................................... 24 1 1 49.00 49 19 24 4 0 2 0
..................................................TAAAGTAAATAGTCTGGCTTGAT............................................................................................ 23 1 1 42.00 42 12 30 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGTT............................................................................................ 23 1 1 39.00 39 9 30 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATT............................................................................................... 20 0 1 37.00 37 13 13 0 5 5 1
..................................................TAAAGTAAATAGCCTGGATTGAT............................................................................................ 23 1 1 37.00 37 17 20 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................ 23 1 1 35.00 35 18 16 1 0 0 0
...................................................AAAGTAAATAGTCTGGATTGATGT.......................................................................................... 24 1 1 34.00 34 15 11 8 0 0 0
..................................................TAAAGAAAATAGTCTGGATTGAT............................................................................................ 23 1 1 33.00 33 15 17 1 0 0 0
..................................................TAAAGCAAATAGTCTGGATTGA............................................................................................. 22 1 1 31.00 31 9 20 2 0 0 0
..................................................TAAAGTAAATAGTCTGGAGTGATG........................................................................................... 24 1 1 29.00 29 7 21 0 0 0 1
..................................................TAAAGTAAATAGGCTGGATTGATG........................................................................................... 24 1 1 27.00 27 6 18 0 3 0 0
..................................................TAAAGTAAATAGTCTGGATTGATTA.......................................................................................... 25 1 1 27.00 27 11 15 0 0 0 1
..................................................TAAAGTAAATAGGCTGGATTGAT............................................................................................ 23 1 1 26.00 26 1 25 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTG.............................................................................................. 21 1 1 26.00 26 2 24 0 0 0 0
..................................................TAAAGTAGATAGTCTGGATTGAT............................................................................................ 23 1 1 25.00 25 8 16 1 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGT............................................................................................. 22 1 1 24.00 24 8 16 0 0 0 0
..................................................TAAAGTAAATAGTCTGGGTTGATG........................................................................................... 24 1 1 24.00 24 7 11 3 2 0 1
..................................................TAAGGTAAATAGTCTGGATTGATG........................................................................................... 24 1 1 24.00 24 10 9 4 0 0 1
..................................................TAAAGCAAATAGTCTGGATTGATGA.......................................................................................... 25 1 1 23.00 23 11 11 1 0 0 0
..................................................TAAAGTAAATAGTCTGGTTTGAT............................................................................................ 23 1 1 22.00 22 5 17 0 0 0 0
..................................................TAAAGTAAATAGACTGGATTGAT............................................................................................ 23 1 1 22.00 22 5 15 1 0 1 0
..................................................TAAAGTAAATAGTCTGGATTTAT............................................................................................ 23 1 1 22.00 22 7 15 0 0 0 0
..................................................TAAAGTAAATAGTCTGCATTGAT............................................................................................ 23 1 1 22.00 22 6 15 1 0 0 0
..................................................TAAAGTAAATAGTCTAGATTGATG........................................................................................... 24 1 1 22.00 22 18 4 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGATC........................................................................................... 24 1 1 20.00 20 9 11 0 0 0 0
..................................................TAAAGTAAGTAGTCTGGATTGAT............................................................................................ 23 1 1 20.00 20 8 10 2 0 0 0
..................................................TAAAGTAAATAGTCTGGATCGAT............................................................................................ 23 1 1 20.00 20 7 12 0 0 0 1
..................................................TAAAGTAAATAGTCTGGATCGATG........................................................................................... 24 1 1 19.00 19 8 11 0 0 0 0
..................................................TAAAGTAAATAGGCTGGATTGA............................................................................................. 22 1 1 19.00 19 5 14 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGATGG.......................................................................................... 25 1 1 19.00 19 0 5 0 14 0 0
..................................................TAAAGTAAATAGTCTGGACTGATG........................................................................................... 24 1 1 18.00 18 4 13 0 0 0 1
..................................................TAAAGTAAATAGTCTGGCTTGATG........................................................................................... 24 1 1 18.00 18 5 13 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGCTGA.......................................................................................... 25 1 1 18.00 18 6 12 0 0 0 0
..................................................TAAAGAAAATAGTCTGGATTGA............................................................................................. 22 1 1 18.00 18 11 7 0 0 0 0
..................................................TAAAGAAAATAGTCTGGATTGATG........................................................................................... 24 1 1 18.00 18 10 7 1 0 0 0
..................................................TAAAGCAAATAGGCTGGATTGAT............................................................................................ 23 2 1 18.00 18 2 16 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTGCT............................................................................................ 23 2 1 17.00 17 5 12 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGGT............................................................................................ 23 1 1 17.00 17 4 13 0 0 0 0
..................................................TAAAGGAAATAGTCTGGAGTGATG........................................................................................... 24 2 1 17.00 17 3 14 0 0 0 0
..................................................TAAAGTAAATAGCCTGGATTGATG........................................................................................... 24 1 1 16.00 16 5 11 0 0 0 0
..................................................TAAAGTGAATAGTCTGGATTGAT............................................................................................ 23 1 1 16.00 16 7 9 0 0 0 0
..................................................TAAAGTAAATAGTATGGATTGAT............................................................................................ 23 1 1 16.00 16 3 12 1 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGC............................................................................................. 22 1 1 16.00 16 5 11 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGTTG........................................................................................... 24 1 1 15.00 15 3 12 0 0 0 0
..................................................TAAAGTAAATAGACTGGATTGATG........................................................................................... 24 1 1 15.00 15 3 10 2 0 0 0
..................................................TAAGGTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 15.00 15 4 9 1 0 1 0
..................................................TAAAGTAAATAGTCTGGATTTA............................................................................................. 22 1 1 15.00 15 3 12 0 0 0 0
.................................................CTAAAGTAAATAGTCTGGATTGAT............................................................................................ 24 1 1 15.00 15 6 8 0 0 1 0
..................................................TAAAGTAAATAGTCTGCATTGATG........................................................................................... 24 1 1 15.00 15 7 7 0 0 1 0
..................................................TAAGGTAAATAGTCTGGATTGATGA.......................................................................................... 25 1 1 14.00 14 6 7 1 0 0 0
..................................................TAAAGTAAATAGTCTAGATTGAT............................................................................................ 23 1 1 14.00 14 11 3 0 0 0 0
.................................................CTAAAGTAAATAGTCTGGATTGATG........................................................................................... 25 1 1 14.00 14 4 8 0 2 0 0
..................................................TAAAGTAAATAGTCTGGATTCATG........................................................................................... 24 1 1 14.00 14 3 9 2 0 0 0
.....................................................AGTAAATAGTCTGGATTGATG........................................................................................... 21 0 1 14.00 14 8 6 0 0 0 0
..................................................TAAAGTAAATAGCCTGGATTGA............................................................................................. 22 1 1 14.00 14 6 7 0 0 1 0
..................................................TAAAGTAAATAGTCTGGGTTGA............................................................................................. 22 1 1 14.00 14 3 10 1 0 0 0
..................................................TAAAGTAGATAGTCTGGATTGATG........................................................................................... 24 1 1 14.00 14 5 7 2 0 0 0
..................................................TGAAGTAAATAGTCTGGATTG.............................................................................................. 21 1 1 14.00 14 4 8 1 0 1 0
..................................................TAAAGTAAGTAGTCTGGATTGATG........................................................................................... 24 1 1 14.00 14 2 4 1 1 6 0
..................................................TAGAGTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 13.00 13 6 5 2 0 0 0
..................................................TAAAGTAAATAGTCTGTATTGAT............................................................................................ 23 1 1 13.00 13 3 10 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTCAT............................................................................................ 23 1 1 13.00 13 4 9 0 0 0 0
..................................................TAAAGTAAATAGTCTCGATTGAT............................................................................................ 23 1 1 12.00 12 3 9 0 0 0 0
...................................................AAAGTAAATAGGCTGGATTGAT............................................................................................ 22 1 1 12.00 12 2 10 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................ 23 1 1 12.00 12 2 8 0 2 0 0
..................................................TAAAGTAAATAGTCTGGGTTGAT............................................................................................ 23 1 1 12.00 12 2 10 0 0 0 0
.....................................................AGTAAATAGTCTGGATTGATGA.......................................................................................... 22 0 1 12.00 12 2 5 4 0 0 1
..................................................TAAAGTAAATAGTCTGAATTGAT............................................................................................ 23 1 1 12.00 12 8 4 0 0 0 0
..................................................CAAAGTAAATAGTCTGGATTGATG........................................................................................... 24 1 1 12.00 12 4 6 1 1 0 0
..................................................TAAAGTAAATAGTCTTGATTGAT............................................................................................ 23 1 1 12.00 12 1 10 1 0 0 0
..................................................TGAAGTAAATAGTCTGGATTGATGT.......................................................................................... 25 2 1 12.00 12 4 5 3 0 0 0
..................................................TAAAGTAAATAGTCTGGCTTGA............................................................................................. 22 1 1 12.00 12 5 7 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGATGC.......................................................................................... 25 1 1 11.00 11 8 1 2 0 0 0
....................................................AAGTAAATAGTCTGGATTGAT............................................................................................ 21 0 1 11.00 11 8 3 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGG............................................................................................. 22 1 1 11.00 11 1 9 0 0 1 0
..................................................TAAAGTAAATAGTCTGGAGTGAT............................................................................................ 23 1 1 11.00 11 3 8 0 0 0 0
..................................................TAAAGTAAATATTCTGGATTGAT............................................................................................ 23 1 1 11.00 11 0 11 0 0 0 0
..................................................TAAAGGAAATAGTCTGGGTTGAT............................................................................................ 23 2 1 11.00 11 2 9 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTTATG........................................................................................... 24 2 1 10.00 10 1 9 0 0 0 0
..................................................TAACGTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 10.00 10 1 9 0 0 0 0
..................................................TGAGGTAAATAGTCTGGATTGATG........................................................................................... 24 2 1 10.00 10 3 4 3 0 0 0
..................................................TAAAGTAAATAGTCGGGATTGAT............................................................................................ 23 1 1 10.00 10 3 7 0 0 0 0
...................................................AAAGAAAATAGTCTGGATTGAT............................................................................................ 22 1 1 10.00 10 2 8 0 0 0 0
..................................................TAAAGCAAATAGTCTGGATTG.............................................................................................. 21 1 1 10.00 10 4 6 0 0 0 0
.................................................CTAAAGTAAATAGTCTGGATTGATGA.......................................................................................... 26 1 1 10.00 10 4 6 0 0 0 0
..................................................TAAAGCAAATAGCCTGGATTGAT............................................................................................ 23 2 1 9.00 9 3 6 0 0 0 0
..................................................TAAAGTAAATAGTCTGGCTTG.............................................................................................. 21 1 1 9.00 9 3 6 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGGTG........................................................................................... 24 1 1 9.00 9 2 6 1 0 0 0
...................................................GAAGTAAATAGTCTGGATTGAT............................................................................................ 22 1 1 9.00 9 4 3 2 0 0 0
..................................................TAAAGGAAATAGTCTGGATTGTT............................................................................................ 23 2 1 9.00 9 1 8 0 0 0 0
..................................................TAAAGTAAATACTCTGGATTGATG........................................................................................... 24 1 1 9.00 9 5 3 1 0 0 0
...................................................AAAGGAAATAGTCTGGATTGAT............................................................................................ 22 1 1 9.00 9 2 7 0 0 0 0
..................................................TAAAGGAAATAGTCTGCATTGAT............................................................................................ 23 2 1 9.00 9 3 6 0 0 0 0
..................................................TAAAGTAAATAGTCTCGATTGATG........................................................................................... 24 1 1 9.00 9 3 6 0 0 0 0
..................................................CAAAGTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 9.00 9 5 4 0 0 0 0
..................................................TAAAGTGAATAGTCTGGATTGATG........................................................................................... 24 1 1 9.00 9 5 3 1 0 0 0
..................................................TGAGGTAAATAGTCTGGATTGATGA.......................................................................................... 25 2 1 9.00 9 1 5 3 0 0 0
.............................................................................................CATCAACAGGCATTTACTTCAA.................................................. 22 0 1 9.00 9 2 6 0 0 1 0
..................................................TAAAGTAAATAGTCTGGATTAATG........................................................................................... 24 1 1 9.00 9 5 4 0 0 0 0
..................................................TAAAGTAAATAGTCTGGAT................................................................................................ 19 0 1 9.00 9 0 4 0 5 0 0
..................................................TAAAGTAAACAGTCTGGATTGAT............................................................................................ 23 1 1 9.00 9 6 3 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTTATGA.......................................................................................... 25 1 1 9.00 9 3 6 0 0 0 0
...................................................AAAGTAAATAGTCTGGCTTGAT............................................................................................ 22 1 1 8.00 8 4 4 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGACG........................................................................................... 24 1 1 8.00 8 6 2 0 0 0 0
..................................................TAAAGTAAATGGTCTGGATTGATG........................................................................................... 24 1 1 8.00 8 4 2 2 0 0 0
..................................................TAAAGTAAATAGTCTGGATTAAT............................................................................................ 23 1 1 8.00 8 6 2 0 0 0 0
..................................................TAAAGTAATTAGTCTGGATTGAT............................................................................................ 23 1 1 8.00 8 2 6 0 0 0 0
..................................................TAAAGGAAATAGTCTGGAGTGATGA.......................................................................................... 25 2 1 8.00 8 2 6 0 0 0 0
...................................................GAAGTAAATAGTCTGGATTGATG........................................................................................... 23 1 1 8.00 8 4 4 0 0 0 0
.....................................................AGTAAATAGTCTGGATTGAT............................................................................................ 20 0 1 8.00 8 2 5 0 0 1 0
..................................................TAAAGTAAACAGTCTGGATTGA............................................................................................. 22 1 1 8.00 8 4 4 0 0 0 0
..................................................TAAAGTAAATCGTCTGGATTGAT............................................................................................ 23 1 1 8.00 8 5 3 0 0 0 0
..................................................TAAAGTAAAGAGTCTGGATTGAT............................................................................................ 23 1 1 8.00 8 1 7 0 0 0 0
..................................................TAAAGTAAATAGTCTGCATTGATGA.......................................................................................... 25 1 1 8.00 8 5 3 0 0 0 0
..................................................TAAAGAAAATAGTCTGGATTGATGA.......................................................................................... 25 1 1 8.00 8 3 5 0 0 0 0
..................................................TAAAGTAAATAGTCTAGATTGA............................................................................................. 22 1 1 8.00 8 6 2 0 0 0 0
..................................................TAAAGGAAAGAGTCTGGAGTGAT............................................................................................ 23 3 1 8.00 8 3 5 0 0 0 0
......................................................GTAAATAGTCTGGATTGATG........................................................................................... 20 0 1 8.00 8 4 0 4 0 0 0
..................................................TAAAGGAAATAGTCTGGATTTA............................................................................................. 22 2 1 8.00 8 1 7 0 0 0 0
..................................................TAAAGTAAATAGTCTGGTTTGA............................................................................................. 22 1 1 8.00 8 1 7 0 0 0 0
..................................................TAAAGTAAATAGACTGGATTGA............................................................................................. 22 1 1 8.00 8 0 8 0 0 0 0
..................................................TAAAGTAAATAGTCTGGACTGAT............................................................................................ 23 1 1 8.00 8 1 7 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATCGA............................................................................................. 22 1 1 8.00 8 2 2 4 0 0 0
..................................................TAAAGTAAATAGTCTGGCTTGATGA.......................................................................................... 25 1 1 8.00 8 3 5 0 0 0 0
..................................................TAAAGTAAATAGGCTGGATTG.............................................................................................. 21 1 1 8.00 8 0 8 0 0 0 0
..................................................TGGAGTAAATAGTCTGGATTGATG........................................................................................... 24 2 1 7.00 7 5 1 1 0 0 0
...................................................AAAGGAAATAGTCTGGATTGATG........................................................................................... 23 1 1 7.00 7 0 7 0 0 0 0
..................................................TAAAGTAAATAGTCTGGAGTGA............................................................................................. 22 1 1 7.00 7 1 6 0 0 0 0
..................................................TAAAGTAAATAGTCTGGACTGATGA.......................................................................................... 25 1 1 7.00 7 3 4 0 0 0 0
...................................................TAAGTAAATAGTCTGGATTGAT............................................................................................ 22 1 1 7.00 7 5 2 0 0 0 0
.............................................................................................CATCAACAGGCATTTACTTCA................................................... 21 0 1 7.00 7 0 5 0 0 0 2
..................................................TAAGGTAAATAGTCTGGATTG.............................................................................................. 21 1 1 7.00 7 2 5 0 0 0 0
..................................................TAAAGTAAATAGTTTGGATTGAT............................................................................................ 23 1 1 7.00 7 0 6 1 0 0 0
..................................................TAAAGTAAATAGCCTGGATTGATGA.......................................................................................... 25 1 1 7.00 7 4 3 0 0 0 0
....................................................AAGTAAATAGTCTGGATTGATG........................................................................................... 22 0 1 7.00 7 2 2 0 2 1 0
..................................................TAAAGTAAATAGTCTGTATTGATG........................................................................................... 24 1 1 7.00 7 3 2 1 1 0 0
..................................................TAAAGTAAATAGTCTGTATTGA............................................................................................. 22 1 1 7.00 7 1 6 0 0 0 0
..................................................TAAAGTAAATAGTCCGGATTGAT............................................................................................ 23 1 1 7.00 7 5 2 0 0 0 0
..................................................TAAAGAAAATAGTCTGGATTG.............................................................................................. 21 1 1 7.00 7 4 3 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGTTGA.......................................................................................... 25 1 1 7.00 7 0 7 0 0 0 0
...................................................AAAGTAAATAGCCTGGATTGAT............................................................................................ 22 1 1 7.00 7 2 5 0 0 0 0
..................................................TAAAGGAAATAGTCGGGATTGAT............................................................................................ 23 2 1 7.00 7 2 5 0 0 0 0
..................................................TAAAGGAAATAGTCTGGAGTGAT............................................................................................ 23 2 1 7.00 7 1 6 0 0 0 0
..................................................TAAAGCAAATAGTCTGGATTGTT............................................................................................ 23 2 1 7.00 7 2 5 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTGCT............................................................................................ 22 1 1 7.00 7 2 5 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTTATG........................................................................................... 23 1 1 7.00 7 2 4 1 0 0 0
..................................................TAAAGTAAATAGTCTGCATTGA............................................................................................. 22 1 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGGTGA.......................................................................................... 25 1 1 6.00 6 3 2 0 1 0 0
..................................................TAAAGTAAATAGTCGGGATTGA............................................................................................. 22 1 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGGAAATAGTCTGGAGTGA............................................................................................. 22 2 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGACGA.......................................................................................... 25 1 1 6.00 6 2 1 2 1 0 0
..................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................ 27 0 1 6.00 6 1 3 2 0 0 0
..................................................TAAAGTAAATAGTCTGGATTTATT........................................................................................... 24 2 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGTAAGTAGTCTGGATTGATGA.......................................................................................... 25 1 1 6.00 6 0 6 0 0 0 0
..................................................TAAAGTAACTAGTCTGGATTGATG........................................................................................... 24 1 1 6.00 6 1 5 0 0 0 0
..................................................TAGAGTAAATAGTCTGGATTGA............................................................................................. 22 1 1 6.00 6 1 5 0 0 0 0
..................................................TAAAGTAGATAGTCTGGATTGATGA.......................................................................................... 25 1 1 6.00 6 1 3 2 0 0 0
..................................................TAAAGTAAATAGTCTAGATTGATGA.......................................................................................... 25 1 1 6.00 6 5 1 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTTA............................................................................................. 21 1 1 6.00 6 3 3 0 0 0 0
..................................................TAAAGTAAATACTCTGGATTGAT............................................................................................ 23 1 1 6.00 6 3 3 0 0 0 0
..................................................TAAAGGAAATAGGCTGGATTGAT............................................................................................ 23 2 1 6.00 6 2 4 0 0 0 0
..................................................TAAATTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 6.00 6 1 5 0 0 0 0
..................................................TAAAGGAAATAGACTGGATTGAT............................................................................................ 23 2 1 6.00 6 0 6 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTGTTGA.......................................................................................... 25 2 1 6.00 6 0 6 0 0 0 0
..................................................TAAAGTAATTAGTCTGGATTGATGA.......................................................................................... 25 1 1 6.00 6 3 2 0 0 0 1
..................................................TAAAGTAAATAGTCAGGATTGATG........................................................................................... 24 1 1 6.00 6 4 2 0 0 0 0
..................................................TAAAGTAAATAGTATGGATTGATG........................................................................................... 24 1 1 6.00 6 3 3 0 0 0 0
...................................................AAGGTAAATAGTCTGGATTGAT............................................................................................ 22 1 1 6.00 6 1 5 0 0 0 0
...................................................AAAGTAAATAGCCTGGATTGATG........................................................................................... 23 1 1 6.00 6 5 1 0 0 0 0
..................................................TAGAGTAAATAGTCTGGATTGATG........................................................................................... 24 1 1 6.00 6 4 1 1 0 0 0
...................................................AAAGTAAATAGTCTGGAGTGATG........................................................................................... 23 1 1 6.00 6 1 5 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTGGT............................................................................................ 22 1 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................ 23 1 1 6.00 6 1 5 0 0 0 0
..................................................TAAAGTAAATAGTCTGGGTTG.............................................................................................. 21 1 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGTAAAAAGTCTGGATTGAT............................................................................................ 23 1 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGTAAATAGTCTGGACTGA............................................................................................. 22 1 1 6.00 6 2 3 1 0 0 0
...................................................AAAGAAAATAGTCTGGATTGATG........................................................................................... 23 1 1 6.00 6 2 4 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTGATT........................................................................................... 23 1 1 6.00 6 1 4 1 0 0 0
..................................................TAAAGTAAATAGTCTGGTTTGATG........................................................................................... 24 1 1 6.00 6 2 4 0 0 0 0
..................................................TGGAGTAAATAGTCTGGATTGAT............................................................................................ 23 2 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGGAAAGAGTCTGGATTGAT............................................................................................ 23 2 1 6.00 6 0 6 0 0 0 0
..................................................TAAAGGAAAGAGTCTGGATTGA............................................................................................. 22 2 1 6.00 6 1 5 0 0 0 0
..................................................TAAAGTAAATAGGCTGGATTGATGA.......................................................................................... 25 1 1 6.00 6 1 5 0 0 0 0
.................................................CTAAAGTAAATAGTCTGGATTGA............................................................................................. 23 1 1 6.00 6 2 4 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTGT............................................................................................. 22 2 1 5.00 5 1 4 0 0 0 0
..................................................TAAAGTAAATAGACTGGATTGATGA.......................................................................................... 25 1 1 5.00 5 2 3 0 0 0 0
..................................................TAAGGGAAATAGTCTGGATTGAT............................................................................................ 23 2 1 5.00 5 2 3 0 0 0 0
...................................................AAAGTAAATAGTCTGAATTGAT............................................................................................ 22 1 1 5.00 5 2 3 0 0 0 0
..................................................TAAAGTAAATAGTCTGGGTTGTT............................................................................................ 23 2 1 5.00 5 1 4 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTGATT........................................................................................... 24 2 1 5.00 5 1 3 0 0 0 1
..................................................TAAAGTAAATAGTCTGGATGGATG........................................................................................... 24 1 1 5.00 5 1 4 0 0 0 0
..................................................TAACGTAAATAGTCTGGATTGA............................................................................................. 22 1 1 5.00 5 1 3 1 0 0 0
..................................................TAAAGTAAATAGTCTGGAGTGATGA.......................................................................................... 25 1 1 5.00 5 3 2 0 0 0 0
..................................................TAAAGAAAATAGACTGGATTGAT............................................................................................ 23 2 1 5.00 5 4 1 0 0 0 0
..................................................TAAAGTAAATAGTCTGGAATGATG........................................................................................... 24 1 1 5.00 5 2 3 0 0 0 0
..................................................TAAAGTAAGTAGTCTGGATTGA............................................................................................. 22 1 1 5.00 5 2 0 1 0 2 0
..................................................TAAAGTAAATAGTCTGGATTAA............................................................................................. 22 1 1 5.00 5 3 2 0 0 0 0
..................................................TGAAGTAGATAGTCTGGATTGATG........................................................................................... 24 2 1 5.00 5 2 2 1 0 0 0
..................................................AAAAGTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 5.00 5 0 4 0 1 0 0
...................................................AAAGTGAATAGTCTGGATTGAT............................................................................................ 22 1 1 5.00 5 2 3 0 0 0 0
..................................................TAAATTAAATAGTCTGGATTGATG........................................................................................... 24 1 1 5.00 5 1 0 0 4 0 0
..................................................TAAAGTAAATAGTCTGGAGTG.............................................................................................. 21 1 1 5.00 5 2 3 0 0 0 0
..................................................TAAAGGAAAGAGTCTGGAGTGATG........................................................................................... 24 3 1 5.00 5 1 4 0 0 0 0
..................................................TAAAGTAAATACTCTGGATTGA............................................................................................. 22 1 1 5.00 5 4 1 0 0 0 0
..................................................TAAAGGAAATACTCTGGATTGAT............................................................................................ 23 2 1 5.00 5 2 3 0 0 0 0
..................................................TAAAGTAAATAGTCTGGA................................................................................................. 18 0 1 5.00 5 0 5 0 0 0 0
..................................................TAAAGTAAATAGTCTTGATTGATG........................................................................................... 24 1 1 5.00 5 1 1 1 2 0 0
..................................................TAAAGGAAATAGGCTGGATTGATG........................................................................................... 24 2 1 5.00 5 0 5 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTTAT............................................................................................ 23 2 1 5.00 5 1 4 0 0 0 0
..................................................TAAAGTAGATAGTCTGGATTGA............................................................................................. 22 1 1 5.00 5 1 3 1 0 0 0
..................................................TAAAGTAAATAGACTGGATTG.............................................................................................. 21 1 1 5.00 5 1 4 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTGAC............................................................................................ 22 1 1 5.00 5 1 4 0 0 0 0
..................................................TAAAGTAAATAGTCTCGATTGA............................................................................................. 22 1 1 5.00 5 0 4 1 0 0 0
..................................................TAAAGTAAATAGTCTGTATTG.............................................................................................. 21 1 1 5.00 5 2 3 0 0 0 0
..................................................TAAAGTGAATAGTCTGGATTGATGA.......................................................................................... 25 1 1 5.00 5 2 2 1 0 0 0
..................................................TAAGGTAAATAGTCTGGATTGA............................................................................................. 22 1 1 5.00 5 2 3 0 0 0 0
..................................................TAAAGTAAATGGTCTGGATTGAT............................................................................................ 23 1 1 5.00 5 3 2 0 0 0 0
..................................................TAAAGGAAATAGTCTGGTTTGAT............................................................................................ 23 2 1 5.00 5 0 5 0 0 0 0
..................................................TGAGGTAAATAGTCTGGATTGAT............................................................................................ 23 2 1 5.00 5 4 1 0 0 0 0
..................................................TAAAGTAAATAGTCTGAATTGATG........................................................................................... 24 1 1 5.00 5 1 3 1 0 0 0
..................................................TAAAGCAAATAGACTGGATTGAT............................................................................................ 23 2 1 5.00 5 0 5 0 0 0 0
..................................................TAAAGTAAATAGTATGGATTGA............................................................................................. 22 1 1 5.00 5 1 4 0 0 0 0
..................................................TAAAGTAAATAGTCTTGATTGA............................................................................................. 22 1 1 5.00 5 3 2 0 0 0 0
.......................................................TAAATAGTCTGGATTGATGA.......................................................................................... 20 0 1 5.00 5 3 0 2 0 0 0
..................................................TAAAGTAAATAGTATGGATTGATGA.......................................................................................... 25 1 1 5.00 5 2 2 1 0 0 0
..................................................TAAAGCAAATAGTCTGGATTGGT............................................................................................ 23 2 1 5.00 5 1 4 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTGATTA.......................................................................................... 24 1 1 4.00 4 1 3 0 0 0 0
..................................................TAAACTAAATAGTCTGGATTGAT............................................................................................ 23 1 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGCAAATAGCCTGGATTGATG........................................................................................... 24 2 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGCAAATAGGCTGGATTGATGA.......................................................................................... 25 2 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGAGG........................................................................................... 24 1 1 4.00 4 0 2 0 2 0 0
..................................................TAAAGGAAATAGTCTGGATTCATG........................................................................................... 24 2 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGCAAATAGTCTGGGTTGAT............................................................................................ 23 2 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGGAAATAGTCTGGAGTG.............................................................................................. 21 2 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGCAAATAGTCTGGATTGT............................................................................................. 22 2 1 4.00 4 0 4 0 0 0 0
...................................................AAAGTCAATAGTCTGGATTGATG........................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................GAAAGTAAATAGTCTGGATTGATG........................................................................................... 24 1 1 4.00 4 1 3 0 0 0 0
...................................................AAAGGAAATAGGCTGGATTGAT............................................................................................ 22 2 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGCAAATAGTCTGGAGTGATG........................................................................................... 24 2 1 4.00 4 1 3 0 0 0 0
...................................................AAAGTAAATAGTCTGGATT............................................................................................... 19 0 1 4.00 4 1 3 0 0 0 0
..................................................TGAAGTAAATAGTCTGGATTGATGAA......................................................................................... 26 1 1 4.00 4 2 1 1 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGATCA.......................................................................................... 25 1 1 4.00 4 0 4 0 0 0 0
..................................................TAAAATAAATAGTCTGGATTGAT............................................................................................ 23 1 1 4.00 4 3 1 0 0 0 0
..................................................TAAAGGAAATAGCCGGGATTGATG........................................................................................... 24 3 1 4.00 4 2 2 0 0 0 0
...................................................AAAGTGAATAGTCTGGATTGATG........................................................................................... 23 1 1 4.00 4 3 0 1 0 0 0
..................................................TAAAGTAAATAGTCTGGATTGTTGT.......................................................................................... 25 2 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGGAAATAGTCTGGGTTGATGA.......................................................................................... 25 2 1 4.00 4 0 4 0 0 0 0
..............................................................................................ATCAACAGGCATTTACTTCA................................................... 20 0 1 4.00 4 2 2 0 0 0 0
...................................................AAAGTAAATAGTCAGGATTGAT............................................................................................ 22 1 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGTAAATGGTCTGGATTGATGA.......................................................................................... 25 1 1 4.00 4 1 3 0 0 0 0
..................................................CAAAGTAAATAGTCTGGATTGA............................................................................................. 22 1 1 4.00 4 3 1 0 0 0 0
..................................................TAAAGTAAATAGTCTGGATTCA............................................................................................. 22 1 1 4.00 4 1 3 0 0 0 0
..................................................TCAAGTAAATAGTCTGGATTGATG........................................................................................... 24 1 1 4.00 4 2 2 0 0 0 0
...................................................AAAGGAAATAGTCTGGATTGA............................................................................................. 21 1 1 4.00 4 0 3 1 0 0 0
...................................................AAAGTAAATAGTCTGGACTGAT............................................................................................ 22 1 1 4.00 4 1 3 0 0 0 0
..................................................GAAAGTAAATAGTCTGGATTGATGA.......................................................................................... 25 1 1 4.00 4 0 1 3 0 0 0
...................................................AAAGCAAATAGTCTGGATTGA............................................................................................. 21 1 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGGAAAGAGTCTGGATTGATG........................................................................................... 24 2 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGTAAATAGTCAGGATTGA............................................................................................. 22 1 1 4.00 4 2 2 0 0 0 0
..................................................TAAAGGAAATAGTCTGGCTTGAT............................................................................................ 23 2 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGTAAATAGTCGGGATTGATG........................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0
...................................................AAAGAAAATAGTCTGGATTGA............................................................................................. 21 1 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGGAAATAGTCTGGATTGCTG........................................................................................... 24 2 1 4.00 4 1 3 0 0 0 0
...................................................AAAGTAAATAGTCTAGATTGAT............................................................................................ 22 1 1 4.00 4 2 2 0 0 0 0
..................................................TAAAGTAAATAGTCTGGTTTGGT............................................................................................ 23 2 1 4.00 4 0 4 0 0 0 0
..................................................TAAAGGAAATAGTCTGCATTTATG........................................................................................... 24 3 1 4.00 4 2 2 0 0 0 0
...................................................AAAGTAAATAGTCTGGATTGACG........................................................................................... 23 1 1 4.00 4 2 2 0 0 0 0
..................................................TAAAGGAAATAGTCTCGATTGAT............................................................................................ 23 2 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGTAAATCGTCTGGATTGA............................................................................................. 22 1 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGTAAATAGTCTGAATTGA............................................................................................. 22 1 1 4.00 4 2 0 2 0 0 0
..................................................TAAAGTAAATAGTCCGGATTGATG........................................................................................... 24 1 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGTAAATATTCTGGATTGATG........................................................................................... 24 1 1 4.00 4 0 3 0 1 0 0
..................................................TAAAGTAAATAGTCCGGATTGA............................................................................................. 22 1 1 4.00 4 1 3 0 0 0 0
..................................................TAAAGTAAACAGTCTGGATTGATG........................................................................................... 24 1 1 4.00 4 2 2 0 0 0 0

Anti-sense strand reads

GTGGCCCTTTACGTTGTGCTTGTGTGTGTCTTTATTACAACCTGACACGAATTTCATTTATCAGACCTAACTACTTTCAATATAAGTTCTTAAGTAGTTGTCCGTAAATGAAGTTGACGTCAAATTTGCTATACGTTGACCTATTGTTGCTCGCACGTCACTTAG

***********************************...((((((((((.((.((((((((.(((((..((((((((...............))))))))))))))))))))).)).))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V057

head
.......................................................................................TCTTAAGTAGGTTTCGGTAA.......................................................... 20 3 14 0.07 1 1
....................................................................................................TCCGTAAGGGAGGTTGACGT............................................. 20 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_4:4590304-4590468 - dpe_169 confident C----------ACCGG---------------------------GAAATGCAACACGAACACACACAG--AAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAA--C-GAGCG--TGCAGTGAA----TC----------
dp5 3:9267881-9268045 - dps-mir-987 Known_mirbase C----------ACCGG---------------------------GAAATGCAACACGAACACACACAG--AAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAA--C-GAGCG--TGCAGTGAA----TC----------
droWil2 scf2_1100000004510:853167-853370 + dwi_3 confident T----------ACATA---TAAATATATATATACATAGAGAGAGAAGGAG-------------AGATC---ATAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAAAAATGAAAAGAAAAAAAATGAAAAAAAGGATAATAA--CAGCGCG--TGCAGTGAA----TC----------
droVir3 scaffold_12875:1241619-1241797 - dvi-mir-987 Known_mirbase A----------ACCGGAAA---C---GGAAACA-------GAACGCGCG-T------------CGCTCA--CAAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAGAAGGATTC-GAA-GCGTGAAATGTG----CCAAAAAAAAAA
droMoj3 scaffold_6496:4307019-4307164 - dmo_150 confident T----------AACGG---------------------------ATATCG-----------------CGAATAAACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATATCTAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAG-------C-AGACA--AACGGTGAA----AT----------
droGri2 scaffold_15245:9744746-9744857 + dgr_34 candidate-rescued ---------------------------------------------------------------------------TGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------AAAGAA------------------GTG------------------
droAna3 scaffold_12430:12721-12858 + dan_2 confident A----------------------------------------------------------------ATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATTCAACA----------------------------GGATAATAA--C-GAGTG--CGTAGTGAA----TA----------
droBip1 scf7180000396759:441149-441309 - ACCAAGAAAAAAGCGG---------------------------------AA------------ATATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAACTCAACA----------------------------GGATAATAA--C-GAGTG--CGTAGTGAACGTTTT----------
droKik1 scf7180000302470:1981099-1981233 - A-------------------------------------------------------------------A--ACTATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCTAACGAAATGCAACT----------------------------GGATAATAA--C-GAGTG--CGCAGTGAA----AT----------
droFic1 scf7180000453851:1071713-1071858 + G------------------------------------------------GG------------CGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAATCAATA----------
droEle1 scf7180000491201:1028351-1028491 - G-------------------------------------------------C------------AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAAT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAA--C-GAGTG--CGCAGTGAA----TA----------
droRho1 scf7180000780118:109621-109765 + G-----------------------------------------------GGA------------AGATGAAAAAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAA--C-GAGTG--CGCAGTGAA----TG----------
droBia1 scf7180000301506:1519006-1519153 + G----------A--------------------------------GAACGCA------------AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAGATAA--C-GAGTG--CGCAGTGAA----TT----------
droTak1 scf7180000415401:224113-224258 - C----------AAC----------------------------------GGA------------GAATGT--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATTCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------
droEug1 scf7180000409183:843257-843400 - ------------------------------------------------GGA------------AGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA--AATT----------
dm3 chr2R:5200493-5200642 - dme-mir-987 Known_mirbase C----------------------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------
droSim2 2r:6003588-6003736 - dsi-mir-987 Known_mirbase C----------------------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----T-----------
droSec2 scaffold_1:2832494-2832645 - dse_6 confident T----------AC----------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------
droYak3 2L:17856032-17856199 - dya_3 confident A----------AGCGGAAA---C---GGAAATA-------CGAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAGTAA--C-GAGTG--CGCAGTGAT----TT---------A
droEre2 scaffold_4929:17456328-17456477 + der_2 confident C----------------------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
C----------ACCGG---------------------------GAAATGCAACACGAACACACACAG--AAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAA--C-GAGCG--TGCAGTGAA----TC----------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23111561.001156152731356295135659
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................24110084.00100845466795445335271396
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................2214994.0049942643121792170575
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2513907.00390745266216641435675
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2211471.001471215067470278
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2111261.001261023054962564
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2311128.001128391511524365174
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................241434.00434361018315280
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................211418.0041818016019950
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................251321.0032100112810587
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................261229.00229001798366
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................251161.00161104556140
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................24193.009340035522
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................20190.009007029495
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................24149.004902019244
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................20137.003755113130
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23135.003500018161
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................24134.003400015118
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22124.00240008160
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24120.00200009110
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................25119.00191400050
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22116.00160005110
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................21114.0014000860
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................23112.0012200280
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................22112.0012001254
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25111.0011000812
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................21111.0011000830
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................22111.0011010190
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................2219.009010260
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................1919.009500040
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................2018.008010250
.............................................................................................GTAAATAGTCTGGATTGATG...........................................................................................................................................2018.008000404
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................2117.007002050
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................2217.007210220
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................2716.006000132
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................2316.006000150
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................2316.006000141
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................1815.005000050
..........................................................................................AAAGTAAATAGTCTGGATTGAC............................................................................................................................................2215.005000140
..............................................................................................TAAATAGTCTGGATTGATGA..........................................................................................................................................2015.005000302
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................1914.004000130
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................2014.004000220
dp5
C----------ACCGG---------------------------GAAATGCAACACGAACACACACAG--AAATAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGATATGCAACT----------------------------GGATAACAA--C-GAGCG--TGCAGTGAA----TC----------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2416895.006895456155911052833566677052493
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................2316480.0064802025825152174159266135188
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................2213013.0030131420210327220872990765
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2512269.0022694144361073671115294118183
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2311081.0010817127422218549610588
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2111016.0010162167130173076045
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2211010.001010583122106314301214
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................211353.00353454033123124024
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................241310.0031003071727174230131
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................251190.0019006119810736085
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................231147.00147000145020000
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241123.00123150532492047
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................251115.0011504002562120012
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................261109.00109060475530007
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201103.00103038010585001
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22185.0085043348000000
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................20147.00471100130183020
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................22133.003331603173000
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................24131.0031000171111001
..........................................................................................AAAGTAAATAGTCTGGATTGAC............................................................................................................................................22125.002500025000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................24119.00190203094001
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22116.001600020140000
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24116.00160105091000
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................21115.00150801041001
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................19113.00133107020000
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23113.00130200091001
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................19111.00110500020004
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25110.00100102151000
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................2118.0080102041000
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................2217.0070111130000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................2717.0070000151000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................2616.0060000021003
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................2316.0060102020001
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................2216.0060001050000
.......................................................................................................................................TCAACAGGCATTTACTTCAAC................................................................................................2116.0060015000000
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................2116.0060110220000
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................2016.0060400020000
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................2016.0060300021000
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................2215.0051000031000
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................2215.0050100220000
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................2114.0040101020000
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................2014.0040120010000
..................................................................................................................AAGT-TATATTCAAGAATTC......................................................................................................................1914.0040111100000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................2514.0040002110000
.....................................................................................................................................CATCAACAGGCATTTACTTCAAC................................................................................................2313.0030030000000
......................................................................................................................................ATCAACAGGCATTTACTTCAACA...............................................................................................2313.0030011100000
...............................................................................................AAATAGTCTGGATTGATGA..........................................................................................................................................1913.0030000000003
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................2113.0030010200000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGTT.........................................................................................................................................2613.0030000021000
.............................................................................................GTAAATAGTCTGGATTGAT............................................................................................................................................1913.0030002010000
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................1913.0030200001000
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................2312.0020002000000
...............................................................................................AAATAGTCTGGATTGAT............................................................................................................................................1712.0020000000002
...............................................................................................AAATAGTCTGGATTGATG...........................................................................................................................................1812.0020101000000
..........................................................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................................................................2312.0020100010000
..........................................................................................AAAGTAAATAGTCTGGATTGAA............................................................................................................................................2212.0020000020000
droWil2
T----------ACATA---TAAATATATATATACATAGAGAGAGAAGGAG-------------AGATC---ATAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAAAAATGAAAAGAAAAAAAATGAAAAAAAGGATAATAA--CAGCGCG--TGCAGTGAA----TC----------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................241275455.00275455628692495392263209535
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................25163257.0063257352474283485854518
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................22136310.00363101355717030521122067
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................23129781.00297816961474612622601
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23129516.0029516196921933251849122
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2415706.00570637819132775019
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................2113770.0037701333311352388
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2613726.0037261466325432999
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2113334.0033348207859182359
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2212967.00296718422936141046
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................2511865.001865740651780
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2511661.001661681113121269
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................2211493.001493146901023
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241914.00914420242486
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................211836.00836237332591
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................201766.0076673543123
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................191641.006416410000
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241611.00611385015220
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................251593.0059350000291
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................231401.0040139000011
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................251396.003965002389
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201322.00322521220256
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................241215.0021521102191
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................221182.0018211027162
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................221178.0017812211162
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................241160.001604010155
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................271149.0014934001897
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................191145.001456700078
..........................................................................................AAAGTAAATAGTCTGGATTGG.............................................................................................................................................211138.001381360002
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................231106.001066904132
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................26198.009816031564
..........................................................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................................................................23183.00833600047
..........................................................................................AAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................24166.0066640002
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAG.........................................................................................................................................26162.0062300257
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................26162.0062900251
.........................................................................................TAAAGTAAATAGTCTGGATTATG............................................................................................................................................23158.0058000157
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................20156.00564501010
...........................................................................................AAGTAAATAGTCTGGATTGATGA..........................................................................................................................................23154.0054140148
............................................................................................AGTAAATAGTCTGGATTGATGAA.........................................................................................................................................23154.00543012723
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................22152.00525001532
..........................................................................................AAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................24152.00521300138
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................18147.0047440003
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................21144.0044110834
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................19144.0044381005
..........................................................................................AAAGTAAATAGTCTGGAT................................................................................................................................................18143.0043421000
..........................................................................................AAAGTAAATAGTCTGGATTGAC............................................................................................................................................22143.0043420001
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22141.00411620518
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................23139.00392100018
............................................................................................AGTAAATAGTCTGGATTGA.............................................................................................................................................19138.00381401023
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................23136.0036330003
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22133.0033100032
.........................................................................................TAAAGTAAATAGTCTGGAC................................................................................................................................................19133.0033330000
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................20131.0031311026
.........................................................................................TAAAGTAAATAGTCTGGATG...............................................................................................................................................20128.0028100027
...................................................................C---ATAATGTTGAACTGTGCT...................................................................................................................................................................19128.0028260011
..............................................................................................TAAATAGTCTGGATTGAT............................................................................................................................................18128.0028250012
..............................................................................................TAAATAGTCTGGATTGATGA..........................................................................................................................................20127.0027700416
.............................................................................................GTAAATAGTCTGGATTGATG...........................................................................................................................................20126.0026720017
...............................................................................................AAATAGTCTGGATTGATG...........................................................................................................................................18125.00251010014
..........................................................................................AAAGTAAATAGTCTGGATTGATC...........................................................................................................................................23124.0024000024
.......................................................................................................................................TCAACAGGCATTTACTTCAACT...............................................................................................22124.0024600018
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................20123.0023001517
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAC.........................................................................................................................................26120.0020400115
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................21119.0019100216
droVir3
A----------ACCGGAAA---C---GGAAACA-------GAACGCGCG-T------------CGCTCA--CAAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAGAAGGATTC-GAA-GCGTGAAATGTG----CCAAAAAAAAAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23114781.0014781692068178481180290350000144963240010976705852450713572001312918338118116000017600200000000100072106192244703450001150032001205358
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................24113362.00133622186246227502250146179400033817584261103124348160730022117105321110240100293013000000010000413620315284170600002167713810702452
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................2218384.0083845120631448160852320000337212153285244122616242900000676922770111000032000000000000000109353326389000000119211200121
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2513568.003568122558313112236240001021210569166711011353320000125955137701800011490100100000000000015239117329720001000021000002
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2113029.003029315013300200010000103936494125551701280000061421107000001100000000000000000001183911100000004000000001
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................231917.009172442127305060300003314113105212420000011939050000010000000000000000010152092200002002310200001
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................221898.00898815823202030600006033235141161185300000172212002000004000000000000000003003191100000000000000001
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................201581.00581945013001000000005351107035000000100000000000000000000000000020062400000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................211484.00484614021001060200001076796172000000571801000004000000000000000000001961200000001000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................241481.00481951001600016000000010020010000013395187901300000550000000000000000000041400000001000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................221349.00349733300000000000000000000000000000000000000000000000000000000009000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................261265.0026506210004210000135610791433000005207020000030000000000000000000121012800010000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................241247.00247114130020903000012731619032100000380402000003000000000000000000011911100000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241142.001420451000000000003233530050000001000000000000000000000000002203531000000001000000000
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201134.00134031800000000000740352034000000200000000020000000000000000000073800000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241101.00101057100002010000201521113000001002000000000000000000000000000113400000003000000000
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................19194.009438600000000000000000000000000000000000000000000000000000000004000000001000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................25184.008411000005020000821214005000001104000000000000000000000000000434800000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................25182.008200010103020000921412009000003304000000000000000000000000000327700000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................23179.007916614000000000000000100000000100000000000000000000000000000005000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................25151.005114200000000000000000010000000000000000000000000000000000000016000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23150.005006000000010000022511035000001121000000020000000000000000000015200000000000000000
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................21141.0041022100000000000110010000000000101000000010000000000000000000110000000000000000100
.........................................................................................TAAAGTAAATAGTCTGGATTGATCC..........................................................................................................................................25135.00352200000001000000000010000000781802000002000000000000000000000100000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22134.003405000000000000010101010000000000000000010000000000000000010023000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................18131.003101000000000000062221103100000100000000000000000000000000000002000000000000000000
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................20128.00280020000000000051243104100000010000000000000000000000000000004000000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGG.............................................................................................................................................21127.002702700000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATC...........................................................................................................................................23125.00252100000000000000000000000000653301000001000000000000000000001100000000000000010
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................20122.00220800000000000012100200000000010000000000000000000000000000006100000000000000000
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................21121.00210020000000000041113103200000120000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22119.001900000000000000000020000000000000000000000000000000000000000017000000000000000000
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................21119.00190001000000000043211001100000100000000000000000000000000000013000000000000000000
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................22119.00190010000000000050014103100000100100000000000000000000000000001000000000000000000
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................19118.001801230000000000001000000000000000000000000000000000000000000002000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................27117.00170110000000000011001000100000001000000000000000000000000000018100000000000000000
.............................................................................................GTAAATAGTCTGGATTGAT............................................................................................................................................19116.001600110000000000020010001000000000000000000000000000000000000000100000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25116.00160200000100000000011010010000000200000000000000000000000000016000000000000000000
...................................................................................................AGTCTGGATTGATGA..........................................................................................................................................15116.001600000000000000000000000000000000000000000000000000000000000000160000000000000000
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................19115.00150900000100000000010120000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................TCAACAGGCATTTACTTCAACA...............................................................................................22115.00150210000000000020113001200000100000000000000000000000000000000100000000000000000
..............................................................................................TAAATAGTCTGGATTGAT............................................................................................................................................18113.00130200000000000023020100100000000000000000000000000000000000002000000000000000000
.......................................................................................................................................TCAACAGGCATTTACTTCAA.................................................................................................20113.00130000000000000013011102200000000000000000000000000000000000002000000000000000000
...................................................................CA--CAAATGTTGAACTGTGCT...................................................................................................................................................................20113.00130200000000000000000000000000000000000000000000000000001000801000000000000000100
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................26113.00130111000000000010100100000010100100000000000000000000000000021000000000000000010
.................................................................................................ATAGTCTGGATTGATG...........................................................................................................................................16113.001300000000000000000000000000000000000000000000000000000000000000130000000000000000
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22112.00121036000000000000000000100000000000000000000000000000000000000000000000000010000
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................23112.00121800000000000000000000100000000000000000000000000000000000002000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................21111.00110100000000000000002102100000000001000000000000000000000000003000000000000000000
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................22110.00100011000001000020000001000000000000000000000000000000000000004000000000000000000
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................21110.00100010000000000010011002000000000000000000000000000000000000004000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................26110.00100000000000000010010000000000100000000000000000000000000000002500000000000000000
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................2219.0090210000000000001010000000000000200000000000000000000000000001100000000000000000
.......................................................................................................................................TCAACAGGCATTTACTTCA..................................................................................................1919.0090000000000000001102202100000000000000000000000000000000000000000000000000000000
............................................................................................AGTAAATAGTCTGGATTGA.............................................................................................................................................1918.0080400000000000000000000000000000000000000000000000000000000004000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGAC................................................................................................................................................1917.0070700000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................................................................2317.0070200000011000000000000000000010000000000000000000000000000002000000000000000000
..........................................................................................AAAGTAAATAGTCTGGAT................................................................................................................................................1817.0070700000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................2317.0070300000000000000000000000000000000000000000000000000000000013000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATCT..........................................................................................................................................2516.0060000000000000000000000000000130100000001000000000000000000000000000000000000000
.......................................................................................................................................TCAACAGGCATTTACTTCAACT...............................................................................................2216.0060000000000000020103000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAAA...........................................................................................................................................2416.0060300000000000010000001000000010000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATC...............................................................................................................................................2015.0050500000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGTCC........................................................................................................................................2715.0050000000000000000000000000000030100000001000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTC..............................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000005000000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................2415.0051400000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGACC........................................................................................................................................2714.0040000000000000000000010000000101100000000000000000000000000000000000000000000000
............................................................................................AGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2314.0040000000000000002000000000000001000000000000000000000000000001000000000000000000
droMoj3
T----------AACGG---------------------------ATATCG-----------------CGAATAAACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATATCTAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------GAAG-------C-AGACA--AACGGTGAA----AT----------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................2318346.00834645321909521918745
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2416790.0067903536311793586301579
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................2215528.0055282572120332764786
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2514314.004314124137739228435995
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2111870.001870165052210640119
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................221359.0035946067219225
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................261325.003254472186059
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................231273.0027340145142243
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................211259.0025936050153020
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................251205.00205602492083
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241168.00168611094606
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................241140.001401532162336
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201114.00114230246007
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................20178.0078160203606
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................25166.006633832020
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................24140.00402092603
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................27133.00331042404
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22130.00303051804
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23127.00273031902
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22125.00251000240
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................23120.00202041130
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................21116.00161013200
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24114.0014202118
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22110.0010103600
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25110.0010002305
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................19110.0010302401
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................21110.0010103501
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................2219.009005400
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................2019.009103401
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................2019.009302400
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................2618.008001502
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................2518.008002501
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................1918.008301400
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................2016.006102120
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................2416.006102201
.........................................................................................TAAAGTAAATAGTCTGGATTGAAA...........................................................................................................................................2416.006100401
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................2116.006301200
...........................................................................................AAGTAAATAGTCTGGATTG..............................................................................................................................................1915.005400100
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................2615.005000401
..........................................................................................AAAGTAAATAGTCTGGAT................................................................................................................................................1814.004000400
..........................................................................................AAAGTAAATAGTCTGGATTT..............................................................................................................................................2014.004004000
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................2214.004000310
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................2314.004002200
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................2113.003100200
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................1813.003001200
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAAA.......................................................................................................................................2813.003001101
..............................................................................................TAAATAGTCTGGATTGAT............................................................................................................................................1813.003001200
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................2113.003000030
.........................................................................................TAAAGTAAATAGTCTGGATTGATGTC.........................................................................................................................................2613.003000003
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAG.........................................................................................................................................2613.003001200
.......................................................................................................................................TCAACAGGCATTTACTTCA..................................................................................................1913.003102000
droGri2
---------------------------------------------------------------------------TGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACA----------------------------AAAGAA------------------GTG------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................241326.0032669257
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................251240.0024033207
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................231110.001104664
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................22156.00562630
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................26121.0021318
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................23117.001798
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................24114.001486
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2115.00514
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................2514.00404
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2213.00330
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................2612.00202
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................2312.00211
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................2412.00211
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2512.00202
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................2111.00110
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................2611.00101
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................2311.00101
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................2111.00101
...........................................................................................AAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2311.00110
........................................................................................TTAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2611.00110
...........................................................................................AAGTAAATAGTCTGGATTGATGTG.........................................................................................................................................2411.00110
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................2411.00110
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................2011.00110
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................2711.00101
droAna3
A----------------------------------------------------------------ATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATTCAACA----------------------------GGATAATAA--C-GAGTG--CGTAGTGAA----TA----------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................24135651.003565111328461741113532588
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................22121708.00217087522261962218388
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................25119827.001982737323879548418441
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23115463.0015463101121350177011078
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2313441.0034412922163603185
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................2113339.0033391720360452915
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2113218.00321846108081922171
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2213096.0030964140587872377
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2411632.00163272284241513
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2611195.00119511260341097
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................251856.008560023357764
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................251842.008420032616797
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241484.004843045514408
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201469.00469800998354
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241123.0012300083112
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................21179.00791004272
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................20165.0065210241424
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................27164.00640002161
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................26156.00560000353
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................23154.00542003247
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24153.00530003446
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22150.005020026517
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................26144.00440004139
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................24142.00420005334
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................22141.00410008231
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................21139.00390005232
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23137.00370007228
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................22133.00330003030
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22129.00290002603
.........................................................................................TAAAGTAAATAGTCTGGATTA..............................................................................................................................................21125.00250000223
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................23124.00241007016
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................25124.00240112020
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................21120.00200001019
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................19119.00190000118
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................20118.00181001016
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................22117.00170003014
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................20117.0017000719
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................22115.00150001113
...........................................................................................AAGTAAATAGTCTGGATTGATGA..........................................................................................................................................23115.00150001014
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................20114.00142001011
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................19114.0014000707
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22113.0013281002
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25113.00130002011
..........................................................................................AAAGTAAATAGTCTGGATTGT.............................................................................................................................................21112.0012000327
..........................................................................................AAAGTAAATAGTCTGGATTGAA............................................................................................................................................22111.0011000308
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................23111.0011010505
..............................................................................................TAAATAGTCTGGATTGATGA..........................................................................................................................................20110.0010010009
............................................................................................AGTAAATAGTCTGGATTGA.............................................................................................................................................19110.0010000109
....................................................................T--ACAATGTTGGACTGTGCT...................................................................................................................................................................19110.0010000505
.........................................................................................TAAAGTAAATAGTCTGGATTC..............................................................................................................................................2119.009000126
.............................................................................................GTAAATAGTCTGGATTGATG...........................................................................................................................................2018.008001007
............................................................................................AGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2318.008001007
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................1917.007000232
..........................................................................................AAAGTAAATAGTCTGGATTGC.............................................................................................................................................2117.007000304
.........................................................................................TAAAGTAAATAGTCTGGATTGATGTT.........................................................................................................................................2617.007000016
droBip1
ACCAAGAAAAAAGCGG---------------------------------AA------------ATATGT--ACAATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAACTCAACA----------------------------GGATAATAA--C-GAGTG--CGTAGTGAACGTTTT----------SizeHit CountTotal NormTotal
No Reads
droKik1
A-------------------------------------------------------------------A--ACTATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCTAACGAAATGCAACT----------------------------GGATAATAA--C-GAGTG--CGCAGTGAA----AT----------SizeHit CountTotal NormTotal
No Reads
droFic1
G------------------------------------------------GG------------CGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAATCAATA----------SizeHit CountTotal NormTotal
No Reads
droEle1
G-------------------------------------------------C------------AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAAT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAA--C-GAGTG--CGCAGTGAA----TA----------SizeHit CountTotal NormTotal
No Reads
droRho1
G-----------------------------------------------GGA------------AGATGAAAAAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTCGAACGAAATGCAACA----------------------------GGATAATAA--C-GAGTG--CGCAGTGAA----TG----------SizeHit CountTotal NormTotal
No Reads
droBia1
G----------A--------------------------------GAACGCA------------AGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAGATAA--C-GAGTG--CGCAGTGAA----TT----------SizeHit CountTotal NormTotal
No Reads
droTak1
C----------AAC----------------------------------GGA------------GAATGT--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATTCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------SizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------------------------GGA------------AGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA--AATT----------SizeHit CountTotal NormTotal
No Reads
dm3
C----------------------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................241254101.00254101000051630203214503310121900130013151161109314861800788232622411111659822834000412000000000000000000000189170130036529725853319173196121630705334720761244327531014110620336487463552184952179453843084414010000000000505251243011780200100262097418791311710230601760411697521101021651127199923538492872022226424181014614700072327000004400000013461390677127137036292135236722292201310013958030639691380171142402564391830915140516015611113242021841208744901288386425124221607614835164649919143516150999993037722825262470337511815252827101658217511021011039390622548502681214614582391673130
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................231207517.0020751700008731001041019001056000200778454191256730291311102101120140320232100060300000000000000000000069800000097163303207022672111018155211201877982620134277853461030631892229591674785124984200000001000110023003800040000010213428728918820730654294034571652003339610027464750039936819828781792350406319660000401400000014000000137768041622411381319224017401139200100002710021216806511167814552282001141901100412420160541014824616314741326128854466200063479525064304091953035361532814911419302666122467311884516182122002630020814847403151209201209050940
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................221130765.0013076500001200000000070017000310825022936113212181290110000091220111400000214100000000000000000000021400000001657038111800013163000001051003324066712210230432413192547046684490000000000000000110005022200100177497102282717342204014547289814624112953530693046069534131472993196913620001013000000000000004122361533214378741427220002130071121224439300265325933333110241792202021000200100142917759422145561115014595145931615817884980622213063584101541105706695213587221002703023523183495132238320230750920
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................25182274.00822740000118200063310100913002300301922625796453450110175427771173000116300000000000000000000159402600035212095588241647191229461681200311495749423148416353310127966304615827141148000000202010101113080821800000007106410716569801225085951401912236831011666223012801811245066815371000201400000063006000554587237840223433272238333916352001534100161890150151763226498160712399304203878511862212334100228137673862962184112535068706713730729917981194478550337352112102338571072252318233351321210279270302188314953216674734170391256110
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................21149908.0049908000030000000002010220000102810211848047510990000000100000000000003114800000000000000000000041000000000140230120002910000004100000325345231075144601692636324200000000000000000010100000000031814222422565970034260225544185102411861514331411393142050602000001010000000000000092422703295101021400000000100655961200114618331790001021810100000000100023114261484001174942371467758938213155521921023362119224600001100000000001311141611431254755000000
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................22132933.003293300003000000000100090001003131381042751805000000100010200010100000000000000000000000000050000000002230131080000210000000102000131154714105232132230135300000000000000001001000000000001347166515126917690644132885911046491117021384007365107971000000603000000020000001436352112925271746100100001202934890011062490411100034800010001000100011974441706233010731974640390855904603871542270616390233246117344000010010202919375615262421010000
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................23132212.00322120000510000006002000500000023451313276357812000002201000010001000000000000000000000000000027200000011053163137911155882106053430003278105012105912644031832217000000000000000000001000200000150144082039348303975518143314316164235598868003042242610200000030000002200000084595703310403238041000100084034477170032065830813100124390000000020000001112190505890007163321521894271882395302032213421235813504461131312100012110129852223360279207137132320
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................21116842.001684200002000000000100000000004501341241672000000000000000000000000000000000000000000000001000000000020014010000360000000000000748861270382611851421511000000000000000000002004000000320734832473240184118921551413618588214713646002510010000000000000000000006257281406011400020000000001031323700185403145000102041000001000000000306080518600071788147121432809294214070201156149610021010000000000232546398222726130420
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................24110591.001059100009100010000000190010000501310512221011002000000000010000000000000000000000000000030000000000231213906101527010050001200010030511701013511601500000000000000000010130000000015010425421221901652063142411612163493250212720165103000000400000000000000764437210263216241400001240014401918290107824403810011515000211000000000052407011250000649755773102722290183791911025127112112620303400100001202517925619694725040810
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2615544.00554400002000000100000070000001002147460000100101100030010010003010000000000000000000002000000000050117000110620000040120002061017040200181102300000000000000011000021000000000000098950560019553502730157400000330001000101000000010000002218726132030360200001100108012812000401150212101022901010000000000005211440255200046448150853529107924503510615841538202022111000022111712163716241516002620
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................2515327.0053270000400000000000000000000000000000001000000000000000000000000000000000000000000016000000000036003600000070100003001000011110800260718400000000000000001000000000000020311001810022004161170270391000270151000000000000000000000005474300102100100010000110021035420009560300000137100000000000000120000002900021831991812122294623020001581716300100010000000203431105626444233141100
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2514627.00462700002000000100000030000000001000000100000001000000022000000000000000000000000000000000000101011000001039000000000000211730150569020100000000000001011210000200000004003101141250760030580581105128400507049001100000000000001002000562719114222000220100000100450125700003411701400000195000000000010000141705035900103213634035632618368352147064725962013222000102001013666171017916020010
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................2014485.0044850000100000000010000000000124000000030000000000000000000000000000000000000000000001000000000000010000001000000000000002662309160404900000000000000000000010000000017047190581030310021490330118014124004605500000000000000000000000019217000100000000000000000005512000132530600000210000000000000000002010141000236221451391501100050000210151500000000000000006115761112000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGATC........................................................................................................................................2713945.003945000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026391305000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................2411452.00145200001000000000000000000000600000000000001000001000000000000000000000000000000000010000001022022001000090001000000000012715011100289651600000000000000000000000000000011031212171909006619011118305150400000000000000000000000033341000000000000000000100310235850004018308000061731000000000000000000000050010507254800311501000038023391000000000000000312862220000000
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................2011313.001313000000000000000000000000016010521230160000000000000000000000000000000000000000000001000000000010020000002000000000000002330101000872818000100000000000000000000000000400100481180172062952511362561400030100000000000000000000000007620000000001000000000000013000008501000002000000000000000000001001000029134161001001000090410000000000000000347740011100000
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................2211067.00106700000000000000000000000000000000000000000000000000000000000000000000000000000000100000000009001000000210000000000000116020102015071150000000000000000000000000000000002002540025004906024121110010900000000000000000000000000000000000000000000000000111300054000000004000000000000000000000203000029285595001002000010350000000000000000746321000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241951.009510000340000001100000000000010000000000000000000000000000000000000000000000000000000000000000070011020001270002000000000002050101203208000000000000000000100000000000400300131108004191182141273000201200000000000000001000000051200001100030300003200000210000038030000018000000000000000130100002000194868374021540200112007140002000000000000618338441000000
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................211756.00756000010000000000000000010002000000000000000000000000000000000000000000000000000000000000000030091000003200000000100000371401818000001000000000000000000000000000000000001114012008140120182304000001000000000000000000000000033400000000000000000000000311000014504000008900000000000000001010100220000245337660110300000117018280000000000000000176105845000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGATC........................................................................................................................................261729.007290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000516213000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................231717.007170000500000000000011000000000000000000000000000000000000000000000000000000000000000000000000100010000002000000000000000310000010208800000000000000000000000000000030009020290150016251803805510001016000000000000000000000000140010000000201000010000001600001702000003000000000000000002000001000045447071003000000060870020000000000000012440020000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................241665.0066500000000000000000000000000000000000000000000000000000000000000000000000000000000200000000005002200000020000000000000004000000100010000000000000000000000000000000100000161504101213020141000303000000000000000000000000700000000000000000000000001400001302000003500000000000000000020000300002926302001420000003708280000000000000000227774424000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................231591.005910000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000010000102020300000000000000000000000000000001000007809002705083014700000011000000000000000000000000000001000000000000000000000200000101000003000000000000000000000001000062571221100120100005046000000000000000001810000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................221559.005590000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000123233030024030294180000000000000000000000000000000000003012013000201120520001020000000000000000000000000110000000000000000000000003020002150200000200000000000000000000000000001292088001102000018031000000000000000014301000000000
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................201527.0052700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000001121000100000000000000000000000000000000000000010012130110065050250210000001500000000000000000000000000000000000000000000000000070000130100000500000000000000000000001600005964771050054000000110511000000000000000003610020000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................271499.0049900000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000001010000300000000000000200002020000100000000000000000000020000000000000081107001113114017000000100000000000000000000000000000003102010240000100000010100081302000001500000000000000000210000700008935483536530000126037001100000001000009201311000100
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................261457.0045700000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000001210401150100000000000000000000000000000000000000011150140034070160113000002000000000000000000000000000010000003014000000002002600002900000001200000000000000000010100600008734394539431210034044001000000000000004772201000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................261384.003840000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000010000021020000000000000000000000000000000000000005302000001010300000000000000000000000000000001010200000120010000633000000140000270000000900000000000000010020000700012791714053100000150311110100000000000112921030000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................241350.0035000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001000100030102100000000000000000000000000000000007005032053020901218000002700000000000000000000000011100000000000000004425000001200000201000003000000000000000010000000000099103703320000007095000000000000000005601250000100
.........................................................................................TAAAGTAAATAGTCTGGATTGATATC.........................................................................................................................................261346.003460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207139000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................231334.0033400000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000100000020104000000000000000000000000000000000001069040067010301300000014000000000000000000000000120000000010000000010300000031000010000000200000000000000000010000300013450376500410200009026000000000000000001611000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................251291.0029100001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000004000100400000000000000156350003052960000000000000000000000000000000000113202000003020200001010000000000000000000000000000000000000000000300000002010002901000001400000000000000000000000000001411735183200001013033000000000000000005110212000000
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................201245.002450000100000000000000000000010100000000000000000000000000000000000000000000000000010000000000200400001030000100000000000101010203000000000000000000000000000000000000000101405201412071120202000002100000000000000000000000000300000000000000000000000150000250100000300000000000000000000000100001078210000000000001000000000000000000700000000000
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................221236.0023600002000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001300000012000000010000002203110700000000000000000000000000000000000000200470900294905010300010800000000000000000000000000100000000000000000000000100000320100000600000000000000000000001600009871802160000001013000000000000000013410121000000
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................211223.0022300001000000000000000000000100261110000000000000000000000000000000000000000000000020000000000500800000071000000000000021000000020100000000000000000000000000000000040001621011101132701403400001014000000000000000000000000000000000000000000000000000000001400000000000000000000000000000001000042491000000000400100100000000000000100000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................251222.002220000100001000000000000000000000000000000000000000000000000000000000000000000000010000000000201500100120000010000001001010101010010000000000000000000000000000000000001010012001200080190000102000000000000000000000000000000000000000000000000000411002110020000100000000000000000000000020000111815713220100006012000000000000000002712100000100
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................221217.0021700000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000010220101121004100000000000000000000000000000000010071007001400115015000010500000000000000000000000000000100000000000000000000011000039000000060000000000000000000000000000924161600100000000000000000000000000003510000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAATC.......................................................................................................................................281216.00216000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016551000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................211212.0021200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000030010000060179000000000000000000000000000000100001411020002010101011100000000000000000000000000000000000000000000000000000510000542020000010000000000000000000000000001156101600110100003014000000000000000002300000000000
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................211211.00211000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000009000000000000000000010000020000000000000000000000000000000540000511010004901501001300000040000000000000000000000000050000000000000000000000011000001000000010000000000000000010000060000141317250123000000201500000000000000000800000000000
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................211210.00210000000000000000000000000001030000000000000000000000000000000000000000000000000001000000000040011010000600000000000000320200000406400000000000000000000000000000000000068041088273401500400060000000000000000000000001120000000000000000000002021000012040000020000000000000000001000010000141812160000000000001001000000000000000400000000000
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................221209.0020900000000000000000000000100001038010000000000000000000000000000000000000000000000100000000003003020000600000000000000200001100302100000000000000000000000000000000120001718016002803113014002010300000000000000000000000000000000000000000000000210000000130000000200000000000000000000000100008195112210000000000000000000000000000100000000100
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................221194.0019400000000000000000000000000200000000000000000010000000000000000000000000000000000000000000000012000000300000000100000110300230000000000000000000000000000000000000010012050037040202000020600000000000000000000000061030000000000000000000001001000041020000019000000000000000000200002700002611105116000001400300000000000000002800021000000
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................191163.001630000000000000000000000000030000122000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000007004007160110110007035090106000000000000000000000000101000000000000000000000000000000100000000000000000000000000000000800006041100000000000000000000000000000014300000000000
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................181152.0015200000000000000002000000000011040213000000000000000000000000000000000000000000000010000000000000000000000000000000000011000001033011010000000000000000000000000000000000020261035010001313000203000000000000000000000000000001000000000000010000000100000100000000000000000000000000000000000046720010000000001100000000000000000300000000000
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................191150.001500000000000000000000000000010541412000000000000000000000001000000000000000000000000000000000000000000010000000000000040010000014160000000000000000000000000000002000000803310441511620000010000000000000000000000000000000010000000000000000010000005000000000000000000000000000000010000322301200100003001000000000000000004500000000000
............................................................................................AGTAAATAGTCTGGATTGA.............................................................................................................................................191146.0014600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000022010001050707400030100000000000000000000000000000000000000000000000000020000012000000010000000000000000000000010000165192600000000000000000000000000000002900000000000
droSim2
C----------------------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----T-----------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................24150953.005095346851154713273223244041672533258721000
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23117578.001757814862383101212617363722180562101129102
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................22115856.0015856139993009823181138301462323052725001
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2317513.00751370422351029012752119019411000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2514534.004534215270206712424459081841524350317000
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2113295.0032951144369233619903206300520000
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................2112884.002884233874848412821110018000
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................2012532.00253219464130853200110000000
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2212520.00252023405171488310210157000
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................1912244.002244599147026159800000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................2211842.0018421754701800000000000000
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................1811599.0015995730032150600010000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................241594.00594320111740348114262512905000
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241582.005825629610000100300000
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................231509.0050949312400000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................251391.00391318135700000000300000
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241349.003493279100025140000000
..........................................................................................AAAGTAAATAGTCTGGAT................................................................................................................................................181323.00323104010221600000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................261313.003136110412108973141301800000
..........................................................................................AAAGTAAATAGTCTGGATTGG.............................................................................................................................................211292.002922838100000000000000
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................211265.002652497110210100201000
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................191220.0022016040045200000000000
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201209.0020911010228801000014000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................251179.0017954171036425111402600000
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................201109.001091003002400000000000
..........................................................................................AAAGTAAATAGTCTGGATTGAC............................................................................................................................................22184.0084804000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22176.0076760000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23173.0073690000000400000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................25173.0073612000006000112000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................27160.00601702100729040000000
............................................................................................AGTAAATAGTCTGGATTGA.............................................................................................................................................19160.0060502000800000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................................................................23160.0060580000011000000000
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................19152.0052472200000010000000
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22150.00501600003400000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................24149.0049423400000000000000
.........................................................................................TAAAGTAAATAGTCTGGAC................................................................................................................................................19145.0045450000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................23137.0037370000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................26134.0034191000228000200000
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................23131.0031310000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22130.0030291000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24128.0028250000001000200000
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................20126.0026000002600000000000
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................21124.0024000002400000000000
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................22122.0022204001001410000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................26120.0020100300005100100000
.....................................................................................................................................CATCAACAGGCATTTACTTCAAC................................................................................................23117.0017100001600000000000
.......................................................................................................................................TCAACAGGCATTTACTTCAAC................................................................................................21117.0017300001400000000000
......................................................................................................................................ATCAACAGGCATTTACTTC...................................................................................................19115.001570000800000000000
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................22114.0014111000200000000000
.....................................................................................................................................CATCAACAGGCATTTACTTC...................................................................................................20113.0013110000200000000000
..........................................................................................AAAGTAAATAGTCTGGATTGAA............................................................................................................................................22112.0012101100000000000000
.........................................................................................TAAAGTAAATAGTCTGGATC...............................................................................................................................................20112.0012120000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATG...............................................................................................................................................20111.0011110000000000000000
.....................................................................................................................................CATCAACAGGCATTTACT.....................................................................................................18111.0011100001000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25110.001091000000000000000
.......................................................................................................................................TCAACAGGCATTTACTTCA..................................................................................................19110.0010000001000000000000
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................21110.001080000200000000000
..........................................................................................AAAGTAAATAGTCTGGATTGAG............................................................................................................................................22110.001091000000000000000
...............................................................................................AAATAGTCTGGATTGATG...........................................................................................................................................18110.001090100000000000000
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................20110.0010100000000000000000
..........................................................................................AAAGTAAATAGTCTGGAC................................................................................................................................................1818.00880000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAAA...........................................................................................................................................2418.00850000000110001000
.............................................................................................GTAAATAGTCTGGATTGA.............................................................................................................................................1817.00760000000001000000
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................2116.00600000600000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................2416.00650000001000000000
.......................................................................................................................................TCAACAGGCATTTACTTCAACT...............................................................................................2216.00620000400000000000
.............................................................................................GTAAATAGTCTGGATTGAT............................................................................................................................................1916.00660000000000000000
.............................................................................................GTAAATAGTCTGGATTGATG...........................................................................................................................................2016.00660000000000000000
............................................................................................AGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2316.00600000201110100000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAAA.......................................................................................................................................2715.00510000003010000000
............................................................................................AGTAAATAGTCTGGATTG..............................................................................................................................................1815.00521000200000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAAA.......................................................................................................................................2815.00500000005000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAC.........................................................................................................................................2615.00540000001000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAC.........................................................................................................................................2515.00540000001000000000
............................................................................................AGTAAATAGTCTGGATTGG.............................................................................................................................................1915.00550000000000000000
............................................................................................AGTAAATAGTCTGGATTGAC............................................................................................................................................2014.00431000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................2414.00440000000000000000
.......................................................................................................................................TCAACAGGCATTTACTTC...................................................................................................1814.00420000200000000000
..............................................................................................TAAATAGTCTGGATTGAT............................................................................................................................................1814.00440000000000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGTT.........................................................................................................................................2614.00440000000000000000
............................................................................................AGTAAATAGTCTGGATTGATGAC.........................................................................................................................................2314.00440000000000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................2514.00430000001000000000
.........................................................................................TAAAGTAAATAGTCTGGAG................................................................................................................................................1914.00431000000000000000
.......................................................................................................................................TCAACAGGCATTTACTTCAA.................................................................................................2014.00400000400000000000
..................................................................CGA--ACAATGTTGGACTGTGTT...................................................................................................................................................................2114.00420000200000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAGA...........................................................................................................................................2414.00440000000000000000
.............................................................................................GTAAATAGTCTGGATTGATGA..........................................................................................................................................2113.00330000000000000000
................................................................GACGA--ACAATGTTGGACTGTGTT...................................................................................................................................................................2313.00330000000000000000
droSec2
T----------AC----------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................24144033.00440332112680205239090
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................22124351.002435110514505322743
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................25121777.0021777641175328717251
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23113300.0013300161104011611983
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2315644.005644502521445198
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2115345.0053459135064898
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................2112947.0029472314292773
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2412602.002602101113182163
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2212208.0022083611572050
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2611657.00165711172091330
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2511126.001126050170906
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................251704.0070426017625
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201560.0056015250520
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................211183.00183152175
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................201180.0018012170151
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241117.001170121104
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................27196.0096212973
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................24183.008314078
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23173.007325066
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................26172.007205562
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................24171.007122364
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22161.006106055
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................26150.0050010337
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22142.004203138
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................22141.004103929
............................................................................................AGTAAATAGTCTGGATTGA.............................................................................................................................................19137.003722033
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................22136.003621627
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................20134.003420032
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25131.003102326
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................22125.002502023
............................................................................................AGTAAATAGTCTGGATTGATGAA.........................................................................................................................................23125.0025011410
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................21125.002500223
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................25123.002301220
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................19120.002000218
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................21119.001913015
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................19118.001822014
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24117.001701214
..........................................................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................................................................23117.001711015
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................20115.001510014
..................................................................................................................AAGT-TGCATTCGAGAATTC......................................................................................................................19115.001500132
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................19114.001400014
..............................................................................................TAAATAGTCTGGATTGATGA..........................................................................................................................................20114.00140077
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................18114.001411012
...........................................................................................AAGTAAATAGTCTGGATTGATGA..........................................................................................................................................23112.00123117
.........................................................................................TAAAGTAAATAGTCTGGATG...............................................................................................................................................20111.001100011
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAC.........................................................................................................................................26111.00110218
.........................................................................................TAAAGTAAATAGTCTGGATTGATGTT.........................................................................................................................................26110.00100109
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................21110.00103007
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................20110.001000010
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAG.........................................................................................................................................2619.0090009
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................2319.0090009
..........................................................................................AAAGTAAATAGTCTGGATTGAA............................................................................................................................................2219.0090009
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................2218.0080026
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................2317.0071006
..........................................................................................AAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................2417.0071105
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................2316.0060105
droYak3
A----------AGCGGAAA---C---GGAAATA-------CGAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAGTAA--C-GAGTG--CGCAGTGAT----TT---------ASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................24130159.0030159237513098410783143137610012
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23116433.00164337212184222144271054641010
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................2219666.00966649361014079635183110000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2514504.0045041044116702014332181353001105
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................2313691.0036912992434472505710000
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2212016.0020168803111183862580000
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2111554.0015541606400268994680000
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................211941.00941548181064291190000
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................221717.007177091000700000
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................241456.004561372141548198300003
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241359.00359188110699730000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................261295.0029542201031182280000
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................201282.0028224260052810000
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................231264.002642490402810000
.........................................................................................TAAAGTAAATAGTCTGGAT................................................................................................................................................191223.002232220000100000
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241197.0019717000081630000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................251175.001752404616115100000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................251171.001711582122600000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................251163.00163320101289280001
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201111.0011114800196910000
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................21191.00916120062110000
..........................................................................................AAAGTAAATAGTCTGGATTGG.............................................................................................................................................21180.0080790001000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................23149.00492500041910000
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22144.0044510033500000
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22138.0038100013600000
..........................................................................................AAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................24134.0034330000100000
..........................................................................................AAAGTAAATAGTCTGGATTGAC............................................................................................................................................22133.0033330000000000
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................23130.0030230000700000
..........................................................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................................................................23130.0030241000500000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................27129.0029901031600000
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................19128.0028260000110000
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................20127.00271310011110000
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................22127.0027176001210000
..........................................................................................AAAGTAAATAGTCTGGAT................................................................................................................................................18124.0024240000000000
..........................................................................................AAAGTAAATAGTCTGGATT...............................................................................................................................................19124.0024210000300000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................26123.002371003930000
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................23123.0023101005700000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25123.0023300021800000
.........................................................................................TAAAGTAAATAGTCTGGAC................................................................................................................................................19117.0017170000000000
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................26117.001771000720000
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22117.001762801000000
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................21116.0016100051000000
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................22116.001650016400000
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................22113.001322012600000
..............................................................................................TAAATAGTCTGGATTGAT............................................................................................................................................18111.001180001110000
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAC.........................................................................................................................................26111.001130101600000
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24110.001080000200000
.........................................................................................TAAAGTAAATAGTCTGGA.................................................................................................................................................18110.001081000100000
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................24110.001000001720000
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................2019.00953001000000
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................2117.00710013200000
...........................................................................................AAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2316.00604000020000
..........................................................................................AAAGTAAATAGTCTGGAC................................................................................................................................................1816.00660000000000
...............................................................................................AAATAGTCTGGATTGATG...........................................................................................................................................1816.00660000000000
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................2115.00501102100000
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................2015.00502000300000
droEre2
C----------------------------------------GAGGAGCGGA------------AGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACGAAATGCAACA----------------------------GGAAAATAA--C-GAGTG--CGCAGTGAA----TT----------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................TAAAGTAAATAGTCTGGATTGATG...........................................................................................................................................24186227.00862274442322822332538807070
.........................................................................................TAAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................25140626.0040626114127602801179382810
.........................................................................................TAAAGTAAATAGTCTGGATTGA.............................................................................................................................................22140396.00403961841248491113366050
.........................................................................................TAAAGTAAATAGTCTGGATTGAT............................................................................................................................................23135509.003550937174447111525291480
..........................................................................................AAAGTAAATAGTCTGGATTGATG...........................................................................................................................................23110700.00107008552761742398940
.........................................................................................TAAAGTAAATAGTCTGGATTG..............................................................................................................................................2115642.0056421020654019346930
..........................................................................................AAAGTAAATAGTCTGGATTGAT............................................................................................................................................2215148.005148680490121943700
..........................................................................................AAAGTAAATAGTCTGGATTGATGA..........................................................................................................................................2414258.004258191922615139690
..........................................................................................AAAGTAAATAGTCTGGATTGA.............................................................................................................................................2113760.003760290198012634070
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2613147.0031476062148129840
..........................................................................................AAAGTAAATAGTCTGGATTGATGAA.........................................................................................................................................2511784.0017844030116016790
.........................................................................................TAAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................2511021.00102160203389540
.........................................................................................TAAAGTAAATAGTCTGGATTGATT...........................................................................................................................................241466.0046610622543740
..........................................................................................AAAGTAAATAGTCTGGATTG..............................................................................................................................................201407.0040780370183440
.........................................................................................TAAAGTAAATAGTCTGGATTGAA............................................................................................................................................231340.00340209063230
.........................................................................................TAAAGTAAATAGTCTGGATTGAC............................................................................................................................................231329.00329100003280
............................................................................................AGTAAATAGTCTGGATTGATG...........................................................................................................................................211299.002992012082770
.........................................................................................TAAAGTAAATAGTCTGGATTGATA...........................................................................................................................................241269.0026930101132420
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................271200.00200006081860
..........................................................................................AAAGTAAATAGTCTGGATTGATGAAA........................................................................................................................................261154.00154001091440
.........................................................................................TAAAGTAAATAGTCTGGATTGAG............................................................................................................................................231149.00149101001470
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAT.........................................................................................................................................261115.00115100131100
............................................................................................AGTAAATAGTCTGGATTGATGA..........................................................................................................................................221111.00111002341020
..........................................................................................AAAGTAAATAGTCTGGATTGATC...........................................................................................................................................231103.00103000001030
..........................................................................................AAAGTAAATAGTCTGGATTGATGT..........................................................................................................................................241102.0010200206940
..........................................................................................AAAGTAAATAGTCTGGATTGATT...........................................................................................................................................23198.009820431880
..........................................................................................AAAGTAAATAGTCTGGATTGATA...........................................................................................................................................23191.009100000910
...........................................................................................AAGTAAATAGTCTGGATTGATG...........................................................................................................................................22183.008340001780
.........................................................................................TAAAGTAAATAGTCTGGATTGATC...........................................................................................................................................24165.006500400610
.........................................................................................TAAAGTAAATAGTCTGGATT...............................................................................................................................................20159.005940403480
.........................................................................................TAAAGTAAATAGTCTGGATTGATGG..........................................................................................................................................25158.005820311510
.........................................................................................TAAAGTAAATAGTCTGGATTGATGC..........................................................................................................................................25154.005410202490
.....................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................21150.005010011470
..............................................................................................TAAATAGTCTGGATTGATG...........................................................................................................................................19147.004700000470
............................................................................................AGTAAATAGTCTGGATTGAT............................................................................................................................................20145.004500300420
...........................................................................................AAGTAAATAGTCTGGATTGA.............................................................................................................................................20136.003640101300
.........................................................................................TAAAGTAAATAGTCTGGATTGC.............................................................................................................................................22134.0034001500190
.........................................................................................TAAAGTAAATAGTCTGGATTGT.............................................................................................................................................22134.003410802230
.........................................................................................TAAAGTAAATAGTCTGGATTGG.............................................................................................................................................22133.003300301290
.......................................................................................................................................TCAACAGGCATTTACTTCAACA...............................................................................................22130.003020000280
............................................................................................AGTAAATAGTCTGGATTGATGAA.........................................................................................................................................23130.003000011280
...........................................................................................AAGTAAATAGTCTGGATTGAT............................................................................................................................................21130.003030303210
......................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................20130.003010000290
.....................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................22129.002911100260
...........................................................................................AAGTAAATAGTCTGGATTGATGA..........................................................................................................................................23129.002910100270
......................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................21128.002820000260
......................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................22128.002881701020
............................................................................................AGTAAATAGTCTGGATTGA.............................................................................................................................................19128.002800300250
..............................................................................................TAAATAGTCTGGATTGATGA..........................................................................................................................................20124.002400002220
.........................................................................................TAAAGTAAATAGTCTGGATTT..............................................................................................................................................21123.002300400190
...............................................................................................AAATAGTCTGGATTGATG...........................................................................................................................................18120.002010001180
.........................................................................................TAAAGTAAATAGTCTGGATTGATGAG.........................................................................................................................................26118.001800000180

Generated: 10/20/2015 at 07:45 PM