dpe_159

TATACATAAATTAATTACTCACTTGTTTAACATATCGCAATTATGTTTGCTTACCAAAACCATTGAAGCCACCAGAATCTTCAATAGTTGTCAATGGCGATCTAGGCCTTTTTACGGTTTCCCGTGTAGACTTAGATTGTACTATATTTTGCAAATTTT *********************************...........(((((......(((.(((((((..........))))))).)))......)))))...(((((.......)))))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo	V111 male body	V057 head
....................................................................................TAGTTGTCAATGGCGATCTAGGCC...................................................	24	0	3	28.33	85	73	6	5	1	0
....................................................................................TAGTTGTCAATGGCGATCTAGGC....................................................	23	0	3	14.00	42	40	0	2	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCCT..................................................	25	0	3	11.67	35	31	4	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCCTT.................................................	26	0	3	6.00	18	13	5	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGG.....................................................	22	0	3	5.33	16	14	0	1	1	0
.............................................................................TCTTCAATAGTTGTCAATGGCGATC.........................................................	25	0	3	2.67	8	8	0	0	0	0
.....................................................................................AGTTGTCAATGGCGATCTAGGCC...................................................	23	0	3	2.67	8	8	0	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCAGAA..................................................................................	27	0	4	1.75	7	6	1	0	0	0
...........TAATTACTCACTTGTTTAACATATCGC.........................................................................................................................	27	0	2	1.50	3	3	0	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGC....................................................	23	1	3	1.33	4	4	0	0	0	0
...........TAATTACTCACTTGTTTAACATATCGCA........................................................................................................................	28	0	2	1.00	2	2	0	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCAG....................................................................................	25	0	4	1.00	4	4	0	0	0	0
...............................................TGCTTACCAAAACCATTGAAGCCACCA.....................................................................................	27	0	4	1.00	4	4	0	0	0	0
................................................................................................................TACGGTTTCCCGTGTAGACA...........................	20	1	1	1.00	1	1	0	0	0	0
......TAAATTAATTACTCACTTGTTTAACA...............................................................................................................................	26	0	2	1.00	2	2	0	0	0	0
...................................................TACCAAAACCATTGAAGCCACCAGAA..................................................................................	26	0	4	0.75	3	3	0	0	0	0
.........................................................................................GTCAATGGCGATCTAGGCC...................................................	19	0	3	0.67	2	0	2	0	0	0
................................................................................TCAATAGTTGTCAATGGCGATCTAGGC....................................................	27	0	3	0.67	2	2	0	0	0	0
....................................................................................TAGTTGTCTATGGCGATCTAGGC....................................................	23	1	3	0.67	2	2	0	0	0	0
.....................................................................................AGTTGTCAATGGCGATCTAGG.....................................................	21	0	3	0.67	2	2	0	0	0	0
.....................................................................................AGTTGTCAATGGCGATCTAGGC....................................................	22	0	3	0.67	2	2	0	0	0	0
......TAAATTAATTACTCACTTGTTTAACATA.............................................................................................................................	28	0	2	0.50	1	1	0	0	0	0
....................................................................................................................................TAGATTGTACTATATTTTGCAC.....	22	1	2	0.50	1	1	0	0	0	0
............AATTACTCACTTGTTTAACATATCG..........................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
...........TAATTACTCACTTGTTTAACATAT............................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
...........TAATTACTCACTTGTTTAACATATC...........................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
..............TTACTCACTTGTTTAACATATCGCAAT......................................................................................................................	27	0	2	0.50	1	1	0	0	0	0
...............................................TGCTTACCAAAACCATTGAAGCCAC.......................................................................................	25	0	4	0.50	2	2	0	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCA.....................................................................................	24	0	4	0.50	2	2	0	0	0	0
.......AAATTAATTACTCACTTGTT....................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0
...........TAATTACTCACTTGTTTAACATATCGCAA.......................................................................................................................	29	0	2	0.50	1	1	0	0	0	0
....................................................................................TAGTTGTCCATGGCGATCTAGGCC...................................................	24	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCTA..................................................	25	2	3	0.33	1	0	1	0	0	0
...........TAATTACTTACTTGTTTAACATATCGCAC.......................................................................................................................	29	2	3	0.33	1	1	0	0	0	0
...............................................................................TTCAATAGTTGTCAATGGCGATCTAGGCC...................................................	29	0	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGCCT..................................................	25	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGCTTTT................................................	27	2	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGT....................................................	23	1	3	0.33	1	1	0	0	0	0
.....................................................................................CTTTGTCAATGGCGATCTAGGCC...................................................	23	2	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCT...................................................	24	1	3	0.33	1	0	0	1	0	0
.............................................................................TCTTCAATAGTTGTCAATG...............................................................	19	0	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCG...................................................	24	1	3	0.33	1	1	0	0	0	0
.................................................................................CAATAGTTGTCAATGGCGATCTAGGC....................................................	26	0	3	0.33	1	1	0	0	0	0
................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC...................................................	28	0	3	0.33	1	1	0	0	0	0
.............................................................................GCTTCAATAGTTGTCAATGGCGATC.........................................................	25	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGCC...................................................	24	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGACGATCTAGGCCT..................................................	25	1	3	0.33	1	0	1	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCA...................................................	24	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGCCC...................................................	24	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCTATGGCGATCTAGGCCT..................................................	25	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCCC..................................................	25	1	3	0.33	1	1	0	0	0	0
......................TTGTTTAACATATCGCAATTATGTT................................................................................................................	25	0	4	0.25	1	1	0	0	0	0
...........................................TGTTTGCTTACCAAAACCATTGAAG...........................................................................................	25	0	4	0.25	1	1	0	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCAGAAA.................................................................................	28	1	4	0.25	1	1	0	0	0	0
...........................TAACATATCGCAATTATGTTTGCT............................................................................................................	24	0	4	0.25	1	1	0	0	0	0
...............................................TGCTTACCGAAACCATTGAAGCCACC......................................................................................	26	1	4	0.25	1	1	0	0	0	0
......................TTGTTTAACATATCGCAATTATGT.................................................................................................................	24	0	4	0.25	1	1	0	0	0	0
...............................................TGCTTACCGAAACCATTGAAGCCACCA.....................................................................................	27	1	4	0.25	1	1	0	0	0	0
...................................................TACCAAAACCATTGAAGCCACCAG....................................................................................	24	0	4	0.25	1	1	0	0	0	0
...............................................TGCTTACCTAAACCATTGAAGCCACC......................................................................................	26	1	4	0.25	1	1	0	0	0	0
............................................................................................AAAGGCGATCGAGGCATTTT...............................................	20	3	15	0.07	1	0	0	0	0	1

ATATGTATTTAATTAATGAGTGAACAAATTGTATAGCGTTAATACAAACGAATGGTTTTGGTAACTTCGGTGGTCTTAGAAGTTATCAACAGTTACCGCTAGATCCGGAAAAATGCCAAAGGGCACATCTGAATCTAACATGATATAAAACGTTTAAAA **********************************...........(((((......(((.(((((((..........))))))).)))......)))))...(((((.......)))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	M021 embryo	V042 embryo
......................................................................TGGTCTTAGAAGTTATCAACAGTT.................................................................	24	0	3	2.00	6	3	1	2	0
.......................................................................GGTCTTAGAAGTTATCAACAGTT.................................................................	23	0	3	1.33	4	2	0	0	2
....................................................................GGTGGTCTTAGAAGTTATCAACAGTT.................................................................	26	0	3	1.00	3	2	1	0	0
...................................................................CGGTGGTCTTAGAAGTTATCAACAGTT.................................................................	27	0	3	0.67	2	2	0	0	0
...........................................................................................................GAAAAATGCTAGAGGGCACTT...............................	21	3	2	0.50	1	0	1	0	0
.....................................................................GTGGTCTTAGAAGTTATCAACAGTT.................................................................	25	0	3	0.33	1	1	0	0	0
.....................................................................ACGGTCTTAGAAGTTATCAACAGTT.................................................................	25	2	3	0.33	1	1	0	0	0
..............................................................................GAAGTTATCAACAGTTACCGCTAGAT.......................................................	26	0	3	0.33	1	1	0	0	0
......................................................GTTTTGGTAACTTCGGTGGTCT...................................................................................	22	0	4	0.25	1	1	0	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_144:3722-3880 -	dpe_159	TATACA---TAAATTAATTACTCACTT------GTTTAACATATCGCAATTATG-TTT-GCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGTGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT
dp5	Unknown_group_82:5768-5926 +		TATACA---TAAATTAATTACTCACTT------GTTTAACATATTGCAATTATG-TTT-GCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGGGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT
droWil2	scf2_1100000004961:743437-743623 +		TATTCA---TAAATAAATTAATGAGTT------TTATTACAAATCAAAGTAATGATTT-GCTTACCAAGCCCATTGAAGCCACCAGAAGACGGTAAAGATACAGGTGTTGCTCCTTCAATAACTGGCAATGGTGATCGAGGCC-TCTTACGAGTTTTTCGGGAAGGCTCCTGGCTCTGCACAGTATTTTCATTGTTTT
droMoj3	scaffold_4610:963-1154 +		TAAAAGACATTAATTAACTAATCACATAATATAAAATAATATATCGCAATGTTG-TTG-TCTTACCAGCACCAGTAAAGCCACCAGAAGATGGCAAAGCCACGCATGTTATACCTTTAATAGTTGGTAGTGGCGATCGTTGTC-TTTTCATGGATTTCCTAATAGGCTCAGA---CTGACCATTATCAGGCACATTCT
droAna3	scaffold_12984:68869-69058 -		TGTGTAAAAAAAACTAATTATTCACAA------AAGTAACACATAGCAATTAAA-TTTGGTTTACCAGCTCCATTGAATCCACCCGAATTTGGCGGAGATGCGCACGCCGAATCTTCACTGATTGGTAATGGTGATCGCGGTC-TTTTTTCAGTTCTCTGGGAAGTCTCAGCTTTTTGTGCATTGTTTTGGACATTTT
droBip1	scf7180000393438:11042-11226 +		CATATA---TAAATT-ATTAATCACTT------ATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT
droKik1	scf7180000301802:5791-5976 -		TGTTAA---TAAATTAATTAGTTATTT------GAGTACCATTATATAATTTAG-TTT-TCTTACCGGCACAATTGAAACCACCAGAAAAAGGCTCAGATGTACACACTGAATATTCCTTTATCGGCAGTGGTGAACGAGGTC-TCTTTGCAGGATTTTTGGTAATTTCCAGCTCCTGTACATTATCTTTGACATTAT
droFic1	scf7180000454130:5158-5342 +		CATATA---TAAATT-ATTAATCACTT------ATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCTTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT
droRho1	scf7180000772745:11480-11635 +		TA--------AAACTAATTATTCACTA------AAATAACACA--GCAATTAAA-TTTGGCTTACCAGCTCCATTGAACCCACCAGA------------------------ATCTTCACAGATTGGTAATGGTGATCTCGGCC-TTTTTGCAGTTTTCTGAAAAGTCTCACCTATCTGTGCATTGTTTTGGACATTTT
droBia1	scf7180000301583:3816-3995 +		TGTGTAAATAAAATCAATTACTCACAA------AAATAACACATAACAATTAAA-TTTAGCTTACCAGCTCCATTGAAACCATCAGAAATTGGAGGAGATGGGCACGCCGAATCTTCAACGATTGGTAATGGTGATCGCTGCC-TTTTCGGAGTTTTCTGGGAAGTCTTAGCTTCCTGTGCATTGTTT----------
droTak1	scf7180000414265:11913-12096 +		TGAGTAAATAAAACTACTTATTCACAA------AAATACCACATAGCAATTAAA-TTTAGCTTACCAGCTCCATTGAACCCACCAGAAGTTGGCGGAGAT------GCCGAATCTTCAATGATTGGTAATGGTGATCGCGGCC-TTTTTGGAGTTTTCTGGAAAGTCTCAGCTTCCTGTGCATTGTTTGGGACATTTT
droEug1	scf7180000409148:52058-52242 +		CATATA---TAAATT-ATTAATCACTT------ATATAAAAAATCTCAGTTATA-T-T-GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGACGTTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGTCACTATTTAAAAAATTTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TATACA---TAAATTAATTACTCACTT------GTTTAACATATCGCAATTATG-TTT-GCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGTGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-......................................................	24	3	28.33	85	6	73	5	0	0	1
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGC........................................................	23	3	14.00	42	0	40	2	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-T.....................................................	25	3	11.67	35	4	31	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TT....................................................	26	3	6.00	18	5	13	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGG.........................................................	22	3	5.33	16	0	14	1	0	0	1
................................................................................................................TCTTCAATAGTTGTCAATGGCGATC.............................................................	25	3	2.67	8	0	8	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-......................................................	23	3	2.67	8	0	8	0	0	0	0
.............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	27	4	1.75	7	1	6	0	0	0	0
..............TAATTACTCACTT------GTTTAACATATCGC.......................................................................................................................................................	27	2	1.50	3	0	3	0	0	0	0
..............TAATTACTCACTT------GTTTAACATATCGCA......................................................................................................................................................	28	2	1.00	2	0	2	0	0	0	0
.............................................................TTACCAAAACCATTGAAGCCACCAG................................................................................................................	25	4	1.00	4	0	4	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCACCA.................................................................................................................	27	4	1.00	4	0	4	0	0	0	0
....................................................................................................................................................TACGGTTTCCCGTGTAGACA..............................	20	1	1.00	1	0	1	0	0	0	0
.........TAAATTAATTACTCACTT------GTTTAACA.............................................................................................................................................................	26	2	1.00	2	0	2	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	26	4	0.75	3	0	3	0	0	0	0
............................................................................................................................GTCAATGGCGATCTAGGCC-......................................................	19	3	0.67	2	2	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGC........................................................	27	3	0.67	2	0	2	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGG.........................................................	21	3	0.67	2	0	2	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGC........................................................	22	3	0.67	2	0	2	0	0	0	0
.........TAAATTAATTACTCACTT------GTTTAACATA...........................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................TAGAT---TGTACTATATTTTGCAC.....	22	2	0.50	1	0	1	0	0	0	0
...............AATTACTCACTT------GTTTAACATATCG........................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
..............TAATTACTCACTT------GTTTAACATAT..........................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
..............TAATTACTCACTT------GTTTAACATATC.........................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
.................TTACTCACTT------GTTTAACATATCGCAAT....................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCAC...................................................................................................................	25	4	0.50	2	0	2	0	0	0	0
.............................................................TTACCAAAACCATTGAAGCCACCA.................................................................................................................	24	4	0.50	2	0	2	0	0	0	0
..........AAATTAATTACTCACTT------GTT..................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
..............TAATTACTCACTT------GTTTAACATATCGCAA.....................................................................................................................................................	29	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-A.....................................................	25	3	0.33	1	1	0	0	0	0	0
..................................................................................................................TTCAATAGTTGTCAATGGCGATCTAGGCC-......................................................	29	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGT........................................................	23	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-......................................................	24	3	0.33	1	0	0	1	0	0	0
................................................................................................................TCTTCAATAGTTGTCAATG...................................................................	19	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCG-......................................................	24	3	0.33	1	0	1	0	0	0	0
....................................................................................................................CAATAGTTGTCAATGGCGATCTAGGC........................................................	26	3	0.33	1	0	1	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC-......................................................	28	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCA-......................................................	24	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-C.....................................................	25	3	0.33	1	0	1	0	0	0	0
.........................TT------GTTTAACATATCGCAATTATG-TT.............................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
....................................................TG-TTT-GCTTACCAAAACCATTGAAG.......................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
.............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------AA.....................................................................................	28	4	0.25	1	0	1	0	0	0	0
....................................TAACATATCGCAATTATG-TTT-GCT........................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
.........................TT------GTTTAACATATCGCAATTATG-T..............................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAG................................................................................................................	24	4	0.25	1	0	1	0	0	0	0

dp5

TATACA---TAAATTAATTACTCACTT------GTTTAACATATTGCAATTATG-TTT-GCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGGGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGC........................................................	23	6	738.83	4433	0	4110	162	0	135	1	5	11	9	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-......................................................	24	6	513.17	3079	2	2609	369	3	53	0	4	25	14	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGG.........................................................	22	6	287.67	1726	0	1616	12	0	44	1	10	22	21	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-T.....................................................	25	6	219.50	1317	3	1090	183	0	14	0	6	14	7	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TT....................................................	26	6	71.83	431	3	400	23	0	1	0	1	2	1	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGC........................................................	22	6	64.00	384	0	383	0	0	1	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-......................................................	23	6	43.00	258	0	256	2	0	0	0	0	0	0	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---......................	25	5	41.40	207	0	150	8	0	4	0	4	13	28	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTT...................................................	27	6	30.33	182	0	173	6	0	2	0	0	1	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAG..........................................................	21	6	25.00	150	0	131	1	0	4	0	2	5	7	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-......................................................	24	6	24.67	148	1	130	11	0	3	0	0	0	3	0
........................................................................................................................AGTTGTCAATGGCGATCTAGG.........................................................	21	6	24.67	148	0	148	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-T.....................................................	24	6	17.00	102	0	101	1	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCA-......................................................	24	6	16.17	97	0	92	1	0	3	0	1	0	0	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGA..........................	24	5	13.00	65	0	42	0	0	2	0	0	10	11	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-C.....................................................	25	6	9.00	54	0	2	49	0	1	0	0	0	2	0
................................................................................................................TCTTCAATAGTTGTCAATGGCGATC.............................................................	25	6	8.50	51	0	44	6	0	0	0	0	1	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATC.............................................................	22	6	8.00	48	0	42	5	0	1	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	26	5	7.60	38	0	33	4	0	0	0	0	1	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-TT....................................................	25	6	7.33	44	0	44	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGA........................................................	23	6	7.17	43	0	40	0	0	3	0	0	0	0	0
.........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGGGT...................................	25	6	6.67	40	0	19	11	0	8	0	2	0	0	0
...................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAT---......................	26	5	6.40	32	0	14	2	0	0	0	0	12	4	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGT........................................................	23	6	6.33	38	0	36	2	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCA-A.....................................................	25	6	5.67	34	0	34	0	0	0	0	0	0	0	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---TG....................	27	5	5.40	27	0	26	1	0	0	0	0	0	0	0
......................................................................................................................ATAGTTGTCAATGGCGATCTAGGC........................................................	24	6	5.33	32	0	31	1	0	0	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGC........................................................	27	6	4.83	29	0	24	3	0	0	0	0	1	1	0
.........................................................................................................................GTTGTCAATGGCGATCTAGGC........................................................	21	6	4.33	26	0	26	0	0	0	0	0	0	0	0
..........................................................................TGAAGCCACCAGA------------------------ATCTTCAATAGTTG.........................................................................	27	5	4.20	21	0	21	0	0	0	0	0	0	0	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAA---......................	25	5	4.00	20	0	19	0	0	0	0	0	0	1	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-A.....................................................	25	6	4.00	24	0	20	3	0	1	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTAGG.........................................................	26	6	3.83	23	0	15	1	0	0	0	1	0	6	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAG...........................	23	5	3.40	17	0	17	0	0	0	0	0	0	0	0
...................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGA..........................	25	5	3.40	17	0	5	0	0	0	0	0	4	8	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---A.....................	26	5	3.20	16	0	11	1	0	2	0	0	2	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TA....................................................	26	6	3.17	19	0	18	1	0	0	0	0	0	0	0
.........................................................................................................................GTTGTCAATGGCGATCTAGGCC-......................................................	22	6	3.00	18	0	18	0	0	0	0	0	0	0	0
......................................................................................................................ATAGTTGTCAATGGCGATCTAGG.........................................................	23	6	2.83	17	0	17	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTTT..................................................	28	6	2.83	17	0	16	0	0	0	0	0	1	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCACCA.................................................................................................................	27	4	2.75	11	0	11	0	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCACC..................................................................................................................	26	4	2.75	11	0	8	1	0	0	0	0	0	2	0
......................................................................................................................ATAGTTGTCAATGGCGATCTAGGCC-......................................................	25	6	2.67	16	0	13	3	0	0	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	28	5	2.60	13	0	11	1	0	1	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTA...........................................................	20	6	2.33	14	0	14	0	0	0	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	25	5	2.20	11	0	10	1	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCA-......................................................	23	6	2.00	12	0	12	0	0	0	0	0	0	0	0
..................................................TATG-TTT-GCTTACCAAAACCATTGAAG.......................................................................................................................	27	4	2.00	8	0	7	1	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCT............................................................	19	6	2.00	12	0	12	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-TTT...................................................	26	6	1.83	11	0	11	0	0	0	0	0	0	0	0
......................................................................................................................ATAGTTGTCAATGGCGATCTAGGCC-T.....................................................	26	6	1.83	11	0	9	1	0	1	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGAA-......................................................	24	6	1.83	11	0	10	1	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCAC...................................................................................................................	25	4	1.75	7	0	7	0	0	0	0	0	0	0	0
....................................................TG-TTT-GCTTACCAAAACCATTGAAGCC.....................................................................................................................	27	4	1.75	7	0	4	3	0	0	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTAG..........................................................	25	6	1.67	10	0	7	0	0	0	0	0	2	1	0
.....................................................................................................................................................ACGGTTTCCCGGGTAGACTTAGAT---......................	24	5	1.60	8	0	8	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-A.....................................................	25	6	1.50	9	0	9	0	0	0	0	0	0	0	0
.............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	27	5	1.40	7	0	6	1	0	0	0	0	0	0	0
...................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAG...........................	24	5	1.40	7	0	6	0	0	0	0	0	0	1	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TC....................................................	26	6	1.33	8	0	5	3	0	0	0	0	0	0	0
....................................................................................................................CAATAGTTGTCAATGGCGATCTAGG.........................................................	25	6	1.33	8	0	6	0	0	0	0	0	1	1	0
.........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGGG....................................	24	6	1.33	8	0	7	1	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGA.........................................................	22	6	1.33	8	0	7	0	0	0	0	1	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC-......................................................	28	6	1.33	8	0	7	1	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCA....................................................................................................................	24	4	1.25	5	0	3	0	0	0	0	0	2	0	0
....................................................TG-TTT-GCTTACCAAAACCATTGAAGC......................................................................................................................	26	4	1.25	5	0	3	2	0	0	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAGA------------------------AT.....................................................................................	27	5	1.20	6	0	6	0	0	0	0	0	0	0	0
.............................................................TTACCAAAACCATTGAAGCCACCAG................................................................................................................	25	5	1.20	6	0	4	2	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCT-......................................................	23	6	1.17	7	0	6	1	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAG..........................................................	20	6	1.17	7	0	7	0	0	0	0	0	0	0	0
.................................................................................................................................TGGCGATCTAGGCC-TTTTTACGGTT...........................................	25	6	1.17	7	0	6	1	0	0	0	0	0	0	0
.........................................................................................................................GTTGTCAATGGCGATCTAGGCC-T.....................................................	23	6	1.17	7	0	7	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTA...................................................	27	6	1.17	7	0	4	0	0	0	0	0	3	0	0
.................................................................................................................CTTCAATAGTTGTCAATGGCGATC.............................................................	24	6	1.00	6	0	5	1	0	0	0	0	0	0	0
................................................................................................................................................TTTTTACGGTTTCCCGGGTAGACT..............................	24	5	1.00	5	0	4	1	0	0	0	0	0	0	0
.........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGG.....................................	23	6	1.00	6	0	6	0	0	0	0	0	0	0	0
.........TAAATTAATTACTCACTT------GTTTAACATAT..........................................................................................................................................................	29	3	1.00	3	0	0	0	0	0	0	0	3	0	0
...................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAA---......................	26	5	1.00	5	0	4	0	0	0	0	0	0	1	0
...................................................................AAACCATTGAAGCCACCAGA------------------------ATCT...................................................................................	24	5	1.00	5	0	2	3	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGAA........................................................	23	6	1.00	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................................TTGTCAATGGCGATCTAGGCC-T.....................................................	22	6	1.00	6	0	6	0	0	0	0	0	0	0	0
.............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	26	5	1.00	5	0	4	0	0	0	0	0	0	1	0
.........................................................................................................................GTTGTCAATGGCGATCTAGG.........................................................	20	6	1.00	6	0	6	0	0	0	0	0	0	0	0
........................................................TT-GCTTACCAAAACCATTGAAGCCAC...................................................................................................................	26	4	1.00	4	0	2	2	0	0	0	0	0	0	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---T.....................	26	5	1.00	5	0	4	1	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGC......................................................................................................................	22	4	1.00	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................TTCAATAGTTGTCAATGGCGATC.............................................................	23	6	1.00	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................................TTGTCAATGGCGATCTAGGC........................................................	20	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATC.............................................................	18	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGG........................................................	23	6	0.83	5	0	1	0	0	4	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGAT..............................................................	21	6	0.83	5	0	4	1	0	0	0	0	0	0	0
...........................................................................................................................TGTCAATGGCGATCTAGGCC-......................................................	20	6	0.83	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................TCTTCAATAGTTGTCAATGGCGA...............................................................	23	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGT.........................................................	22	6	0.83	5	0	4	1	0	0	0	0	0	0	0
..........................................................................TGAAGCCACCAGA------------------------ATCTTCAATAGT...........................................................................	25	5	0.80	4	0	2	0	0	2	0	0	0	0	0
...........................................................................GAAGCCACCAGA------------------------ATCTTCAATAGTTG.........................................................................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0
..................................................................AAAACCATTGAAGCCACCAGA------------------------ATCT...................................................................................	25	5	0.80	4	0	3	1	0	0	0	0	0	0	0
....................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAA---A.....................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAA---A.....................	27	5	0.80	4	0	4	0	0	0	0	0	0	0	0
..................................................TATG-TTT-GCTTACCAAAACCATTGAA........................................................................................................................	26	4	0.75	3	0	3	0	0	0	0	0	0	0	0
....................................................TG-TTT-GCTTACCAAAACCATTGAAG.......................................................................................................................	25	4	0.75	3	0	3	0	0	0	0	0	0	0	0
........................................................TT-GCTTACCAAAACCATTGAAGCCA....................................................................................................................	25	4	0.75	3	0	3	0	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCC.....................................................................................................................	23	4	0.75	3	0	2	1	0	0	0	0	0	0	0
.........TAAATTAATTACTCACTT------GTTTAACATACA.........................................................................................................................................................	30	3	0.67	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCT............................................................	23	6	0.67	4	0	4	0	0	0	0	0	0	0	0
.........TAAATTAATTACTCACTT------GTTTAACA.............................................................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................TCAATAGTTGTCAATGGCG................................................................	19	6	0.67	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................ATAGTTGTCAATGGCGATCTAGGCC-TT....................................................	27	6	0.67	4	0	3	1	0	0	0	0	0	0	0
..........................................................................................................................TTGTCAATGGCGATCTAGGCC-......................................................	21	6	0.67	4	0	3	1	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGTA-......................................................	24	6	0.67	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................TTCAATAGTTGTCAATGGCGA...............................................................	21	6	0.67	4	0	3	1	0	0	0	0	0	0	0
.........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGGGC...................................	25	6	0.67	4	0	0	3	0	1	0	0	0	0	0
...........................................................................................................................TGTCAATGGCGATCTAGGCC-T.....................................................	21	6	0.67	4	0	4	0	0	0	0	0	0	0	0
................................................................CCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	23	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................ACGGTTTCCCGGGTAGACTTAGAA---......................	24	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...............................................................ACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	25	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.........................................................................TTGAAGCCACCAGA------------------------ATCTTCAATAGT...........................................................................	26	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...................................................................AAACCATTGAAGCCACCAGA------------------------ATCTT..................................................................................	25	5	0.60	3	0	3	0	0	0	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCA.................................................................................................................	23	5	0.60	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTACGGTTTCCCGGGTAGACTTAGAT---......................	27	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...................................................................AAACCATTGAAGCCACCAGA------------------------ATCTTC.................................................................................	26	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTTACGGTTTCCCGGGTAGACTT.............................	24	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.................................................TTATG-TTT-GCTTACCAAAACCATT...........................................................................................................................	24	4	0.50	2	0	1	1	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAA..........................................................	21	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..................................................TATG-TTT-GCTTACCAAAACCATTG..........................................................................................................................	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTA...........................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................CAATAGTTGTCAATGGCGATC.............................................................	21	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..................................................TATG-TTT-GCTTACCAAAACCATTGAAGCC.....................................................................................................................	29	4	0.50	2	0	0	2	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCACCAG................................................................................................................	28	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.................................................TTATG-TTT-GCTTACCAAAACCATTG..........................................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................GTTGTCAATGGCGATCTAGGCC-TT....................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCA-A.....................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................TTGTCAATGGCGATCTAGG.........................................................	19	6	0.50	3	0	3	0	0	0	0	0	0	0	0
........................................................TT-GCTTACCAAAACCATTGAAGCC.....................................................................................................................	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0
........................CTT------GTTTAACATATTGCAATTATG-T..............................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................TGTCAATGGCGATCTAGG.........................................................	18	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-G.....................................................	25	6	0.50	3	0	0	3	0	0	0	0	0	0	0
...........................................................GCTTACCAAAACCATTGAAGCCACCA.................................................................................................................	26	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	29	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TAA...................................................	27	6	0.50	3	0	2	0	0	0	0	0	1	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-C.....................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................CAATGGCGATCTAGGCC-T.....................................................	18	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-AC....................................................	26	6	0.50	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGA........................................................	22	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.........................TT------GTTTAACATATTGCAATTATG-TT.............................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC-T.....................................................	29	6	0.50	3	0	2	1	0	0	0	0	0	0	0
..................................................................AAAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTTACGGTTTCCCGGGTAGACT..............................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAT---A.....................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
............................................................CTTACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..................................................................AAAACCATTGAAGCCACCAGA------------------------AT.....................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAGA------------------------AA.....................................................................................	27	5	0.40	2	0	1	1	0	0	0	0	0	0	0
...................................................................AAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTACGGTTTCCCGGGTAGACTTAGA..........................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..........................................................................TGAAGCCACCAGA------------------------ATCTTC.................................................................................	19	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAGA------------------------ATCT...................................................................................	29	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................ACGGTTTCCCGGGTAGACTTAGAT---TG....................	26	5	0.40	2	0	1	0	0	0	0	0	0	1	0
...............................................................ACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	24	5	0.40	2	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................CC-TTTTTACGGTTTCCCGGGTAGACT..............................	26	5	0.40	2	0	0	1	0	1	0	0	0	0	0
........................................................................................................................................................GTTTCCCGGGTAGACTTAGAT---......................	21	5	0.40	2	0	1	0	0	1	0	0	0	0	0
...........................................................................GAAGCCACCAGA------------------------ATCTTCAA...............................................................................	20	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..........................................................................TGAAGCCACCAGA------------------------ATCTTCA................................................................................	20	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.........................................................................TTGAAGCCACCAGA------------------------ATCTTCAA...............................................................................	22	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..........................................................................TGAAGCCACCAGA------------------------ATCTTCAATAGTT..........................................................................	26	5	0.40	2	0	1	0	0	0	0	0	0	1	0
..............................................................................................................................................C-TTTTTACGGTTTCCCGGGTAGACT..............................	25	5	0.40	2	0	1	1	0	0	0	0	0	0	0
...................................................................AAACCATTGAAGCCACCAGA------------------------AT.....................................................................................	22	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTACGGTTTCCCGGGTAGACTTAG...........................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...............................................................ACCAAAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..........................................................................TGAAGCCACCAGA------------------------ATCTT..................................................................................	18	5	0.40	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................TTTTTACGGTTTCCCGGGTAGA................................	22	5	0.40	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................TTTTTACGGTTTCCCGGGTAGAC...............................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..............................................................TACCAAAACCATTGAAGCCACCAG................................................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...............................................................ACCAAAACCATTGAAGCCACCAGA------------------------AA.....................................................................................	26	5	0.40	2	0	1	0	0	0	0	0	0	1	0
...............................................................................................................ATCTTCAATAGTTGTCAATGGCGATC.............................................................	26	6	0.33	2	0	1	1	0	0	0	0	0	0	0
.........TAAATTAATTACTCACTT------GTT..................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-A.....................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGT.........................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................CAATAGTTGTCAATGGCGATCTA...........................................................	23	6	0.33	2	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................TGTCAATGGCGATCTAGGCC-TT....................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGTT-......................................................	24	6	0.33	2	0	1	1	0	0	0	0	0	0	0
....................................................................................................................CAATAGTTGTCAATGGCGATCTAG..........................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................GTCAATGGCGATCTAGGCC-......................................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................GTTGTCAATGGCGATCTAGGCC-TTT...................................................	25	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGT........................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................CTTCAATAGTTGTCAATGGCG................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGAA-......................................................	23	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........TAAATTAATTACTCACTT------GTTA.................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........AAATTAATTACTCACTT------GTTTAACA.............................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TG....................................................	26	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................TTGTCAATGGCGATCTAGGCC-TTT...................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........TAAATTAATTACTCACTT------GTTC.................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TCAATAGTTGTCAATGGCGA...............................................................	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................GTCAATGGCGATCTAGGC........................................................	18	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGC.........................................................	22	6	0.33	2	0	0	1	0	1	0	0	0	0	0
............................................................................................................................GTCAATGGCGATCTAGGCC-T.....................................................	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................TCCCGGGTAGACTTAGAT---TGTACTA...............	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TCTAGGCC-TTTTTACGGTTTCCCGGG....................................	26	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTG...................................................	27	6	0.33	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................CAATAGTTGTCAATGGCGATCA............................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................TCAATGGCGATCTAGGCC-TT....................................................	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................TGTCAATGGCGATCTAGGC........................................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................TCTTCAATAGTTGTCAATGGCG................................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-TC....................................................	25	6	0.33	2	0	1	1	0	0	0	0	0	0	0
.....................................................G-TTT-GCTTACCAAAACCATTGAAGC......................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................................TATG-TTT-GCTTACCAAAACCATT...........................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.................................................TTATG-TTT-GCTTACCAAAACCATTGA.........................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0
..................................................TATG-TTT-GCTTACCAAAACCATTGAAA.......................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................TT-GCTTACCAAAACCATTGAA........................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................T-GCTTACCAAAACCATTGAAG.......................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................TT-GCTTACCAAAACCATTGAAGCCACC..................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................TTT-GCTTACCAAAACCATTGAAGC......................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................TTT-GCTTACCAAAACCATTGAAGCC.....................................................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0
..................................................TATG-TTT-GCTTACCAAAACCATTGAAGC......................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................TTT-GCTTACCAAAACCATTGAAGCCAC...................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................................TATG-TTT-GCTTACCAAAACCA.............................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.................................................TTATG-TTT-GCTTACCAAAACCAT............................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.................................................TTATG-TTT-GCTTACCAAAACCATTGAA........................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0

droWil2

TATTCA---TAAATAAATTAATGAGTT------TTATTACAAATCAAAGTAATGATTT-GCTTACCAAGCCCATTGAAGCCACCAGAAGACGGTAAAGATACAGGTGTTGCTCCTTCAATAACTGGCAATGGTGATCGAGGCC-TCTTACGAGTTTTTCGGGAAGGCTCCTGGCTCTGCACAGTATTTTCATTGTTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTT...........................................	25	20	2.35	47	0	3	0	44	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTTCAA...............................................................................	26	20	1.70	34	0	12	0	22	0
.................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTTTT.........................................	27	20	1.00	20	0	2	0	17	1
.......................................................................CATTGAAGCCACCAGAAGACGG.........................................................................................................	22	1	1.00	1	0	1	0	0	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-......................................................	24	20	0.70	14	1	11	0	2	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTTCA................................................................................	25	20	0.65	13	0	4	0	9	0
.................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGT............................................	24	20	0.55	11	0	2	0	9	0
........................................................................................GACGGTAAAGATACAGGTGTTGCTC.....................................................................................	25	20	0.50	10	0	0	0	10	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-T.....................................................	25	20	0.45	9	2	5	1	1	0
.................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTTT..........................................	26	20	0.40	8	0	7	1	0	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGC........................................................	23	20	0.40	8	0	1	0	7	0
...................................................................................................................TCAATAACTGGCAATGGTGATCGAGG.........................................................	26	20	0.35	7	0	7	0	0	0
.................................................TAATGATTT-GCTTACCAAGCCCAT............................................................................................................................	24	20	0.35	7	0	1	0	6	0
......................................................................................AAGACGGTAAAGATACAGGTGTTGC.......................................................................................	25	20	0.30	6	0	1	0	5	0
............................................................................................................TGCTCCTTCAATAACTGGCAATGGTG................................................................	26	20	0.30	6	0	6	0	0	0
...............................................................................................................TCCTTCAATAACTGGCAATGGTGATCG............................................................	27	20	0.25	5	0	2	0	3	0
............................................................................................................TGCTCCTTCAATAACTGGCAATGGTGA...............................................................	27	20	0.25	5	0	5	0	0	0
.....................................................................................GAAGACGGTAAAGATACAGGTGTTGC.......................................................................................	26	20	0.20	4	0	1	0	3	0
..............................................................................GCCACCAGAAGACGGTAAAGATACAGG.............................................................................................	27	15	0.20	3	0	3	0	0	0
.......................................................................................AGACGGTAAAGATACAGGTGTTGC.......................................................................................	24	20	0.20	4	0	0	0	4	0
........................................................................................GACGGTAAAGATACAGGTGTTGCTCC....................................................................................	26	20	0.20	4	0	1	0	3	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TCT...................................................	27	20	0.20	4	0	3	1	0	0
...................................................................................................................TCAATAACTGGCAATGGTGATCGAG..........................................................	25	20	0.15	3	0	2	0	1	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTTC.................................................................................	24	20	0.15	3	0	1	0	2	0
..............................................................................................................................CAATGGTGATCGAGGCC-TCTTACGA..............................................	25	20	0.15	3	0	0	0	3	0
....................................................................................................................CAATAACTGGCAATGGTGATCGAGG.........................................................	25	20	0.15	3	0	1	0	2	0
.......................................................................................................................................TCGAGGCC-TCTTACGAGTTTTTCGGG....................................	26	20	0.15	3	0	1	0	2	0
....................................................................................................................................TGATCGAGGCC-TCTTACGAGTTTTTCG......................................	27	20	0.15	3	0	2	0	1	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TC....................................................	26	20	0.15	3	0	2	0	1	0
..........................................................................................................................................................................TGGCTCTGCACAGTATTTTCATTGTTT.	27	19	0.11	2	0	2	0	0	0
...............................................................................................................TCCTTCAATAACTGGCAATGGTGA...............................................................	24	20	0.10	2	0	2	0	0	0
...............................................................................................................TCCTTCAATAACTGGCAATGGTGATCGA...........................................................	28	20	0.10	2	0	2	0	0	0
........................................................................................................................AACTGGCAATGGTGATCGAGGCC-......................................................	23	20	0.10	2	0	1	0	1	0
.............................................................................................................GCTCCTTCAATAACTGGCAATGGTGA...............................................................	26	20	0.10	2	0	2	0	0	0
.......................................................................................................................................TCGAGGCC-TCTTACGAGTTTTTCGGGA...................................	27	20	0.10	2	0	2	0	0	0
........................................................................................GACGGTAAAGATACAGGTGTTGCTCCT...................................................................................	27	20	0.10	2	0	0	0	2	0
..............................................................................................................................CAATGGTGATCGAGGCC-TCTTACGAG.............................................	26	20	0.10	2	0	0	0	2	0
....................................................................................................................CAATAACTGGCAATGGTGATCGAGGCC-......................................................	27	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................TGGCTCTGCACAGTATTTTCATTGTT..	26	19	0.05	1	0	1	0	0	0
..............................................................................................AAAGATACAGGTGTTGCTCCT...................................................................................	21	20	0.05	1	0	0	0	0	1
...................................................................................................TACAGGTGTTGCTCCTTCAATAACT..........................................................................	25	20	0.05	1	0	1	0	0	0
............................................................................................................................GGCAATGGTGATCGAGGCC-TCTTACGA..............................................	27	20	0.05	1	0	1	0	0	0
..................................................................................................................TTCAATAACTGGCAATGGTGATC.............................................................	23	20	0.05	1	0	0	0	1	0
...........................................................................................................................TGGCAATGGTGATCGAGGCC-TCTTACGT..............................................	28	20	0.05	1	0	1	0	0	0
....................................................................................................................................TGATCGAGGCC-TCTTACGAGTTTTT........................................	25	20	0.05	1	0	1	0	0	0
.................................................................................ACCAGAAGACGGTAAAGATACAGGTG...........................................................................................	26	20	0.05	1	0	0	0	1	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTT..................................................................................	23	20	0.05	1	0	0	0	1	0
..................................................................................................................................GGTGATCGAGGCC-TCTTACGAGTTT..........................................	25	20	0.05	1	0	0	0	1	0
...................................................................................CAGAAGACGGTAAAGATACAGGTGT..........................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTTCAAT..............................................................................	27	20	0.05	1	0	1	0	0	0
..............................................................................................AAAGATACAGGTGTTGCTCCTTC.................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................ACTGGCAATGGTGATCGAGGCC-TCT...................................................	25	20	0.05	1	0	1	0	0	0
..................................................................................................................TTCAATAACTGGCAATGGTGATCGAGGC........................................................	28	20	0.05	1	0	1	0	0	0
............................................................................................GTAAAGATACAGGTGTTGCTCCTT..................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TT....................................................	26	20	0.05	1	0	1	0	0	0
................................................................................CACCAGAAGACGGTAAAGATACAGGTG...........................................................................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................................TGGCAATGGTGATCGAGGCC-......................................................	20	20	0.05	1	0	1	0	0	0
................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAGTTTT.........................................	28	20	0.05	1	0	1	0	0	0
.................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTTTA.........................................	27	20	0.05	1	0	1	0	0	0
...........................................TCAAAGTAATGATTT-GCTTACCAAGCCC..............................................................................................................................	28	20	0.05	1	0	1	0	0	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGG.........................................................	22	20	0.05	1	0	0	0	1	0
................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAGT............................................	25	20	0.05	1	0	0	0	1	0
..............................................................................................................................................C-TCTTACGAGTTTTTCGGGAAGGCTC.............................	26	20	0.05	1	0	1	0	0	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTTT.................................................................................	24	20	0.05	1	0	0	0	1	0
..................................................AATGATTT-GCTTACCAAGCCCATT...........................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................AGACGGTAAAGATACAGGTGTTGCTC.....................................................................................	26	20	0.05	1	0	0	0	1	0
..............................................AAGTAATGATTT-GCTTACCAAGCCCAT............................................................................................................................	27	20	0.05	1	0	0	0	1	0
...............................................................................................................................AATGGTGATCGAGGCC-TCTTACGAGT............................................	26	20	0.05	1	0	0	0	1	0
....................................................................................................................CAATAACTGGCAATGGTGATCGAG..........................................................	24	20	0.05	1	0	1	0	0	0
.....................................................................................................................AATAACTGGCAATGGTGATCGAGGC........................................................	25	20	0.05	1	0	0	0	0	1
................................................................................................AGATACAGGTGTTGCTCCTTCA................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................AATGGTGATCGAGGCC-TCTTACGAG.............................................	25	20	0.05	1	0	0	0	1	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TCA...................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................................................................TCGAGGCC-TCTTACGAGTTTTTCG......................................	24	20	0.05	1	0	0	0	1	0
.................................................................................ACCAGAAGACGGTAAAGATACAGGTGT..........................................................................................	27	20	0.05	1	0	0	0	1	0
.........................................................................................................TGTTGCTCCTTCAATAACTGGCAATGG..................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................TGGCAATGGTGATCGAGGCC-TCTTT.................................................	25	20	0.05	1	0	1	0	0	0
...............................................................................................AAGATACAGGTGTTGCTCCTTCAATTC............................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................TAAAGATACAGGTGTTGC.......................................................................................	18	20	0.05	1	0	0	0	1	0
..................................................................................................................TTCAATAACTGGCAATGGTGATCGAG..........................................................	26	20	0.05	1	0	1	0	0	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TCTT..................................................	28	20	0.05	1	0	1	0	0	0
................................................................................................................................................TCTTACGAGTTTTTCGGG....................................	18	20	0.05	1	0	1	0	0	0
.......................................................................................AGACGGTAAAGATACAGGTGTTGCTCT....................................................................................	27	20	0.05	1	0	0	0	1	0
..................................................................................................................TTCAATAACTGGCAATGGTGATCGAGG.........................................................	27	20	0.05	1	0	1	0	0	0
................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAG.............................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................TCCTTCAATAACTGGCAATGGTGATC.............................................................	26	20	0.05	1	0	0	0	1	0
...................................................................................................................TCAATAACTGGCAATGGTGATCGAGGC........................................................	27	20	0.05	1	0	0	0	1	0
.......................................................................................................................TAACTGGCAATGGTGATCGAG..........................................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTTCAATT.............................................................................	28	20	0.05	1	0	0	0	1	0
.............................................................................................TAAAGATACAGGTGTTGCTCCTTCAATA.............................................................................	28	20	0.05	1	0	1	0	0	0
.......................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TTA...................................................	27	20	0.05	1	0	0	0	1	0
................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAGTTT..........................................	27	20	0.05	1	0	0	0	1	0
.............................................................................................................................GCAATGGTGATCGAGGCC-TCTTACGA..............................................	26	20	0.05	1	0	0	0	1	0
....................................................................................................................................TGATCGAGGCC-TCTTACGAGTT...........................................	22	20	0.05	1	0	0	0	1	0

droMoj3

TAAAAGACATTAATTAACTAATCACATAATATAAAATAATATATCGCAATGTTG-TTG-TCTTACCAGCACCAGTAAAGCCACCAGAAGATGGCAAAGCCACGCATGTTATACCTTTAATAGTTGGTAGTGGCGATCGTTGTC-TTTTCATGGATTTCCTAATAGGCTCAGA---CTGACCATTATCAGGCACATTCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGCACA....	29	7	4.86	34	31	0	0	0	3	0
..................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGC.......	26	8	3.38	27	23	0	0	0	4	0
............................................................................................................TATACCTTTAATAGTTGGTAGTGGC.................................................................	25	8	3.25	26	21	1	0	0	4	0
..................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGCAC.....	28	7	2.71	19	11	0	0	0	8	0
..................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGCA......	27	7	1.71	12	12	0	0	0	0	0
............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGA...............................................................	27	8	1.50	12	9	0	0	0	2	1
.......................................................TTG-TCTTACCAGCACCAGTAAAGCC.....................................................................................................................	25	8	1.50	12	7	0	0	0	5	0
............................................................................................................TATACCTTTAATAGTTGGTAGTGGCG................................................................	26	8	1.38	11	11	0	0	0	0	0
..............................................................TACCAGCACCAGTAAAGCCACCAGAAG.............................................................................................................	27	8	0.88	7	1	0	0	0	6	0
.......................................................................................................................................................................TCAGA---CTGACCATTATCAGGCACA....	24	7	0.86	6	6	0	0	0	0	0
............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGATC.............................................................	29	8	0.75	6	2	0	0	0	4	0
.......................................................TTG-TCTTACCAGCACCAGTAAAGCCACC..................................................................................................................	28	8	0.75	6	3	0	0	0	3	0
.........................................TATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	26	8	0.63	5	3	0	0	0	2	0
.......................................................................................................................................................................TCAGA---CTGACCATTATCAGGCACATTC.	27	7	0.57	4	4	0	0	0	0	0
..................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGG........	25	8	0.50	4	4	0	0	0	0	0
...........................................TCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	24	8	0.50	4	2	0	0	0	2	0
............................................................................................................TATACCTTTAATAGTTGGTAGTGG..................................................................	24	8	0.50	4	3	0	0	0	1	0
..............................................................TACCAGCACCAGTAAAGCCACCAGAAGAT...........................................................................................................	29	8	0.38	3	1	0	0	0	2	0
.......................................................TTG-TCTTACCAGCACCAGTAAAGCCA....................................................................................................................	26	8	0.38	3	2	0	0	0	1	0
........................................................TG-TCTTACCAGCACCAGTAAAGCCAC...................................................................................................................	26	8	0.38	3	1	0	0	0	2	0
........................................ATATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	27	8	0.38	3	3	0	0	0	0	0
..............................................................TACCAGCACCAGTAAAGCCACCAGAA..............................................................................................................	26	8	0.38	3	1	1	0	0	1	0
.......................................................................................................................................................................TCAGA---CTGACCATTATCAGGCACATT..	26	7	0.29	2	1	0	0	0	1	0
...................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGCACA....	28	7	0.29	2	2	0	0	0	0	0
.............................................................TTACCAGCACCAGTAAAGCCACCA.................................................................................................................	24	8	0.25	2	2	0	0	0	0	0
.......................................................TTG-TCTTACCAGCACCAGTAAAG.......................................................................................................................	23	8	0.25	2	2	0	0	0	0	0
.............................................................................................................ATACCTTTAATAGTTGGTAGTGG..................................................................	23	8	0.25	2	2	0	0	0	0	0
.....................TCACATAATATAAAATAATATATCGCA......................................................................................................................................................	27	8	0.25	2	2	0	0	0	0	0
.......................................................TTG-TCTTACCAGCACCAGTAAAGCCAC...................................................................................................................	27	8	0.25	2	2	0	0	0	0	0
...........................................TCGCAATGTTG-TTG-TCTTACCAGCACC..............................................................................................................................	27	8	0.25	2	0	0	0	0	2	0
..........................................................................................................................................................................GA---CTGACCATTATCAGGCAC.....	20	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGCA......	26	7	0.14	1	1	0	0	0	0	0
...................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGCAC.....	27	7	0.14	1	1	0	0	0	0	0
.......................................................................................................................................................................TCAGA---CTGACCATTATCAGGCAC.....	23	7	0.14	1	1	0	0	0	0	0
........................................................................................................................................................................CAGA---CTGACCATTATCAGGCACATT..	25	7	0.14	1	1	0	0	0	0	0
....................................................................................................................................................................GGCTCAGA---CTGACCATTATCAGGCA......	25	7	0.14	1	1	0	0	0	0	0
.................................................TGTTG-TTG-TCTTACCAGCA................................................................................................................................	19	8	0.13	1	1	0	0	0	0	0
.............................TATAAAATAATATATCGCAATG...................................................................................................................................................	22	8	0.13	1	1	0	0	0	0	0
..........................................ATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
.............................................................TTACCAGCACCAGTAAAGCCACCAGA...............................................................................................................	26	8	0.13	1	0	0	0	0	1	0
..............TAACTAATCACATAATATAAAATAAT..............................................................................................................................................................	26	8	0.13	1	1	0	0	0	0	0
...................................................TTG-TTG-TCTTACCAGCACCAGTAAAGC......................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
..................................................................................................................................................................TAGGCTCAGA---CTGACCATTATC...........	22	8	0.13	1	1	0	0	0	0	0
..........................................................................................................................................................TTTCCTAATAGGCTCAGA---CTGACCATTA.............	28	8	0.13	1	1	0	0	0	0	0
...................................................................................................................TTAATAGTTGGTAGTGGCGATCG............................................................	23	8	0.13	1	1	0	0	0	0	0
....................................................TG-TTG-TCTTACCAGCACCAGTAA.........................................................................................................................	23	8	0.13	1	1	0	0	0	0	0
............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGT...............................................................	27	8	0.13	1	1	0	0	0	0	0
..............................................................TACCAGCACCAGTAAAGCCACCAGAAGA............................................................................................................	28	8	0.13	1	0	0	0	0	1	0
...........................................................................................................................................................TTCCTAATAGGCTCAGA---CTGACCATTATC...........	29	8	0.13	1	1	0	0	0	0	0
....................................................TG-TTG-TCTTACCAGCACCAGTAAAG.......................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGAT..............................................................	28	8	0.13	1	0	0	0	0	1	0
...................................................................................................................TTAATAGTTGGTAGTGGCGATCGTT..........................................................	25	8	0.13	1	1	0	0	0	0	0
...................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGG........	24	8	0.13	1	1	0	0	0	0	0
...................................................TTG-TTG-TCTTACCAGCAC...............................................................................................................................	18	8	0.13	1	0	0	0	0	1	0
............................................................................................................TATACCTTTAATAGTTGGTAGTG...................................................................	23	8	0.13	1	1	0	0	0	0	0
..............................................................TACCAGCACCAGTAAAGCCACCAGA...............................................................................................................	25	8	0.13	1	0	0	0	0	1	0
...................................................TTG-TTG-TCTTACCAGCACCAGTAAAGCCA....................................................................................................................	29	8	0.13	1	1	0	0	0	0	0
.............................................................................................................ATACCTTTAATAGTTGGTAGTGGCGA...............................................................	26	8	0.13	1	1	0	0	0	0	0
.............................................................................................................ATACCTTTAATAGTTGGTAGTGGC.................................................................	24	8	0.13	1	1	0	0	0	0	0
................................................................................................................CCTTTAATAGTTGGTAGTGGC.................................................................	21	8	0.13	1	1	0	0	0	0	0
...................................................................................................CACGCATGTTATACCTTTAATAGTTGG........................................................................	27	8	0.13	1	1	0	0	0	0	0
...................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGC.......	25	8	0.13	1	1	0	0	0	0	0
.........................................................................................................TGTTATACCTTTAATAGTTGGTAGTGGC.................................................................	28	8	0.13	1	1	0	0	0	0	0
...........................................TCGCAATGTTG-TTG-TCTTACCAGCACCA.............................................................................................................................	28	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................CTCAGA---CTGACCATTATCAGGC.......	22	8	0.13	1	1	0	0	0	0	0
.............................................................TTACCAGCACCAGTAAAGCCACCAG................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
....................................TAATATATCGCAATGTTG-TTG-TCT........................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................TCCTAATAGGCTCAGA---CTGACCATTA.............	26	8	0.13	1	1	0	0	0	0	0
...........................................................................................................TTATACCTTTAATAGTTGGTAGTGGCGA...............................................................	28	8	0.13	1	1	0	0	0	0	0
.......................................................................................................................TAGTTGGTAGTGGCGATCGTTGTC-TTT...................................................	27	8	0.13	1	1	0	0	0	0	0
....................................................TG-TTG-TCTTACCAGCACCAGTAAAGCC.....................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
.......................................................TTG-TCTTACCAGCACCAGT...........................................................................................................................	19	8	0.13	1	1	0	0	0	0	0
..................................................................................CCAGAAGATGGCAAAGCCACGCATG...........................................................................................	25	8	0.13	1	1	0	0	0	0	0
.............................................................TTACCAGCACCAGTAAAGCCACCAGAA..............................................................................................................	27	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................................................TAATAGGCTCAGA---CTGACCATTATCAGG........	28	8	0.13	1	1	0	0	0	0	0
...........................................TCGCAATGTTG-TTG-TCTTACCAGCAC...............................................................................................................................	26	8	0.13	1	0	0	0	0	1	0
.................................................................CAGCACCAGTAAAGCCACCAGAAGATT..........................................................................................................	27	8	0.13	1	0	0	0	0	1	0
.......................................................TTG-TCTTACCAGCACCAGTAAAGCCACCA.................................................................................................................	29	8	0.13	1	1	0	0	0	0	0
..................TAATCACATAATATAAAATAATATATCGC.......................................................................................................................................................	29	8	0.13	1	1	0	0	0	0	0
...................................................TTG-TTG-TCTTACCAGCACCAGTAAAG.......................................................................................................................	26	8	0.13	1	1	0	0	0	0	0
............................................................CTTACCAGCACCAGTAAAGCCACCAGA...............................................................................................................	27	8	0.13	1	0	0	0	0	1	0
........................................................TG-TCTTACCAGCACCAGTAAAGCCACC..................................................................................................................	27	8	0.13	1	0	0	0	0	1	0
.......................................TATATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	28	8	0.13	1	1	0	0	0	0	0
.............................................................TTACCAGCACCAGTAAAGCCACCAGAAG.............................................................................................................	28	8	0.13	1	1	0	0	0	0	0
...........................................TCGCAATGTTG-TTG-TCTTACCAGCA................................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
.................................................TGTTG-TTG-TCTTACCAGCACCAGT...........................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................TCCTAATAGGCTCAGA---CTGACCATT..............	25	8	0.13	1	1	0	0	0	0	0
..........................................................................................TGGCAAAGCCACGCATGTTATACCTT..................................................................................	26	8	0.13	1	1	0	0	0	0	0
....................................................TG-TTG-TCTTACCAGCACCAGTAAAGCCAC...................................................................................................................	29	8	0.13	1	0	0	0	0	1	0
...............................................................................CCACCAGAAGATGGCAAAGCCACGCATG...........................................................................................	28	8	0.13	1	1	0	0	0	0	0

droAna3

TGTGTAAAAAAAACTAATTATTCACAA------AAGTAACACATAGCAATTAAA-TTTGGTTTACCAGCTCCATTGAATCCACCCGAATTTGGCGGAGATGCGCACGCCGAATCTTCACTGATTGGTAATGGTGATCGCGGTC-TTTTTTCAGTTCTCTGGGAAGTCTCAGCTTTTTGTGCATTGTTTTGGACATTTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................TTTCAGTTCTCTGGGAAGTCTCAGC..........................	25	1	7.00	7	4	3	0	0	0	0
..............................................................TACCAGCTCCATTGAATCCACCCGA...............................................................................................................	25	1	7.00	7	6	1	0	0	0	0
..............................................................TACCAGCTCCATTGAATCCACCCGAA..............................................................................................................	26	1	5.00	5	5	0	0	0	0	0
.....................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGCT.........................	24	1	4.00	4	4	0	0	0	0	0
...................................................................................................................................................TTTCAGTTCTCTGGGAAGTCTCAGCT.........................	26	1	2.00	2	1	0	0	0	1	0
..................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAGC..........................	26	1	2.00	2	2	0	0	0	0	0
.....................................................................TCCATTGAATCCACCCGAATTTGGCGGA.....................................................................................................	28	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................TTTTTGTGCATTGTTTTGGAC.....	21	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................TTTTTCAGTTCTCTGGGAAGTCTCAGC..........................	27	1	2.00	2	1	1	0	0	0	0
.......................................................TTTGGTTTACCAGCTCCATTGAATCC.....................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................TTACCAGCTCCATTGAATCCACCCGA...............................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAG...........................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................TAATGGTGATCGCGGTC-TTTTTTCAGT............................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAGCTT........................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................CCCGAATTTGGCGGAGATGCGC..............................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGCTT........................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGC..........................	23	1	1.00	1	0	1	0	0	0	0
.......................................................................CATTGAATCCACCCGAATTTGGCGG......................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................................AAGTAACACATAGCAATTAAA-TTTGGT.........................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................TTTTTCAGTTCTCTGGGAAGTCTCAG...........................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGCTTT.......................	26	1	1.00	1	1	0	0	0	0	0
..............................................................TACCAGCTCCATTGAATCCACCCGAAT.............................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................TCAGTTCTCTGGGAAGTCTCA............................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................TTTCAGTTCTCTGGGAAGTCTCAG...........................	24	1	1.00	1	1	0	0	0	0	0
..............................................................TACCAGCTCCATTGAATCCACCCGAATTT...........................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAGCT.........................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................TGATTGGTAATGGTGATCGCGGTC-......................................................	24	5	1.00	5	4	0	1	0	0	0
..............................................................................TCCACCCGAATTTGGCGGAGATGC................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................TGATTGGTAATGGTGATCGCGGTC-T.....................................................	25	5	0.40	2	1	1	0	0	0	0
....................................................................................................................CACTGATTGGTAATGGTGATCGCGG.........................................................	25	5	0.40	2	2	0	0	0	0	0
...................................................................................................................TCACTGATTGGTAATGGTGATCGC...........................................................	24	5	0.40	2	1	1	0	0	0	0
.......................................................................................................................TGATTGGTAATGGTGATCGCGG.........................................................	22	5	0.40	2	2	0	0	0	0	0
.......................................................................................................................TGATTGGTAATGGTGATCGCGGTC-C.....................................................	25	5	0.20	1	0	1	0	0	0	0
...................................................................................................................TCACTGATTGGTAATGGTGATCGCGGTC-......................................................	28	5	0.20	1	1	0	0	0	0	0
.........................................CATAGCAATTAAA-TTTGGTTTACCAGCTC...............................................................................................................................	29	5	0.20	1	1	0	0	0	0	0
..................................................................................................................TTCACTGATTGGTAATGGTGATCGCGG.........................................................	27	5	0.20	1	0	1	0	0	0	0
.................................................................................................GATGCGCACGCCGAATCTTCACTGATTGG........................................................................	29	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................TTGGTAATGGTGATCGCGGTC-TT....................................................	23	5	0.20	1	1	0	0	0	0	0
.............................................................................................................GAATCTTCACTGATTGGTAATGGT.................................................................	24	5	0.20	1	1	0	0	0	0	0
.......................................................................................................................TGATTGGTAATGGTGATCGCGGT........................................................	23	5	0.20	1	1	0	0	0	0	0
........................................................................................................................GATTGGTAATGGTGATCGCGGT........................................................	22	5	0.20	1	1	0	0	0	0	0
........................................................................................................................GATTGGTAATGGTGATCGCGGTC-......................................................	23	5	0.20	1	1	0	0	0	0	0
...................................................................................................................TCACTGATTGGTAATGGTGATCGCGG.........................................................	26	5	0.20	1	0	0	0	0	1	0
.................................................................................................GATGCGCACGCCGAATCTTCACTGA............................................................................	25	5	0.20	1	1	0	0	0	0	0

droBip1

CATATA---TAAATT-ATTAATCACTT------ATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTTAA---TAAATTAATTAGTTATTT------GAGTACCATTATATAATTTAG-TTT-TCTTACCGGCACAATTGAAACCACCAGAAAAAGGCTCAGATGTACACACTGAATATTCCTTTATCGGCAGTGGTGAACGAGGTC-TCTTTGCAGGATTTTTGGTAATTTCCAGCTCCTGTACATTATCTTTGACATTAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATATA---TAAATT-ATTAATCACTT------ATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCTTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TA--------AAACTAATTATTCACTA------AAATAACACA--GCAATTAAA-TTTGGCTTACCAGCTCCATTGAACCCACCAGA------------------------ATCTTCACAGATTGGTAATGGTGATCTCGGCC-TTTTTGCAGTTTTCTGAAAAGTCTCACCTATCTGTGCATTGTTTTGGACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTGTAAATAAAATCAATTACTCACAA------AAATAACACATAACAATTAAA-TTTAGCTTACCAGCTCCATTGAAACCATCAGAAATTGGAGGAGATGGGCACGCCGAATCTTCAACGATTGGTAATGGTGATCGCTGCC-TTTTCGGAGTTTTCTGGGAAGTCTTAGCTTCCTGTGCATTGTTT----------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGAGTAAATAAAACTACTTATTCACAA------AAATACCACATAGCAATTAAA-TTTAGCTTACCAGCTCCATTGAACCCACCAGAAGTTGGCGGAGAT------GCCGAATCTTCAATGATTGGTAATGGTGATCGCGGCC-TTTTTGGAGTTTTCTGGAAAGTCTCAGCTTCCTGTGCATTGTTTGGGACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CATATA---TAAATT-ATTAATCACTT------ATATAAAAAATCTCAGTTATA-T-T-GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGACGTTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGTCACTATTTAAAAAATTTT	Size	Hit Count	Total Norm	Total
No Reads

dpe_159

scaffold_144:3772-3830 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.3	-13.2	-13.2