ID:

dpe_1612

 Coordinate:

scaffold_4:5174461-5174611 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.3 -9.1 -9.0

Flybase annnotation

CDS [Dper\GL16835-cds]; exon [dper_GLEANR_18671:1]; intron [Dper\GL16835-in]

No Repeatable elements found

Sense Strand Reads

----------------------------------------------####---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAAAACCACAATACAATCTGGTTTATTGGGCTTTAGGCCATTGTATGGGTAAGTAAATTGATCTAAATCATGGGCATGGGCATTCGAATCAGCAGCTATCAAGTGTCTCTACAATACACGAATATAAAATAGAATTCTCAGATCTCGTGAGGCTGCCAGAGAAGCTGCAGCCCAGACCTTCGCACATTTGTCCGACCATGATTCACCTGTAAATAAGCAACAATTTCGCGTGGTATAATAAACATGCCC
***********************************************************************(((((..((((.((((.................((((.........))))............)))).))))...)))))......*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V042
embryo
 M042
female body
 V111
male body		 V057
head
............ATACAATCTGGTTTATTGGGCT......................................................................................................................................................................................................................... 22 0 1 6.00 6 6 0 0 0 0
......................GTTTATTGGGCTTTAGGC................................................................................................................................................................................................................... 18 0 1 6.00 6 6 0 0 0 0
.....................GGTTTATTGGGCTTTAGGC................................................................................................................................................................................................................... 19 0 1 4.00 4 3 1 0 0 0
.......................TTTATTGGGCTTTAGGCC.................................................................................................................................................................................................................. 18 0 1 4.00 4 4 0 0 0 0
................AATCTGGTTTATTGGGCTTTAGGCC.................................................................................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0
...........AATACAATCTGGTTTATTGGGC.......................................................................................................................................................................................................................... 22 0 1 3.00 3 3 0 0 0 0
.................ATCTGGTTTATTGGGCTTTAGGC................................................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0
................AATCTGGTTTATTGGGCT......................................................................................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0
.......................................................................................................................................................................................GCACATTTGTCCGACCATG................................................. 19 0 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................................TTTGTCCGACCATGATTCACCT......................................... 22 0 1 2.00 2 2 0 0 0 0
.....................GGTTTATTGGGCTTTAGGCC.................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0
........................TTATTGGGCTTTAGGCCATTGTATG.......................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
..................................................................................................................................ATAGAATTCTCAGATCTCGTGAGGCT............................................................................................... 26 0 1 2.00 2 2 0 0 0 0
................AATCTGGTTTATTGGGCTTTAGGC................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0
.......................................................................ATGGGCATGGGCATTCGAATCAGCAGC......................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
.....................GGTTTATTGGGCCTTAGGCC.................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0
.........................................ATTGTATGGGTAAGTAAATTGA............................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0
............ATACAATCTGGCTTATTGGGCT......................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
................AATCTGGTTTATCGGGCTTTAGGC................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AAATAGAATTCTCAGATCTCGTGAGG................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................TAGAATTCTCAGATCTCGTGA................................................................................................... 21 0 1 1.00 1 0 0 0 1 0
.............................................................................ATGGGCATTCGAATCAGCA........................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
................AATCTGGTTTATTGGGCTTTAGGAC.................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................ATATAAAATAGAATTCTCAGATCTCGTGA................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
.................ATCTGGTTTATTAGGCTTTAGGC................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
........CACAATACAATCTGGTTTATTGGGC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.........................TATTGGGCTTTAGGCCATTGTATGGATC...................................................................................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0
......................GTTTATTGGGCTTTAGGCCATTGT............................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
..............................................................ATCTAAATCATGGGCATGGG......................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1
....................................................................ATCATGGGCATGGGCATTCGA.................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................................................ACATTTGTCCGACCATGATTCAC........................................... 23 0 1 1.00 1 1 0 0 0 0
.......................TTTATTGGGCTTTAGGAC.................................................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0
.................................................................................GCATTCGAATCAGCAGCTATCAAGT................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
.....................GGTTTATTGGGATTTAGGC................................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
...........AATACAATCTGGTTTATTGGGCT......................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.................ATCTGGTTTATTGGGCTTTAGGCCATT............................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..................................................GTAAGTAAATTGATCTAAATC.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
...............................................TGGATAAGTAAATTGAGCCAA....................................................................................................................................................................................... 21 3 7 0.71 5 0 0 4 1 0
........................................................................................................................................................................................................................AAGGATCAATTGCGCGTGGT............... 20 3 2 0.50 1 0 0 1 0 0
...............................................TGGATAAGTAAATTGAGCT......................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0
.......................TTTATTCGGCTTTAGGCC.................................................................................................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0
...............................................TGGATAAGTAAATTGAGCCA........................................................................................................................................................................................ 20 3 15 0.40 6 0 0 5 1 0
..........CAATACAGTCTGGTTTATTTC............................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 1
................................................GGATAAGTAAATTGAGCCAAA...................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 1 0
...............................................TGGATAAGTAAATTGAGC.......................................................................................................................................................................................... 18 2 10 0.10 1 0 0 1 0 0

Anti-sense strand reads

TCCTTTTGGTGTTATGTTAGACCAAATAACCCGAAATCCGGTAACATACCCATTCATTTAACTAGATTTAGTACCCGTACCCGTAAGCTTAGTCGTCGATAGTTCACAGAGATGTTATGTGCTTATATTTTATCTTAAGAGTCTAGAGCACTCCGACGGTCTCTTCGACGTCGGGTCTGGAAGCGTGTAAACAGGCTGGTACTAAGTGGACATTTATTCGTTGTTAAAGCGCACCATATTATTTGTACGGG
***********************************************************************************************(((((..((((.((((.................((((.........))))............)))).))))...)))))......*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
...............................................ACCTATTCATTTAACTCGGTT....................................................................................................................................................................................... 21 3 7 2.86 20 20 0 0
.....................................................................................................................................................................................AGCGTGTAAACAGGCTGGTAC................................................. 21 0 1 2.00 2 2 0 0
.........................................................................................................ACAGAGATGTTATGTGCTTAT............................................................................................................................. 21 0 1 1.00 1 0 1 0
........................................................................................................................................................................CGTCGGGTCTGGAAGCGTG................................................................ 19 0 1 1.00 1 0 1 0
..........................................................................................................................................................................TTGGGTCTGGGAGCGTGTAA............................................................. 20 2 1 1.00 1 0 0 1
...........................................................................................................................................AGTCTAGTGCACTCCGAAG............................................................................................. 19 2 2 0.50 1 1 0 0
...............................................ACCTATTCATTTAACTCGGT........................................................................................................................................................................................ 20 3 15 0.40 6 6 0 0
................................................CCTATTCATTTAACTCGGTT....................................................................................................................................................................................... 20 3 17 0.35 6 6 0 0
................................................................................................................................................................................................AGGCTGGTGCAAAGTGCACA....................................... 20 3 4 0.25 1 1 0 0
...............................................ACCTATTCATTTAACTCGGTTT...................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_4:5174411-5174661 - dpe_1612 AGG-----A------------------AAACCACAATACAATCTGGTTTATTGGGCTTTAGGCCATTGTATGGGTAAGTAAATTGATCTAAATCATGGGCATGGGCATTCGAATCAGCAGCTATCAAGTGTCTCTACAATACACGAATATAAAATAGAATTCTCAGATCTCGTGAGGCTGCCAGAGAAGCTGCAGCCCAGACCTTCGCACATTTGTCCGACCATGATTCACCTGTAAATAAGCAACAATTTCGCGTGGTATAATAAACATGC------------------------------CC
dp5 3:9856935-9857186 - AGG-----AA-----------------AAACCACAATACAATCTCGTTTATTGGGCTTTAGGCCATTGTATGGGTAAGTAAATTGATCTAAATCATGGGCATGGGCATTCGAATCAGCAGCTATCAAGTGTCTCTACAGTACACGAATATAAAATAGAATTCTCAGATCTCGTGAGGCTGCCAGAGAAGCTGCAGCCCAGACCTTCGCACATTTGTCCGACCATGATTCACCTGTAAATAAGCAACAATTTCGCGTGGTATAATAAACATGC------------------------------CC
droWil2 scf2_1100000004822:1349978-1350041 - GAA-----G------------------AAACAACAAT----TTTTGTTTATCGGGCT-TAGGCCATTGTATGGGTAAGTAAATAAATTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:11063840-11063906 + CAA-----AACA-CTACACTACAACAAGAACCGC-----AACATTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:15867024-15867089 - AGC-----AACA-ACACTA-CACAACAAAACAAC-----AAGTTTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15187:611-684 - AGCTAAAAAAAAACACCAC-ACCACAGAAGC--------AACATTATTAATTGGGCT-TAGGCCATTGTATGGGTAAGTTGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:3082810-3082862 + GGA-----A------------------AAACAACAAT----TTTTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396427:1547677-1547729 + GGA-----A------------------AAACAACAAT----TTTTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302471:650112-650254 - AAA-----T------------------AAACTTCATA--GATCGTTTTCACAAAGCA-AAACACATTGTA----------------------------------------------------------------------------------------------------------------------------GTCCAGACCAGCAGACTCT-GGCTTCCGGTGAATCACGTGCAA-TTAGCAACAATTGCGCGTGCCTCAGCGAATATTTTCCATGTGCCACAT---------TGAGAGGCC
droFic1 scf7180000454039:1490543-1490610 - AAC-----CCGA-GAACTTCACCAGGAAAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491201:437676-437760 - ACC-------GA-GATCTTAATCAGGAAAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA--TGAAATCAATCAGGGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777843:54842-54978 + AAA-----ATAA-----------------ACTTCATA--GACTTCATGGACTACACT-T-------TGT------------------------------------------AGTCGACCACTCT------------------------------------------------------------------------------------------CACATCCGGTGATTCACGTGTAA-TTAGCGGCAATTGCGCGTGCCT--GCGAATATTTCGAATGTGGCACATATGCACATATGTGGAGCC
droBia1 scf7180000302291:3114543-3114593 + AGG-----A------------------AAACAAC-----AGTTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415159:243331-243393 + AGG-----A------------------AAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA--TGAGATAAATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409474:1775615-1775671 + AGG-----A------------------AAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAAATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:16200517-16200567 - GG------------------------AAAACAAC-----GATTTTGTTAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:16780408-16780475 - AAG-----CCGA-GATCTT-ACCTGGAAAACAAC-----GATTTCGTTAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_3129:397-464 - AAG-----CCGA-GATCTT-ACCTGGAAAACAAC-----GATTTCGTTAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:13002441-13002512 + ACCAAA-ACCAA-GATCTT-AACAGGAACACAAG-----GATTTCGTCAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:10351658-10351727 - ACTAAA-CCCGA-GATCTT-ACCAGGAAAACG-------GATTTCGTCACTAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGG-----A------------------AAACCACAATACAATCTGGTTTATTGGGCTTTAGGCCATTGTATGGGTAAGTAAATTGATCTAAATCATGGGCATGGGCATTCGAATCAGCAGCTATCAAGTGTCTCTACAATACACGAATATAAAATAGAATTCTCAGATCTCGTGAGGCTGCCAGAGAAGCTGCAGCCCAGACCTTCGCACATTTGTCCGACCATGATTCACCTGTAAATAAGCAACAATTTCGCGTGGTATAATAAACATGC------------------------------CCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................ATACAATCTGGTTTATTGGGCT.......................................................................................................................................................................................................................................................2216.006600000
.............................................GTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................1816.006600000
............................................GGTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................1914.004301000
..............................................TTTATTGGGCTTTAGGCC................................................................................................................................................................................................................................................1814.004400000
.......................................AATCTGGTTTATTGGGCTTTAGGCC................................................................................................................................................................................................................................................2513.003300000
..................................AATACAATCTGGTTTATTGGGC........................................................................................................................................................................................................................................................2213.003300000
........................................ATCTGGTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................2313.003300000
.......................................AATCTGGTTTATTGGGCT.......................................................................................................................................................................................................................................................1813.003300000
..............................................................................................................................................................................................................GCACATTTGTCCGACCATG...............................................................................1912.002200000
...................................................................................................................................................................................................................TTTGTCCGACCATGATTCACCT.......................................................................2212.002200000
............................................GGTTTATTGGGCTTTAGGCC................................................................................................................................................................................................................................................2012.002200000
...............................................TTATTGGGCTTTAGGCCATTGTATG........................................................................................................................................................................................................................................2512.002200000
.........................................................................................................................................................ATAGAATTCTCAGATCTCGTGAGGCT.............................................................................................................................2612.002200000
.......................................AATCTGGTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................2412.002200000
..............................................................................................ATGGGCATGGGCATTCGAATCAGCAGC.......................................................................................................................................................................................2712.002200000
................................................................ATTGTATGGGTAAGTAAATTGA..........................................................................................................................................................................................................................2211.001000001
.......................................................................................................................................................AAATAGAATTCTCAGATCTCGTGAGG...............................................................................................................................2611.001100000
..........................................................................................................................................................TAGAATTCTCAGATCTCGTGA.................................................................................................................................2111.001000001
....................................................................................................ATGGGCATTCGAATCAGCA.........................................................................................................................................................................................1911.001001000
..................................................................................................................................................ATATAAAATAGAATTCTCAGATCTCGTGA.................................................................................................................................2911.001100000
...............................CACAATACAATCTGGTTTATTGGGC........................................................................................................................................................................................................................................................2511.001100000
.............................................GTTTATTGGGCTTTAGGCCATTGT...........................................................................................................................................................................................................................................2411.001001000
.....................................................................................ATCTAAATCATGGGCATGGG.......................................................................................................................................................................................................2011.001000010
...........................................................................................ATCATGGGCATGGGCATTCGA................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................................ACATTTGTCCGACCATGATTCAC.........................................................................2311.001100000
........................................................................................................GCATTCGAATCAGCAGCTATCAAGT...............................................................................................................................................................................2511.001001000
..................................AATACAATCTGGTTTATTGGGCT.......................................................................................................................................................................................................................................................2311.001100000
........................................ATCTGGTTTATTGGGCTTTAGGCCATT.............................................................................................................................................................................................................................................2711.001100000
.........................................................................GTAAGTAAATTGATCTAAATC..................................................................................................................................................................................................................2111.001010000
dp5
AGG-----AA-----------------AAACCACAATACAATCTCGTTTATTGGGCTTTAGGCCATTGTATGGGTAAGTAAATTGATCTAAATCATGGGCATGGGCATTCGAATCAGCAGCTATCAAGTGTCTCTACAGTACACGAATATAAAATAGAATTCTCAGATCTCGTGAGGCTGCCAGAGAAGCTGCAGCCCAGACCTTCGCACATTTGTCCGACCATGATTCACCTGTAAATAAGCAACAATTTCGCGTGGTATAATAAACATGC------------------------------CCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................AATCTCGTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................2413.0030120000000
...................................ATACAATCTCGTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................2811.0010010000000
.............................................GTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................1811.0010010000000
......................................CAATCTCGTTTATTGGGC........................................................................................................................................................................................................................................................1811.0010010000000
..........................................CTCGTTTATTGGGCTTTAGGCC................................................................................................................................................................................................................................................2211.0010010000000
....................................................................................................................................................................................................................................CACCTGTAAATAAGCAACAATTTCGCGC................................................2811.0010010000000
............................................CGTTTATTGGGCTTTAGG..................................................................................................................................................................................................................................................1811.0010000100000
.........A-----------------AAACCACAATACAATCTCGTTTATTGGG.........................................................................................................................................................................................................................................................2911.0010010000000
.....................................ACAATCTCGTTTATTGGGC........................................................................................................................................................................................................................................................1911.0010010000000
..................................AATACAATCTCGTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................2911.0010010000000
..............................................................................................ATGGGCATGGGCATTCGAATCAGCA.........................................................................................................................................................................................2511.0010010000000
............................................CGTTTATTGGGCTTTAGGC.................................................................................................................................................................................................................................................1911.0010010000000
...............................................TTATTGGGCTTTAGGCCATTGTATGG.......................................................................................................................................................................................................................................2611.0010000100000
............................................CGTTTATTGGGCTTTAGGCC................................................................................................................................................................................................................................................2011.0010010000000
......................................................................................................................................................................................................AGACCTTCGCACATTTGTCCGACCATG...............................................................................2711.0010010000000
.......................................AATCTCGTTTATTGGGCTTTAGGCC................................................................................................................................................................................................................................................2511.0010010000000
........................................ATCTCGTTTATTGGGCTTTAGGCC................................................................................................................................................................................................................................................2411.0010010000000
droWil2
GAA-----G------------------AAACAACAAT----TTTTGTTTATCGGGCT-TAGGCCATTGTATGGGTAAGTAAATAAATTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................AAT----TTTTGTTTATCGGGCT-TAGGCC................................................................................................................................................................................................................................................2516.00650010
.............................................GTTTATCGGGCT-TAGGCC................................................................................................................................................................................................................................................1815.00550000
...................................AT----TTTTGTTTATCGGGCT-TAGGCC................................................................................................................................................................................................................................................2413.00320010
....................................T----TTTTGTTTATCGGGCT-TAGGCC................................................................................................................................................................................................................................................2312.00220000
..........................................TTTGTTTATCGGGCT-TAGGCC................................................................................................................................................................................................................................................2112.00200020
.........................................TTTTGTTTATCGGGCT-TAGGCC................................................................................................................................................................................................................................................2211.00110000
........G------------------AAACAACAAT----TTTTGTTTATCGGGCT-......................................................................................................................................................................................................................................................2711.00110000
.............................................GTTTATCGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2711.00100010
..........................................TTTGTTTATCGGGCT-TAGGCCATTGTATG........................................................................................................................................................................................................................................2911.00100100
GAA-----G------------------AAACAACAAT----TTTTGT.................................................................................................................................................................................................................................................................2011.00100100
...............................AACAAT----TTTTGTTTATCGGGCT-TAGGCC................................................................................................................................................................................................................................................2811.00110000
....................................T----TTTTGTTTATCGGGCT-TAGGC.................................................................................................................................................................................................................................................2211.00100010
...........................................TTGTTTATCGGGCT-TAGG..................................................................................................................................................................................................................................................1811.00100010
...........................AAACAACAAT----TTTTGTTTATCGGGCT-T.....................................................................................................................................................................................................................................................2711.00110000
..........................................TTTGTTTATCGGGCT-TAGGC.................................................................................................................................................................................................................................................2011.00100100
................................................TATCGGGCT-TAGGCCATTGTATGGGTAA...................................................................................................................................................................................................................................2811.00100100
...............................................TTATCGGGCT-TAGGCCATTGTATGGA......................................................................................................................................................................................................................................2611.00100010
................................................TATCGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2411.00100010
droVir3
CAA-----AACA-CTACACTACAACAAGAACCGC-----AACATTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................ATTGTTTATTGGGCT-TAGGC.................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000010000
....................ACAACAAGAACCGC-----AACATTGTT................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
........................................ACATTGTTTATTGGGCT-TAGGC.................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000001000000000000000000000000000
..........................................ATTGTTTATTGGGCT-TAGGCC................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000010000
............................................TGTTTATTGGGCT-TAGGCC................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
.........ACA-CTACACTACAACAAGAACCGC-----AACAT....................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.........................................CATTGTTTATTGGGCT-TAGGCCATTG............................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
.............................................GTTTATTGGGCT-TAGGCCATTGTAT.........................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
AGC-----AACA-ACACTA-CACAACAAAACAAC-----AAGTTTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGCTAAAAAAAAACACCAC-ACCACAGAAGC--------AACATTATTAATTGGGCT-TAGGCCATTGTATGGGTAAGTTGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GGA-----A------------------AAACAACAAT----TTTTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................TTTGTTTATTGGGCT-TAGGC.................................................................................................................................................................................................................................................2013.003110010
.........................................TTTTGTTTATTGGGCT-TAGGC.................................................................................................................................................................................................................................................2111.001010000
..................................AAT----TTTTGTTTATTGGGCT-......................................................................................................................................................................................................................................................1911.001000001
droBip1
GGA-----A------------------AAACAACAAT----TTTTGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAA-----T------------------AAACTTCATA--GATCGTTTTCACAAAGCA-AAACACATTGTA----------------------------------------------------------------------------------------------------------------------------GTCCAGACCAGCAGACTCT-GGCTTCCGGTGAATCACGTGCAA-TTAGCAACAATTGCGCGTGCCTCAGCGAATATTTTCCATGTGCCACAT---------TGAGAGGCCSizeHit CountTotal NormTotal
No Reads
droFic1
AAC-----CCGA-GAACTTCACCAGGAAAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACC-------GA-GATCTTAATCAGGAAAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA--TGAAATCAATCAGGGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAA-----ATAA-----------------ACTTCATA--GACTTCATGGACTACACT-T-------TGT------------------------------------------AGTCGACCACTCT------------------------------------------------------------------------------------------CACATCCGGTGATTCACGTGTAA-TTAGCGGCAATTGCGCGTGCCT--GCGAATATTTCGAATGTGGCACATATGCACATATGTGGAGCCSizeHit CountTotal NormTotal
No Reads
droBia1
AGG-----A------------------AAACAAC-----AGTTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGG-----A------------------AAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAA--TGAGATAAATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGG-----A------------------AAACAAC-----AATTTCGTTTATTGGGCT-TAGGCCATTGTATGGGTAAGTAAATTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GG------------------------AAAACAAC-----GATTTTGTTAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................TTGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000
..........................................TTTGTTAATAGGGCT-TAGGCATC..............................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AC-----GATTTTGTTAATAGGGCT-TAGG..................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................TGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................GATTTTGTTAATAGGGCT-TAGGCCATT.............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAAC-----GATTTTGTTAATAGGG.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................C-----GATTTTGTTAATAGGGCT-......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................TGTTAATAGGGCT-TAGGCCATTG............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................C-----GATTTTGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AACAAC-----GATTTTGTTAATAGGGCT-......................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TAATAGGGCT-TAGGCCATTGTATGGGT.....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................TTTTGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................GATTTTGTTAATAGGGCT-TA....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................GATTTTGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AATAGGGCT-TAGGCCATTGTATGGGT.....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................AATAGGGCT-TAGGCCATTGT...........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................TTTGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................ATAGGGCT-TAGGCCATTGTATGGA......................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AATAGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAAC-----GATTTTGTTAATAGGGCT-......................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
AAG-----CCGA-GATCTT-ACCTGGAAAACAAC-----GATTTCGTTAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................AC-----GATTTCGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2617.00710600000000000000
.......................................GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................1816.00600600000000000000
................................AC-----GATTTCGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2514.00400300000000100000
...............................AAC-----GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................2114.00400400000000000000
.............................................GTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................1813.00300300000000000000
.........................................TTTCGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2213.00300300000000000000
..........................................TTCGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2012.00210000000000100000
.......................................GATTTCGTTAATAGGGCT-T.....................................................................................................................................................................................................................................................1912.00201100000000000000
...........................................TCGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2012.00200200000000000000
................................AC-----GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................2012.00200200000000000000
.................................C-----GATTTCGTTAATAGGGCT-TAGGCCATTG............................................................................................................................................................................................................................................2912.00200200000000000000
.............................ACAAC-----GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................2312.00200200000000000000
...........................AAACAAC-----GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................2512.00200200000000000000
...............TCTT-ACCTGGAAAACAAC-----GAT......................................................................................................................................................................................................................................................................2112.00200200000000000000
................................................AATAGGGCT-TAGGCCATTGTATGGA......................................................................................................................................................................................................................................2511.00100000010000000000
............................AACAAC-----GATTTCGTTAATAGGGCC-......................................................................................................................................................................................................................................................2411.00100100000000000000
............................................CGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................1911.00100100000000000000
...........................................TCGTTAATAGGGCT-TAGGCCAT..............................................................................................................................................................................................................................................2211.00100000010000000000
............................AACAAC-----GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................2411.00100100000000000000
.................................C-----GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................1911.00101000000000000000
.......................................GATTTCGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2411.00100100000000000000
.................................................ATAGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2311.00100000000000100000
................................AC-----GATTTCGTTAATAGGGCT-T.....................................................................................................................................................................................................................................................2111.00100010000000000000
..............................CAAC-----GATTTCGTTAATAGGGCT-......................................................................................................................................................................................................................................................2211.00100000000000100000
...........................AAACAAC-----GATTTCGTTAATAGGGCC-......................................................................................................................................................................................................................................................2511.00100100000000000000
...............................................TAATAGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2511.00100000000000100000
...........................AAACAAC-----GATTTCGTTAATAGGGC........................................................................................................................................................................................................................................................2411.00100000000000100000
.......................................GATTTCGTTAATAGGGCT-TAG...................................................................................................................................................................................................................................................2111.00100100000000000000
.............................ACAAC-----GATTTCGTTAATAGGGCT-T.....................................................................................................................................................................................................................................................2411.00100100000000000000
............................AACAAC-----GATTTCGTTAATAGGGC........................................................................................................................................................................................................................................................2311.00100100000000000000
.........................................TTTCGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2111.00100100000000000000
............................AACAAC-----GATTTCGTTAATAGGGCT-TA....................................................................................................................................................................................................................................................2611.00100100000000000000
.............GATCTT-ACCTGGAAAACAAC-----GATTTCGT.................................................................................................................................................................................................................................................................2811.00100010000000000000
.......................................GATTTCGTTAATAGGGCC-......................................................................................................................................................................................................................................................1811.00100100000000000000
........................................ATTTCGTTAATAGGGCT-T.....................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
AAG-----CCGA-GATCTT-ACCTGGAAAACAAC-----GATTTCGTTAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................AC-----GATTTCGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2621.5030030
.......................................GATTTCGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2321.0020020
...............................AAC-----GATTTCGTTAATAGGGC........................................................................................................................................................................................................................................................2020.5010010
..G-----CCGA-GATCTT-ACCTGGA.....................................................................................................................................................................................................................................................................................1820.5010010
..............................CAAC-----GATTTCGTTAATAGGGC........................................................................................................................................................................................................................................................2120.5010010
.......................................GATTTCGTTAATAGGGCT-TAGGCCATTGT...........................................................................................................................................................................................................................................2920.5010010
.........................................TTTCGTTAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2120.5010010
...........................................TCGTTAATAGGGCT-TAGGCCATTGTATG........................................................................................................................................................................................................................................2820.5010010
.................TT-ACCTGGAAAACAAC-----GATTT....................................................................................................................................................................................................................................................................2120.5010100
..................T-ACCTGGAAAACAAC-----GATTTCGTT................................................................................................................................................................................................................................................................2420.5010010
...........................................TCGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2020.5010010
...............................AAC-----GATTTCGTTAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2720.5010010
....................ACCTGGAAAACAAC-----GATTTC...................................................................................................................................................................................................................................................................2020.5010010
......................CTGGAAAACAAC-----GATTTCGT.................................................................................................................................................................................................................................................................2020.5010010
.AG-----CCGA-GATCTT-ACCTGGAA....................................................................................................................................................................................................................................................................................2020.5010010
................................................AATAGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2420.5010010
........................................................T-TAGGCCATTGTATGGGT.....................................................................................................................................................................................................................................1820.5010010
...............................AAC-----GATTTCGTTAATAGGG.........................................................................................................................................................................................................................................................1920.5010010
droYak3
ACCAAA-ACCAA-GATCTT-AACAGGAACACAAG-----GATTTCGTCAATAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................ATAGGGCT-TAGGCCATTGTATGGA......................................................................................................................................................................................................................................2412.00201000010000
........................................ATTTCGTCAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2212.00200100010000
...........................................TCGTCAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2012.00200200000000
................CTT-AACAGGAACACAAG-----GA.......................................................................................................................................................................................................................................................................1911.00100000010000
.........................................TTTCGTCAATAGGGCT-TAGGCCATT.............................................................................................................................................................................................................................................2511.00100100000000
................................................AATAGGGCT-TAGGCCATTGTATGGA......................................................................................................................................................................................................................................2511.00100000010000
..............................CAAG-----GATTTCGTCAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2811.00100000010000
............................CACAAG-----GATTTCGTCAATAGGGC........................................................................................................................................................................................................................................................2311.00100000010000
............................................CGTCAATAGGGCT-TAGGCCATT.............................................................................................................................................................................................................................................2211.00101000000000
ACCAAA-ACCAA-GATCTT-AACAGGA.....................................................................................................................................................................................................................................................................................2411.00101000000000
..........................................TTCGTCAATAGGGCT-TAGGCCATTGTATG........................................................................................................................................................................................................................................2911.00100000010000
.........................GAACACAAG-----GATTTCGTCAATAGGGCT-......................................................................................................................................................................................................................................................2711.00100100000000
.......................................GATTTCGTCAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2411.00101000000000
................................AG-----GATTTCGTCAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2511.00110000000000
..................................................TAGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2211.00100100000000
........................GGAACACAAG-----GATTTCGTCA...............................................................................................................................................................................................................................................................2011.00100000010000
.......................................GATTTCGTCAATAGGGCT-TAGGC.................................................................................................................................................................................................................................................2311.00100000010000
...........................ACACAAG-----GATTTCGTCAAT.............................................................................................................................................................................................................................................................1911.00101000000000
.......................AGGAACACAAG-----GATTTCGTC................................................................................................................................................................................................................................................................2011.00100100000000
..................T-AACAGGAACACAAG-----GATTT....................................................................................................................................................................................................................................................................2011.00100010000000
.................................G-----GATTTCGTCAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2511.00100100000000
..........................................TTCGTCAATAGGGCT-TAGGCC................................................................................................................................................................................................................................................2111.00100100000000
.................................G-----GATTTCGTCAATAGGGC........................................................................................................................................................................................................................................................1811.00100100000000
..........................AACACAAG-----GATTTCGTCAAT.............................................................................................................................................................................................................................................................2011.00101000000000
.................................................ATAGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2311.00100000010000
....AA-ACCAA-GATCTT-AACAGGAACACAA...............................................................................................................................................................................................................................................................................2611.00101000000000
....................AACAGGAACACAAG-----GATTT....................................................................................................................................................................................................................................................................1911.00101000000000
droEre2
ACTAAA-CCCGA-GATCTT-ACCAGGAAAACG-------GATTTCGTCACTAGGGCT-TAGGCCATTGTATGGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................G-------GATTTCGTCACTAGGGC........................................................................................................................................................................................................................................................1811.0011000000
..........................................TTCGTCACTAGGGCT-TAGGCCA...............................................................................................................................................................................................................................................2211.0011000000
.............GATCTT-ACCAGGAAAACG-------GAT......................................................................................................................................................................................................................................................................2111.0010000100
.........................................TTTCGTCACTAGGGCT-TAGGCC................................................................................................................................................................................................................................................2211.0011000000
................CTT-ACCAGGAAAACG-------GATTTCGTCAC..............................................................................................................................................................................................................................................................2611.0010001000
........................................ATTTCGTCACTAGGGCT-T.....................................................................................................................................................................................................................................................1811.0010001000
.......................................GATTTCGTCACTAGGGCT-TAGGCC................................................................................................................................................................................................................................................2411.0010100000
................CTT-ACCAGGAAAACG-------GATTTCGTC................................................................................................................................................................................................................................................................2411.0011000000
............................AACG-------GATTTCGTCACTAGGGC........................................................................................................................................................................................................................................................2111.0010000100
......................CAGGAAAACG-------GATTTCGTCACTAGGGC........................................................................................................................................................................................................................................................2711.0010100000
.............GATCTT-ACCAGGAAAACG-------GATTTC...................................................................................................................................................................................................................................................................2411.0010100000
........................................ATTTCGTCACTAGGGCT-TAGGCC................................................................................................................................................................................................................................................2311.0011000000
.........CGA-GATCTT-ACCAGGAAAACG-------GATTT....................................................................................................................................................................................................................................................................2611.0010100000
.............GATCTT-ACCAGGAAAACG-------GATT.....................................................................................................................................................................................................................................................................2211.0010000010
.............GATCTT-ACCAGGAAAACG-------GATTTCGT.................................................................................................................................................................................................................................................................2611.0010000100
..........................................TTCGTCACTAGGGCT-TAGGCCATTGTA..........................................................................................................................................................................................................................................2711.0011000000
........................GGAAAACG-------GATTTCGTCACTAGGGCT-T.....................................................................................................................................................................................................................................................2711.0010000100
.......................AGGAAAACG-------GATTTCGTCACTA............................................................................................................................................................................................................................................................2211.0010000100
.............................................GTCACTAGGGCT-TAGGCCATTGTATGG.......................................................................................................................................................................................................................................2711.0010000010
...........................AAACG-------GATTTCGTCACTAGGGCT-TA....................................................................................................................................................................................................................................................2511.0010001000
.....................CCAGGAAAACG-------GATTTCGTCAC..............................................................................................................................................................................................................................................................2211.0010001000

Generated: 06/08/2015 at 04:25 PM