ID:

dpe_1679

 Coordinate:

scaffold_43:279714-279980 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.2 -6.9 -6.7

Flybase annnotation

CDS [Dper\GL14099-cds]; exon [dper_GLEANR_14621:1]; exon [dper_GLEANR_14621:2]; CDS [Dper\GL14099-cds]; intron [Dper\GL14099-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCAAGGAAACTCAACATTACCACTAATTAACTTGCCAGAGCTAAAGGATGTATGTACTGTAAACAATATTTATACTATAATAATATAAATATATATATATATATATATTTGCTTTCAAGGATCAGCTGACAAGTGAACAAGCTAAAGCATCGGCATCTGGGGCTCAATGGGTGTGTTCAGTAAATGTTGCTGAGTTTCGAAGCTTAGTCAAAACCCTCGTCGGTGGAGTTAAAACAATTACATGGGGTTTTTTTAATTCAAAAGTATGTTTAAAATCGATTTTTTGTTGTTGTATTTTCCCTAATATCTTTTAAAGTTTCAGATTTCTGATACAAGTCTTGTTACACAAGAAAAGCTTTTTAATCC
******************************************************************************************************************.((..((((..(((((..(((......)))......)))))))))..))...********************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body
..................................................................................................................TTCAAGGATCAGCTGACAAGTGAACAAGC................................................................................................................................................................................................................................ 29 0 1 3.00 3 0 3 0 0
...................................................................................................................................................GCATCGGCATCTGGGGCTC......................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0
..............................................................................................................................................................TAGGGCTCAATGGGTGGGTACA........................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................................TTAAAACAATTACATGGGGT...................................................................................................................... 20 0 1 1.00 1 0 0 1 0
....................................................................................................................................................................................................................................GTTAAAACAATTACATGGGGT...................................................................................................................... 21 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................TTAGTCAAAACCCTCGTCGGTGGAGTTAA...................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................ATCGGCATCTGGGGCTCAATGGGTGTGTT............................................................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0
.......................................................................................................................................................CGGCATCTGGGGCTCAATG..................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TCGGCATCTGGGGCTCAATGGGTGTG............................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
..CCAGGAAACACAACACTACCA........................................................................................................................................................................................................................................................................................................................................................ 21 3 3 0.67 2 2 0 0 0
..............................................................................................................................................................TAGGGCTCTATGGGTGGGT.............................................................................................................................................................................................. 19 3 20 0.15 3 1 0 0 2
............................................................................................................................................................................................................................................................................ATTGAAAATCGATTGTTTGTTG............................................................................. 22 3 8 0.13 1 0 0 0 1
....................................................................................................................................................................................................................................................................................TCGATTTGTTGTTGTTGTAA....................................................................... 20 2 11 0.09 1 1 0 0 0
...CAGGAAACACAACACTACCA........................................................................................................................................................................................................................................................................................................................................................ 20 3 15 0.07 1 1 0 0 0
.................................................................................................................................................................GGCTCTATGGGTGGGTACA........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1
....AGGAAACACAACACTACCAA....................................................................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

AAGTTCCTTTGAGTTGTAATGGTGATTAATTGAACGGTCTCGATTTCCTACATACATGACATTTGTTATAAATATGATATTATTATATTTATATATATATATATATATAAACGAAAGTTCCTAGTCGACTGTTCACTTGTTCGATTTCGTAGCCGTAGACCCCGAGTTACCCACACAAGTCATTTACAACGACTCAAAGCTTCGAATCAGTTTTGGGAGCAGCCACCTCAATTTTGTTAATGTACCCCAAAAAAATTAAGTTTTCATACAAATTTTAGCTAAAAAACAACAACATAAAAGGGATTATAGAAAATTTCAAAGTCTAAAGACTATGTTCAGAACAATGTGTTCTTTTCGAAAAATTAGG
*********************************************************************************************************************************************************************************************************.((..((((..(((((..(((......)))......)))))))))..))...****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
..GGTCCTTTGTGTTGTGATGGT........................................................................................................................................................................................................................................................................................................................................................ 21 3 3 1.33 4 2 2
..GGTCCTTTGTGTTGTGATGG......................................................................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 1 0
.................AATGGTGATTCGATGAACG........................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_43:279664-280030 - dpe_1679 TT-CAAGGAAAC-T---CAACATTACCACTAATTAACTTGCCAGAGCTAAAGGATGTATGTACTGTAAACAAT---------------AT----TTATACTATAATAATAT---------------------------AA-----ATA--TATATATATATATATATT---TGC---TTTCAAGGATCAGCTGACAAGTGAACAAGCTAAAGCATCGGCATCTGGGGCTCAATGGGTGTGTTCAGTAAATGTTGCTGAGTTTCGAAGCTTAGTCAAAACCCTCGTCGGTGGAGTTAAAACAATTACATGGGGTTTTTTTAATTCAAAAGTATGTTTAAAAT---CGATTTTTTGTT---------------GT-T---G-------------------------TATTTTCCCTAAT--------------A---------------------------------------TC--TTTTAAAGTTTCAGATTTCTGATACAAGTCTTGTTACACAAGAAAAGCTTTTTAATCC
dp5 Unknown_group_316:11985-12353 - TT-CAAGGAAAC-T---CAACATTACCACTAATTAACTTGCCAGAACTAAAGGATGTATGTACTGTAAACAAT---------------AT----TTATACTATAATAATAT---------------------------AA-----ATAAATATATATATATATATATT---TGC---TTTCAAGGATCAGCTGACAAGTGAACAAGCTAAAGCATCGGCATCTGGGGCTCAATGGGTGTGTTCAGTAAATGTTGCTGAGTTTCGAAGCTTAGTCAAAACCCTCGTCGGTGGAGTTAAAACAATTACATGGGGTTTTTTTAATTCAAAAGTATGTTTAAAAT---CGATTTTTTGTT---------------GT-T---G-------------------------TATTTTCCCTAAT--------------A---------------------------------------TC--TTTTAAAGTTTCAGATTTCTGATACAAGTCTTGTTACACAAGAAAAGCTTTTTAATCC
droWil2 scf2_1100000004513:5123918-5124275 + TG-AGTGGCACG-CTATCTTCCCTACCAATGATGAATGTATCAGAATTAAAAGATGTATGTATATTG------TGACGTAAAAGAT--GT---------TTA--ACACGGT---------------------------AA-----ATAAATAT-----------------AAATA-TTTTGCAGGATAATATA---GGAGAGCAAGCTAAAACACCGTCGGCTGGATCTCAATGGGTTTGCTCAGTAAATGTTGCTGAATTTCGAAGTTTAGTCAAAACGCTTGTAGGAGGAGTTAAAACTATTACTTGGGGCTTTTTCAATTCAAAGGTAAGCTCCCATTC---CTT--------AACCCC---GAT---C-AG---A--------------------------TCATATCTTATT---------ATT-----TG----------------------------------------AATTTTCTCTCAGATCTCAGATACAAGTCCGCAAGCCCAAGAGAAATTATTTAGTCC
droVir3 scaffold_12875:12082953-12083208 - dvi_6362 A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAACAACTGGGGAGCGAGCAAAATAAAAC---CACGACGGGTTCACAATTAATTTGTTCAGTAAATGTAGCTGAATTTCGAAGTTTAGTCAAGACACTTGTTGGAGGCGTAAAAACTATTACTTGGGGATTTTTCAACTCAAAGGTATGGTTTTTCAAATTG---TTG--------------TACAATTC-AT-A---------------TGTTATTCTTATTTTTTTT------------------T---------------------------------------AT--TATTAAAGAGTCATGTTTCGGATCCAAGTTTACAAATGCAGGAAAAACTTTTTAATCC
droMoj3 scaffold_6496:14736110-14736493 + TT----GGTTCA-T---TTAACTTACCCGTTCTTCCTTTAGCAGAGATTAAAGACGTAAGTGACTCT------CGATGAGTA-----TAT----TTGTATTAT---ATTTTGATTTTATATTATCATTCATAT--TCCTTTCCCT-----A------------------TTTACCACATTTAAGGATCAGTTAGTCAGCGATCAGTCGAAAACA---ACGACTGGCTCACAATTGATTTGCTCTGTGAATGTAGCTGAATTTCGAAGTTTGGTGAAAACACTCGTTGGTGGCGTTAAAACAATTACTTGGGGATTTTTCAATTCAAAGGTATGATTATTTAACTAG---ATTTTTA----------TTAAATTC-AA-C-----------------TAAT----A-----CT----C---------TTCTTT---------------------------------------CT--TATAATAGACTCATGTCTCCGAATCCAACATGCAAGTGCAGGAGAAGCTGTTCAGTCC
droGri2 scaffold_15245:11954558-11954803 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAGCTGGGGAGCGACCAAGCTAAAATGTCGACGACTGCCAACCAAA---TTGCTTGCACAGCTGTAGCTGAATATCGAAGTTTGGTCAAAACACTTGTTGGAGGAGTAAAGACAATTACTTGGGGATTTTTTAACTCAAAGGTATGTTTATTGAGAT---GTAATAGCA---------------TT-GAA-A----------TTTTGT-TAGT----AAT---------T---------GAT--T---------------------------------------TA--TATTATAGACTCAGGTTGCAGAACCAAGC------GTACAGGATAAACTATTTAATCC
droAna3 scaffold_13266:19823953-19824319 - CG-ACAGGGGCT-CATATTCCATTACCAGTTATAAATGTATCAGAATTAAAAGACGTACGTATGAAGTATAAT---------------TTTGGG-----CCC------------------------------T--AACTAAATAAACA--T------------------TTTACAATCATGTAGGATCAATTATCAAATGAACAAGCCAAAACTTTTGCAAATGGATCTCAATGGGTTTATTCAGTAAATGTGGCAGAGTTTCGGAGTTTGGTAAAAACACTTGTTGGCGGAGTTAAAACCATAACATGGGGTTTTTTTAACTCTAAGGTATGTTTTCCAAATA------A-----A-----ATA---C---------ATTTTATTAAT--ATATGTTAT------------GTTAT---------ATTGTG---------------------------------------GT--TTTTAAAGTTTCAGGTCTCTGACACTAACCTGCTAAACCACGAAAAGCTCTTTTCACC
droBip1 scf7180000395053:37067-37485 + AC-GACGGGAGCTCACATTACATTACCAGTTATAAATGTATCCGAACTAAAAGACGTACGTATGAAATATAAT---------------TTTAGT-----TTA------------------------------T--AACTAACTAAATA--A-----------------TTTTATAAACATCTAGGATCAATTAGGAAATGAACATTCCAAAACATTTGCAAATGGATCCCAATGGGTGTATTCCGTAAATGTGGCAGAATTTCGAAGTTTGGTTAAAACACTTGTTGGCGGAGTTAAAACCATAACATGGGGATTTTTTAACTCAAAGGTACGTTTTTAAAATA------A-----A-----ATAA--C---------CGTTTATTA----TTGC-TTAT--G------TGCTTAATGTGCTTACGTTT--ATGTGCTTAAATAAACAAATAATAAAAAATAATTGTTTTGCACTTTGTAAAGTTTCAGGTTTCTGACACTAATCTGCTAAACCATGAAAAGCTCTTTTCACC
droKik1 scf7180000302027:11703-12069 + CA-ACGGGCAGT-G---TTCCTCTATTACTCTGCAATGTATCTGATTTAAAAGATGTATGTATCAGAAAAG--T----CAAACCAATTAT-T-------ACA---------------------------TTGT--TGCTAATAGA-----A-------------------ATATA-TCTATCAGGATCAAATGTCAAGTGACCAAGGAAAAGGATCTGCTACTGGGACACAGTGGGTTTATTCGGTTAATGTTGCAGAATTCCGAAGTTTGGTAAAAACTCTAGTTGGTGGAGTCAAGACCATTACATGGGGATTTTTTAATTCAAAAGTATGTTTTCCTATATTG---TTTACAT---------------A-TA---T----------GTATATGCTATGCT------TTCCTTAT--------------G---------------------------------------TC--TAAAAAAGTTTCAGATATCTGACACATGCAATGTTAACCACGAAAAGCTTTTTGGCCC
droFic1 scf7180000453609:46521-46862 - CG-TCTGGAAAC-G---TTTTAGCGC------------TGTCAGACATGAAGGATGTAAGTATTAAAATTAAT---------------ATTA-------TA---------------------------AAAAA--TGCTAACCAG-----A-------------------CCTCATTCTGTTAGGATCAAATATCAAACGATCAAATCAAAATTTCCTCTACTGGATCACAATGGGCAAATACGGTTAATGTAGCTGAATTTCGAAGTTTGGTAAAAACCCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTCAACTCAAAGGTATGTTTTCAGT---AATTTGTTTGAT---------------G-CA---A-------------------------TAATTTTAAT--T---------ATTTCG---------------------------------------GA--CTGAAAAGTTTCAGATGTCTGATACAGGTCATGCTTATCACGAAAAGCTTTTTGGTCC
droEle1 scf7180000490420:44590-44945 + CT-TCAAGCCCC-G---CTTCATTGTCGCTTATAAATGTGCCAGATCTAAAGGAGGTATGTATTATGGCAAAAT-------------TATTT-------GTA---------------------------TAAC--TGTAAACCAA-----A-------------------ATGTATTCTTCTAGGACCAAATATCTAATGAACCAGCAAAATCGTCCGGAACTGGAATACAGTGGGTTAATTCCGTAAATGTAGCTGAATTTCGAAGCTTAGTTAAAACTCTTGTTGGTGGAGTTAAAACAATTACATGGGGTTTTTTCAACTCTAAGGTATGTTTTTTTTT---TTT--------AATTTA---AA----G-CC---TTAACATTA----------------------TTTATAAA--------------T---------------------------------------TC--TTAAAAAGTTTCAGATTTCTGATACGGGCCTTCCTAATCACGAAAAGCTGTTTAGTCC
droRho1 scf7180000779943:13909-14258 - CA-ACTGGCACT-G---TTTCATTGTCGCTTATTAATGTGGCAGACTTAAAGGATGTATGTATTGTAAATAAAT-------------TATTT-------TCA---------------------------TTAT--TGCTAAACAA-----A-------------------ATTTATTCTACTAGGATCAAATATCCAATGAACAAACAAAATCATATGGAACTGGATCGCAATGGGTGAATTCTGTAAATGTTGCCGAATTTCGAAGCTTAGTTAAAACTCTTGTGGGTGGAGTTAAAACTATAACATGGGGTTTTTTCAACTCTAAGGTACGTTTTTCACAAT------T-----T-----ATC---------A---CTTTTATTA----------------------TTCATAAT--------------G---------------------------------------TC--TCGAAAAGTTTCAGATATCTGAAACAGGTCTACCCCAACACGAAAAGCTGTTCAGCCC
droBia1 scf7180000301165:6202-6550 - CG-AATGGCAAC-G---TCTCTTTGTCGCTTATCACTGTGCCTGATCCGAAAGATGTATGTACTTAAAAAAAT---------------ACTTTC-----ATT------------------------------T--AGCTAACCAA-----C-------------------AACATTTCAATTAGGACCAAATATCCAACGAACAATCTAAAACGTCGGCTTCTGGATTACAATGGGTTAATTCTGTAAATGTAGCTGAATTTCGGAGCTTAGTAAAAACTCTTGTAGGAGGAGTTAAAACAATAACATGGGGTTTCTTCAACTCTAAAGTATGTTTTA-AT---AATATTTTTGCA---------------TT-T---A-------------------------TTTTTGTCTTAAT--------------G---------------------------------------TT--TCTTAAAGTTTCAGGTATCTGATACAATTCTTGCTAATCATGAAAAGATATTTGGACC
droTak1 scf7180000415393:4130-4476 - TG-ACTGGGAAT-G---TGTCATTGCCGCTTATAAATGTGCCAGATCTAAAAGATGTATGTACTTTTATGAAAC---------------TTT-------TA---------------------------TATAT--TGCTTACCCA-----A-------------------ATATATTCTATTAGGATCAAGTTTCCAATGAACAAGCTAAAGCCTCCGCTACTGGATCACAATGGGTAAATTCCGTTAACGTTGCTGAATTTCGAAGCTTAGTAAAAACTCTTGTAGGTGGAGTTAAAACAATAACATGGGGGTTTTTTAACTCTAAGGTATGTTTTTATTAATCA---TT-----------------------A---T----------------TTTTCGTT------TTTTTAAT--------------G---------------------------------------TT--TTTAAAAGTTTCAGGTATCTGATACAATTCTTGCGAATCATGAAAAGATTTTTGGACC
droEug1 scf7180000408888:20548-20907 - TCGACTAGCAAC-G---TCCCAATGCCGCTAAGTAATATATCAGATCTAAATAATGTATGTATTATAAAAAAAT--------------AT-------TACA---------------------------AATAT--TGCTAACCAA-----A-------------------GTTTATTCTGCCAGGACCTAATATTGAATGAGCAAGCAAGATCAACCGCTACTGGATCACAATGGGTTAATTCTATAAATGTAGCTGAATTTCGAAGCTTAGTAAAAACACTTGTGGGCGGAGTTAAAACCATAACGTGGGGCTTCTTTAATTCAAAGGTATGTTTTTAAAAATCA---TTCTGGT---------------A-TA---T----------TTTTAT-TTAT------------TTTTT---------ATTTTT---------------------------------------TT--TCGAAAAGTTTCAGATATCTGATACAATGCCTACTAATCATGAAAAGATTTTTGGACC
dm3 chr2R:1091411-1091748 - CA-TCTGGCAAC-G---CTTCCTTATCACACATTAACGCGCCAGATCTAAAAGACGTACGTATTAAAG-AAAGTG----------------A-----TGCA---------------------------AAACATATGCTAA--GA-----G-------------------TTATGTTATTTTAGGAC---ATATCCAACATCC------AAGTATCTGCATCTGGATCACAATGGATATATTCCGTCAATGTCGCTGAATTTCGAAGCTTAGTAAAAACCCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTTAACTCAAAGGTAAA------AG---CATTTTCTTGCT---------------T-AG---T--------------------------TTTTTGTTTACT---------ACT--TT-TG----------------------------------------TATTCAGTTTCAGCTAACTGATACCAAACTGGCCAACCATGAAAAAATTTTTGGACC
droSim2 2r:2105223-2105561 - CA-TCTGGCAAC-G---TTTCCATGTCACAAATTAACGCGCCAGATCTAAAAGACGTACGTATTAATG-AATGTG----------------A-----TGGA---------------------------AATCATA--CTAAGTGA-----G-------------------CTATGTTATTTTAGGAC---ATATCCAACATCC------AAGTATCTGCATCTGGATCACAATGGATTTATTCCGTAAATGTCGCTGAATTTCGAAGCTTAGTAAAAACTCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTTAACTCAAAGGTAAA------AG---AATTCATTTGGT---------------T-CG---T-------------------------TTTTTTTTTTAAT---------ATT--TT-TG----------------------------------------TATAAAGTTTCAGCTAACTGACACAATTCTTGCCAGCCATGAAAAAATTTTTGGACC
droSec2 scaffold_59:37349-37689 - CA-TCTGGCAAC-G---TTTCCATGTCACAAATTAACGCGCCAGATCTAAAAGACGTACGTATTAATG-AATGTG----------------A-----TGGA---------------------------AATCATA--CTAAGTGA-----G-------------------TTATGTTATTTTAGGAC---ATATCCAACATCC------AAGTATCTGCATCTGGATCACAATGGATTTATTCCGTAAATGTCGCTGAATTTCGAAGCTTAGTAAAAACTCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTTAACTCAAAGGTAAA------AG---AATTTATTTGGT---------------T-CG-TTT-------------------------TTTTTTTTTTAAT---------ATT--TT-TG----------------------------------------TATAAAGTTTCAGCTAACTGACACAATTCTTGCCAGCCATGAAAAAATTTTTGGACC
droYak3 v2_chr2L_random_028:1078067-1078415 - CT-TCTGGAAAC-G---CTTCCCTATCACACATTAATGCGCCAGATGTAAAAGACGTACGTATTCAAAAAAATTT----------------A-----TACA---------------------------AAACATATGCTAACCAA-----A-------------------CTATATTATTTTAGGAC---ATATCCAATATCC------AAGCCACTGCATCTGGATCACAATGGGTTTATTCCGTAAATGTAGCTGAATTTCGAAGCTTAGTTAAAACTCTTGTGGGAGGAGTAAAAACAATAACATGGGGTTTTTTTAACTCAAAGGTAAGTAA---AT---ATTTTTTTTGTT---------------TT-CCTAT-------------------------TTTTTTTCTTACT---------ATT--TTTTG----------------------------------------TTTAAAGTTTCAGCTAACTGATACAATTCTTGCCAATCATGAAAAAATTTTCGGACC
droEre2 scaffold_4929:21525231-21525576 + A--TCTGGAAAC-G---TTTCCCTATCAAACATTAATGCGCCAGATCTAAAAGACGTACGTGTTACAAAAAATTG----------------A-----TGCA---------------------------AAACATATTCTTACCGT-----G-------------------TTATATTATTTTAGGAC---ATATCTAACATCC------AAGCATCTGCATCTGGATCACAATGGGTTTATTCCGTAAATGTAGCCGAATTTCGAAGCTTAGTTAAAACTCTTGTGGGAGGAGTAAAAACAATAACATGGGGTTTTTTTAACTCAAAGGTAAATAA---AT---AATGCTTTTGTT---------------C-CC---T-------------------------TTTTTTTTTTACT---------ATTTTT---------------------------------------TT--TTTTAAAGTTTCAGCTAACTAACACAAATCTTGCCAATCATGAAAAAATTTTTGGACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TT-CAAGGAAAC-T---CAACATTACCACTAATTAACTTGCCAGAGCTAAAGGATGTATGTACTGTAAACAAT---------------AT----TTATACTATAATAATAT---------------------------AA-----ATA--TATATATATATATATATT---TGC---TTTCAAGGATCAGCTGACAAGTGAACAAGCTAAAGCATCGGCATCTGGGGCTCAATGGGTGTGTTCAGTAAATGTTGCTGAGTTTCGAAGCTTAGTCAAAACCCTCGTCGGTGGAGTTAAAACAATTACATGGGGTTTTTTTAATTCAAAAGTATGTTTAAAAT---CGATTTTTTGTT---------------GT-T---G-------------------------TATTTTCCCTAAT--------------A---------------------------------------TC--TTTTAAAGTTTCAGATTTCTGATACAAGTCTTGTTACACAAGAAAAGCTTTTTAATCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................TTCAAGGATCAGCTGACAAGTGAACAAGC......................................................................................................................................................................................................................................................................................................................................2913.003300000
...................................................................................................................................................................................................................GCATCGGCATCTGGGGCTC...............................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................................TTAAAACAATTACATGGGGT............................................................................................................................................................................................................................2011.001001000
....................................................................................................................................................................................................................................................................................................GTTAAAACAATTACATGGGGT............................................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................................................................................................................TTAGTCAAAACCCTCGTCGGTGGAGTTAA............................................................................................................................................................................................................................................2911.001010000
.....................................................................................................................................................................................................................ATCGGCATCTGGGGCTCAATGGGTGTGTT...................................................................................................................................................................................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................CGGCATCTGGGGCTCAATG...........................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................TCGGCATCTGGGGCTCAATGGGTGTG.....................................................................................................................................................................................................................................................................................................2611.001010000
dp5
TT-CAAGGAAAC-T---CAACATTACCACTAATTAACTTGCCAGAACTAAAGGATGTATGTACTGTAAACAAT---------------AT----TTATACTATAATAATAT---------------------------AA-----ATAAATATATATATATATATATT---TGC---TTTCAAGGATCAGCTGACAAGTGAACAAGCTAAAGCATCGGCATCTGGGGCTCAATGGGTGTGTTCAGTAAATGTTGCTGAGTTTCGAAGCTTAGTCAAAACCCTCGTCGGTGGAGTTAAAACAATTACATGGGGTTTTTTTAATTCAAAAGTATGTTTAAAAT---CGATTTTTTGTT---------------GT-T---G-------------------------TATTTTCCCTAAT--------------A---------------------------------------TC--TTTTAAAGTTTCAGATTTCTGATACAAGTCTTGTTACACAAGAAAAGCTTTTTAATCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................GTCAAAACCCTCGTCGGTGG..................................................................................................................................................................................................................................................2011.0010000100000
.....................................................................................................................................................................................................................................................TAAATGTTGCTGAGTTTCGAAGCT........................................................................................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................AAAGCATCGGCATCTGGGGCT................................................................................................................................................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................TAAAGCATCGGCATCTGGG...................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................GACAAGTGAACAAGCTAAAGCATCGGCAT........................................................................................................................................................................................................................................................................................................................2911.0010010000000
.............................................................................................................................................................................................................................CTGGGGCTCAATGGGTGTGTTC..................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................TCTGGGGCTCAATGGGTA.......................................................................................................................................................................................................................................................................................................1820.5010100000000
droWil2
TG-AGTGGCACG-CTATCTTCCCTACCAATGATGAATGTATCAGAATTAAAAGATGTATGTATATTG------TGACGTAAAAGAT--GT---------TTA--ACACGGT---------------------------AA-----ATAAATAT-----------------AAATA-TTTTGCAGGATAATATA---GGAGAGCAAGCTAAAACACCGTCGGCTGGATCTCAATGGGTTTGCTCAGTAAATGTTGCTGAATTTCGAAGTTTAGTCAAAACGCTTGTAGGAGGAGTTAAAACTATTACTTGGGGCTTTTTCAATTCAAAGGTAAGCTCCCATTC---CTT--------AACCCC---GAT---C-AG---A--------------------------TCATATCTTATT---------ATT-----TG----------------------------------------AATTTTCTCTCAGATCTCAGATACAAGTCCGCAAGCCCAAGAGAAATTATTTAGTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................TGTTGCTGAATTTCGAAGTTTAGT....................................................................................................................................................................................................................................................................2411.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTCCGCAAGCCCAAGAGAAAT..........2611.00101000
...........................................................................................................................................................................................................................................................................................................CTATTACTTGGGGCTTTTTCA.....................................................................................................................................................................................................................2111.00100010
.....................................................................................................................................................................................................................................CAATGGGTTTGCTCAGTAAATGTTGC......................................................................................................................................................................................................................................................................................2611.00101000
.........................................................................................................................................................................................ATAATATA---GGAGAGCAAG.......................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................GCTAAAACACCGTCGGCTGGATCTC...............................................................................................................................................................................................................................................................................................................2511.00110000
..................TTCCCTACCAATGATGAATGTATCAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
...................................ATGTATCAGAATTAAAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...................................................................................................................................................................................................................................................................TTTCGAAGTTTAGTCAAAACGCTTGTAG......................................................................................................................................................................................................................................................2811.00101000
.....................................................................................................................................................................................................................................................................................ACGCTTGTAGGAGGAGTTAAAA..........................................................................................................................................................................................................................................2211.00100001
..........................................................................................................................................................................................................................................................................................TGTAGGAGGAGTTAAAACTATTACT..................................................................................................................................................................................................................................2511.00100010
droVir3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAACAACTGGGGAGCGAGCAAAATAAAAC---CACGACGGGTTCACAATTAATTTGTTCAGTAAATGTAGCTGAATTTCGAAGTTTAGTCAAGACACTTGTTGGAGGCGTAAAAACTATTACTTGGGGATTTTTCAACTCAAAGGTATGGTTTTTCAAATTG---TTG--------------TACAATTC-AT-A---------------TGTTATTCTTATTTTTTTT------------------T---------------------------------------AT--TATTAAAGAGTCATGTTTCGGATCCAAGTTTACAAATGCAGGAAAAACTTTTTAATCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................TGTTGGAGGCGTAAAAACTATTACT..................................................................................................................................................................................................................................2512.002000000000100000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................GCTGAATTTCGAAGTTTAGTCAAGACA.............................................................................................................................................................................................................................................................2711.001000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................GAGCAAAATAAAAC---CACGACGGGT...................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GCAAAATAAAAC---CACGACG......................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................AGTCAAGACACTTGTTGGA....................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................AATTTGTTCAGTAAATGTAGCT.....................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................AAAATAAAAC---CACGACGG.....................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................TTTAGTCAAGACACTTGTTGGAGGC.................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AGTTTAGTCAAGACACTTGTTG......................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AGACACTTGTTGGAGGCGTAAAA...........................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGATCCAAGTTTACAAATGCA..................2511.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CAAGACACTTGTTGGAGGCGT...............................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAATGCAGGAAAAACTTTTTAA...2511.001000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTAGTCAAGACACTTGTTGGAGGCG................................................................................................................................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCGGATCCAAGTTTACAAATGCA..................2711.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AGTTTAGTCAAGACACTTGTTGGA....................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................TAGTCAAGACACTTGTTGGAGGCG................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................GCAAAATAAAAC---CACGACGGGTTCACAA.............................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTTTAGTCAAGACACTTGTTGGAGGC.................................................................................................................................................................................................................................................2611.001000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................TTCACAATTAATTTGTTCAGTAAATGT.........................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TT----GGTTCA-T---TTAACTTACCCGTTCTTCCTTTAGCAGAGATTAAAGACGTAAGTGACTCT------CGATGAGTA-----TAT----TTGTATTAT---ATTTTGATTTTATATTATCATTCATAT--TCCTTTCCCT-----A------------------TTTACCACATTTAAGGATCAGTTAGTCAGCGATCAGTCGAAAACA---ACGACTGGCTCACAATTGATTTGCTCTGTGAATGTAGCTGAATTTCGAAGTTTGGTGAAAACACTCGTTGGTGGCGTTAAAACAATTACTTGGGGATTTTTCAATTCAAAGGTATGATTATTTAACTAG---ATTTTTA----------TTAAATTC-AA-C-----------------TAAT----A-----CT----C---------TTCTTT---------------------------------------CT--TATAATAGACTCATGTCTCCGAATCCAACATGCAAGTGCAGGAGAAGCTGTTCAGTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................TCCTTTCCCT-----A------------------TTTACCACATTT................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................................................................................................................................................................................................................................TGATTTGCTCTGTGAATGTAGCTGAA..................................................................................................................................................................................................................................................................................2611.001100000
droGri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATCAGCTGGGGAGCGACCAAGCTAAAATGTCGACGACTGCCAACCAAA---TTGCTTGCACAGCTGTAGCTGAATATCGAAGTTTGGTCAAAACACTTGTTGGAGGAGTAAAGACAATTACTTGGGGATTTTTTAACTCAAAGGTATGTTTATTGAGAT---GTAATAGCA---------------TT-GAA-A----------TTTTGT-TAGT----AAT---------T---------GAT--T---------------------------------------TA--TATTATAGACTCAGGTTGCAGAACCAAGC------GTACAGGATAAACTATTTAATCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CG-ACAGGGGCT-CATATTCCATTACCAGTTATAAATGTATCAGAATTAAAAGACGTACGTATGAAGTATAAT---------------TTTGGG-----CCC------------------------------T--AACTAAATAAACA--T------------------TTTACAATCATGTAGGATCAATTATCAAATGAACAAGCCAAAACTTTTGCAAATGGATCTCAATGGGTTTATTCAGTAAATGTGGCAGAGTTTCGGAGTTTGGTAAAAACACTTGTTGGCGGAGTTAAAACCATAACATGGGGTTTTTTTAACTCTAAGGTATGTTTTCCAAATA------A-----A-----ATA---C---------ATTTTATTAAT--ATATGTTAT------------GTTAT---------ATTGTG---------------------------------------GT--TTTTAAAGTTTCAGGTCTCTGACACTAACCTGCTAAACCACGAAAAGCTCTTTTCACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................ACTTTTGCAAATGGATCTCAATGGGTT.......................................................................................................................................................................................................................................................................................................2711.001010000
......................TTACCAGTTATAAATGTATCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
...............................................................................................................................................................................................................................................................................GTAAAAACACTTGTTGGCGGA.................................................................................................................................................................................................................................................2111.001000010
............................................................................................................................................................................................................................................................................TTGGTAAAAACACTTGTTGGCGGAG................................................................................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................................TTTCGGAGTTTGGTAAAAACACTTG.........................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................GCAAATGGATCTCAATGGGTT.......................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACTAACCTGCTAAACCACGAAAAGC..........2911.001100000
droBip1
AC-GACGGGAGCTCACATTACATTACCAGTTATAAATGTATCCGAACTAAAAGACGTACGTATGAAATATAAT---------------TTTAGT-----TTA------------------------------T--AACTAACTAAATA--A-----------------TTTTATAAACATCTAGGATCAATTAGGAAATGAACATTCCAAAACATTTGCAAATGGATCCCAATGGGTGTATTCCGTAAATGTGGCAGAATTTCGAAGTTTGGTTAAAACACTTGTTGGCGGAGTTAAAACCATAACATGGGGATTTTTTAACTCAAAGGTACGTTTTTAAAATA------A-----A-----ATAA--C---------CGTTTATTA----TTGC-TTAT--G------TGCTTAATGTGCTTACGTTT--ATGTGCTTAAATAAACAAATAATAAAAAATAATTGTTTTGCACTTTGTAAAGTTTCAGGTTTCTGACACTAATCTGCTAAACCATGAAAAGCTCTTTTCACCSizeHit CountTotal NormTotal
No Reads
droKik1
CA-ACGGGCAGT-G---TTCCTCTATTACTCTGCAATGTATCTGATTTAAAAGATGTATGTATCAGAAAAG--T----CAAACCAATTAT-T-------ACA---------------------------TTGT--TGCTAATAGA-----A-------------------ATATA-TCTATCAGGATCAAATGTCAAGTGACCAAGGAAAAGGATCTGCTACTGGGACACAGTGGGTTTATTCGGTTAATGTTGCAGAATTCCGAAGTTTGGTAAAAACTCTAGTTGGTGGAGTCAAGACCATTACATGGGGATTTTTTAATTCAAAAGTATGTTTTCCTATATTG---TTTACAT---------------A-TA---T----------GTATATGCTATGCT------TTCCTTAT--------------G---------------------------------------TC--TAAAAAAGTTTCAGATATCTGACACATGCAATGTTAACCACGAAAAGCTTTTTGGCCCSizeHit CountTotal NormTotal
No Reads
droFic1
CG-TCTGGAAAC-G---TTTTAGCGC------------TGTCAGACATGAAGGATGTAAGTATTAAAATTAAT---------------ATTA-------TA---------------------------AAAAA--TGCTAACCAG-----A-------------------CCTCATTCTGTTAGGATCAAATATCAAACGATCAAATCAAAATTTCCTCTACTGGATCACAATGGGCAAATACGGTTAATGTAGCTGAATTTCGAAGTTTGGTAAAAACCCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTCAACTCAAAGGTATGTTTTCAGT---AATTTGTTTGAT---------------G-CA---A-------------------------TAATTTTAAT--T---------ATTTCG---------------------------------------GA--CTGAAAAGTTTCAGATGTCTGATACAGGTCATGCTTATCACGAAAAGCTTTTTGGTCCSizeHit CountTotal NormTotal
No Reads
droEle1
CT-TCAAGCCCC-G---CTTCATTGTCGCTTATAAATGTGCCAGATCTAAAGGAGGTATGTATTATGGCAAAAT-------------TATTT-------GTA---------------------------TAAC--TGTAAACCAA-----A-------------------ATGTATTCTTCTAGGACCAAATATCTAATGAACCAGCAAAATCGTCCGGAACTGGAATACAGTGGGTTAATTCCGTAAATGTAGCTGAATTTCGAAGCTTAGTTAAAACTCTTGTTGGTGGAGTTAAAACAATTACATGGGGTTTTTTCAACTCTAAGGTATGTTTTTTTTT---TTT--------AATTTA---AA----G-CC---TTAACATTA----------------------TTTATAAA--------------T---------------------------------------TC--TTAAAAAGTTTCAGATTTCTGATACGGGCCTTCCTAATCACGAAAAGCTGTTTAGTCCSizeHit CountTotal NormTotal
No Reads
droRho1
CA-ACTGGCACT-G---TTTCATTGTCGCTTATTAATGTGGCAGACTTAAAGGATGTATGTATTGTAAATAAAT-------------TATTT-------TCA---------------------------TTAT--TGCTAAACAA-----A-------------------ATTTATTCTACTAGGATCAAATATCCAATGAACAAACAAAATCATATGGAACTGGATCGCAATGGGTGAATTCTGTAAATGTTGCCGAATTTCGAAGCTTAGTTAAAACTCTTGTGGGTGGAGTTAAAACTATAACATGGGGTTTTTTCAACTCTAAGGTACGTTTTTCACAAT------T-----T-----ATC---------A---CTTTTATTA----------------------TTCATAAT--------------G---------------------------------------TC--TCGAAAAGTTTCAGATATCTGAAACAGGTCTACCCCAACACGAAAAGCTGTTCAGCCCSizeHit CountTotal NormTotal
No Reads
droBia1
CG-AATGGCAAC-G---TCTCTTTGTCGCTTATCACTGTGCCTGATCCGAAAGATGTATGTACTTAAAAAAAT---------------ACTTTC-----ATT------------------------------T--AGCTAACCAA-----C-------------------AACATTTCAATTAGGACCAAATATCCAACGAACAATCTAAAACGTCGGCTTCTGGATTACAATGGGTTAATTCTGTAAATGTAGCTGAATTTCGGAGCTTAGTAAAAACTCTTGTAGGAGGAGTTAAAACAATAACATGGGGTTTCTTCAACTCTAAAGTATGTTTTA-AT---AATATTTTTGCA---------------TT-T---A-------------------------TTTTTGTCTTAAT--------------G---------------------------------------TT--TCTTAAAGTTTCAGGTATCTGATACAATTCTTGCTAATCATGAAAAGATATTTGGACCSizeHit CountTotal NormTotal
No Reads
droTak1
TG-ACTGGGAAT-G---TGTCATTGCCGCTTATAAATGTGCCAGATCTAAAAGATGTATGTACTTTTATGAAAC---------------TTT-------TA---------------------------TATAT--TGCTTACCCA-----A-------------------ATATATTCTATTAGGATCAAGTTTCCAATGAACAAGCTAAAGCCTCCGCTACTGGATCACAATGGGTAAATTCCGTTAACGTTGCTGAATTTCGAAGCTTAGTAAAAACTCTTGTAGGTGGAGTTAAAACAATAACATGGGGGTTTTTTAACTCTAAGGTATGTTTTTATTAATCA---TT-----------------------A---T----------------TTTTCGTT------TTTTTAAT--------------G---------------------------------------TT--TTTAAAAGTTTCAGGTATCTGATACAATTCTTGCGAATCATGAAAAGATTTTTGGACCSizeHit CountTotal NormTotal
No Reads
droEug1
TCGACTAGCAAC-G---TCCCAATGCCGCTAAGTAATATATCAGATCTAAATAATGTATGTATTATAAAAAAAT--------------AT-------TACA---------------------------AATAT--TGCTAACCAA-----A-------------------GTTTATTCTGCCAGGACCTAATATTGAATGAGCAAGCAAGATCAACCGCTACTGGATCACAATGGGTTAATTCTATAAATGTAGCTGAATTTCGAAGCTTAGTAAAAACACTTGTGGGCGGAGTTAAAACCATAACGTGGGGCTTCTTTAATTCAAAGGTATGTTTTTAAAAATCA---TTCTGGT---------------A-TA---T----------TTTTAT-TTAT------------TTTTT---------ATTTTT---------------------------------------TT--TCGAAAAGTTTCAGATATCTGATACAATGCCTACTAATCATGAAAAGATTTTTGGACCSizeHit CountTotal NormTotal
No Reads
dm3
CA-TCTGGCAAC-G---CTTCCTTATCACACATTAACGCGCCAGATCTAAAAGACGTACGTATTAAAG-AAAGTG----------------A-----TGCA---------------------------AAACATATGCTAA--GA-----G-------------------TTATGTTATTTTAGGAC---ATATCCAACATCC------AAGTATCTGCATCTGGATCACAATGGATATATTCCGTCAATGTCGCTGAATTTCGAAGCTTAGTAAAAACCCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTTAACTCAAAGGTAAA------AG---CATTTTCTTGCT---------------T-AG---T--------------------------TTTTTGTTTACT---------ACT--TT-TG----------------------------------------TATTCAGTTTCAGCTAACTGATACCAAACTGGCCAACCATGAAAAAATTTTTGGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................TCTGGATCACAATGGATATATTCCGTC..............................................................................................................................................................................................................................................................................................27157.00570000000000000000000000000000000000000000100000100010100001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000011342000100000000000000000000000000000000000100300000000004000120000100200100000000000000000000000000000000000000000000000000000000000000000000001300050000100001000000000000153400000
.........................................................................................................................................................................................................................................................................................TTGTTGGTGGAGTAAAAACAATAACT..................................................................................................................................................................................................................................26123.00230000000000100000000000000000000000001000000000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000030000000000000000300030200000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001002100000
.............................................................................................................................................................................................................................................................................TAGTAAAAACCCTTGTTGGTGGAGTA..............................................................................................................................................................................................................................................26122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000400130000000000000000000000000000000000000000000000000000000000000000000000001001050000011000000000000000211000000
...................TCCTTATCACACATTAACGCGCCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26122.00220000000000000000000000000000000000000000010000100100000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000300010000000000000000000000000000000000000000000000000000000000000000001010030000201000000000000000001000000
..........................................................................................................................................................................................................................................................................................TGTTGGTGGAGTAAAAACAATAACT..................................................................................................................................................................................................................................25118.00180000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010100000000000000322201000
....................................................................................................................................................................................................................TATCTGCATCTGGATCACAATGGA.........................................................................................................................................................................................................................................................................................................24118.00180000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010700020000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000002010200000
..................................AACGCGCCAGATCTAAAAGACGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25117.00170000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000200000
.................................................................................................................................................................................................................................................TCCGTCAATGTCGCTGAATTTCGAAGC.........................................................................................................................................................................................................................................................................27116.00160000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000200100101010000000000000000000000000000000000000000000000000000000000000000000000010000101000000000000000010300000
...................................................................................................................................................................................................................................................................TTTCGAAGCTTAGTAAAAACCCTTGT........................................................................................................................................................................................................................................................26114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100030004020000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000100000
.................................TAACGCGCCAGATCTAAAAGACGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26112.00120000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................................................................................................................................................................................................................................TCGAAGCTTAGTAAAAACCCTTGTTGG.....................................................................................................................................................................................................................................................27112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000400030000010000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000
...............................................................................................................................................................................................TATCCAACATCC------AAGTATCTGCATC.......................................................................................................................................................................................................................................................................................................................25112.00120000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000610000000000000000000100000000000000000000000000000000000000000000000000000010000110000000000000000000000000
.....................................................................................................................................................................................................................................................TCAATGTCGCTGAATTTCGAAGCTTAG.....................................................................................................................................................................................................................................................................27112.00120000000000000000000000000000000000000000000000000000000002000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001111100000
................................................................................................................................................................................................................................................................................TAAAAACCCTTGTTGGTGGAGTAAAAA..........................................................................................................................................................................................................................................27112.00120000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000010500110000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GCTTAGTAAAAACCCTTGTTGGTGGAG................................................................................................................................................................................................................................................27111.00110000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000300000100000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000
....................................................................................................................................................................................................................TATCTGCATCTGGATCACAATGGATA.......................................................................................................................................................................................................................................................................................................26111.00110000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000101130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................C------AAGTATCTGCATCTGGATCACAATGGA.........................................................................................................................................................................................................................................................................................................28111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050302010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TGGATCACAATGGATATATTCCGTC..............................................................................................................................................................................................................................................................................................25110.00100000000000000000000000000000000000000010100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000100000000000000000000000000
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.........................TCACACATTAACGCGCCAGATCTAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TATATTCCGTCAATGTCGCTGA...................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TCCGTCAATGTCGCTGAATTTCGAAG..........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................TGGGGTTTTTTTAACTCAAAG.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AC---ATATCCAACATCC------AAGTATCTGC..........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CCCTTGTTGGTGGAGTAAAAACAATAACT..................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAACTGATACCAAACTGGCCAAC....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TCC------AAGTATCTGCATCTGGATCACAA.............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AACGCGCCAGATCTAAAAGACGTACGTATTAAAG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GTTGGTGGAGTAAAAACAATAACTTG................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ATCTGCATCTGGATCACAATGGATA.......................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAACTGGCCAACCATGAAAAAAT.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAAACTGGCCAACCATGAAAA............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GTCGCTGAATTTCGAAGCTTAGTA...................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................AATTTCGAAGCTTAGTAAAAACCCTT..........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCCTTATCACACATTAACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AACCCTTGTTGGTGGAGTAAAAACAA.......................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................CACATTAACGCGCCAGATCTAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ATCTGCATCTGGATCACAATGGAT........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGATACCAAACTGGCCAACCATGAA..............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTCCGTCAATGTCGCTGAATT................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AATGTCGCTGAATTTCGAAGC.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................ATAACTTGGGGTTTTTTTAACTCAAAGT............................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAAACTGGCCAACCATGAAAAA...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCCTTATCACACATTAACGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TTGGTGGAGTAAAAACAATAACTTGGG..............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
CA-TCTGGCAAC-G---TTTCCATGTCACAAATTAACGCGCCAGATCTAAAAGACGTACGTATTAATG-AATGTG----------------A-----TGGA---------------------------AATCATA--CTAAGTGA-----G-------------------CTATGTTATTTTAGGAC---ATATCCAACATCC------AAGTATCTGCATCTGGATCACAATGGATTTATTCCGTAAATGTCGCTGAATTTCGAAGCTTAGTAAAAACTCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTTAACTCAAAGGTAAA------AG---AATTCATTTGGT---------------T-CG---T-------------------------TTTTTTTTTTAAT---------ATT--TT-TG----------------------------------------TATAAAGTTTCAGCTAACTGACACAATTCTTGCCAGCCATGAAAAAATTTTTGGACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................TCCAACATCC------AAGTATCTGCATCTGGA...................................................................................................................................................................................................................................................................................................................2722.50500010022000000000
........................................................................................................................................................................................................................................TGGATTTATTCCGTAAATGTCGCTGAAT.................................................................................................................................................................................................................................................................................2821.00200000000020000000
..................................AACGCGCCAGATCTAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00200200000000000000
............................................................................................................................................................................................................................................................................TTAGTAAAAACTCTTGTTGGTGGAG................................................................................................................................................................................................................................................2521.00200000010010000000
................................................................................................................................................................................................................................................................GAATTTCGAAGCTTAGTAAAAA...............................................................................................................................................................................................................................................................2220.50100010000000000000
.............................................................................................................................................................................................................................................................................................TGGTGGAGTAAAAACAATAACTTGGGGT............................................................................................................................................................................................................................2820.50100000010000000000
.....................................................................................................................................................................................................................ATCTGCATCTGGATCACAATG...........................................................................................................................................................................................................................................................................................................2120.50101000000000000000
.....................................................................................................................................................................................................................................................................TCGAAGCTTAGTAAAAACT.............................................................................................................................................................................................................................................................1920.50100000001000000000
................................................................................................................................................................................................................................................................................................TGGAGTAAAAACAATAACTTGGGGTTTT.........................................................................................................................................................................................................................2820.50100000000010000000
.........................................................................................................................................................................................................................................................................AGCTTAGTAAAAACTCTTGTTGGTGG..................................................................................................................................................................................................................................................2620.50100000010000000000
.................................TAACGCGCCAGATCTAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000000000000000
..................TTCCATGTCACAAATTAACGCGCCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000000000
............................CAAATTAACGCGCCAGATCTAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000000000
........................................................................................................................................................................................................................................TGGATTTATTCCGTAAATGTCGCTGA...................................................................................................................................................................................................................................................................................2620.50100000001000000000
...............................................................................................................................................................................................................................................ATTCCGTAAATGTCGCTGA...................................................................................................................................................................................................................................................................................1920.50101000000000000000
..........................................................................................................................................................................................................................................................................................TGTTGGTGGAGTAAAAACAATAAC...................................................................................................................................................................................................................................2420.50100000000001000000
...................TCCATGTCACAAATTAACGCGCCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
.........................TCACAAATTAACGCGCCAGATCTAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000010000000000
................................................................................................................................................................................................................................................................................................TGGAGTAAAAACAATAACTTGGGGTT...........................................................................................................................................................................................................................2620.50100000001000000000
.......................................................................................................................................................................................................................................................................................................AAAACAATAACTTGGGGT............................................................................................................................................................................................................................1820.50100000000000100000
.....TGGCAAC-G---TTTCCATGTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCTAACTGACACAATTCTTGCCAGC....................2820.50100000001000000000
..........................................................................................................................................................................................................................................GATTTATTCCGTAAATGTCGCTGAAT.................................................................................................................................................................................................................................................................................2620.50100010000000000000
...............................................................................................................................................................................................TATCCAACATCC------AAGTATCTGCATCTGGA...................................................................................................................................................................................................................................................................................................................2920.50100000001000000000
...................................................................................................................................................................................................................................CACAATGGATTTATTCCGTAAATGT.........................................................................................................................................................................................................................................................................................2520.50100010000000000000
........................................................................................................................................................................................................TCC------AAGTATCTGCATCTGG....................................................................................................................................................................................................................................................................................................................1920.50100000001000000000
droSec2
CA-TCTGGCAAC-G---TTTCCATGTCACAAATTAACGCGCCAGATCTAAAAGACGTACGTATTAATG-AATGTG----------------A-----TGGA---------------------------AATCATA--CTAAGTGA-----G-------------------TTATGTTATTTTAGGAC---ATATCCAACATCC------AAGTATCTGCATCTGGATCACAATGGATTTATTCCGTAAATGTCGCTGAATTTCGAAGCTTAGTAAAAACTCTTGTTGGTGGAGTAAAAACAATAACTTGGGGTTTTTTTAACTCAAAGGTAAA------AG---AATTTATTTGGT---------------T-CG-TTT-------------------------TTTTTTTTTTAAT---------ATT--TT-TG----------------------------------------TATAAAGTTTCAGCTAACTGACACAATTCTTGCCAGCCATGAAAAAATTTTTGGACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................AAAAACTCTTGTTGGTGGAGTAAAA...........................................................................................................................................................................................................................................2511.0010100
......................................................................................................................................................................................................................TCTGCATCTGGATCACAATGG..........................................................................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................ATCC------AAGTATCTGCATCTG.....................................................................................................................................................................................................................................................................................................................1911.0010001
......................................................................................................................................................................................................................................................................................................AAAAACAATAACTTGGGGT............................................................................................................................................................................................................................1911.0010010
...................................................................................................................................................................................................................................................................................AAACTCTTGTTGGTGGAGTAAAAAC.........................................................................................................................................................................................................................................2511.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGACACAATTCTTGCC.......................2011.0011000
.................................................................................................................................................................................................................................................................AATTTCGAAGCTTAGTAAAAACTCTTGT........................................................................................................................................................................................................................................................2811.0011000
.................................................................................................................................................................................................................................................................................AAAAACTCTTGTTGGTGGAGTAAAAAC.........................................................................................................................................................................................................................................2711.0010010
droYak3
CT-TCTGGAAAC-G---CTTCCCTATCACACATTAATGCGCCAGATGTAAAAGACGTACGTATTCAAAAAAATTT----------------A-----TACA---------------------------AAACATATGCTAACCAA-----A-------------------CTATATTATTTTAGGAC---ATATCCAATATCC------AAGCCACTGCATCTGGATCACAATGGGTTTATTCCGTAAATGTAGCTGAATTTCGAAGCTTAGTTAAAACTCTTGTGGGAGGAGTAAAAACAATAACATGGGGTTTTTTTAACTCAAAGGTAAGTAA---AT---ATTTTTTTTGTT---------------TT-CCTAT-------------------------TTTTTTTCTTACT---------ATT--TTTTG----------------------------------------TTTAAAGTTTCAGCTAACTGATACAATTCTTGCCAATCATGAAAAAATTTTCGGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................ATTTCGAAGCTTAGTTAAAAC..............................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................AAAACAATAACATGGGGT............................................................................................................................................................................................................................1811.00101000000000
.........................TCACACATTAATGCGCCAGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................AGTAAAAACAATAACATGGGGT............................................................................................................................................................................................................................2211.00100000010000
droEre2
A--TCTGGAAAC-G---TTTCCCTATCAAACATTAATGCGCCAGATCTAAAAGACGTACGTGTTACAAAAAATTG----------------A-----TGCA---------------------------AAACATATTCTTACCGT-----G-------------------TTATATTATTTTAGGAC---ATATCTAACATCC------AAGCATCTGCATCTGGATCACAATGGGTTTATTCCGTAAATGTAGCCGAATTTCGAAGCTTAGTTAAAACTCTTGTGGGAGGAGTAAAAACAATAACATGGGGTTTTTTTAACTCAAAGGTAAATAA---AT---AATGCTTTTGTT---------------C-CC---T-------------------------TTTTTTTTTTACT---------ATTTTT---------------------------------------TT--TTTTAAAGTTTCAGCTAACTAACACAAATCTTGCCAATCATGAAAAAATTTTTGGACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................TTAATGCGCCAGATCTAAAAGACGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000004
................................................................................................................................................................................................................................................TTCCGTAAATGTAGCCGAATTTCGAAGC.........................................................................................................................................................................................................................................................................2811.0011000000
...........................................................................................................................................................................................................................................................................CTTAGTTAAAACTCTTGTGGGAGGAGT...............................................................................................................................................................................................................................................2711.0010100000
...........................................................................................................................................................................................................................................................................CTTAGTTAAAACTCTTGTGGGAGGAG................................................................................................................................................................................................................................................2611.0011000000
......................................................................................................................................................................................................................................................................CGAAGCTTAGTTAAAACTCTTGTGG......................................................................................................................................................................................................................................................2511.0011000000
...............................ATTAATGCGCCAGATCTAAAAGACGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
................................................................................................................................................................................................ATCTAACATCC------AAGCATCTGC..........................................................................................................................................................................................................................................................................................................................2111.0010000010
........................................................................................................................................................................................................................TGCATCTGGATCACAATGGGC........................................................................................................................................................................................................................................................................................................2111.0010100000
......................................................................................................................................................................................................................................................AAATGTAGCCGAATTTCGAA...........................................................................................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................................................................................................CGTAAATGTAGCCGAATTTCGAAGC.........................................................................................................................................................................................................................................................................2511.0011000000
.......................TATCAAACATTAATGCGCCAGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..........................................................................................................................................................................................................................................................................................TGTGGGAGGAGTAAAAACA........................................................................................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................TCTGCATCTGGATCACAATGGGT........................................................................................................................................................................................................................................................................................................2311.0010000100

Generated: 06/08/2015 at 04:29 PM