ID:

dpe_160

 Coordinate:

scaffold_0:11526575-11526635 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

antisense_to_3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.4 -32.8 -32.8

Flybase annnotation

Antisense to utr3 [utr3_plus_6122]; Antisense to pre_miRNA [Dper\mir-iab-4-RM]; utr3 [utr3_minus_7917]; Antisense to miRNA [Dper\miR-iab-4-3p-RB]; Antisense to miRNA [Dper\miR-iab-4-5p-RA]

No Repeatable elements found

Sense Strand Reads

CACGTTTAAATTCAGTTCGACATATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTCATCCTACATAACCGCTGAAAGAAAATTACGAATG

***********************************..((((....((((((.((((((((((((.((((.((....((......))..)))))).))))))))))))))))))....))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V111

male body		 M042

female body

 V042

embryo

 V050

head

 M021

embryo

 V057

head
..................................................TTACGTATACTGAAGGTAT............................................................................................ 19 0 1 543.00 543 505 25 5 6 0 2
..................................................TTACGTATACTGAAGGTATA........................................................................................... 20 0 1 64.00 64 28 15 19 1 0 1
..................................................TTACGTATACTGAAGGTATAC.......................................................................................... 21 0 1 46.00 46 4 39 3 0 0 0
..................................................TTACGTATACTGAAGGTATACC......................................................................................... 22 0 1 24.00 24 1 19 2 0 2 0
..................................................TTACGTATACTGAAGGTATACCGG....................................................................................... 24 0 1 11.00 11 2 8 1 0 0 0
..................................................TTACGTATACTGAAGGTATT........................................................................................... 20 1 1 10.00 10 9 1 0 0 0 0
..................................................TTACGTATACTGAAGGTTTT........................................................................................... 20 2 1 5.00 5 5 0 0 0 0 0
..................................................TTACGTATACTGAAGGGAT............................................................................................ 19 1 1 4.00 4 3 0 0 1 0 0
..................................................TTACGTATACTGAAGGTTTA........................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TTACGTATACTGAAGGAAT............................................................................................ 19 1 1 3.00 3 3 0 0 0 0 0
...................................................TACGTATACTGAAGGTATACCGG....................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0
..................................................TTACGTATACTGAAGGTATACCGT....................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...................................................TACGTATACTGAAGGTATACC......................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0
..................................................TTACGTATACTGAAGGTTA............................................................................................ 19 2 1 2.00 2 2 0 0 0 0 0
..................................................TTACGTATACTGAAGGTATACT......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................TACGTATACTGAAGGTATACCG........................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
...................................................TACGTATACTGAAGGTATAC.......................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTATACTGAAGGCAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTATACTGAAGGTATAA.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTATGCTGAAGGTATAC.......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTATAGTGAAGGTAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGAATACTGAAGGTAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
.....................................................CGTATACTGAAGGTATACCGG....................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................TTAGGTATACTGAAGGTAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
.................................................TTTACGTAGACTGAAGGTAT............................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0
.................CTACACATCCAGCGTTGCTGGT.......................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1
..................................................TTACGTATACTGGAGGTATA........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GTACGTATACTGAAGGTAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTACACTGAAGGTAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTATACTGACGGTAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTATACTGAAGGTATACCGGT...................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
........................................................................................GGATACATTCAGTATACGTATA................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................AGGATACATTCAGTATACGT...................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTATACTGAAGGTTT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
...................................................TACGTATACTGAAGGTATA........................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................TTATGTATACTGAAGGTATACCGG....................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
...................................................TACGTATACTGAAGGTATACCGGA...................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTATACTGAAGGTAA............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
.......................ATCCCGCGTTGCTGGAGTTTCCTCGTG............................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0
..................................................TTACGTATACTGAAGGTTTTT.......................................................................................... 21 3 3 1.00 3 3 0 0 0 0 0
..................................................TTACGCATACTGAAGGTAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTATACTGAAGGGATACC......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.......................ATCCCGCGTTGCTGGTGTTTCCTCGTG............................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0
.................................................GTTACGTAGACTGAAGGTAT............................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTATACTGAAGGTATAT.......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..................................................TTACGTATACTGAAAGTATA........................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...................................................TACGTATACTGAAGGTAT............................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTATACTGAAGGGATA........................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...................................................TACGTATACTGAAGGGAT............................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTATGCTGAAGGTATACC......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTATACTGAAGGTATACCG........................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTATACCGTAGGTAT............................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0
..................................................ATACGTATACTGAAGGTAT............................................................................................ 19 1 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................ATAACCGCTGAAAGCATCT........ 19 3 20 0.10 2 0 2 0 0 0 0

Anti-sense strand reads

GTGCAAATTTAAGTCAAGCTGTATAGGGCGCAACGACCACAAAGGAGCACAATGCATATGACTTCCATATGGCCTATCCTATGTGAGTCCTATGTAAGTCATATGCATATGCTTCAGCGTGTCCAAGTAGGATGTATTGGCGACTTTCTTTTAATGCTTAC

************************************..((((....((((((.((((((((((((.((((.((....((......))..)))))).))))))))))))))))))....))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 M021

embryo

 V042

embryo

 V050

head

 V057

head

 V111

male body
.....................................................................................AGTCCTATGTAAGTCATATGCA...................................................... 22 0 1 266.00 266 128 91 46 0 1 0
......................................................................................GTCCTATGTAAGTCATATGCA...................................................... 21 0 1 115.00 115 91 18 5 1 0 0
.....................................................................................AGTCCTATGTAAGTCATATGC....................................................... 21 0 1 10.00 10 8 2 0 0 0 0
.....................................................................................GGTCCTATGTAAGTCATATGCA...................................................... 22 1 1 9.00 9 1 8 0 0 0 0
......................................................................................GTCCTATGTAAGTCATATGC....................................................... 20 0 1 8.00 8 8 0 0 0 0 0
........................................................................................CCTATGTAAGTCATATGCA...................................................... 19 0 1 6.00 6 0 5 1 0 0 0
....................................................................................TAGTCCTATGTAAGTCATATGC....................................................... 22 1 1 5.00 5 0 5 0 0 0 0
.......................................................................................TCCTATGTAAGTCATATGCA...................................................... 20 0 1 5.00 5 3 0 2 0 0 0
.....................................................................................AGTCCTATTTAAGTCATATGCA...................................................... 22 1 1 4.00 4 1 3 0 0 0 0
......................................................................................GTCCTATGTAAGACATATGCA...................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.....................................................................................AGTCCTATGTAAGGCATATGCA...................................................... 22 1 1 4.00 4 4 0 0 0 0 0
.....................................................................................TGTCCTATGTAAGTCATATGCA...................................................... 22 1 1 3.00 3 1 2 0 0 0 0
......................................................................................GTCCTATGTAAGCCATATGCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................CTATGTAAGTCATATGCA...................................................... 18 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................AGTCCTATCTAAGTCATATGCA...................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................AGCCCTATGTAAGTCATATGCA...................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................AGTCCTATGTAAGACATATGCA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.................................................CAATGCATATGACTTCCATAT........................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
....................................................................................AAGTCCTATGTAAGTCATATGCA...................................................... 23 1 1 2.00 2 0 1 1 0 0 0
.....................................................................................GGTCCTATGTAAGTCATATGC....................................................... 21 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................AGTCCTATGTAAGCCATATGCA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
......................................................................................GTCCTATGTAAGGCATATGCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................AGTCCTAGTTAACTCATATGCA...................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................ATTCCTATGTAAGTCATAAGCA...................................................... 22 2 1 1.00 1 0 0 1 0 0 0
....................................................................................TAGTCCTATGTAAGTCATATG........................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................AGTCCTATGTAAATCATATGC....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................GCATATGACTTCCATATGGC........................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................AGTCCTATGAAAGTCATATGCA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................ACTCCTATGTAAGTCATATGCA...................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................AGTCCTATGTAAGTCATA.......................................................... 18 0 1 1.00 1 1 0 0 0 0 0
................................................ACAATGCATATGACTTCCATAT........................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
......................................................................................GTCCTATGTAAGTCATATGCAT..................................................... 22 0 1 1.00 1 0 1 0 0 0 0
......................................................................................GTCCTATCTAAGTCATATGCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
......................................................................................TTCCTATGTAAGTCATATG........................................................ 19 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................AGTCCTATGGAAGTCATATGCA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................................................GAGTCCTATGTAAGTCATATGC....................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................TCCTATGTAAGACATATGCA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................AGTCCTATGTCAGTCATATGCA...................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................ACTCCTATGTAAGTAATATGCA...................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................AGTCCTATGTAAGTCGTATGCA...................................................... 22 1 1 1.00 1 0 0 1 0 0 0
................................................TCAATGCATATGACTTCCATAT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................GTCCTATGTAAGTCATATGCAC..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................AGTCCTATGTAAGTCACATGCA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................AGTCCTATGTAAGTCATATG........................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.................................................CAATGCATATGACTTCCATA............................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
........................................................................................CCTATGTCAGTCATATGCA...................................................... 19 1 1 1.00 1 0 0 1 0 0 0
......................................................................................GTCCTAAGTAAGTCATATGCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................GGTCCTATTTAAGTCATATGCA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................................................GAGTCCTATGTAAGTCATATGCA...................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................TGTCCTATGTACGTCATATGCA...................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................TCCTATGTATGTCATATGCA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
....................................................................................CAGTCCTATGTAAGTCATATGC....................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................AGTCCTATGTAAGTCATATACA...................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................AGTCCTATTTAATTCATATGCA...................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TATGGAAGTCATATGCATA.................................................... 19 1 3 0.33 1 0 0 0 0 0 1
......................................................................................GTCCTTTTTAACTCATATGCA...................................................... 21 3 5 0.20 1 0 0 1 0 0 0
..........................................................................................................................CCAAGTAGGGCGTATCGG..................... 18 3 20 0.20 4 2 0 0 0 0 2
..........................................................................................TATGTAAGTCATTGGCATG.................................................... 19 3 16 0.06 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_0:11526525-11526685 - dpe_160 candidate-rescued CAC----GT----TTAA------A---------------TTCAGTTCGACATATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTCATCCT--A------CATAACCGC-TGAA-AG----------------------AAAATTACGA-------------------------------ATG
dp5 2:17671719-17671867 - dps-mir-iab-8 Known_mirbase CA-----------------------------------------GTTCGACGTATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTCATCCT--A------CATAACCGC-TGAA-AG----------------------AAAATTACGA-------------------------------GTG
droWil2 scf2_1100000004943:4905569-4905720 + dwi_203 confident -------------------------------------------GTTTCACACATCCCGCGTTGTTGGTGTTTCATCGTGTTACGTATACTGAAGGTATACCGGATAGCATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGATTCATCT---------------------GGA-AA-G-----------------TG---ACCGGT-ACCCGGTGACCGTTTCG--------------TATG
droVir3 scaffold_12855:414680-414798 + dvi-mir-iab-8 Known_mirbase A------------------------------------------------CACATCCCGCGTCGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCTACAA--T---------AAG---------------------------------------------------------------------------TG
droMoj3 scaffold_6540:1943693-1943841 - dmo_140 confident T--------------------------------------------TTCACACATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCAACA----ATT---CG-----------------------CTCCTGAAAAGTGTAAAATCTCGA------------A------------------TCG
droGri2 scaffold_14906:12815094-12815238 - dgr_28 candidate-rescued TTT----AT----CG-------AAATTTATATATATACAA-------AACACATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGTTC---------TA---CAAGAGTGT--------------------------------------------------------------------------
droAna3 scaffold_13340:7215155-7215311 + dan_56 confident AAT----AT----TTCAGAATATT---------------AAGT-TTT--CACGTCCCGCGTTGAAGGTGTTACCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAAAATCACCAT--CCTC---CGTAATGTTCT-------------AGT---------------------G-------------------------------CTG
droBip1 scf7180000396708:1638831-1638995 - TAT----TT----CTA---AAACA---------------AAGT-TTT--CACGTCCCGCGTTGAAAGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAAAATCACCAT--CCAT---CGTAATTTTCTGGT-AA-GATAGTAGT---------------------G-------------------------------CTG
droKik1 scf7180000302313:151142-151302 - TAT----ATTTTTTT--------C---------------AAGTGTTT--CACATCCCGCGTTGCTTGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGAGTCATCAT--CATC---CGCAAGTGC-TTATAAA-G-----------------------GACACGA---------------------------------A
droFic1 scf7180000452523:122331-122487 - T------------TTA---AGGAA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACACAATCACTATGAAATCCGGCGAAAGTGA-C--------------------------------TGAAAG-------------------------------ACG
droEle1 scf7180000486474:1729416-1729570 - CATATATTT----TTA---AAGTA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CGAAAGTGA-CG--------------------------------------------------------------------ATG
droRho1 scf7180000759657:23976-24119 - CAG----TT----TTAA--CAGTA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CGAAAG-----------------------------------------------------------------------------
droBia1 scf7180000299102:622742-622901 - CA-------------A---AAATA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CAAAAGTGC-CGAG-AAAG-ATGCGCC---------------------G-------------------------------CTG
droTak1 scf7180000411269:86540-86711 - CGTCGAGTT----TTAA-AAAGAA---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CAAAAGTGC-CAAAGAA-GGATGCGCC---------------------G-------------------------------CTG
droEug1 scf7180000409804:92893-93030 - T-------------TA---AAGTA---------------AACTGTTT--CACATCCCACGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACACAATCACTAT--AATC---CGAAAG-----------------------------------------------------------------------------
dm3 chr3R:12681952-12682102 - dme-mir-iab-8 Known_mirbase T-------------TAA------A---------------AAGTGTTT--CACATCCCACGTTGTTAGTGCTCTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCAT--TATT---CAAAAGTGC-TGAA-A--------------------------ATTATG---------------------------------CG
droSim2 3r:8574078-8574225 + dsi-mir-iab-8 Known_mirbase T-------------TA-------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCAT--TATC---CAAAAGTGC-TGAA-A--------------------------ATTA-----------------------------------TG
droSec2 scaffold_12:1472206-1472381 + dse_312 confident A------------TTAA------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCAT--TATC---CAAAAGTGC-TGAA-A--------------------------ATTATG---------CCGTGTCGCGGATCTAGATGCAGATA
droYak3 3R:11708925-11709080 + dya_90 confident CAG----TA----TTAA------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCTT--AGTC---CAAAAGTGC-TGAA-A--------------------------ATTACG---------------------------------CG
droEre2 scaffold_4770:8952374-8952529 + der_113 confident GAG----TC----TTAA------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCTT--AATC---CAAAAGTGC-TGAA-A--------------------------ATTATA---------------------------------CG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CAC----GT----TTAA------A---------------TTCAGTTCGACATATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTCATCCT--A------CATAACCGC-TGAA-AG----------------------AAAATTACGA-------------------------------ATGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191543.00543025562505
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................20164.0064015191128
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................21146.00460393004
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................22124.00242192001
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................24111.0011081002
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................20110.0010010009
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2312.002020000
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................2412.002000002
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................2112.002020000
...............................................................................TTACGTATACTGAAGGTTA...........................................................................................................................................................1912.002000002
...............................................................................TTACGTATACTGAAGGTATACT........................................................................................................................................................2211.001000001
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2211.001010000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................2011.001010000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2111.001000001
..................................................................................CGTATACTGAAGGTATACCGG......................................................................................................................................................2111.001010000
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2511.001000001
.....................................................................................................................GGATACATTCAGTATACGTATA..................................................................................................................2211.001010000
....................................................................................................................AGGATACATTCAGTATACGT.....................................................................................................................2011.001000001
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1911.001010000
................................................................................TACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2411.001010000
...............................................................................TTACGTATACTGAAGGTAA...........................................................................................................................................................1911.001000001
....................................................ATCCCGCGTTGCTGGTGTTTCCTCGTG..............................................................................................................................................................................2711.001100000
...............................................................................TTACGTATACTGAAGGTATAT.........................................................................................................................................................2111.001001000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1811.001010000
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................2311.001010000
dp5
CA-----------------------------------------GTTCGACGTATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGTTCATCCT--A------CATAACCGC-TGAA-AG----------------------AAAATTACGA-------------------------------GTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................211736.007360611562815690110
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191390.0039012410153799060
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................201370.00370029961037311040
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................221326.003260105157351552070
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................241183.001830484031001243
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................20132.003203110000000
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................19130.003003000000000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................18128.002802800000000
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23120.002001210100060
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................25115.00150700112040
....................................................................................................................AGGATACATTCAGTATACGTATA..................................................................................................................23111.00110080200010
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................21111.001101100000000
.....................................................................................................................GGATACATTCAGTATACGTATA..................................................................................................................2216.0060060000000
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2516.0060200002020
..................................................................................CGTATACTGAAGGTATACCGGA.....................................................................................................................................................2215.0050200300000
....................................................................................................................AGGATACATTCAGTATACGTA....................................................................................................................2114.0040130000000
....................................................................................................................AGGATACATTCAGTATACGTAT...................................................................................................................2214.0040310000000
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2014.0040000004000
...............................................................................TTACGTATACTGAAGGTATACA........................................................................................................................................................2214.0040210000010
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2314.0040400000000
.................................................................................ACGTATACTGAAGGTATAC.........................................................................................................................................................1913.0030300000000
....................................................................................................................AGGATACATTCAGTATACGT.....................................................................................................................2013.0030000002010
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................2412.0020000001010
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2112.0020200000000
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................1812.0020100100000
........................................................................................................................TACATTCAGTATACGTATACGT...............................................................................................................2211.0010000001000
......................................................................................................................GATACATTCAGTATACGTATAC.................................................................................................................2211.0010010000000
.................................................................................ACGTATACTGAAGGTATACCGG......................................................................................................................................................2211.0010100000000
........................................................................................................................TACATTCAGTATACGTATA..................................................................................................................1911.0010100000000
...............................................................................TTACGTATACTGAAGGTTA...........................................................................................................................................................1911.0010000001000
.A-----------------------------------------GTTCGACGTATCCCGCGTTGCT............................................................................................................................................................................................2311.0010000100000
...............................................................................TTACGTATACTGAAGGTATTA.........................................................................................................................................................2111.0010000100000
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................2111.0010000001000
...............................................................................TTACGTATACTGAAGGTATACT........................................................................................................................................................2211.0010000000010
...............................................................................TTACGTATACTGAAGGTATTT.........................................................................................................................................................2111.0010000000010
....................................................................................................................AGGATACATTCAGTATACGTATAC.................................................................................................................2411.0010100000000
.................................................................................ACGTATACTGAAGGTATACCG.......................................................................................................................................................2111.0010100000000
..................................................................................CGTATACTGAAGGTATACCGG......................................................................................................................................................2111.0010100000000
................................................................................TACGTATACTGAAGGTATACA........................................................................................................................................................2111.0010100000000
droWil2
-------------------------------------------GTTTCACACATCCCGCGTTGTTGGTGTTTCATCGTGTTACGTATACTGAAGGTATACCGGATAGCATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGATTCATCT---------------------GGA-AA-G-----------------TG---ACCGGT-ACCCGGTGACCGTTTCG--------------TATGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191236.002361128672317
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................211224.0022411771432
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................201135.001350776448
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................24187.00870580290
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................22166.00660411222
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23124.0024017070
....................................................................................................................AGGATACATTCAGTATACGTA....................................................................................................................21116.0016040102
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................25114.001404190
..................................................................................CGTATACTGAAGGTATACCGGA.....................................................................................................................................................22113.0013110110
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................18113.0013013000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................20111.0011011000
............................................................TTGTTGGTGTTTCATCGTG..............................................................................................................................................................................19110.0010000100
....................................................................................................................AGGATACATTCAGTATACGT.....................................................................................................................2019.00904320
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1919.00909000
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2319.00909000
....................................................................................................................AGGATACATTCAGTATACGTAT...................................................................................................................2216.00604020
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2514.00401030
....................................................................................................................AGGATACATTCAGTATACGTATA..................................................................................................................2313.00301020
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................2112.00202000
...............................................................................TTACGTATACTGAAGGTATACA........................................................................................................................................................2212.00202000
.....................................................................................................................GGATACATTCAGTATACGTAT...................................................................................................................2112.00202000
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................2412.00201010
..............................................................................GTTACGTATACTGAAGGTATAC.........................................................................................................................................................2212.00202000
..........................................................CGTTGTTGGTGTTTCATCGTG..............................................................................................................................................................................2112.00200020
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2012.00202000
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................2111.00100100
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................1811.00100010
................................................................................TACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2411.00101000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2111.00101000
....................................................ATCCCGCGTTGTTGGTGTTTCATCGTG..............................................................................................................................................................................2711.00100010
.................................................................................ACGTATACTGAAGGTATAC.........................................................................................................................................................1911.00101000
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2211.00101000
...............................................................................TTACGTATACTGAAGGTATACG........................................................................................................................................................2211.00101000
...............................................................................TTACGTATACTGAAGGTATACCGGTA....................................................................................................................................................2611.00101000
.......................................................................................................................ATACATTCAGTATACGTATACG................................................................................................................2211.00100010
.................................................................................ACGTATACTGAAGGTATA..........................................................................................................................................................1811.00101000
................................................................................TACGTATACTGAAGGTATACA........................................................................................................................................................2111.00101000
....................................................................................................................AGGATACATTCAGTATACGTC....................................................................................................................2111.00101000
....................................................................................................................AGGATACATTCAGTATACGTATAA.................................................................................................................2411.00101000
................................................................................................................ACTCAGGATACATTCAGT...........................................................................................................................1811.00100100
................................................................................TACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2411.00101000
......................................................CCCGCGTTGTTGGTGTTTCATCGTG..............................................................................................................................................................................2511.00100100
droVir3
A------------------------------------------------CACATCCCGCGTCGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCTACAA--T---------AAG---------------------------------------------------------------------------TGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................1911125.0011251111000121125139100001011106926422125211931900148000011200000000000000000000117800000001000100000
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................221694.0069410205540605040000413010328010211206237117040000049000000000000000000010102000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................241635.006350023201400000000000000008000001708658242050100024000000000000000000000002000000000000000
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................211530.0053000201502010100003102103160002380722485020000032000000000000000000000201000000000000000
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................201344.00344006710723801500001101005110000054501862020000011000000000000000000010400000000000000110
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................231306.0030610132090101000001101020150000069401583070000143000000000000000000000100000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................251149.00149000015000000000000001100000031171358070000015000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................211121.00121002009010400000000003000001013316270100010012000000000000000000000100000000000000000
....................................................................................................................AGGATACATTCAGTATACGT.....................................................................................................................20190.009000000110000000000000061000000152151707000006000000000000000000000100000000000000000
....................................................................................................................AGGATACATTCAGTATACGTA....................................................................................................................21181.00810001010000000000000000100000162582402000003000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................25168.00680020030000000000001000010000181751301000006000000000000000000000100000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................24140.004000100800000000000000000000004315020000014000000000000000000000200000000000000000
....................................................................................................................AGGATACATTCAGTATACGTAT...................................................................................................................22125.00250000000000000000000000000000782601000000000000000000000100000000000000000000000
....................................................................................................................AGGATACATTCAGTATACGTATA..................................................................................................................23123.00230010000000000000000000000000960601000000000000000000000000000000000000000000000
.....................................................................................................................GGATACATTCAGTATACGTATA..................................................................................................................22121.00210052000000000000000000000000241401000000000000000000000000010000100000000000000
..................................................................................CGTATACTGAAGGTATACCGGA.....................................................................................................................................................22116.00160010000100000000000000100000631300000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................20116.001600150000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................21115.001500141000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGATAGGATACACT..........................................................................................................................................36114.00140000000000000000000000000000000000000000010000000003020002600000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGATAGGATACACTC.........................................................................................................................................37113.00130000000000000000000000000000000000000000000000000000220010800000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCC.......................................................................................................................................................2318.0080000000000000000000000000000303200000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATAAA........................................................................................................................................................2218.0080000000000000000000000000000221200001000000000000000000000000000000000000000000
....................................................................................................................AGGATACATTCAGTATACGTAA...................................................................................................................2218.0080000000000000000000000000000022300000000000000000000000000000100000000000000000
.................................................................................ACGTATACTGAAGGTATACCGG......................................................................................................................................................2217.0070030000000000000000000000000111100000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................1817.0070000000101000000000020000000010101000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACA........................................................................................................................................................2217.0070020000000000000000000000000100400000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1816.0060060000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATAT.........................................................................................................................................................2116.0060010000000000010000000000000210100000000000000000000000000000000000000000000000
.....................................................................................................................GGATACATTCAGTATACGTAT...................................................................................................................2115.0050020000000000000000000000000021000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGTA....................................................................................................................................................2615.0050000000000000000000000002000020100000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGAA....................................................................................................................................................2615.0050000000000000000000000000000111200000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTAA...........................................................................................................................................................1914.0040000010000000000000000000000100100000000000000000000000000000100000000000000000
....................................................................................................................AGGATACATTCAGTATACG......................................................................................................................1914.0040000000000000000000000000000100200000000000000000000000000001000000000000000000
...............................................................................TTACGTATACTGAAGGTAC...........................................................................................................................................................1913.0030000020000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................2113.0030000020000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................ACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2313.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATC..........................................................................................................................................................2013.0030000000100000000000000000000010000000000000000000000000000000100000000000000000
.............................................................CGCTGGTGTTTCCTCGTG..............................................................................................................................................................................1813.0030000000000000000000000000000020100000000000000000000000000000000000000000000000
.....................................................................................ATACTGAAGGTATACCGG......................................................................................................................................................1813.0030000010000000000000000000000010000000001000000000000000000000000000000000000000
..................................................................................CGTATACTGAAGGTATACCGG......................................................................................................................................................2112.0020010000000000000000000000000000001000000000000000000000000000000000000000000000
....................................................ATCCCGCGTCGCTGGTGTTTCCTCGTG..............................................................................................................................................................................2712.0020000010000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATAAAA.......................................................................................................................................................2312.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
...................................................................................................................CAGGATACATTCAGTATACGTA....................................................................................................................2212.0020000000000000000000000000000101000000000000000000000000000000000000000000000000
..................................................................................................................TCAGGATACATTCAGTATACGTATA..................................................................................................................2512.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
...........................................................GTCGCTGGTGTTTCCTCGTG..............................................................................................................................................................................2012.0020010000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................TTACGTATACTGAAGGTATACT........................................................................................................................................................2212.0020000000000000000010000000000000000000001000000000000000000000000000000000000000
......................................................CCCGCGTCGCTGGTGTTTCCTCGTG..............................................................................................................................................................................2512.0020000000000000000000000000000000001000000000000000010000000000000000000000000000
....................................................................................................................AGGATACATTCAGTATACGTT....................................................................................................................2112.0020000000000000000000000000000020000000000000000000000000000000000000000000000000
..............................................................................GTTACGTATACTGAAGGTAT...........................................................................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GATACATTCAGTATACGTAT...................................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GATACATTCAGTATACGTATAA.................................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................AGGATACATTCAGTATACGTG....................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................CAGGATACATTCAGTATACGTAT...................................................................................................................2311.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGCA....................................................................................................................................................2611.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................ACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2311.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCAA......................................................................................................................................................2411.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGATAGGATACACTCT........................................................................................................................................3811.0010000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................GGATACATTCAGTATACGTA....................................................................................................................2011.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................CGTCGCTGGTGTTTCCTCGTG..............................................................................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGG.....................................................................................................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGATAGGATACA............................................................................................................................................3411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................TCAGGATACATTCAGTATACGT.....................................................................................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTT............................................................................................................................................................1811.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................GTTACGTATACTGAAGGTATA..........................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGAT....................................................................................................................................................2611.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGTC....................................................................................................................................................2611.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GTCGCTGGTGTTTCCTCGTA..............................................................................................................................................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCT.......................................................................................................................................................2311.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGAG....................................................................................................................................................2611.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................ACGTATACTGAAGGTATACCGT......................................................................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................GGATACATTCAGTATACGTATAA.................................................................................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................AGGATACATTCAGTATACGTC....................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2411.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGTC.....................................................................................................................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................GGATACATTCAGTATACGTAA...................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................GGATACATTCAGTATACGT.....................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GATACATTCAGTATACGTATAT.................................................................................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATATA........................................................................................................................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
droMoj3
T--------------------------------------------TTCACACATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGCTCAACA----ATT---CG-----------------------CTCCTGAAAAGTGTAAAATCTCGA------------A------------------TCGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................221891.0089121511016559
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191603.006031600682427
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................211595.005954654001179
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................201147.001471073001522
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................241104.0010466601274
.....................................................................................................................GGATACATTCAGTATACGTATA..................................................................................................................22192.00924000880
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................20154.00544900050
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23133.00332510133
....................................................................................................................AGGATACATTCAGTATACGTATA..................................................................................................................23123.00231000220
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................24116.00161000510
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................21116.00161500010
....................................................................................................................AGGATACATTCAGTATACGTA....................................................................................................................21111.0011020090
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................25110.0010200017
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1918.008800000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1818.008800000
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2517.007310012
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2315.005500000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2114.004100102
..................................................................................CGTATACTGAAGGTATACCGGA.....................................................................................................................................................2214.004010030
......................................................................................................................GATACATTCAGTATACGTATAC.................................................................................................................2214.004000040
...............................................................................TTACGTATACTGAAGGTATACA........................................................................................................................................................2213.003100020
....................................................................................................................AGGATACATTCAGTATACGT.....................................................................................................................2013.003100002
.....................................................................................................................GGATACATTCAGTATACGTAT...................................................................................................................2112.002200000
......................................................................................................................GATACATTCAGTATACGTATA..................................................................................................................2112.002100010
....................................................................................................................AGGATACATTCAGTATACGTAT...................................................................................................................2212.002200000
.....................................................................................................................GGATACATTCAGTATACGTAC...................................................................................................................2112.002000020
...............................................................................TTACGTATACTGAAGGTAC...........................................................................................................................................................1911.001000001
.................................................................................ACGTATACTGAAGGTATA..........................................................................................................................................................1811.001100000
...............................................................................TTACGTATACTGAAGGTATACG........................................................................................................................................................2211.001000010
...................................................................................GTATACTGAAGGTATACC........................................................................................................................................................1811.001000010
...............................................................................TTACGTATACTGAAGGTATAT.........................................................................................................................................................2111.001100000
.....................................................................................................................GGATACATTCAGTATACGTATT..................................................................................................................2211.001000010
...............................................................................TTACGTATACTGAAGGTATACCGGTA....................................................................................................................................................2611.001100000
......................................................................................................GATAGGATACACTCAGGATACATTCAGT...........................................................................................................................2811.001000001
.................................................................................ACGTATACTGAAGGTATACCGG......................................................................................................................................................2211.001100000
..............................................................................GTTACGTATACTGAAGGTATAC.........................................................................................................................................................2211.001100000
.......................................................................................................ATAGGATACACTCAGGAT....................................................................................................................................1811.001001000
...............................................................................TTACGTATACTGAAGGTTC...........................................................................................................................................................1911.001000001
.....................................................................................................................GGATACATTCAGTATACGT.....................................................................................................................1911.001100000
......................................................................................................................GATACATTCAGTATACGTATAA.................................................................................................................2211.001000010
.................................................................................................................CTCAGGATACATTCAGTA..........................................................................................................................1811.001000001
.....................................................................................ATACTGAAGGTATACCGGT.....................................................................................................................................................1911.001000001
......................................................CCCGCGTTGCTGGTGTTTCCTCGTG..............................................................................................................................................................................2511.001000010
.................................................................................................................CTCAGGATACATTCAGTATACGTATA..................................................................................................................2611.001000001
......................................................................................................................GATACATTCAGTATACGTAT...................................................................................................................2011.001100000
................................................................................................ATACCGGATAGGATACACTCAGGAT....................................................................................................................................2511.001000001
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................2111.001000001
...............................................................................TTACGTATACTGAAGGTATACCT.......................................................................................................................................................2311.001000010
......................................................................................................GATAGGATACACTCAGGATAC..................................................................................................................................2111.001100000
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................1811.001100000
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2211.001100000
...........................................................................CGTGTTACGTATACTGAAGGTATAC.........................................................................................................................................................2511.001100000
droGri2
TTT----AT----CG-------AAATTTATATATATACAA-------AACACATCCCGCGTTGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGGTTC---------TA---CAAGAGTGT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................19132.00321319
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................20118.0018171
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................21115.0015150
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................2219.00990
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................2414.00440
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................2114.00440
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1813.00330
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1912.00220
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................2412.00211
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................2012.00220
droAna3
AAT----AT----TTCAGAATATT---------------AAGT-TTT--CACGTCCCGCGTTGAAGGTGTTACCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAAAATCACCAT--CCTC---CGTAATGTTCT-------------AGT---------------------G-------------------------------CTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191232.0023244001015325
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................22189.008929442536
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................24147.00473330308
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................20145.00452540088
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................21129.00292070020
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................24119.00193000124
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................21118.00183001113
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................25111.0011300134
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23110.0010600031
........................................................................................................................TACATTCAGTATACGTATACGT...............................................................................................................2216.006000060
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1814.004400000
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................2114.004310000
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2014.004110020
.....................................................................................................................GGATACATTCAGTATACGTATA..................................................................................................................2214.004130000
....................................................................................................................AGGATACATTCAGTATACGT.....................................................................................................................2013.003000030
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2512.002200000
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2212.002200000
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1912.002200000
...............................................................................TTACGTATACTGAAGGTATACCA.......................................................................................................................................................2311.001100000
....................................................................................................................AGGATACATTCAGTATACGTAT...................................................................................................................2211.001100000
.....................................................................................................................GGATACATTCAGTATACGTAT...................................................................................................................2111.001010000
...............................................................................TTACGTATACTGAAGGTATACCGTTG....................................................................................................................................................2611.001000010
.................................................................................ACGTATACTGAAGGTATACC........................................................................................................................................................2011.001100000
...............................................................................TTACGTATACTGAAGGTATACCGGTGT...................................................................................................................................................2711.001000010
................................................................................TACGTATACTGAAGGTATACCGTT.....................................................................................................................................................2411.001100000
.............................................................................TGTTACGTATACTGAAGGTAG...........................................................................................................................................................2111.001000010
.............................................................................TGTTACGTATACTGAAGGTATT..........................................................................................................................................................2211.001100000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2111.001100000
..............................................................................................................ACACTCAGGATACATTCAG............................................................................................................................1911.001010000
...............................................................................TTACGTATACTGAAGGTATACCGC......................................................................................................................................................2411.001000010
..................................................................................CGTATACTGAAGGTATACCGG......................................................................................................................................................2111.001100000
.............................................................................TGTTACGTATACTGAAGGTATACC........................................................................................................................................................2411.001010000
...............................................................................TTACGTATACTGAAGGTAC...........................................................................................................................................................1911.001000010
...............................................................................TTACGTATACTGAAGGTACT..........................................................................................................................................................2011.001100000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................2011.001100000
.............................................................................TGTTACGTATACTGAAGGTATG..........................................................................................................................................................2211.001100000
.............................................................................TGTTACGTATACTGAAGGT.............................................................................................................................................................1960.171100000
droBip1
TAT----TT----CTA---AAACA---------------AAGT-TTT--CACGTCCCGCGTTGAAAGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAAAATCACCAT--CCAT---CGTAATTTTCTGGT-AA-GATAGTAGT---------------------G-------------------------------CTGSizeHit CountTotal NormTotal
No Reads
droKik1
TAT----ATTTTTTT--------C---------------AAGTGTTT--CACATCCCGCGTTGCTTGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTTGCACAGAGTCATCAT--CATC---CGCAAGTGC-TTATAAA-G-----------------------GACACGA---------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
T------------TTA---AGGAA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACACAATCACTATGAAATCCGGCGAAAGTGA-C--------------------------------TGAAAG-------------------------------ACGSizeHit CountTotal NormTotal
No Reads
droEle1
CATATATTT----TTA---AAGTA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CGAAAGTGA-CG--------------------------------------------------------------------ATGSizeHit CountTotal NormTotal
No Reads
droRho1
CAG----TT----TTAA--CAGTA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CGAAAG-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CA-------------A---AAATA---------------AAGTGTTT--CACATCCCGCGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CAAAAGTGC-CGAG-AAAG-ATGCGCC---------------------G-------------------------------CTGSizeHit CountTotal NormTotal
No Reads
droTak1
CGTCGAGTT----TTAA-AAAGAA---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCACCAT--AATC---CAAAAGTGC-CAAAGAA-GGATGCGCC---------------------G-------------------------------CTGSizeHit CountTotal NormTotal
No Reads
droEug1
T-------------TA---AAGTA---------------AACTGTTT--CACATCCCACGTTGCTCGTGCTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACACAATCACTAT--AATC---CGAAAG-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-------------TAA------A---------------AAGTGTTT--CACATCCCACGTTGTTAGTGCTCTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCAT--TATT---CAAAAGTGC-TGAA-A--------------------------ATTATG---------------------------------CGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................1916832.006832000000000000000000000138000000000001201210401403114301000000000000000000000000000000000000000000011000101000000000001001000000000010000000000001002072288010400000000000020000330001010000002125146890009001395000000300000000010207910213101714140000000083020000112260005300000000000200000000086334859682037011016003233332100510265205030402900206245003295501197303022090051718382124233217221000010
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................221923.00923000000000100000000000004000000000000000000103000003000000000000000000000000000000001000000000101200006000000101000401000000000010000100000010000000011400000000000000012010024549030250000071007000013090000000000000000055462049146001600000000027250300001543200240000000000000000000000515140400102200001172000140110520010000033000011002081322000000
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................201564.0056400000000000000000000000000000000000000000000301000000000100000000000000000000000000000000100000030002010000000000000000000000000000000000000000000001800000000000000000010005020000000000040300001105000000000000000002225004302128000042001102000098500035000001000000000000000020002020161000000040005010040450001000053000030001603751377000000
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................211486.004860000000000100000000000020000000000001110002030000020000000000000000000000000000000000000000000013001400000002000000000000000010010000000000001000000030000000000000002501002241301091000004142100002050000000000000000043130083610011000091007504000092320020000000000000000000000011404030082000100022001011110050000100010000013003022010000000
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................231194.0019400000000100010000000000200000000000000000000000000000000010000000000000000000000000030000060210215200621001023222107000000000000000000000000000000000020000000000000000102000100000000000002103000017028000000000000000000001000100000000000022000000132001000000000000000000000000001100190000000110000000001100000000900004000020100000000
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................241167.001670000000000000000000000000000000000000000000010000000000001100000000000000000000000050000001000001000000000000000000000000000000010100000000000000000000000000000000000100001310010220000033212000016012000000000000000003411004200006000000001300000080002000000000000000000000000100000070000001300000100000000000000600006000000000000000
.....................................................................................................................GGATACATTCAGTATACGTTTA..................................................................................................................221165.001650000000020000000000000000000000000000000000000000000000045000000000000000000000003402135100206003008102701000000007201100000000000000000000000000000000000000000000000000000000031100000000000000000020000000000000000000000000000000000000000000000020000000000000000000000000000000000020000001100000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................241155.001550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000001401000080800000000000001000111000000000000000000100000002000000000000000000000000000000000031100000052000110020110000000041000023000040110000000
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................21199.0099000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001100000000000000000000000000000000000401000020200000000000000000002000010000000000001000000040002000000000000000000000000100000015000000092000000030320000000017000020001020020000000
...............................................................................TTACGTATACTGAAGGTATACCGGATC...................................................................................................................................................27160.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................25156.00560000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000010000000000000000000000000000000000000000000001000000010000000000000000001000000000000000001900000030600000000000000000110000030000000000001200000071000000000000000000000000000000000030000000010000000000000000000100001000000000000000
............................................................TTGTTAGTGCTCTCTCGTG..............................................................................................................................................................................19150.00500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000001700000094000000000000000000011800002000010000000000
....................................................................................................................AGGATACATTCAGTATACGTTT...................................................................................................................22149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000310000100000001100600000000000000000000000000000000001000000000000000010000000000000000000500000040000000000000000000001000000000000000000200000060001000000000000000000000000011000050000000010000000100000000000300001000000001000000
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................25142.0042000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000701000020200000000000000000112000130000000000002200000051000000000000000000000000000000000030000001000000000001000000000300001000000000000000
....................................................................................................................AGGATACATTCAGTATACGTTTA..................................................................................................................23138.0038000000001000000000000000000000000000000000000000000000000000000000000000000000000305400000000000100050000000000000000000000000000000000000000100000000000000000000000000100001000000000000100000000100000000000000000011000000000000000000000000050000000000000000000000000000000000030000001000001000000000000000100001000000000000000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................21124.0024000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000303000020000000000000000000001000010000000000000000000001001000000000000000000000010000000040000000000000000100000000000100001001000000000000
......................................................................................................................GATACATTCAGTATACGTTTAA.................................................................................................................22124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000120000000100000000000000000000200000000000000000000
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................18118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000010000000000000000000000000000000000080000000201000000000000000000000000001020000000000
...............................................................................TTACGTATACTGAAGGTATACCATC.....................................................................................................................................................25117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GTTGTTAGTGCTCTCTCGTG..............................................................................................................................................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000300000000000000000000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................18113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010001000000000000000000000000100000040000000000010000000100000000100000001010000000000
...............................................................................TTACGTATACTGAAGGTAG...........................................................................................................................................................19112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000020001000000020000100400000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACATC......................................................................................................................................................24112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATAATC.......................................................................................................................................................23111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GGATACATTCAGTATACGTTT...................................................................................................................21111.0011000000100000000000000000000000000000000000000000000000000000000000000000000000000200400000000000000000000000000100000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCGT......................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000100001100000000200000000000000000000
...............................................................................TTACGTATACTGAAGGTATACA........................................................................................................................................................22110.0010000000000000000000000000000000000000000000101000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000001000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000010000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2418.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTAC...........................................................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000010000000000010000101100001000000000000000000000000
....................................................................................................................AGGATACATTCAGTATACGTT....................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000001000000000000000000000000200000000000000000000
...............................................................................TTACGTATACTGAAGGTAA...........................................................................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000010000101000000000100000001000000000000
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000100000000000000100000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................TACATTCAGTATACGTTTACGT...............................................................................................................2216.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000001000000000000000000200000000000000000000
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2016.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000010000000000000000000000000000000001001000000000000
.....................................................................................................................GGATACATTCAGTATACGTTTAA.................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000100000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GATACATTCAGTATACGTTTA..................................................................................................................2116.006000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TGTTACGTATACTGAAGGTATA..........................................................................................................................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2315.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...............................................................................TTACGTATACTGAAGGT.............................................................................................................................................................1714.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CGTTGTTAGTGCTCTCTCGTG..............................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000100001000000000000000
......................................................................................................................GATACATTCAGTATACGTTTAT.................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000
........................................................................................................TAGGATACACTCAGGATACATTCAGT...........................................................................................................................2614.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000
.....................................................................................................................GGATACATTCAGTATACG......................................................................................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATAT.........................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TGTTACGTATACTGAAGGTA............................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................................TTACGTATACTGAAGGTT............................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000001000000
........................................................................................................................TACATTCAGTATACGTTTA..................................................................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGAA....................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.....................................................................................ATACTGAAGGTATACCGG......................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GATACATTCAGTATACGTTTCA.................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ACGTATACTGAAGGTATACCGG......................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ATAGGATACACTCAGGATACAT................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATC..........................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ACGTTGTTAGTGCTCTCTCGTG..............................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................GATAGGATACACTCAGGATACATTCAGT...........................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................TACATTCAGTATACGTTTACGA...............................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................CGTATACTGAAGGTATACCGGA.....................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CATTCAGTATACGTTTAA.................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGATAA..................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATACCGGAATC..................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATATT........................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................GTTACGTATACTGAAGGTATACCGG......................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ATACATTCAGTATACGTTT...................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................AGTGCTCTCTCGTGTTACGTA.......................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................TTACGTATACTGAAGGTATACCGATC....................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GATAGGATACACTCAGGATACATTC..............................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T-------------TA-------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCAT--TATC---CAAAAGTGC-TGAA-A--------------------------ATTA-----------------------------------TGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................................GGATACATTCAGTATACGTTTACG................................................................................................................241196.001960000194200000000000
....................................................................................................................AGGATACATTCAGTATACGTTTACG................................................................................................................251142.001420000142000000000000
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................241123.001230001026110223933018000
....................................................................................................................AGGATACATTCAGTATACGTTT...................................................................................................................221109.001090001107100000000000
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................181106.00106000099601000000000
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191105.001051241361035112300000
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................201104.00104022884200000501000
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................22174.00740752440004202701000
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................21148.0048040305010011600000
....................................................................................................................AGGATACATTCAGTATAC.......................................................................................................................18138.0038000038000000000000
....................................................................................................................AGGATACATTCAGTATACG......................................................................................................................19134.0034000033100000000000
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23134.00340021140000010016000
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................25127.002702516000251401000
....................................................................................................................AGGATACATTCAGTATACGT.....................................................................................................................20120.0020000020000000000000
.....................................................................................................................GGATACATTCAGTATACGTTT...................................................................................................................21119.0019000018100000000000
.....................................................................................................................GGATACATTCAGTATACG......................................................................................................................18115.0015000015000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................25114.001401000020221006000
.....................................................................................................................GGATACATTCAGTATACGT.....................................................................................................................19111.0011000011000000000000
.....................................................................................................................GGATACATTCAGTATACGTT....................................................................................................................20111.0011000011000000000000
....................................................................................................................AGGATACATTCAGTATACGTT....................................................................................................................2119.00900009000000000000
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2318.00800014000011001000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1818.00800016100000000000
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2217.00700024000000001000
.....................................................................................................................GGATACATTCAGTATACGTTTA..................................................................................................................2217.00700005000000200000
............................................................TTGCTCGTGCTATCTCGTG..............................................................................................................................................................................1916.00600300000001200000
................................................................................TACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2415.00501002001010000000
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................2414.00400010000002001000
.....................................................................................................................GGATACATTCAGTATACGTTTAC.................................................................................................................2314.00400004000000000000
......................................................................................................................GATACATTCAGTATACGTTTAA.................................................................................................................2213.00300010000020000000
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................2113.00300030000000000000
.......................................................................................................ATAGGATACACTCAGGATACAT................................................................................................................................2212.00200000000000002000
...............................................................................TTACGTATACTGAAGGTATACCGGG.....................................................................................................................................................2512.00200200000000000000
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1912.00200002000000000000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................2012.00200002000000000000
...........................................................GTTGCTCGTGCTATCTCGTG..............................................................................................................................................................................2012.00200200000000000000
...............................................................................TTACGTATACTGAAGGTATACCGGAT....................................................................................................................................................2612.00201001000000000000
......................................................................................................................GATACATTCAGTATACGT.....................................................................................................................1811.00100001000000000000
...............................................................................TTACGTATACTGAAGGTAC...........................................................................................................................................................1911.00101000000000000000
...............................................................................TTACGTATACTGAAGGT.............................................................................................................................................................1711.00100000010000000000
...............................................................................TTACGTATACTGAAGGTATACCGTT.....................................................................................................................................................2511.00100000000000001000
...............................................................................TTACGTATACTGAAGGTATACT........................................................................................................................................................2211.00100000000000100000
................................................................................TACGTATACTGAAGGTATACCGGAT....................................................................................................................................................2511.00100001000000000000
...............................................................................TTACGTATACTGAAGGTATACCA.......................................................................................................................................................2311.00100100000000000000
..........................................................CGTTGCTCGTGCTATCTCGTG..............................................................................................................................................................................2111.00100000000100000000
...............................................................................TTACGTATACTGAAGGTATACCGGC.....................................................................................................................................................2511.00100000000010000000
.....................................................................................ATACTGAAGGTATACCGG......................................................................................................................................................1811.00100000000001000000
....................................................................................................................AGGATACATTCAGTATACGTTTAC.................................................................................................................2411.00100001000000000000
........................................................................................................TAGGATACACTCAGGATACATTCAGT...........................................................................................................................2611.00100000000000100000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2111.00100000000001000000
....................................................................................................................AGGATACATTCAGTATACGTTTA..................................................................................................................2311.00100000000000100000
...............................................................................TTACGTATACTGAAGGTAA...........................................................................................................................................................1911.00100000000000001000
......................................................................................................................GATACATTCAGTATACGTTTA..................................................................................................................2111.00100001000000000000
......................................................................................................GATAGGATACACTCAGGATACATTCA.............................................................................................................................2611.00101000000000000000
.................................................................................ACGTATACTGAAGGTATACCG.......................................................................................................................................................2111.00100000000000001000
.......................................................................................................................ATACATTCAGTATACGTTTAT.................................................................................................................2111.00100000000100000000
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2011.00101000000000000000
..............................................................................GTTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2611.00100100000000000000
..........................................................................................................................CATTCAGTATACGTTTACG................................................................................................................1911.00100001000000000000
droSec2
A------------TTAA------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTATCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCAT--TATC---CAAAAGTGC-TGAA-A--------------------------ATTATG---------CCGTGTCGCGGATCTAGATGCAGATASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191185.0018551941327
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................221130.001307916341
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................20170.00703421105
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................24156.0056381170
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................21147.0047311033
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23127.0027122130
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................25117.00176290
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................18115.001500132
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................24110.00101720
....................................................................................................................AGGATACATTCAGTATACGTTTA..................................................................................................................2319.0093330
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2519.0092232
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................2018.0088000
....................................................................................................................AGGATACATTCAGTATACGTTT...................................................................................................................2217.0073121
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1815.0055000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2115.0051400
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................2114.0040220
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................2114.0044000
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2314.0044000
.....................................................................................................................GGATACATTCAGTATACGTTTA..................................................................................................................2213.0031110
............................................................TTGCTCGTGCTATCTCGTG..............................................................................................................................................................................1913.0030030
................................................................................TACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2413.0032010
.....................................................................................ATACTGAAGGTATACCGG......................................................................................................................................................1812.0020020
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1912.0022000
...............................................................................TTACGTATACTGAAGGTATACA........................................................................................................................................................2212.0021001
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2012.0020200
...............................................................................TTACGTATACTGAAGGTATACCCC......................................................................................................................................................2411.0011000
.....................................................................................................................GGATACATTCAGTATACGTTT...................................................................................................................2111.0011000
..........................................................................................................................CATTCAGTATACGTTTAA.................................................................................................................1811.0010010
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2211.0011000
...........................................................GTTGCTCGTGCTATCTCGTG..............................................................................................................................................................................2011.0010010
...............................................................................TTACGTATACTGAAGGTATACT........................................................................................................................................................2211.0010010
...............................................................................TTACGTATACTGAAGGTATACCGTT.....................................................................................................................................................2511.0010100
..................................................................................CGTATACTGAAGGTATACCGGA.....................................................................................................................................................2211.0010010
...............................................................................TTACGTATACTGAAGGTATACCGGATA...................................................................................................................................................2711.0010010
...............................................................................TTACGTATACTGAAGGTAA...........................................................................................................................................................1911.0010100
................................................................................TACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2411.0010100
droYak3
CAG----TA----TTAA------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCTT--AGTC---CAAAAGTGC-TGAA-A--------------------------ATTACG---------------------------------CGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................221529.00529010641731020000
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................211270.00270014112160020000
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191131.001310680145530000
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................20191.009105021140060000
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................24186.00860423950000000
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23123.0023016411010000
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................21116.0016015100000000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................2018.00808000000000
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................2417.00701100050000
....................................................................................................................AGGATACATTCAGTATACGTTTA..................................................................................................................2316.00600420000000
....................................................................................................................AGGATACATTCAGTATACGTTT...................................................................................................................2215.00502300000000
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2315.00505000000000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1814.00404000000000
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2514.00400220000000
.............................................................................TGTTACGTATACTGAAGGTATA..........................................................................................................................................................2213.00300300000000
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2513.00300200010000
.....................................................................................................................GGATACATTCAGTATACGTTTA..................................................................................................................2213.00300300000000
...............................................................................TTACGTATACTGAAGGTATAA.........................................................................................................................................................2112.00202000000000
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................1812.00201100000000
...............................................................................TTACGTATACTGAAGGTATACCGGC.....................................................................................................................................................2512.00200110000000
.....................................................................................................................GGATACATTCAGTATACGTTT...................................................................................................................2112.00200200000000
....................................................................................................................AGGATACATTCAGTATACGTT....................................................................................................................2112.00200200000000
.....................................................................................................................GGATACATTCAGTATACGTTC...................................................................................................................2112.00200200000000
............................................................TTGCTCGTGCTTTCTCGTG..............................................................................................................................................................................1911.00100100000000
.................................................................................ACGTATACTGAAGGTATACC........................................................................................................................................................2011.00101000000000
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2211.00101000000000
.................................................................................ACGTATACTGAAGGTATACCGG......................................................................................................................................................2211.00101000000000
...............................................................................TTACGTATACTGAAGGTATACCGGG.....................................................................................................................................................2511.00101000000000
...................................................................................GTATACTGAAGGTATACCG.......................................................................................................................................................1911.00101000000000
.................................................................................ACGTATACTGAAGGTATAC.........................................................................................................................................................1911.00101000000000
.......................................................................................................................ATACATTCAGTATACGTTTACC................................................................................................................2211.00100100000000
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2011.00100000010000
.................................................................................ACGTATACTGAAGGTATACCGGC.....................................................................................................................................................2311.00100100000000
....................................................................................................................AGGATACATTCAGTATACGTTC...................................................................................................................2211.00100100000000
................................................................................TACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2411.00101000000000
...............................................................................TTACGTATACTGAAGGTAA...........................................................................................................................................................1911.00101000000000
..............................................................................GTTACGTATACTGAAGGTAT...........................................................................................................................................................2011.00100000010000
..............................................................................GTTACGTATACTGAAGGTATAC.........................................................................................................................................................2211.00100100000000
..........................................................CGTTGCTCGTGCTTTCTCGTG..............................................................................................................................................................................2111.00100000010000
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1911.00101000000000
...............................................................................TTACGTATACTGAAGGTATACCGA......................................................................................................................................................2411.00101000000000
...............................................................................TTACGTATACTGAAGGTATACA........................................................................................................................................................2211.00100100000000
..................................................................................CGTATACTGAAGGTATACC........................................................................................................................................................1911.00101000000000
......................................................................................................................GATACATTCAGTATACGTTTAAC................................................................................................................2311.00100100000000
......................................................................................................................GATACATTCAGTATACGTTTAT.................................................................................................................2211.00101000000000
droEre2
GAG----TC----TTAA------A---------------AAGTGTTT--CACATCCCACGTTGCTCGTGCTTTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCTT--AATC---CAAAAGTGC-TGAA-A--------------------------ATTATA---------------------------------CGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................TTACGTATACTGAAGGTAT...........................................................................................................................................................191533.0053369044375810
...............................................................................TTACGTATACTGAAGGTATACC........................................................................................................................................................221264.0026415577198140
...............................................................................TTACGTATACTGAAGGTATAC.........................................................................................................................................................211143.00143962623880
...............................................................................TTACGTATACTGAAGGTATA..........................................................................................................................................................201105.0010555701712140
...............................................................................TTACGTATACTGAAGGTATACCGG......................................................................................................................................................24199.009983501604
...............................................................................TTACGTATACTGAAGGTATACCG.......................................................................................................................................................23134.003428210300
...............................................................................TTACGTATACTGAAGGTATACCGT......................................................................................................................................................24117.001761001000
................................................................................TACGTATACTGAAGGTATACC........................................................................................................................................................21113.001312100000
................................................................................TACGTATACTGAAGGTATAC.........................................................................................................................................................20113.001312000100
...............................................................................TTACGTATACTGAAGGTA............................................................................................................................................................1819.0091000080
................................................................................TACGTATACTGAAGGTATACCGG......................................................................................................................................................2318.0088000000
...............................................................................TTACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2517.0073000400
...............................................................................TTACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2517.0073101200
............................................................TTGCTCGTGCTTTCTCGTG..............................................................................................................................................................................1916.0060100320
................................................................................TACGTATACTGAAGGTATACCG.......................................................................................................................................................2215.0055000000
....................................................................................................................AGGATACATTCAGTATACGTTT...................................................................................................................2215.0051011200
................................................................................TACGTATACTGAAGGTATA..........................................................................................................................................................1913.0033000000
.........................................................ACGTTGCTCGTGCTTTCTCGTG..............................................................................................................................................................................2212.0020000020
.............................................................................TGTTACGTATACTGAAGGTAT...........................................................................................................................................................2112.0020000200
....................................................................................................................AGGATACATTCAGTATACGTTTA..................................................................................................................2312.0021001000
...............................................................................TTACGTATACTGAAGGTATACCCT......................................................................................................................................................2412.0021001000
.....................................................................................................................GGATACATTCAGTATACGTTTA..................................................................................................................2212.0021100000
...............................................................................TTACGTATACTGAAGGTATACCGA......................................................................................................................................................2412.0022000000
................................................................................TACGTATACTGAAGGTAT...........................................................................................................................................................1812.0022000000
..............................................................................GTTACGTATACTGAAGGTATACC........................................................................................................................................................2311.0011000000
........................................................................................................TAGGATACACTCAGGATACATTCA.............................................................................................................................2411.0010000010
................................................................................TACGTATACTGAAGGTATACCGGA.....................................................................................................................................................2411.0011000000
..............................................................................GTTACGTATACTGAAGGTATACCGT......................................................................................................................................................2511.0011000000
..................................................................................CGTATACTGAAGGTATAC.........................................................................................................................................................1811.0011000000
.....................................................................................................................GGATACATTCAGTATACGTT....................................................................................................................2011.0011000000
....................................................................................................................AGGATACATTCAGTATACGTTTAA.................................................................................................................2411.0011000000
................................................................................TACGTATACTGAAGGTATACCGGT.....................................................................................................................................................2411.0011000000
...............................................................................TTACGTATACTGAAGGTATC..........................................................................................................................................................2011.0010000100
..............................................................................GTTACGTATACTGAAGGTATA..........................................................................................................................................................2111.0011000000
............................................................TTGCTCGTGCTTTCTCGTGT.............................................................................................................................................................................2011.0011000000
...........................................................GTTGCTCGTGCTTTCTCGTG..............................................................................................................................................................................2011.0010000100
...............................................................................TTACGTATACTGAAGGTAA...........................................................................................................................................................1911.0010000100
.....................................................................................................................GGATACATTCAGTATACGTTT...................................................................................................................2111.0011000000
...............................................................................TTACGTATACTGAAGGTATACCGGAA....................................................................................................................................................2611.0011000000
...............................................................................TTACGTATACTGAAGGTATT..........................................................................................................................................................2011.0010000100
...............................................................................TTACGTATACTGAAGGTATACCGC......................................................................................................................................................2411.0010100000

Generated: 10/20/2015 at 11:17 PM