ID:

dpe_1638

 Coordinate:

scaffold_4:6979931-6980081 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intron [Dper\GL16702-in]; exon [dper_GLEANR_18550:4]; CDS [Dper\GL16702-cds]; intron [Dper\GL16702-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######################################------------
CGATGCAAATGCAATGCATATTTGATACCGGTCGAGATCGTAACCCTCCATACTCCGACAGAAATATCCTATCTCTATCATACTTATTCGAAACTCGTATCTAGTAGACGCCACGCTGCACGTCCACCAATGTAAATATGCTAATGCCTTTGTTTCTTTTTCTCTCTCTCTCTGTTTCTCCCCCGTCTCCCGCATATCTAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGTAGAGTT
**************************************************......((((((..................((((....(((...))).....))))((((..........)))).........(((((.((....))...)))))...............)))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V111
male body		 M042
female body
................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAA................. 26 0 1 2.00 2 2 0 0
..........................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCTGACC...................... 27 0 1 2.00 2 2 0 0
..........................................................................................................................................................................................................................CTGATCTGACCGAGAAAGAGGC........... 22 1 1 2.00 2 2 0 0
.........................................................................................................................................................................................................................TCTGATCTGACCGAGAAA................ 18 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................CTCAGTGGTGGCGTCAAGTTCTCTG.............................. 25 3 1 1.00 1 0 1 0
.....................................................................................................................................................................................................................GTTCTCTGATCTGACCGAGA.................. 20 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................GTGGCGTCAAGTTCTCTGATCT.......................... 22 0 1 1.00 1 1 0 0
.............................................................................................................................................................................................................GGCGTCAAGTTCTCTGATCT.......................... 20 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGAGGC........... 24 1 1 1.00 1 0 1 0
.....................................................................................................................................................................................................TCAGTGGTGGCGTCAAGTTCTCTG.............................. 24 2 1 1.00 1 0 0 1
......................................................................................................................................................................................................................TTCTCTGATCTGACCGAGAAAG............... 22 0 1 1.00 1 0 1 0
.......................................................................................................................................................................................................AGTGGCGGCGTCAAGTTCTCTGATCT.......................... 26 1 1 1.00 1 1 0 0
..........................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCC.......................... 23 1 1 1.00 1 1 0 0
.................ATATTTGATACCGGTCGAGATC.................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAAA................ 27 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCT.......................... 23 0 1 1.00 1 0 1 0
..................................................................................................................................................................................................................CAAGTTCTCTGATCTGACC...................... 19 0 1 1.00 1 1 0 0
..................................................................................................................................................................................................................CAAGTTCTCTGATCTGACCGAGA.................. 23 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................................CGTCAAGTTCTCTGATCTGACC...................... 22 0 1 1.00 1 0 0 1

Anti-sense strand reads

GCTACGTTTACGTTACGTATAAACTATGGCCAGCTCTAGCATTGGGAGGTATGAGGCTGTCTTTATAGGATAGAGATAGTATGAATAAGCTTTGAGCATAGATCATCTGCGGTGCGACGTGCAGGTGGTTACATTTATACGATTACGGAAACAAAGAAAAAGAGAGAGAGAGACAAAGAGGGGGCAGAGGGCGTATAGATCACCACCGCAGTTCAAGAGACTAGACTGGCTCTTTCTCCCATTCATCTCAA
**************************************************......((((((..................((((....(((...))).....))))((((..........)))).........(((((.((....))...)))))...............)))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
..........................TGGCCAGTTCTGGCATGGGGA............................................................................................................................................................................................................ 21 3 4 0.25 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_4:6979881-6980131 - dpe_1638 C--GATGCAAATGCAA--------TGCATATTTGATACCGGTCGAGATCGT-AACCCTCCAT---ACTC----------------------C-GACAGAAATA-TCCTATCTCTATCATACTTATTCGAAACTC--------------G------TATCTAGTAGACGCCACG-------C-TGCACGTCCACCAAT-G--TAAATATGCTAATGCCTTTGTTTCTTTT----TCTCT-CTCTCTCT---GTT---TC-----TCCCCC-G-T----CTCCCGCATATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TT
dp5 3:11580808-11581063 - dps_1165 C--GATGCAAATGCAA--------TGCATATTTGATACCGGTCGAGATCGT-AACCCTCCAT---ACTC----------------------C-GACAGAAATA-TCCTATCTCTATCATACTTATTCGAAACTC--------------G------TATCTAGTAGACGCCACG-------C-TGCACGTCCACCAAT-G--TAAATATGCTAACGCCTTTGTTTCTTTTTCTCTCTCT-CTCTCTCT---GTT---TC-----TCCCCCCG-T----CTCCCGCATATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TT
droWil2 scf2_1100000004954:3381302-3381409 + C--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTT---TTCTCTTCCTCATCCGT---T-TGAATAATCCG----TA--TAGTGGTGGCGTTAAGTTCTCCGATTTGACCGAAAAAGAGGGTAAGTTCTTAAATTATAGACTATAG------AT
droVir3 scaffold_12875:19949112-19949166 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGGCGGCGTCAAGTTCTCCGATCTGACCGAGGATGAGGGTAAGTTC--------------TGAA------CT
droMoj3 scaffold_6496:6247421-6247527 - T--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCA------TCCT----------TCTTT-TTATCTCTTTTATC---TC-----TCCCCT---T----TGCTAAAAACTC--TAGCGGAGGCGTCAAGTTCTCAGATCTAACCGAAGATGAGGGTAAGTTC--------------TAAG------AG
droGri2 scaffold_15245:11589126-11589211 - T--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAT---ATCTTT---TTT-----ATCTCTCCC---C-T----TTTCAATATATT--TAGCGGTGGAGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------------------
droAna3 scaffold_13266:4205342-4205545 + TGCGA-----TTGCTATTCTGTG-AACATATTTAATTCGATTCGAGTCT--CCAATCT--------------------------------CC-G----AGATA-CT------------------------------------------T------TATCTAGTGAATGCCCCCCGAAA--C-TGTATACC------------CAGAATGCTAATTTA--TCTT----------TTTGT-TTTTCTCT---GTT---TC-----TTCCCT-A------TACCCGAATATCTATAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------AC
droBip1 scf7180000395751:21397-21611 + TGCGA-----TTGCTATTCT--GAACAATATTTGATTCGATTCGAGTTT--CCAATCTCGAT---GCTCTT--------------GAACTCC-G----AAATA-CT------------------------------------------C------TATCTAGTGACTGCCCCTGG--A--CT-CT----------AT-C--CACAGATGCTAATTGC--CTCT----------TTTAT-TCTTCTCT---GTT---TC-----TTCCCC-ATA----CACCCGAATATC--TAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGTG------AT
droKik1 scf7180000302639:33900-34083 - T--AA-----------------------------------TTCGAGT---------CTCGTT---GCC-------------------------G----AATAA-CT------------------------------------------CTCCTTTTGCCTTGTGAATACCAATAG--A--TATGC---------CAC-G--AACAGATGCTAATCCC--CACT-------CTCCGTCT-TTCTCTCT---ATT---TC-----TCCCCC-ACA----CATCCGAAC-TC--TAGTGGCGGCGTGAAGTTCTCCGACCTGACCGAAAAAGAGGGTAAGT----------------AGAGAAAGAGGT
droFic1 scf7180000453583:60375-60582 - C--CA-----------TTCT--AATACATAATTAATTCGATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AACTA-CT------------------------------------------C------TCCCTAGTAAATACCAATCG--A--ACTAT----------TT-G--GACCGATGCTAATTCC--CACT----------TGTGTGTTCTCTCT---TTT---TC-----TCCCCCCG-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------AT
droEle1 scf7180000489694:178005-178208 - C--GA-------------------TACACTCTTAATTCCTTTCGAGTT---CCAATCTCGGT---GCTCTT--------------GAACTTT-G----AAATACCT------------------------------------------C------AATCTAGTGAATACCAATAG--A--CTTTT----------ATCG--GAGAGATGCTAATCCC-CCGTT----------TGTGT-TTCTCTCT---GTT---TC-----TCCCCCCG-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAAGGTAAGT----------------AGAG------GC
droRho1 scf7180000779872:72080-72271 - ---------------------------ATTCTTAATTCGACTCGAGTT---CTATTCTCGAT---GCTCTT--------------GAATTCT-C----AAATA-CC------------------------------------------C------TATCTAGTGAATACCAATAG--A--CTTCT----------AT-G--AAATGATGCTAATCTG--CGCT----------T--CT-TTCTCTTT---GTT---TC-----TCCCCC-A-A----CTTTCGAAAATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAAAAAGAGGGTAAGT----------------AGAG------GC
droBia1 scf7180000302292:2367506-2367699 - C--GA-------------------TAC----ATAATTCTACTCGAGTT---CCAATCTCGAT---GCTCTT--------------GAACTCT-G----AAAT--CT------------------------------------------C------TATCTAGTGAATACAAGTAG--T--CCTTT----------TT-GTGAAAAGATTCTAATCCC--AGCT----------TCTGT-TTTTCTCT----TT---TC-----TCCCCC-G-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG--------
droTak1 scf7180000416016:390075-390289 + G-CGA-------------------TAAATACTTAACTCGATTCGAGAT---CCATTCTCGAT---GCTCTTGAATCTTGAATCTTGAACTCT-G----AAATA-CT------------------------------------------C------TATCTAGTGAATACAAGTAG--G--CTTTT----------AT-G--GATAGATGCTAATCCC--CGCT----------TGTGT-TTCTCTCT---GTT---TC-----TCCCCC-G-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GC
droEug1 scf7180000409672:3345423-3345636 - C--GA-------------------TACATACTTAATTCGATTCAAGTT---CCATGCTTGATGATGCTCTT--------------GAACTCTTA----AAATA-CT------------------------------------------C------TATCTAGTGAATACAAAAAT--ATACTTTT------T-TTTC-G--GATAGATGCTAATCCC--TGTTTATTTT----TC--T-T--TCTCT---CTT---TCT----TCCCCC-GAT---TAATCCGAATATG--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GC
dm3 chr2R:14325063-14325270 - C--GA-------------------TACGAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AAATA-CT------------------------------------------T------GATCTAGTGAATACAAATAG--A--ATTTC----------AT-GTG-AATGATGCTAATTCC--CGCT----------TGTCT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---CCATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAGATAGC-AG
droSim2 2r:14994934-14995134 - C--GA-------------------TACGAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AAATA-CT------------------------------------------T------GATCTAGTGAATACAAATAG--A--CTTTC----------AT-GTG-AATGATGCTAATTCC--CGCT----------TGTCT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---CCATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------
droSec2 scaffold_1:11801812-11802012 - C--GA-------------------TACGAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------TAACTTT-G----AAATA-CT------------------------------------------T------GATCTAGTGAATACACATAG--A--CTTTC----------AT-GTG-AATGATGCTAATTCC--CGCT----------TGTCT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---CCATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------
droYak3 2R:14861279-14861501 + TGCGA-------------------TACAAACTTAATTTCATTCGAGTT---CCATTCTCGAT---CCTCTT--------------GAACTTT-A----AACAA-CT------------------------ACTTGGATCGACTTGATTT------GATCTACTGCATACAAATAG--A--CTTTC----------AT-GTG-AATGATGCTAATCCC--CACC----------TTTAT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---ACATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATTG------GT
droEre2 scaffold_4845:8532864-8533062 - C--TT-------------------TACAAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AGATA-CT------------------------------------------T------GCTCTACTGAATACAAATAG--A--TTTTC----------AC-GTG-AATGGTGCTAATCCC--CGCC----------TTTAT-TTCTCTCT---GTT---TC-----TCCCCC-A-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
C--GATGCAAATGCAA--------TGCATATTTGATACCGGTCGAGATCGT-AACCCTCCAT---ACTC----------------------C-GACAGAAATA-TCCTATCTCTATCATACTTATTCGAAACTC--------------G------TATCTAGTAGACGCCACG-------C-TGCACGTCCACCAAT-G--TAAATATGCTAATGCCTTTGTTTCTTTT----TCTCT-CTCTCTCT---GTT---TC-----TCCCCC-G-T----CTCCCGCATATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAA.......................................2612.002200000
.......................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCTGACC............................................2712.002200000
.......................................................................................................................................................................................................................................................................................................................CTGATCTGACCGAGAAAGAGGC.................................2212.002200000
......................................................................................................................................................................................................................................................................................................................TCTGATCTGACCGAGAAA......................................1811.001100000
..................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTGACCGAGA........................................2011.001100000
........................................................................................................................................................................................................................................................................................................GTGGCGTCAAGTTCTCTGATCT................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................GGCGTCAAGTTCTCTGATCT................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGAGGC.................................2411.001000001
...................................................................................................................................................................................................................................................................................................................TTCTCTGATCTGACCGAGAAAG.....................................2211.001000001
.......................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCC................................................2311.001100000
...........................ATATTTGATACCGGTCGAGATC.............................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAAA......................................2711.001100000
.......................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCT................................................2311.001000001
...............................................................................................................................................................................................................................................................................................................CAAGTTCTCTGATCTGACC............................................1911.001100000
...............................................................................................................................................................................................................................................................................................................CAAGTTCTCTGATCTGACCGAGA........................................2311.001100000
............................................................................................................................................................................................................................................................................................................CGTCAAGTTCTCTGATCTGACC............................................2211.001010000
dp5
C--GATGCAAATGCAA--------TGCATATTTGATACCGGTCGAGATCGT-AACCCTCCAT---ACTC----------------------C-GACAGAAATA-TCCTATCTCTATCATACTTATTCGAAACTC--------------G------TATCTAGTAGACGCCACG-------C-TGCACGTCCACCAAT-G--TAAATATGCTAACGCCTTTGTTTCTTTTTCTCTCTCT-CTCTCTCT---GTT---TC-----TCCCCCCG-T----CTCCCGCATATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................TATTTGATACCGGTCGAGATC.............................................................................................................................................................................................................................................................................................................................2112.0020110000000
....................................................................................................................................................................................................................................................................................................AGTGGTGGCGTCAAGTTCTCTGATC.................................................2512.0020000002000
...........................ATATTTGATACCGGTCG..................................................................................................................................................................................................................................................................................................................................1712.0020000000002
.....................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGA....................................2112.0020200000000
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGGTAAGT----------------............2511.0010010000000
.....................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGAGGC.................................2411.0010010000000
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGC.................................2011.0010000100000
.......................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCT................................................2311.0010010000000
.......................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCTG...............................................2411.0010100000000
........................................................................................................................................................................................................................................................................................................................TGATCTGACCGAGAAAGA....................................1811.0010100000000
...........................ATATTTGATACCGGTCGAGAT..............................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAA......................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTGACCGAGAAAGAG...................................2511.0010100000000
.................................................GT-AACCCTCCAT---ACTC----------------------C-GACA.............................................................................................................................................................................................................................................................................2111.0010010000000
..........................................................................................................................................................................................................................................................................................................................ATCTGACCGAGAAAGAGGCG................................2030.3310000000001
droWil2
C--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTT---TTCTCTTCCTCATCCGT---T-TGAATAATCCG----TA--TAGTGGTGGCGTTAAGTTCTCCGATTTGACCGAAAAAGAGGGTAAGTTCTTAAATTATAGACTATAG------ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................GGTGGCGTTAAGTTCTCCGA...................................................2011.00100100
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATTTGACCGAAAAAGAGG..................................2611.00100010
....................................................................................................................................................................................................................................................................................................AGTGGTGGCGTTAAGTTCTCC.....................................................2111.00100010
droVir3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGGCGGCGTCAAGTTCTCCGATCTGACCGAGGATGAGGGTAAGTTC--------------TGAA------CTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGGATGAGG..................................1912.002000000000000000000000000000000000000100000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................ATCTGACCGAGGATGAGG..................................1812.002010000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGGATGAGGC.................................2611.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGGATGAGG..................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAG.........................................1911.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TGACCGAGGATGAGGGTAAGTTC--------------TG..........2511.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGGATG.....................................2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGGATGAGGC.................................2011.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGGATGAG...................................2211.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TCAAGTTCTCCGATCTGACCGAGGATG.....................................2711.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGGAT......................................2011.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
T--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCA------TCCT----------TCTTT-TTATCTCTTTTATC---TC-----TCCCCT---T----TGCTAAAAACTC--TAGCGGAGGCGTCAAGTTCTCAGATCTAACCGAAGATGAGGGTAAGTTC--------------TAAG------AGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................CTCAGATCTAACCGAAGATGA....................................2112.002100001
..........................................................................................................................................................................................................................................................................................................GGCGTCAAGTTCTCAGATCTAACC............................................2411.001100000
................................................................................................................................................................................................................................................................TC-----TCCCCT---T----TGCTAAAAACTC--TAG........................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................CGTCAAGTTCTCAGATCTAACCG...........................................2311.001000100
....................................................................................................................................................................................................................................................................................................................TCTCAGATCTAACCGAAGAT......................................2011.001100000
.........................................................................................................................................................................................................................................................................................................AGGCGTCAAGTTCTCAGATCTAACCGA..........................................2711.001100000
.................................................................................................................................................................................................................................................................C-----TCCCCT---T----TGCTAAAAACTC--TAG........................................................................2311.001100000
droGri2
T--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAT---ATCTTT---TTT-----ATCTCTCCC---C-T----TTTCAATATATT--TAGCGGTGGAGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................GCGGTGGAGTCAAGTTCTCTGATCTG...............................................2611.00110
droAna3
TGCGA-----TTGCTATTCTGTG-AACATATTTAATTCGATTCGAGTCT--CCAATCT--------------------------------CC-G----AGATA-CT------------------------------------------T------TATCTAGTGAATGCCCCCCGAAA--C-TGTATACC------------CAGAATGCTAATTTA--TCTT----------TTTGT-TTTTCTCT---GTT---TC-----TTCCCT-A------TACCCGAATATCTATAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------ACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................CTGATCTGACCGAGAAAGAGGC.................................2211.001100000
....................................................................................................................................................................................................................................................................................................AGTGGCGGCGTCAAGTTCTCTGAT..................................................2411.001000001
..........................................................................................................................................................................................................................................................................................................GGCGTCAAGTTCTCTGATCTGACC............................................2411.001100000
.....................................................................................................................................................................................................................................................................................................GTGGCGGCGTCAAGTTCTCTGATC.................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................GTGGCGGCGTCAAGTTCTCT.....................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................GGCGGCGTCAAGTTCTCTGATCTGACC............................................2711.001010000
.............................................................................................................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAA.......................................2611.001001000
................................................................................................................................................................AGTGAATGCCCCCCGAAA--C-T.......................................................................................................................................................................................2011.001100000
droBip1
TGCGA-----TTGCTATTCT--GAACAATATTTGATTCGATTCGAGTTT--CCAATCTCGAT---GCTCTT--------------GAACTCC-G----AAATA-CT------------------------------------------C------TATCTAGTGACTGCCCCTGG--A--CT-CT----------AT-C--CACAGATGCTAATTGC--CTCT----------TTTAT-TCTTCTCT---GTT---TC-----TTCCCC-ATA----CACCCGAATATC--TAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGTG------ATSizeHit CountTotal NormTotal
No Reads
droKik1
T--AA-----------------------------------TTCGAGT---------CTCGTT---GCC-------------------------G----AATAA-CT------------------------------------------CTCCTTTTGCCTTGTGAATACCAATAG--A--TATGC---------CAC-G--AACAGATGCTAATCCC--CACT-------CTCCGTCT-TTCTCTCT---ATT---TC-----TCCCCC-ACA----CATCCGAAC-TC--TAGTGGCGGCGTGAAGTTCTCCGACCTGACCGAAAAAGAGGGTAAGT----------------AGAGAAAGAGGTSizeHit CountTotal NormTotal
No Reads
droFic1
C--CA-----------TTCT--AATACATAATTAATTCGATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AACTA-CT------------------------------------------C------TCCCTAGTAAATACCAATCG--A--ACTAT----------TT-G--GACCGATGCTAATTCC--CACT----------TGTGTGTTCTCTCT---TTT---TC-----TCCCCCCG-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------ATSizeHit CountTotal NormTotal
No Reads
droEle1
C--GA-------------------TACACTCTTAATTCCTTTCGAGTT---CCAATCTCGGT---GCTCTT--------------GAACTTT-G----AAATACCT------------------------------------------C------AATCTAGTGAATACCAATAG--A--CTTTT----------ATCG--GAGAGATGCTAATCCC-CCGTT----------TGTGT-TTCTCTCT---GTT---TC-----TCCCCCCG-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAAGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droRho1
---------------------------ATTCTTAATTCGACTCGAGTT---CTATTCTCGAT---GCTCTT--------------GAATTCT-C----AAATA-CC------------------------------------------C------TATCTAGTGAATACCAATAG--A--CTTCT----------AT-G--AAATGATGCTAATCTG--CGCT----------T--CT-TTCTCTTT---GTT---TC-----TCCCCC-A-A----CTTTCGAAAATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAAAAAGAGGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droBia1
C--GA-------------------TAC----ATAATTCTACTCGAGTT---CCAATCTCGAT---GCTCTT--------------GAACTCT-G----AAAT--CT------------------------------------------C------TATCTAGTGAATACAAGTAG--T--CCTTT----------TT-GTGAAAAGATTCTAATCCC--AGCT----------TCTGT-TTTTCTCT----TT---TC-----TCCCCC-G-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG--------SizeHit CountTotal NormTotal
No Reads
droTak1
G-CGA-------------------TAAATACTTAACTCGATTCGAGAT---CCATTCTCGAT---GCTCTTGAATCTTGAATCTTGAACTCT-G----AAATA-CT------------------------------------------C------TATCTAGTGAATACAAGTAG--G--CTTTT----------AT-G--GATAGATGCTAATCCC--CGCT----------TGTGT-TTCTCTCT---GTT---TC-----TCCCCC-G-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droEug1
C--GA-------------------TACATACTTAATTCGATTCAAGTT---CCATGCTTGATGATGCTCTT--------------GAACTCTTA----AAATA-CT------------------------------------------C------TATCTAGTGAATACAAAAAT--ATACTTTT------T-TTTC-G--GATAGATGCTAATCCC--TGTTTATTTT----TC--T-T--TCTCT---CTT---TCT----TCCCCC-GAT---TAATCCGAATATG--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
dm3
C--GA-------------------TACGAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AAATA-CT------------------------------------------T------GATCTAGTGAATACAAATAG--A--ATTTC----------AT-GTG-AATGATGCTAATTCC--CGCT----------TGTCT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---CCATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAGATAGC-AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGG..................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001010000000000000000
..........................................................................................................................................................................................................................................................................................................................ATCTGACCGAGAAAGAGG..................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000001000001000000000
.........................................................................................................................................................................................................................................................................................................CGGTGTGAAGTTCTCCGATCTGACCG...........................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CGATCTGACCGAGAAAGAGG..................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................C-----TCCCCC-AAA---CCATCCGAATATC--TA.........................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGAGGC.................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGTGAAGTTCTCCGATCTGACCGAGAAA......................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AGTTCTCCGATCTGACCGAGAAAGA....................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAGGCC................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TGGCGGTGTGAAGTTCTCCGAT..................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATA-CT------------------------------------------T------GATCTAGTGAATACA....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CGGTGTGAAGTTCTCCGATCTGA..............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACCGAGA........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AATATC--TAGTGGCGGTGT...............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CCGATCTGACCGAGAAAGAGG..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAA......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AA---CCATCCGAATATC--TAGA.......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................GCT----------TGTCT-TTCTCTCT---GTT---TC-----TC.....................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCC.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TGGCGGTGTGAAGTTCTCCGATCTG...............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGGT................................2111.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TCTCGAT---GCTCTT--------------GAACTTT-G----T...........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGAGGC.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TCTGACCGAGAAAGAGGGTGCA.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................GCT----------TGTCT-TTCTCTCT---GTT---TC-----TCCCC..................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CTAGTGAATACAAATAG--A--ATT.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAA---CCATCCGAATATC--TAG........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................ATGCTAATTCC--CGCT----------TGTCT-T..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TCT-TTCTCTCT---GTT---TC-----TCCCC..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAG...................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGA..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGTGAAGTTCTCCGATCTGACCGAGAA.......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GAT---GCTCTT--------------GAACTTT-G----AAATA-CT------------------------------------------T------GATC...............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TC----------AT-GTG-AATGATGCTAA.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................ATTCTCGAT---GCTCTT--------------GCC......................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C--GA-------------------TACGAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AAATA-CT------------------------------------------T------GATCTAGTGAATACAAATAG--A--CTTTC----------AT-GTG-AATGATGCTAATTCC--CGCT----------TGTCT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---CCATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................TTCC--CGCT----------TGTCT-TTCTCTCT---GTT---TC-----.......................................................................................................2611.00110000000000000000
.................................................................GCTCTT--------------GAACTTT-G----AAATA-CT------------------------------------------T------...................................................................................................................................................................................................................2211.00100010000000000000
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGA..........................................1811.00101000000000000000
..........................................................................................................................................................................................................................................GTCT-TTCTCTCT---GTT---TC-----TCCCCC-................................................................................................2311.00100100000000000000
......................................................................................................................................................................................................................................................................................................TGGCGGTGTGAAGTTCTCCGATCTG...............................................2511.00100000000001000000
...............................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACCGAGAAAGA....................................2711.00100000000000100000
.............................................GTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-.................................................................................................................................................................................................................................................................................2711.00101000000000000000
............................................................................................................................................................................................................................................................................................................TGTGAAGTTCTCCGATCTGACCGAGA........................................2611.00100000000010000000
......................................................................................................................................................................TACAAATAG--A--CTTTC----------AT-GTG-AATG................................................................................................................................................................2411.00100000000010000000
.......................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGATCTGACC............................................2711.00101000000000000000
droSec2
C--GA-------------------TACGAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------TAACTTT-G----AAATA-CT------------------------------------------T------GATCTAGTGAATACACATAG--A--CTTTC----------AT-GTG-AATGATGCTAATTCC--CGCT----------TGTCT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---CCATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGAAA......................................2711.0010010
.............................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGA........................................2511.0010010
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAA.......................................1911.0011000
.......................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGATCTGAC.............................................2611.0011000
...................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAA.......................................2011.0010100
...............................................................................................................................................................................................................................................................................................TC--TAGTGGCGGTGTGAAGTTC........................................................2111.0010100
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGAG...................................2511.0011000
.............................................GTT---CCATTCTCGAT---GCTCTT--------------T........................................................................................................................................................................................................................................................................................2111.0010010
droYak3
TGCGA-------------------TACAAACTTAATTTCATTCGAGTT---CCATTCTCGAT---CCTCTT--------------GAACTTT-A----AACAA-CT------------------------ACTTGGATCGACTTGATTT------GATCTACTGCATACAAATAG--A--CTTTC----------AT-GTG-AATGATGCTAATCCC--CACC----------TTTAT-TTCTCTCT---GTT---TC-----TCCCCC-AAA---ACATCCGAATATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATTG------GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................CGATCTGACCGAGAAAGAGG..................................2012.00202000000000
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGC.................................2012.00200000020000
...............................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACCGAGA........................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................GTGTGAAGTTCTCCGATCTGA..............................................2111.00100100000000
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGAGGGT................................2811.00100000010000
........................................................................................................CT------------------------ACTTGGATCGACTTGATTT------GAT................................................................................................................................................................................................................2411.00100010000000
.....................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGAAAG.....................................2011.00101000000000
..........................................................................................................................................................................................................................................TTAT-TTCTCTCT---GTT---TC-----TCCC...................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................CTCT---GTT---TC-----TCCCCC-AAA---ACA.......................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGAA.......................................2611.00100100000000
.................................AATTTCATTCGAGTT---CCATTCT....................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................TCCGATCTGACCGAGAAAGAGGC.................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGAAAGAGGC.................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGAGGC.................................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAA......................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGAAAGAG...................................2211.00100000010000
...........................................................................................................................................................................ATAG--A--CTTTC----------AT-GTG-AATGATGCT...........................................................................................................................................................2411.00100000100000
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGAG...................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................GTGTGAAGTTCTCCGATCTGACCGA..........................................2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGCC................................2111.00100000010000
...................................................................TCTT--------------GAACTTT-A----AACAA-CT------------------------ACTTGGATC...................................................................................................................................................................................................................................2811.00110000000000
.......................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGATCTGAC.............................................2611.00110000000000
.......................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGAT..................................................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACC............................................1911.00100100000000
.........................................................................................................................................................................................................................................................................................................CGGTGTGAAGTTCTCCGATCTGACC............................................2511.00100100000000
...................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAGGCC................................2711.00101000000000
....................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGA....................................2211.00100000010000
..................................ATTTCATTCGAGTT---CCATTCTCG..................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEre2
C--TT-------------------TACAAACTTAATTCCATTCGAGTT---CCATTCTCGAT---GCTCTT--------------GAACTTT-G----AGATA-CT------------------------------------------T------GCTCTACTGAATACAAATAG--A--TTTTC----------AC-GTG-AATGGTGCTAATCCC--CGCC----------TTTAT-TTCTCTCT---GTT---TC-----TCCCCC-A-A----CATCCGAATATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAGGCC................................2711.0011000000
..................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGA....................................2411.0010000100
.....................................................................................................................................................................................................................................................................................................GTGGCGGCGTGAAGTTCTC......................................................1911.0010000010
.................................................................................................................................................................................................................................................................................................................AGTTCTCCGATCTGACCGAG.........................................2011.0010000100
....................................................................................................................................................................................................................................................................................................AGTGGCGGCGTGAAGTTCTCC.....................................................2111.0011000000
.................................................................................................................................................................................................................................................................................................................AGTTCTCCGATCTGACCGAGA........................................2111.0010001000
.............................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGAAA......................................2711.0010001000

Generated: 06/08/2015 at 04:27 PM