ID:

dpe_1622

 Coordinate:

scaffold_4:5909998-5910148 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.2 -26.1 -26.1

Flybase annnotation

exon [dper_GLEANR_18636:8]; CDS [Dper\GL16796-cds]; intron [Dper\GL16796-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGCAGCAACAGCAGCTGCATCAGACAGGAGTCTGGCAGCAGCAACAGCAGCAGCCGTCACAACAGTACCCACAGCAGCAGCAGCAACAGACCGCCGGCCAGCAACCATATTGGGGATATAATCAAATGCAGGGTGCGTACGGAGAATAGTTATCAATCCGCATAGATGAAGCAACTAAAATGTTGTCGTTTTTATTTTAGCTGGTTATGGAAACCAGCAGCAGCAAGCCTGGCAGGGTGCCGATCCACAG
**************************************************....((((....((.((((((...(((((.((.((........))..))..))..(((...))).(((...)))...))).)))))))))))).......(((((..........))))).(((((......)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V042
embryo
 M042
female body
 V057
head
...................................................................................GCAACAGACCGCCGGCCAGC.................................................................................................................................................... 20 0 1 4.00 4 4 0 0 0
....................................................................................CAACAGACCGCCGGCCAGC.................................................................................................................................................... 19 0 1 3.00 3 3 0 0 0
.....................................................................................AACAGACCGCCGGCCAGC.................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0
.................................................................................CAGCAACAGACCGCCGGCCAGC.................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0
.........................................................................................GACCGCCGGCCAGCAACC................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0
........................................AGCAACAGCAGCAGCCGTCAC.............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0
...................................................................................GCAACAGACCGCCGGCCAGCAAC................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
................................................................................GCAGCAACAGACCGCCGGCC....................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................CGTCACAACAGTACCCACCGCAGCC........................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0
..................................................................................AGCAACAGACCGCCGGCC....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
...................................................................................GCAACAGACCGCCGGCCAGCAACC................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
......................................GCAGCAACAGCAGCAGCCGTCC............................................................................................................................................................................................... 22 1 4 0.25 1 0 1 0 0
.......AACAGCAGCTGCATCAGCC................................................................................................................................................................................................................................. 19 1 5 0.20 1 0 1 0 0
..........................................................................................................................................................................................TCGTTGGTATTCTAGCTGGTT............................................ 21 3 5 0.20 1 0 0 0 1
...................................................................................................CAGCAAACATATTGGGAA...................................................................................................................................... 18 2 19 0.05 1 0 0 1 0

Anti-sense strand reads

GTCGTCGTTGTCGTCGACGTAGTCTGTCCTCAGACCGTCGTCGTTGTCGTCGTCGGCAGTGTTGTCATGGGTGTCGTCGTCGTCGTTGTCTGGCGGCCGGTCGTTGGTATAACCCCTATATTAGTTTACGTCCCACGCATGCCTCTTATCAATAGTTAGGCGTATCTACTTCGTTGATTTTACAACAGCAAAAATAAAATCGACCAATACCTTTGGTCGTCGTCGTTCGGACCGTCCCACGGCTAGGTGTC
**************************************************....((((....((.((((((...(((((.((.((........))..))..))..(((...))).(((...)))...))).)))))))))))).......(((((..........))))).(((((......)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 M021
embryo
 V111
male body		 V057
head
 M042
female body
 V050
head
...............................................CGGGGTCGGCAGTGTTGTCA........................................................................................................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0
.............................................GTCGTGGTCGGCAGTGTTG........................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.............................................ATCGTGGTCGGCAGTGTTG........................................................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0
.............................................................................................CGGTCGGCCGTTGGTATA............................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0
........................................................GAGTGTTGTCTTGGGTGT................................................................................................................................................................................. 18 2 15 0.07 1 0 0 0 1 0 0
........TGTCGTCGTCGTAGTATGTC............................................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 1 0
.............................................................................................CGGTCGGGCGTTGGTATAC........................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
.............................................................................................CAGCAGGGCGTTGGTATA............................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_4:5909948-5910198 - dpe_1622 -----CAGCAGCAACAGCAGCTG------------------CAT---CAGACAGGAGTCTGGCAGCAGCAACAGCAGCAGCCGTCACAACAGTACCCACAGCAGCAGCAGCAAC-----AGACCGCCGGCCAGCA---ACCATATTGG---GGATATAAT-----------CAAATGCAGGGTG-----------------CGTAC-GGAG-AATAGT---TATC---------AATCCG-----CATAG-A-------T------------G-AAGCAACTAAAATGTTG---------------------------TC-G------TTT------TTATTTT-----AGCT---GGTTATGGAAACCAGCAGCAG---------CAAGCCTGGCAGGGTGC---CGATCCACAG------------
dp5 3:10581437-10581687 - -----CAGCAGCAACAGCAGCTG------------------CAT---CAGACAGGAGTCTGGCAGCAGCAACAGCAGCAGCCGTCACAACAGTACCCACAGCAGCAGCAGCAAC-----AGACCGCCGGCCAGCA---ACCATATTGG---GGATATAAT-----------CAAATGCAGGGTG-----------------CGTAC-GGAG-AATAGT---TATC---------AA-----TCCGCTTAG-A-------T------------A-AAGCAACTAAAATGTTG---------------------------TC-G------TTT------TTATTTT-----AGCT---GGTTATGGAAACCAGCAGCAG---------CAAGCCTGGCAGGGTGC---CGATCCTCAG------------
droWil2 scf2_1100000004513:4821318-4821560 + -----CAGCACCAACAACAACAACA---AACGCCACAACATCAACAACAAGCGGGCGTCTGGCAGCAA------CAACAACAGCCACAACAGTACCAA---CAACAACA-----------GACCGCAGGCCAGCA---ACCCTATTGG---GGATATAAT-----------CAAATGCAAGGTA----------AGTAGTAAGTGT-AAT------ATAATAATAAA---T-------------------------------------------------------TAATGTTGGATTA-------------ATT-------TGA------------ATTTCCGTAATTAACA---GGTTATGGCAACCA---------------GCAAGCCTGGCAAAATGC---TGATCCACAA------------
droVir3 scaffold_12963:647946-648164 + AGTTGCAGCAGCAGCAGCAACAACA---GCAGCAACAGCAGCAG---CAACAG---------------CACCAACAACAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAG-----CAGCA---ACAGCAGCAG---C-------------------------------------------------AGCAC-CAGC-AACAGT-----------------------------CAAC---------------------G-CCACAG-CAAAACGATG---------------------------TC-T------ACC------TCAG------TCAGCAGCAAC--TTGCATACCAGCAGCAGCAACAGCAACAG--C--------TGG---CGA-CCACAG------------
droMoj3 scaffold_6473:9275804-9276028 + -----CAGCAGCAACAGCAACAGCA---ACAGCAGCAGCAGCAA------CAG---------------CAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGGAGCAACAGAAACAGCAG-------------------CAGG---GGCTATAACTGCAGGAGCAGCAAATACAAGAGCAACGGCAGCAGG-----A----------------------------------------------------------------------G-AAGCAGCAACAGCAGCA---------------------------AC-A------CCATCAACCTCA-------TCAGCGGCA--------ACACCAGCAGCAGCAACAATAACAG--C---------AA---TT-ACAACAG------------
droGri2 scaffold_271:1697-1936 - -----CAGCAGCAGCGGCAGCAGCA---GCAGCAGCAGCGGCAG------CAGCGGCAGCGGCAGCGG------CAGCAGCAGCAGCGGCAGCAGCAG---CAGCGGCAGCGG------CAGCAGC--------------AGCATCAG---C--------------AGCAGCAAAAACGGCAGCACTAACAGCAGC-----AGCAGCAGC-A--GCGT---CAAC--------------A-T---CATCA-GCAGCAGCAGCAGCAGTTAAAA-CAGCAG-CA--------------------------------------------------------AC--------ATCAGCAGC--AGAAAAAACAGCAGCAG---------CA------ACA---------------GCAGCAGCAGCTAAAA
droAna3 scaffold_13266:6887536-6887775 - -----CAGCC---------ACAACA---GGCGCAGCAACACCAG---CAGACAAGCGCCTGGCAGACG------CAACAGCAGGCGCAGCCGTACCAG---CAGCAGCAACA--------GTCCACCGGCCAGCAGCAGCAGTATTGG---GGCTACAAT-----------CAAATGCAAGGTG-----------------AGTGC-GATG-A-----AGCTATATA---TTG-GTT------------------------------------------------------CTGAAAAAATTC---TAAACC--------T---A--TT----------TCCAC-----AGCT---GGTTATGGCAACCAACAACAGCAACAACAACAGGCCTGGCAGGGAGC---TGAT------------------
droBip1 scf7180000396423:426375-426623 - -----CAGCACCAGCCGC---AACA---GGCACAGCAACACCAG---CAGACGAGCGCCTGGCAGACG------CAACAGCAGGCGCAACCGTACCAG---CAGCAGCAGCAAC-----AGTCCGCCGGCCAGCA---GCAGTATTGG---GGCTATAAT-----------CAAATCCAAGGTG-----------------AGCGC-CAAG-A-----AACTATATT---TTC-ATC------------------------------------------------------CTGGAACAAGTCATCTAACAA-AC----TG---A---------------TTAT-----AGCT---GGTTATGGAAACCAACAACCACA------ACAGGCCTGGCAGGGAGC---TGATCAGCAA------------
droKik1 scf7180000302476:2209050-2209312 + -----CAGCACCAG------CAGCA---GGCGCCGCAGCATCAA---CAGACTGGTGTCTGGCAGACACAGCAGCAGCAGCAGTCACAACAGTACCAACAGCAGCATCAGCAGC-----AGACCGCGGGCCAGCAACAACAATACTGGGGGGGATATAAT-----------CAAATGGCTGGTA-----------------AGTGC-T-------TG------CATTCCCTTGCGTTCCG-AATTCTTG--------------------------------T-------------------------AATGA--A---------A--TT----------GTGCC--CGCAGCA---GGCTATGGCACCCAACAACA---------ACAGGCCTGGCAGGGCGCCGCCGATCCGCAGCAGCAG------
droFic1 scf7180000453811:455804-456047 + -----CAGCACCATCAGCAGCAACA---GGCGCCGCAGCATCAG---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAG---CAGCCACAGCAAG-----CGGCAGCGGGCCAGCA---ACAATATTGG---GCCTACAAC-----------CAAATGCAGGGTA-----------------CGTAT-AAACA--TTGC-----TC----------------ATTTATTGGG---------------------GTAACCCACTTA-------------------------TGTATT----TT---ATTAT----------TCGCC-----CACA---GGTTATGGCAACCA---------------ACAGGCTTGGCAGAGCGC---CGATCCCCAG------------
droEle1 scf7180000491282:253228-253486 + -----CAACACCATCAGCAGCAGCAGCAGACGACGCAGCATCAG---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAG---CAGACGCAGCAAA-----CTGCGGCGGGCCAGCA---ACCATACTGG---GGCTATAAT-----------CAAATGCAGGGTA-----------------AGTAA-AGC-AACGTGT-----GT-------G-TGTGCTGTC--CTGGG-A-------T------------GACAACAACTGA-------------------------ATAATT----TG---GTGGTTT------ACCTGCC-----CACA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGCGC---CGATCCGCAG------------
droRho1 scf7180000780086:24112-24347 + -----CAGCA---------GCAACA---GACGGCGCAGCATCAG---CAAACGGGTGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAG---CAGCCGCAGCAAA-----CGGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAT-----------CAAGTGCAGGGTA-----------------AGTAC-GGC-A--TTGT-----GT--------------G-AATTCTTGGGT-------T------------G-CAAGATCTAA-------------------------AGTATT----TG---ATGGT----------TTACC-----AACA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGCGC---CGATCCGCAG------------
droBia1 scf7180000302291:1172583-1172826 - -----CATCA------GCAACAACA---GGCGCCGCAGCATCAG---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAGCCTCAGCAAG-----CGGCGGCGGGCCAACA---ACAATATTGG---GCCTACAAT-----------CAAATGCAGGGTG-----------------AGTAC-GGT-ATTGGAT---GGT--------G-AGTACG-----GTAAT-A-----G-T------------G-CACAAACTAA-------------------------CGAATT----CG---GTTGT----------TTGCC-----AACA---GGTTACGGTAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------
droTak1 scf7180000415379:194337-194570 + -----CAACACCATCAGCAGCAGCA---GACGCCGCAGCATC------AGACGGGCGTCTGGCAGACT------CAGCAGCCGGCACAACAGTACCAA---CAGCCTCAGCAGG-----CGGCGGCGGGCCAACA---ACAATATTGG---GCCTATAAT-----------CAAATGCAGGGTG-----------------AGTAC-AGC-A--TTGC-----GC--------------G-A-TTCTTAAG--------A------------G-CAACAACTAA-------------------------AGG--T---------A--TT----------TTGCC-----CGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------
droEug1 scf7180000409663:846564-846806 + -----CAACACCAACAGCAGCAACA---GGCGCCGC---ATCAG---CAAACGGGCGTCTGGCAAACT------CAGCAGCAGTCACAACAGTACCAA---CAGCCTCAGCAAT-----CGGCAGCAGGTCAACA---ACAATATTGG---GCCTATAAT-----------CAAATGCAGGGTA----------AG-----AGTAAGAGT-A--TTGT---GATC--------------G-T---CTTTT-A-------T------------A-GAACGACTTA-------------------------CTTATT----TG---ATGGT----------TTGAC-----AACA---GGTTATGGAAACCA---------------ACAGGCTTGGCAGAGTGC---TGATCCGCAA------------
dm3 chr2R:14520589-14520829 - -----CATCA------GCAACAGCA---GGCGCCGCAGCATCAA---CAAACGGGCATCTGGCAGACT------CAGCAGCAGTCACAACAATACCAA---CAACCTCAGCAAG-----CAGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAGAGTA-----------------AGTGA-CGC-A--GTGT-----TC--------------G-ACTGCTTAAG--------G------------G-CGAAGACTAT-----------------------A-CGAGTTA--T-GTTGA------------TTCTCCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------
droSim2 2r:15167802-15168044 - -----CAACATCATCAGC---AGCA---GGCGCCGCAGCATCAA---CAAACGAGCATCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAAGGTA-----------------AGTGA-CGC-A--GTGT-----TC--------------G-ACTGCTTAAG---------------------GCCTCAGACTGT-----------------------A-CGAGTT----CGTTGA------------TTCTCCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------
droSec2 scaffold_1:12028311-12028553 - -----CAACATCATCAGC---AGCA---GGCGCCGCAGCATCAA---CAAACGAGCATCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAGGGTA-----------------AGTGA-CGC-A--GTGT-----TC--------------G-ACTGCTTAAG---------------------GCCAAAGACTAT-----------------------A-CGAGTT----GGTTGA------------TTCTCCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------
droYak3 2R:14682888-14683135 + -----CAGCACCATCAGCAGCAGCA---GGCGCCGCAGCATCAA---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGTCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAGGGTA-----------------TGTAA-CGC-A--GAGT-----TC--------------G-ACTGCTCAGC---------------------G-CTATAACTAT-----------------------A-AGTGCTCGCTCT---TTGGT----------CTTCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCGTGGCAGAGTGC---CGATCCGCAG------------
droEre2 scaffold_4845:8708390-8708637 - -----CAACACCATCAGCAGCAGCA---GGCGCCGCAACATCAA---CAAACTGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGTCAGCA---ACAATATTGG---GCCTATAAC-----------CAAATGCAGGGTA-----------------TGTAG-CGC-A--GTTT-----CC--------------G-ACTGCCCAAG---------------------G-CTAAAACTAT-----------------------A-AGTGCTCGTTCG---ATGGT----------TTTCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
-----CAGCAGCAACAGCAGCTG------------------CAT---CAGACAGGAGTCTGGCAGCAGCAACAGCAGCAGCCGTCACAACAGTACCCACAGCAGCAGCAGCAAC-----AGACCGCCGGCCAGCA---ACCATATTGG---GGATATAAT-----------CAAATGCAGGGTG-----------------CGTAC-GGAG-AATAGT---TATC---------AATCCG-----CATAG-A-------T------------G-AAGCAACTAAAATGTTG---------------------------TC-G------TTT------TTATTTT-----AGCT---GGTTATGGAAACCAGCAGCAG---------CAAGCCTGGCAGGGTGC---CGATCCACAG------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................GCAAC-----AGACCGCCGGCCAGC......................................................................................................................................................................................................................................................................................................2014.004400000
..............................................................................................................CAAC-----AGACCGCCGGCCAGC......................................................................................................................................................................................................................................................................................................1913.003300000
...............................................................................................................AAC-----AGACCGCCGGCCAGC......................................................................................................................................................................................................................................................................................................1812.002200000
...........................................................................................................CAGCAAC-----AGACCGCCGGCCAGC......................................................................................................................................................................................................................................................................................................2212.002200000
........................................................................................................................GACCGCCGGCCAGCA---ACC...............................................................................................................................................................................................................................................................................................1811.001001000
..................................................................AGCAACAGCAGCAGCCGTCAC.....................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................GCAAC-----AGACCGCCGGCCAGCA---AC................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................GCAGCAAC-----AGACCGCCGGCC.........................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................AGCAAC-----AGACCGCCGGCC.........................................................................................................................................................................................................................................................................................................1811.001100000
.............................................................................................................GCAAC-----AGACCGCCGGCCAGCA---ACC...............................................................................................................................................................................................................................................................................................2411.001100000
................................................................GCAGCAACAGCAGCAGCCGTCC......................................................................................................................................................................................................................................................................................................................................................2240.251001000
dp5
-----CAGCAGCAACAGCAGCTG------------------CAT---CAGACAGGAGTCTGGCAGCAGCAACAGCAGCAGCCGTCACAACAGTACCCACAGCAGCAGCAGCAAC-----AGACCGCCGGCCAGCA---ACCATATTGG---GGATATAAT-----------CAAATGCAGGGTG-----------------CGTAC-GGAG-AATAGT---TATC---------AA-----TCCGCTTAG-A-------T------------A-AAGCAACTAAAATGTTG---------------------------TC-G------TTT------TTATTTT-----AGCT---GGTTATGGAAACCAGCAGCAG---------CAAGCCTGGCAGGGTGC---CGATCCTCAG------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................GCAGCAACAGCAGCAGCCGTC.......................................................................................................................................................................................................................................................................................................................................................2121.0020110000000
.....................................................................AACAGCAGCAGCCGTCACAACAGTACCC...........................................................................................................................................................................................................................................................................................................................................2811.0010000100000
................................................................................CCGTCACAACAGTACCCACAGCAG....................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................................AT---CAGACAGGAGTCTGGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
.........AGCAACAGCAGCTG------------------CAT---CAGA.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................GTTATGGAAACCAGCAGCAG---------CAA.......................................2311.0010000100000
.........AGCAACAGCAGCTG------------------CAT---CA...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................GGTTATGGAAACCAGCAGCAG---------CAAGC.....................................2611.0010100000000
................................................................GCAGCAACAGCAGCAGCCGTCA......................................................................................................................................................................................................................................................................................................................................................2221.0020200000000
................GCAGCTG------------------CAT---CAGACAGGAGTCTGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
..................................................ACAGGAGTCTGGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000001
.............ACAGCAGCTG------------------CAT---CAGACA.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
................................................................................CCGTCACAACAGTACCCACAGCA.....................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGCAGGGTGC---CGATCCTC..............2211.0010000100000
.........................................................................................................................................................ATATAAT-----------CAAATGCAGGCC.....................................................................................................................................................................................................................................................1920.5010010000000
droWil2
-----CAGCACCAACAACAACAACA---AACGCCACAACATCAACAACAAGCGGGCGTCTGGCAGCAA------CAACAACAGCCACAACAGTACCAA---CAACAACA-----------GACCGCAGGCCAGCA---ACCCTATTGG---GGATATAAT-----------CAAATGCAAGGTA----------AGTAGTAAGTGT-AAT------ATAATAATAAA---T-------------------------------------------------------TAATGTTGGATTA-------------ATT-------TGA------------ATTTCCGTAATTAACA---GGTTATGGCAACCA---------------GCAAGCCTGGCAAAATGC---TGATCCACAA------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................ACAACATCAACAACAAGCGGGC....................................................................................................................................................................................................................................................................................................................................................................................2213.00330000
.......................................................................................AACAGTACCAA---CAACAACA-----------GACCGCAGGC..........................................................................................................................................................................................................................................................................................................2912.00220000
.....................................................................................................................................................................................................................................................................................................................................................................GTTATGGCAACCA---------------GCAAGCCT...................................2111.00100010
...................................................CGGGCGTCTGGCAGCAA------C.................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................CTATTGG---GGATATAAT-----------CAAATGCAAG.......................................................................................................................................................................................................................................................2611.00100010
.................................................AGCGGGCGTCTGGCAGCAA------C.................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......................................................................................................ACAACA-----------GACCGCAGGCCA........................................................................................................................................................................................................................................................................................................1811.00100010
............................................CAACAAGCGGGCGTCTGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................................CAACATCAACAACAAGCGGGC....................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
....................................AACATCAACAACAAGCGGGC....................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
droVir3
AGTTGCAGCAGCAGCAGCAACAACA---GCAGCAACAGCAGCAG---CAACAG---------------CACCAACAACAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAG-----CAGCA---ACAGCAGCAG---C-------------------------------------------------AGCAC-CAGC-AACAGT-----------------------------CAAC---------------------G-CCACAG-CAAAACGATG---------------------------TC-T------ACC------TCAG------TCAGCAGCAAC--TTGCATACCAGCAGCAGCAACAGCAACAG--C--------TGG---CGA-CCACAG------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................G-CCACAG-CAAAACGATG---------------------------TC-T------....................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................................................................................................TACCAGCAGCAGCAACAGCAACA........................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAG-CAAAACGATG---------------------------TC-T------ACC------TCAG------TCA..............................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TCAG------TCAGCAGCAAC--TTGCATACCA..........................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................AGCAG---CAACAG---------------CACCAACAACA.............................................................................................................................................................................................................................................................................................................................................................2230.331000000000000000000000000010000000000000000000000000000000000000
..................................ACAGCAGCAG---CAACAG---------------CACC....................................................................................................................................................................................................................................................................................................................................................................2030.331000000000000000000000000000001000000000000000000000000000000000
....................................................G---------------CACCAACAACAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................2140.251000000000000000000000100000000000000000000000000000000000000000
................................CAACAGCAGCAG---CAACAG---------------CAC.....................................................................................................................................................................................................................................................................................................................................................................2140.251000000000000000000000000000000010000000000000000000000000000000
...............................................................................................CAACAGCAGCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................19200.102000000000000000000010100000000000000000000000000000000000000000
.........AGCAGCAGCAACAACA---GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................22200.102001000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................A---ACAGCAGCAG---C-------------------------------------------------AGCAC-CAGC-........................................................................................................................................................................................................................21100.101000100000000000000000000000000000000000000000000000000000000000
................................................................................CAGCAACAACAGCAGCAACAGCAGC...................................................................................................................................................................................................................................................................................................................................25200.102000000000000000001000000000000000000000000000000000000000000010
..............................................................................AGCAGCAACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000000000010010000000000000000000000000
.....................................................................................................................AGCAGCAG-----CAGCA---ACAGCA............................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AGCA---ACAGCAGCAG---C-------------------------------------------------AGCA...............................................................................................................................................................................................................................19200.102000000000000000000000000000000000000200000000000000000000000000
....................................................................................AACAACAGCAGCAACAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................27200.102002000000000000000000000000000000000000000000000000000000000000
.....................AACA---GCAGCAACAGCAGCAG---CA...........................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000100000000000000000000000000000000000000000000
......................ACA---GCAGCAACAGCAGCAG---CAA..........................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000100000000000000000000000000000000000000000000000
.......................CA---GCAGCAACAGCAGCAG---CAACA........................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................CAACAGCAGCAGCAG-----CAGCA---A.................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
.................CAACAACA---GCAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................GCA---ACAGCAGCAG---C-------------------------------------------------AGCAC-.............................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
............AGCAGCAACAACA---GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
....................................................................................AACAACAGCAGCAACAGCAGCAGC................................................................................................................................................................................................................................................................................................................................24200.051000000000000100000000000000000000000000000000000000000000000000
...............AGCAACAACA---GCAGCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAG--C--------T...........................19200.051000000000000000001000000000000000000000000000000000000000000000
.............................................................................CAGCAGCAACAACAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCAACAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CA---ACAGCAGCAG---C-------------------------------------------------AGCAC-CA...........................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................ACAGCAGCAACAGCAGCAGCAGCAACA.........................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
...........CAGCAGCAACAACA---GCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
.......................................................................................AACAGCAGCAACAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................24200.051000000000000000100000000000000000000000000000000000000000000000
...............................................................................GCAGCAACAACAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCAACAGCAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
...................................................................................................AGCAGCAGCAGCAACAGCAGCA...................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000001000000000000000000000000000
..............CAGCAACAACA---GCAGCAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000010
...........................................................................................GCAGCAACAGCAGCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................CAACAGCAGCAGCAGCAACAGCAGC....................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.......................CA---GCAGCAACAGCAGCAG---CA...........................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000100000000000000000000000000000000000
.........AGCAGCAGCAACAACA---GCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
............AGCAGCAACAACA---GCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................AGCAGCAACAGCAGCAGCAG-----CAGCA---A.................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
........CAGCAGCAGCAACAACA---GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000001000000000000000000000000000000
............................................................................ACAGCAGCAACAACAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................23200.051000000000000000010000000000000000000000000000000000000000000000
......................ACA---GCAGCAACAGCAGCAG---CAAC.........................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................AGCAGCAGCAACAGCAGCA...................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
................GCAACAACA---GCAGCAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..........GCAGCAGCAACAACA---GCAG............................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
........CAGCAGCAGCAACAACA---GCA.............................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000100000000000000000000000000000000000000000
....................................................................................................GCAGCAGCAGCAACAGCAGCA...................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
..............................................................................AGCAGCAACAACAGCAGCAACAGCA.....................................................................................................................................................................................................................................................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
.......................................................................................AACAGCAGCAACAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000010000000000000000000000000000000000000000
...........................................................................AACAGCAGCAACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................AACAACAGCAGCAACAGCAGC...................................................................................................................................................................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
.................................................................................AGCAACAACAGCAGCAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000010000000000000000000000000000000000000000
........................A---GCAGCAACAGCAGCAG---CAACAG---------------CA......................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................GCAGCAACAGCAGCAGCAGCAACAG........................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................ACAGCAGCAGCAG-----CAGCA---ACAGCAGC..........................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CAGCAG-----CAGCA---ACAGCAGCAG---.....................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................CAG-----CAGCA---ACAGCAGCAG---C-------------------------------------------------A..................................................................................................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................CAACAGCAGCAGCAG-----CAGCA---ACAGC.............................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCAACAGCAGCAGCAGCAA...........................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
....................CAACA---GCAGCAACAGCAGCAG---CAAC.........................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................CAGCAACAGCAGCAGCAG-----CAGCA---AC................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
.................................................................................AGCAACAACAGCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................AGCAGCAGCAG-----CAGCA---ACAGCAGCAG---.....................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................AGCAGCAACAGCAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.................CAACAACA---GCAGCAACAGCAGCAG---CA...........................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000001000000000000000000000000000000000000000000000
............................GCAGCAACAGCAGCAG---CAAC.........................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................GCAGCAGCAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................AGCAGCAGCAACAGCAGC....................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................AGCAACAGCAGCAGCAGCAACAGCA......................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................GCAGCAACAGCAGCAGCAG-----CAGCA---A.................................................................................................................................................................................................................................................................................................25200.051000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................GCAGCAG-----CAGCA---ACAGCAGC..........................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCAACAGCAGCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................22200.051000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................AGCAGCAACAGCAGCAGCAG-----C.........................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.....................AACA---GCAGCAACAGCAGCAG---CAAC.........................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..........GCAGCAGCAACAACA---GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
...............................................................................................CAACAGCAGCAGCAGCAACAGCAGCAGCA................................................................................................................................................................................................................................................................................................................29200.051000000000000000000000000000000000001000000000000000000000000000
..........................................................................CAACAGCAGCAACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
..................AACAACA---GCAGCAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................GCAACAGCAGCAGCAG-----CAGCA---AC................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..............CAGCAACAACA---GCAGCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
........................................................................................................CAGCAGCAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
...............AGCAACAACA---GCAGCAACAGCAGCAG---CA...........................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000010000000000000000000000000000000000000000
..................AACAACA---GCAGCAACAGCAGCAG---C............................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000100000000000000000000000000000000000000000000000000
...................................................................................CAACAACAGCAGCAACAGCAGCA..................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
droMoj3
-----CAGCAGCAACAGCAACAGCA---ACAGCAGCAGCAGCAA------CAG---------------CAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGGAGCAACAGAAACAGCAG-------------------CAGG---GGCTATAACTGCAGGAGCAGCAAATACAAGAGCAACGGCAGCAGG-----A----------------------------------------------------------------------G-AAGCAGCAACAGCAGCA---------------------------AC-A------CCATCAACCTCA-------TCAGCGGCA--------ACACCAGCAGCAGCAACAATAACAG--C---------AA---TT-ACAACAG------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................GCAGCAGCAA------CAG---------------CAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................23200.102200000
..................................................................................GCAGCAGCAGCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................20200.102200000
...............................................................................ACAGCAGCAGCAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................21200.102000020
......................................................................GCAGCAGCAACAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................23200.102200000
...........CAACAGCAACAGCA---ACAGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.....CAGCAGCAACAGCAACAGCA---ACA.............................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
........................................................................AGCAGCAACAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................22200.051100000
.......................CA---ACAGCAGCAGCAGCAA------CAG---------------CAGCA...................................................................................................................................................................................................................................................................................................................................................................26200.051000010
..............................AGCAGCAGCAGCAA------CAG---------------CAGCA...................................................................................................................................................................................................................................................................................................................................................................22200.051000010
...............AGCAACAGCA---ACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
..................................................................................GCAGCAGCAGCAGCAACAGCA.....................................................................................................................................................................................................................................................................................................................................21200.051001000
.................CAACAGCA---ACAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
...............................................................................ACAGCAGCAGCAGCAGCAACAGCA.....................................................................................................................................................................................................................................................................................................................................24200.051100000
...........CAACAGCAACAGCA---ACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..........................................AA------CAG---------------CAGCAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................................19200.051010000
..........................................................................CAGCAACAGCAGCAGCAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................26200.051000010
.............ACAGCAACAGCA---ACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
....................................................G---------------CAGCAGCAGCAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................20200.051100000
..............................................................................AACAGCAGCAGCAGCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................24200.051100000
....................................AGCAGCAA------CAG---------------CAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................22200.051100000
droGri2
-----CAGCAGCAGCGGCAGCAGCA---GCAGCAGCAGCGGCAG------CAGCGGCAGCGGCAGCGG------CAGCAGCAGCAGCGGCAGCAGCAG---CAGCGGCAGCGG------CAGCAGC--------------AGCATCAG---C--------------AGCAGCAAAAACGGCAGCACTAACAGCAGC-----AGCAGCAGC-A--GCGT---CAAC--------------A-T---CATCA-GCAGCAGCAGCAGCAGTTAAAA-CAGCAG-CA--------------------------------------------------------AC--------ATCAGCAGC--AGAAAAAACAGCAGCAG---------CA------ACA---------------GCAGCAGCAGCTAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
-----CAGCC---------ACAACA---GGCGCAGCAACACCAG---CAGACAAGCGCCTGGCAGACG------CAACAGCAGGCGCAGCCGTACCAG---CAGCAGCAACA--------GTCCACCGGCCAGCAGCAGCAGTATTGG---GGCTACAAT-----------CAAATGCAAGGTG-----------------AGTGC-GATG-A-----AGCTATATA---TTG-GTT------------------------------------------------------CTGAAAAAATTC---TAAACC--------T---A--TT----------TCCAC-----AGCT---GGTTATGGCAACCAACAACAGCAACAACAACAGGCCTGGCAGGGAGC---TGAT------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................GCGCAGCAACACCAG---CAGACAAGC....................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................ACAACAGGCCTGGCAGGGAGC---T.....................2211.001100000
...................ACAACA---GGCGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................................................AGCAACA--------GTCCACCGGCCA........................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................ACAGCAGGCGCAGCCGTACCAG---CA.....................................................................................................................................................................................................................................................................................................................................2411.001001000
.................................................................................................G---CAGCAGCAACA--------GTCCACCGGCCAC.......................................................................................................................................................................................................................................................................................................2511.001010000
...........................................................................................GTACCAG---CAGCAGCAACA--------GTC.................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................G---CAGCAGCAACA--------GTCCACC.............................................................................................................................................................................................................................................................................................................1911.001010000
................................................AGACAAGCGCCTGGCAGACG------CAACAGC...........................................................................................................................................................................................................................................................................................................................................................2711.001010000
...............................GCAGCAACACCAG---CAGACAA......................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
-----CAGCACCAGCCGC---AACA---GGCACAGCAACACCAG---CAGACGAGCGCCTGGCAGACG------CAACAGCAGGCGCAACCGTACCAG---CAGCAGCAGCAAC-----AGTCCGCCGGCCAGCA---GCAGTATTGG---GGCTATAAT-----------CAAATCCAAGGTG-----------------AGCGC-CAAG-A-----AACTATATT---TTC-ATC------------------------------------------------------CTGGAACAAGTCATCTAACAA-AC----TG---A---------------TTAT-----AGCT---GGTTATGGAAACCAACAACCACA------ACAGGCCTGGCAGGGAGC---TGATCAGCAA------------SizeHit CountTotal NormTotal
No Reads
droKik1
-----CAGCACCAG------CAGCA---GGCGCCGCAGCATCAA---CAGACTGGTGTCTGGCAGACACAGCAGCAGCAGCAGTCACAACAGTACCAACAGCAGCATCAGCAGC-----AGACCGCGGGCCAGCAACAACAATACTGGGGGGGATATAAT-----------CAAATGGCTGGTA-----------------AGTGC-T-------TG------CATTCCCTTGCGTTCCG-AATTCTTG--------------------------------T-------------------------AATGA--A---------A--TT----------GTGCC--CGCAGCA---GGCTATGGCACCCAACAACA---------ACAGGCCTGGCAGGGCGCCGCCGATCCGCAGCAGCAG------SizeHit CountTotal NormTotal
No Reads
droFic1
-----CAGCACCATCAGCAGCAACA---GGCGCCGCAGCATCAG---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAG---CAGCCACAGCAAG-----CGGCAGCGGGCCAGCA---ACAATATTGG---GCCTACAAC-----------CAAATGCAGGGTA-----------------CGTAT-AAACA--TTGC-----TC----------------ATTTATTGGG---------------------GTAACCCACTTA-------------------------TGTATT----TT---ATTAT----------TCGCC-----CACA---GGTTATGGCAACCA---------------ACAGGCTTGGCAGAGCGC---CGATCCCCAG------------SizeHit CountTotal NormTotal
No Reads
droEle1
-----CAACACCATCAGCAGCAGCAGCAGACGACGCAGCATCAG---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAG---CAGACGCAGCAAA-----CTGCGGCGGGCCAGCA---ACCATACTGG---GGCTATAAT-----------CAAATGCAGGGTA-----------------AGTAA-AGC-AACGTGT-----GT-------G-TGTGCTGTC--CTGGG-A-------T------------GACAACAACTGA-------------------------ATAATT----TG---GTGGTTT------ACCTGCC-----CACA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGCGC---CGATCCGCAG------------SizeHit CountTotal NormTotal
No Reads
droRho1
-----CAGCA---------GCAACA---GACGGCGCAGCATCAG---CAAACGGGTGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAG---CAGCCGCAGCAAA-----CGGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAT-----------CAAGTGCAGGGTA-----------------AGTAC-GGC-A--TTGT-----GT--------------G-AATTCTTGGGT-------T------------G-CAAGATCTAA-------------------------AGTATT----TG---ATGGT----------TTACC-----AACA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGCGC---CGATCCGCAG------------SizeHit CountTotal NormTotal
No Reads
droBia1
-----CATCA------GCAACAACA---GGCGCCGCAGCATCAG---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAGCCTCAGCAAG-----CGGCGGCGGGCCAACA---ACAATATTGG---GCCTACAAT-----------CAAATGCAGGGTG-----------------AGTAC-GGT-ATTGGAT---GGT--------G-AGTACG-----GTAAT-A-----G-T------------G-CACAAACTAA-------------------------CGAATT----CG---GTTGT----------TTGCC-----AACA---GGTTACGGTAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------SizeHit CountTotal NormTotal
No Reads
droTak1
-----CAACACCATCAGCAGCAGCA---GACGCCGCAGCATC------AGACGGGCGTCTGGCAGACT------CAGCAGCCGGCACAACAGTACCAA---CAGCCTCAGCAGG-----CGGCGGCGGGCCAACA---ACAATATTGG---GCCTATAAT-----------CAAATGCAGGGTG-----------------AGTAC-AGC-A--TTGC-----GC--------------G-A-TTCTTAAG--------A------------G-CAACAACTAA-------------------------AGG--T---------A--TT----------TTGCC-----CGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------SizeHit CountTotal NormTotal
No Reads
droEug1
-----CAACACCAACAGCAGCAACA---GGCGCCGC---ATCAG---CAAACGGGCGTCTGGCAAACT------CAGCAGCAGTCACAACAGTACCAA---CAGCCTCAGCAAT-----CGGCAGCAGGTCAACA---ACAATATTGG---GCCTATAAT-----------CAAATGCAGGGTA----------AG-----AGTAAGAGT-A--TTGT---GATC--------------G-T---CTTTT-A-------T------------A-GAACGACTTA-------------------------CTTATT----TG---ATGGT----------TTGAC-----AACA---GGTTATGGAAACCA---------------ACAGGCTTGGCAGAGTGC---TGATCCGCAA------------SizeHit CountTotal NormTotal
No Reads
dm3
-----CATCA------GCAACAGCA---GGCGCCGCAGCATCAA---CAAACGGGCATCTGGCAGACT------CAGCAGCAGTCACAACAATACCAA---CAACCTCAGCAAG-----CAGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAGAGTA-----------------AGTGA-CGC-A--GTGT-----TC--------------G-ACTGCTTAAG--------G------------G-CGAAGACTAT-----------------------A-CGAGTTA--T-GTTGA------------TTCTCCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................CGGGCATCTGGCAGACT------CAGCAGCAGT........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GCAGCAGTCACAACAATACCAA---CA.....................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................AAG-----CAGCGGCGGGCCAGC......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCATCTGGCAGACT------CAGCAGCAGTC.......................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CCTGGCAGAGTGC---CGATCCG...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GGCATCTGGCAGACT------CAGCAGCAGT........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ATACTGG---GCCTATAAC-----------CAAATGCAGACA.....................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACAGGCCTGGCAGAGTGC---CGATC.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACAGGCCTGGCAGAGTGC---C.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................TATGGCAACCA---------------ACAGGCCTGGCAGAGT...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCATCTGGCAGACT------CAGCAGCAG.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CTCAGCAAG-----CAGCGGCGGGCCAGC......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TCAA---CAAACGGGCATCTGGCAGAC.........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TACTGG---GCCTATAAC-----------CAAATGCAGA.......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATCA------GCAACAGCA---GGCGCCGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................TATAAC-----------CAAATGCAGAGTA-----------------AG.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................GCATCAA---CAAACGGGCATCTGGCAGAC.........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CAACCA---------------ACAGGCCTGGCAGAGTGC---CGT...................2711.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AACCA---------------ACAGGCCTGGCAGAGTGC---CGC...................2611.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGCCGCAGCATCAA---CAAACGGGCA...................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCCTGGCAGAGTGC---C.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ACAATACTGG---GCCTATAAC-----------CAAATGCAGA.......................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCAACCA---------------ACAGGCCTGGCA...............................1911.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TACCAA---CAACCTCAGCAAG-----CAGCGGC..............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................ACAGCA---GGCGCCGCAGCAT...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GTCACAACAATACCAA---CAACCTCAGCAA...........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................A---CAAACGGGCATCTGGCAGACT------CAGCC.............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAACGGGCATCTGGCAGACT------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................A---ACAATACTGG---GCCTATAAC-----------CAA..............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ATCTGGCAGACT------CAGCAGCAG.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGGCAGAGTGC---CGATCC................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........A------GCAACAGCA---GGCGCCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................AACAGCA---GGCGCCGCAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................GCAACAGCA---GGCGCCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-----CAACATCATCAGC---AGCA---GGCGCCGCAGCATCAA---CAAACGAGCATCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAAGGTA-----------------AGTGA-CGC-A--GTGT-----TC--------------G-ACTGCTTAAG---------------------GCCTCAGACTGT-----------------------A-CGAGTT----CGTTGA------------TTCTCCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................A---CAAACGAGCATCTGGCAGACT------C.................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
...........................................................................................................CAGCAAG-----CAGCGGCGGGC..........................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.................................................AACGAGCATCTGGCAGACT------CAGCAG............................................................................................................................................................................................................................................................................................................................................................2512.00220000000000000000
...........................................................................................GTACCAA---CAACCTCAGCAAG-----C....................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGGCAGAGTGC---CGAT..................1911.00100000000010000000
..........................................................................................................................................ACAATACTGG---GCCTATAAC-----------.................................................................................................................................................................................................................................................................1911.00110000000000000000
....................................................GAGCATCTGGCAGACT------CA................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
......AACATCATCAGC---AGCA---GGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................CAACCTCAGCAAG-----CAGCGGCGGGCCAGC......................................................................................................................................................................................................................................................................................................2811.00100010000000000000
...............................................................................................CAA---CAACCTCAGCAAG-----CAGCGGCG.............................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..............................CGCCGCAGCATCAA---CAAACGAGCATC.................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................CAGCAGCAGTCACAACAGTAC.............................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................................................ATCTGGCAGACT------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
....................................AGCATCAA---CAAACGAGCATCTGGCAGAC.........................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.......................................ATCAA---CAAACGAGCATCTGGCAGACT------..................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
................................................AAACGAGCATCTGGCAGACT------CAGCA.............................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
........................................................................................................CCTCAGCAAG-----CAGCGGCGGGC..........................................................................................................................................................................................................................................................................................................2111.00101000000000000000
......................................................GCATCTGGCAGACT------CAGCA.............................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCCTGGCAGAG............................1511.00100000010000000000
........CATCATCAGC---AGCA---GGCG............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...........................................................TGGCAGACT------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
......AACATCATCAGC---AGCA---G...............................................................................................................................................................................................................................................................................................................................................................................................................1780.13100000000001000000
.......ACATCATCAGC---AGCA---................................................................................................................................................................................................................................................................................................................................................................................................................15170.06100000000001000000
droSec2
-----CAACATCATCAGC---AGCA---GGCGCCGCAGCATCAA---CAAACGAGCATCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGCCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAGGGTA-----------------AGTGA-CGC-A--GTGT-----TC--------------G-ACTGCTTAAG---------------------GCCAAAGACTAT-----------------------A-CGAGTT----GGTTGA------------TTCTCCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................AACCA---------------ACAGGCCTGGCAGA.............................1912.0020020
......................................................................................................AACCTCAGCAAG-----CAGCGG...............................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................CT------CAGCAGCAGTCACAACA.................................................................................................................................................................................................................................................................................................................................................1911.0010010
..............................................................................................CCAA---CAACCTCAGCAAG-----CAGC.................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................................................................................................................................................................................................................CA---------------ACAGGCCTGGCAGAGT...........................1811.0010010
............................................................................................................................................................................................................................................................................................................................................................................CAACCA---------------ACAGGCCTGGCAGAGTGC---CGATC.................2911.0010010
........................................................................................................CCTCAGCAAG-----CAGCGGCGGGCC.........................................................................................................................................................................................................................................................................................................2211.0010010
................................................AAACGAGCATCTGGCAGACT------CAGC..............................................................................................................................................................................................................................................................................................................................................................2411.0010010
...........CATCAGC---AGCA---GGCGCCGCAG......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGCAGAGTGC---CGATCCGC..............2211.0010010
droYak3
-----CAGCACCATCAGCAGCAGCA---GGCGCCGCAGCATCAA---CAAACGGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGTCAGCA---ACAATACTGG---GCCTATAAC-----------CAAATGCAGGGTA-----------------TGTAA-CGC-A--GAGT-----TC--------------G-ACTGCTCAGC---------------------G-CTATAACTAT-----------------------A-AGTGCTCGCTCT---TTGGT----------CTTCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCGTGGCAGAGTGC---CGATCCGCAG------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................AACCTCAGCAAG-----CAGCGGCGG............................................................................................................................................................................................................................................................................................................2112.00200000020000
...........................................................................................................................GGCGGGTCAGCA---ACAATACTGG---GCC..................................................................................................................................................................................................................................................................................2511.00100100000000
...............................................................................................CAA---CAACCTCAGCAAG-----CAGCGGCGG............................................................................................................................................................................................................................................................................................................2511.00100100000000
................................................................................................AA---CAACCTCAGCAAG-----CAGCGGC..............................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................................................A---CAACCTCAGCAAG-----CAGCGGCGGGG..........................................................................................................................................................................................................................................................................................................2511.00101000000000
.............................................................................................ACCAA---CAACCTCAGCAAG-----CAGCGGCGG............................................................................................................................................................................................................................................................................................................2711.00100000010000
..................................GCAGCATCAA---CAAACGGGCGTCTGG..............................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..........................................................................................................TCAGCAAG-----CAGCGGCGGGTCAGC......................................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................................................................................ACAATACTGG---GCCTATAAC-----------CA...............................................................................................................................................................................................................................................................2111.00100100000000
.......GCACCATCAGCAGCAGCA---GGC.............................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
......AGCACCATCAGCAGCAGCA---GGC.............................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
........CACCATCAGCAGCAGCA---GGC.............................................................................................................................................................................................................................................................................................................................................................................................................2030.33100000010000
..........CCATCAGCAGCAGCA---GGC.............................................................................................................................................................................................................................................................................................................................................................................................................1840.25101000000000
droEre2
-----CAACACCATCAGCAGCAGCA---GGCGCCGCAACATCAA---CAAACTGGCGTCTGGCAGACT------CAGCAGCAGTCACAACAGTACCAA---CAACCTCAGCAAG-----CAGCGGCGGGTCAGCA---ACAATATTGG---GCCTATAAC-----------CAAATGCAGGGTA-----------------TGTAG-CGC-A--GTTT-----CC--------------G-ACTGCCCAAG---------------------G-CTAAAACTAT-----------------------A-AGTGCTCGTTCG---ATGGT----------TTTCC-----AGCA---GGTTATGGCAACCA---------------ACAGGCCTGGCAGAGTGC---CGATCCGCAG------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................CT------CAGCAGCAGTCACAACAGT...............................................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................................................................................AACCTCAGCAAG-----CAGCGGCGG............................................................................................................................................................................................................................................................................................................2111.0011000000
.............................GCGCCGCAACATCAA---CAAACTGGC....................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......................................................................................................AACCTCAGCAAG-----CAGCGGCGGGTCAGC......................................................................................................................................................................................................................................................................................................2711.0010100000
........................................................................................................................AGCGGCGGGTCAGCA---ACAATATTGG---.....................................................................................................................................................................................................................................................................................2511.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGAGTGC---CGATCCGCAG------------2111.0010100000
......................................................................................................AACCTCAGCAAG-----CAGCGGCGGGGT.........................................................................................................................................................................................................................................................................................................2411.0010000100
............................................................................................................AGCAAG-----CAGCGGCGGGTCAGC......................................................................................................................................................................................................................................................................................................2111.0010001000
.......................................ATCAA---CAAACTGGCGTCTGGCA............................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...........................................A---CAAACTGGCGTCTGGCAGACT------C.................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.....................AGCA---GGCGCCGCAACATC..................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................CCA---------------ACAGGCCTGGCAGAGTGC---CGATC.................2611.0010100000
..........................................AA---CAAACTGGCGTCTGGCAGACT------C.................................................................................................................................................................................................................................................................................................................................................................2411.0010001000

Generated: 06/08/2015 at 04:26 PM