ID:

dpe_1585

 Coordinate:

scaffold_4:3233186-3233478 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-56.2 -56.2 -56.1

Flybase annnotation

CDS [Dper\GL17479-cds]; exon [dper_GLEANR_19279:3]; CDS [Dper\GL17479-cds]; exon [dper_GLEANR_19279:2]; intron [Dper\GL17479-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCCACAAAGATGAAGCAGAGGAACAGGAGATGCGAGATCAGCTGGACAGTGAGCAGAAGGATACTAGAAACCGAAACCGCGTCAGTCGTCCATTCCACGCTAAACCAAAGTGGCGCCTCGAGTACGAACAAAGCCTCAAAGATGCGGCAGAGGAACGAGATCGAAATGACCAGCAGGAAAATGAGCAGAAGGAAACTAGAAAAGACAATGGACTGGAAAAGTTTCGGACTACTTTGGAGCAAAACAAAAGGAAAAACCTCCGACGAAGACAGAAGCTTAGGCGAGAAGAGGAATCGCAAGAGGGATCCCAGACTCTGGACCATATCGTTATCCAACTCCAGAGCAGCCTCCCATCCAGGAGCCGGAAGAGAACCAAGTGGAGAAAATATCT
**************************************************..(((.....(((((...((..(((((((....(((((((((..(((..(((((........)))))..(((....))).......((((....(((((((...((......))....)).)).)))......))))....((....)).)))..)))....))))))....))))))).((...((((((..................))))))...)).......(((..((((.........))))..)))((...((((...)))).))...))..)))))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 V111
male body		 V057
head
 M042
female body
...........................................................................................................CAAAGTGGCGCCTCGAGG............................................................................................................................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................................GAAGACAGAAGCTTAGGCGAGA......................................................................................................... 22 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................................GAGACAATGGACTGGAAA............................................................................................................................................................................ 18 1 2 0.50 1 0 0 1 0
..............................................................................................................................................................................................................................................................................................................................................................TACCATTCTGGAGCCGGAA........................ 19 3 17 0.06 1 0 0 0 1

Anti-sense strand reads

TTCGGTGTTTCTACTTCGTCTCCTTGTCCTCTACGCTCTAGTCGACCTGTCACTCGTCTTCCTATGATCTTTGGCTTTGGCGCAGTCAGCAGGTAAGGTGCGATTTGGTTTCACCGCGGAGCTCATGCTTGTTTCGGAGTTTCTACGCCGTCTCCTTGCTCTAGCTTTACTGGTCGTCCTTTTACTCGTCTTCCTTTGATCTTTTCTGTTACCTGACCTTTTCAAAGCCTGATGAAACCTCGTTTTGTTTTCCTTTTTGGAGGCTGCTTCTGTCTTCGAATCCGCTCTTCTCCTTAGCGTTCTCCCTAGGGTCTGAGACCTGGTATAGCAATAGGTTGAGGTCTCGTCGGAGGGTAGGTCCTCGGCCTTCTCTTGGTTCACCTCTTTTATAGA
**************************************************..(((.....(((((...((..(((((((....(((((((((..(((..(((((........)))))..(((....))).......((((....(((((((...((......))....)).)).)))......))))....((....)).)))..)))....))))))....))))))).((...((((((..................))))))...)).......(((..((((.........))))..)))((...((((...)))).))...))..)))))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 M021
embryo
...............................................................................................................................................................................................................................................................................................................................................................GGGTAGGGCGTCGGCCTTCTC..................... 21 2 1 1.00 1 1 0 0
....................................................................................................................................................CGGCTCCTGGCCCTAGCTT.................................................................................................................................................................................................................................. 19 3 18 0.17 3 0 1 2
................................................................TGGTCGTTGGCTGTGGCGCA..................................................................................................................................................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0
........................................................................................................................................................................................................................CATTGTCAAAGGCTGATGA.............................................................................................................................................................. 19 3 20 0.05 1 0 1 0
..........................................................................................................................................................................TGGTCGTCCTTTAGCTCGTT........................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_4:3233136-3233528 + dpe_1585 AAGCCACAAAGATGAAGCAGAGGAACAGGAGATGCGAGATCAGCTGGACAGTGAGCAGAAGGATACTAGAAACCGAAACCGCGTCAGTCGTCCATTCCACGCTAAACCAAAGTGGCGCCTCGAGTACGAACAAAGCCTCAAAGATGCGGCAGAGGAACGAGATCGAAATGACCAGCAGGAAAATGAGCAGAAGGAAACTAGAAAAGACAATGGACTGGAAAAGTTTCGGACTACTTTGGAGCAAAACAAAAGGAAAAACCTCCGACGAAGACAGAAGCTTAGGCGAGAAG-AGGAATCGCAAGAGGGATCCCAGACTCTGGACCATATCGTTATCCAACTCCAGAGCAGCCTCCCATCCAGGAGCCGGAAGAGAACCAAGTGGAGAAAATATCT
dp5 3:14372546-14372939 - AAGCCACAAAGATGAAGCAGAGGAACAGGAGATGCGAGATCAGCTGGACAGTGAGCAGAAGGACACTAGAAACCGAAACCGCGTCAGTCGTCCATTCCACGCTAAACCAAAGTGGCGCCTCGAGTACGAACAAAGCCTCAAAGATGCGGCAGAGGAACGAGATCGAAGAGACCAGCAGGAAAATGAGCAGAAGGAAACTAGAAAAGACAATGGACTGGAAAAGTTTCGGACTACTTTGGAGCAAAACAAAAGGAAAAACCTTCGACGAAGACAGAAGCTTAGGCGAGAATCAGGAATCGCAAGAGGGATCCCAGACTCTGGACCATATCGTAATCCAACTCCAGAGCAGCCTCCCATCCAGGAGCCGGAAGAGAACCAAGTGGAGAAAATATCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AAGCCACAAAGATGAAGCAGAGGAACAGGAGATGCGAGATCAGCTGGACAGTGAGCAGAAGGATACTAGAAACCGAAACCGCGTCAGTCGTCCATTCCACGCTAAACCAAAGTGGCGCCTCGAGTACGAACAAAGCCTCAAAGATGCGGCAGAGGAACGAGATCGAAATGACCAGCAGGAAAATGAGCAGAAGGAAACTAGAAAAGACAATGGACTGGAAAAGTTTCGGACTACTTTGGAGCAAAACAAAAGGAAAAACCTCCGACGAAGACAGAAGCTTAGGCGAGAAG-AGGAATCGCAAGAGGGATCCCAGACTCTGGACCATATCGTTATCCAACTCCAGAGCAGCCTCCCATCCAGGAGCCGGAAGAGAACCAAGTGGAGAAAATATCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................CAAAGTGGCGCCTCGAGG.............................................................................................................................................................................................................................................................................1811.001001000
..........................................................................................................................................................................................................................................................................GAAGACAGAAGCTTAGGCGAGA..........................................................................................................2211.001000001
dp5
AAGCCACAAAGATGAAGCAGAGGAACAGGAGATGCGAGATCAGCTGGACAGTGAGCAGAAGGACACTAGAAACCGAAACCGCGTCAGTCGTCCATTCCACGCTAAACCAAAGTGGCGCCTCGAGTACGAACAAAGCCTCAAAGATGCGGCAGAGGAACGAGATCGAAGAGACCAGCAGGAAAATGAGCAGAAGGAAACTAGAAAAGACAATGGACTGGAAAAGTTTCGGACTACTTTGGAGCAAAACAAAAGGAAAAACCTTCGACGAAGACAGAAGCTTAGGCGAGAATCAGGAATCGCAAGAGGGATCCCAGACTCTGGACCATATCGTAATCCAACTCCAGAGCAGCCTCCCATCCAGGAGCCGGAAGAGAACCAAGTGGAGAAAATATCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads

Generated: 06/08/2015 at 04:26 PM