dpe_1571

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGATCAGCGAGGCTGAGTCCGGCTACGAGACGGCCGAGAAGCGCATCAAGGTAAACAGCGTAGTAACGACGGAGGCGGCAGGATCGCCCGAGAATCCCTGTAATATTGCCGACGCCATTTCCGCGGGGAGTGTGGACACCAAGACAGGCCTGTACCGGGTCAAGTCGGGGCAGACCATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTC *******************************************************.....((..((((.((..(((((((..............(((((.....((((.((((....(((....))))))))).)).....)))))))))..)))..))..))))..))******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V042 embryo	M042 female body	V111 male body	V057 head
.....................................................................................................................................................CTGTACCGGGTCAAGTCGGGGC................................................................................	22	0	1	5.00	5	5	0	0	0	0
...........................................................................................................................................................................AGACCATCAGCCTGGCGGA.............................................................	19	0	1	2.00	2	0	2	0	0	0
....CAGCGAGGCTGAGTCCGGC....................................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
.........................................................................................................................................................................GCAGACCATCAGCCTGGCGGA.............................................................	21	0	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................ACCTCATCCGGCACGAGTCGGT......................	22	0	1	1.00	1	0	1	0	0	0
.........................................................GCGTAGTAACGACGGAGGC...............................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0
................................................................................................................................................................CAAGTCGGGGCAGACCATCAGCCTGGC................................................................	27	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................................TGTACCGGGCCAAGTCGGGGC................................................................................	21	1	1	1.00	1	0	0	1	0	0
..................................................................................ATCGCCCGAGAATCCCTGTAAT...................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................CGCGGCTACCTCCTCCGGCACGCGTCGGG......................	29	3	1	1.00	1	0	1	0	0	0
.....................................................................................................................TTTCCGCGGGGAGTGTGGA...................................................................................................................	19	0	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................ACGAGTCGGTGACAATCAAGTCGA........	24	0	1	1.00	1	0	0	0	1	0
.................................................................................................................................................GGGCCTGTAACGGGTGAAGT......................................................................................	20	3	2	0.50	1	0	0	1	0	0
............................................................................................................................................................................................TAGGTCTACGAGCTCGGCT............................................	19	3	9	0.11	1	1	0	0	0	0
..................................................................................................................................................................................................TGCGAGCGCGGCTGCCTCCT.....................................	20	3	10	0.10	1	0	0	0	0	1
...............................GTCCGTGGAGCGCATCAAGG........................................................................................................................................................................................................	20	3	17	0.06	1	0	0	1	0	0
..................................................................CGAGGAAGGCGGCGGGATC......................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0

TCTAGTCGCTCCGACTCAGGCCGATGCTCTGCCGGCTCTTCGCGTAGTTCCATTTGTCGCATCATTGCTGCCTCCGCCGTCCTAGCGGGCTCTTAGGGACATTATAACGGCTGCGGTAAAGGCGCCCCTCACACCTGTGGTTCTGTCCGGACATGGCCCAGTTCAGCCCCGTCTGGTAGTCGGACCGCCTCCGGATGCTCGCGCCGATGGAGTAGGCCGTGCTCAGCCACTGTTAGTTCAGCTTACGCGAG ******************************************************************************.....((..((((.((..(((((((..............(((((.....((((.((((....(((....))))))))).)).....)))))))))..)))..))..))))..))*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M042 female body
..................................................................................................................GGTAAAGGCGGCCCCCACAA.....................................................................................................................	20	3	5	0.20	1	0	1
..........................................................................................................ACGGCGGCGGCAAAGGGGCCC............................................................................................................................	21	3	7	0.14	1	1	0
............................................................................................................................................................................................CTCCGGTGGCTGGCGCCGAT...........................................	20	3	15	0.07	1	1	0
.................................................................................................................................................................................................................................GCCATTGTTAGTGCAGTTT.......	19	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_4:1970707-1970957 -	dpe_1571	AGATCAGCGAGGCTGAGTCCGGCTACGAGACGGCCGAGAAGCGCATCAAGGTAAACAGCGTAGTAACGACGGAGGC----------------------------------------GGCA---GGATCGCCCGAGAATCCCTGTAATATTGCCGACGCCATTTCCGCGGGGAGTGTGGACACCAAGACAGGCCTGTACCGGGTCAAGTCGGGGCAGACCATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTC
dp5	3:8057206-8057456 -		AGATCAGCGAGGCTGAGTCCGGCTACGAGACGGCCGAGAAGCGCATCAAGGTAAACAGCGTAGTAACGACGGAGGC----------------------------------------GGCA---GGATCGCCCGAGAATCCCTGTAATATTGCCGACGCCATTTCCGCGGGGAGTGTGGACACCAAGACAGGCCTGTACCGGGTCAAGTCGGGGCAGACCATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTC
droWil2	scf2_1100000004822:1428434-1428702 +		AGATTACCGAAGCGGAGACCGGCTATGAGACAGCCGAGAAGCGCATTAAGGTAAACAACACTGTCACAGTAGAGCAGAAA---------------ACATTGGATGAG-G------CGATC---GGATCGCCTGAGAATCCACGTAATATTGCCGACGCCATTTCTGCGGGGAGTGTGGACACAAGGACGGGCCTTTATCGTGTCAAGTCAGGCCAGACAATCAGCCTAGCAGAGGCCTATGAGCGTGGCTATCTAATACGGCACGAATCGGTGACAATCAAATCGAATGCACTA
droVir3	scaffold_12875:6292771-6293051 +		AGATAAACGAAGCCGAGTCCGGCTATGAGACGGCCGAGAAACGCATCAAGGTAAACAACACAGTCACAGTAGAGCAGTTGCCACTGCCAACGCAATCCCCC---TTG-G------ATGTA---GCATCCCCCGAGAAACCTAGAAATATTGTCGATGCCATTTGTGCGGGCAGTGTGGATGCCAAGACGGGCCTATATCGCGTCAAGTCGGGCCAAACAATTAGCCTGGCCGAGGCGTACGAGCGTGGCTATCTGATACGCCACGAATCGGTGACAATTAAATCGAATGCGCTG
droMoj3	scaffold_6496:23736463-23736743 -		AGATAAGCGAAGCGGAATCCGGCTATGAAACGGCGGAGAAACGCATCAAGGTAAACAACACAGTCACAGTAGAGCAGTTGCCATTGCCAACGCAATCCCCA---TTG-G------ATGTG---GCGTCCCCCGAGAAACCTAGAAATATTGTCGATGCCATATGTGCTGGCAGTGTGGATGCCAAGACCGGCCTGTATCGTGTCAAATCGGGCCAAACAATCAGCCTGGCCGAGGCGTACGAACGTGGCTATCTGATACGGCACGAATCGGTGACAATTAAATCGAATGCGCTG
droGri2	scaffold_15112:1181642-1181913 +		AGATAACCGAAGCCGAGACCGGCTATGAGACGGCCGAGAAACGCATCAAGGTAAACAGCACAGT------AGAGATGTCAC---AGTCA---------C-A---GCCGAAATCGGATGTGGCCACATCTCCCGAGAAACCTAGAAATATTGTCGATGCCATTTGTGCGGGCAGTGTGGATGCCAAGACGGGACTATATCGCGTCAAATCGGGTCAGACGATCAGCCTGGCCGAGGCATATGAGCGTGGCTATCTGATACGCCACGAATCGGTGACAATCAAATCGAATGCGCTG
droAna3	scaffold_13266:17084111-17084361 -		AAATAAACGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGAGGATTAAGGTAAACAGCACGGTGACCGTAGAGAGC----------------------------------------ACC---GGTTCGCCGGAGAATCCGCGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACGGGCCTGTATCGCGTCAAGTCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCACTG
droBip1	scf7180000396735:330435-330685 -		AGATTAACGAGGCGGAATCAGGCTACGAGACGGCCGAGAAGAGGATCAAGGTAAACAACACGGTGACCGTAGAGACG----------------------------------------ACA---GGGTCGCCGGAGAATCCGCGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACGGGCCTGTACCGCGTCAAGTCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCACTG
droKik1	scf7180000301798:110535-110794 -		AGATAACCGAAGCGGAATCCGGCTATGAAACGGCGGAGAAGCGGATCAAGGTAAACACT------ACCGTAGAGCAGTCGCCTGAGGCGA-------------------------CGCTG---GGTTCGCCCGAGAATCCACGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACTAAGACCGGCCTGTATCGCGTCAAATCTGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGTGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG
droFic1	scf7180000454066:1832728-1832996 +		AGATTAGCGAAGCGGAATCCGGCTTCGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA---------------CAATCCTCCACGGCG-G------AGATC---GTCTCGCCGGAGAATCCGCGCAACATTGCCGACGCCATTAGCGCGGGGAGTGTGGACACCAAGACGGGCCTGTACCGCGTCAAGTCGGGTCAAACCATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTCATCCGGCATGAGTCGGTGACAATCAAGTCGAATGCGCTG
droEle1	scf7180000491271:115466-115728 -		AGATTAGCGAAGCGGAATCCGGCTACGAGACGGCCGAAAAGCGGATCAAGGTAAACAACACGGTCACCGTTGAGCAA------------------ATGTCT---GGA-G------ACCTC---AGTTCTCCCGAGAATCCGCGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACCGGCCTATATCGAGTCAAATCAGGACAGACGATTAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTTATCCGGCACGAGTCGGTAACAATCAAATCGAATGCGCTG
droRho1	scf7180000779816:56271-56533 +		TGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAAAAGCGGATCAAGGTAAACAATACGATATCCGTAGAACAA------------------AGTTCT---GGA-G------AACTC---AGTTCTCCCGAGAACCCGCGAAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACTGGCCTATATCGTGTCAAATCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTTATTCGGCACGAGTCGGTGACAATCAAATCGAATGCGCTG
droBia1	scf7180000302291:350802-351061 +		AGATTAGCGAAGCGGAATCTGGTTACGAAACGGCCGAGAAGCGTATAAAGGTAAACAAAACGGTCACCGTAGAGTCA---------------------CCG---GGG-G------AACTG---GGTTCCCCCGAAAATCCCCGAAACATTGCCGACGCCATTTCCGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTAAAATCGGGCCAGACGATCAGCCTGGCTGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATTAAGTCGAATGCGCTG
droTak1	scf7180000415401:851090-851355 +		AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAGCACGGTCACCGTAGAGCAGACG---------------GCATCA---GGG-G------AGCTG---GGTTCTCCCGAGAATCCGCGCAACATTGCCGACGCCATAACCGCGGGGAGTGTGGACACCAAGACGGGCCTGTATCGCGTCAAATCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG
droEug1	scf7180000409462:3071070-3071332 +		AGATTACTGAAGCGGAATCCGGTTACGAGACGGCAGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA------------------GCAACC---GGA-G------AGCTG---GGCTCTCCTGAGAATCCCCGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACGGGCCTGTATCGCGTGAAATCTGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAATCGGTGACAATCAAGTCGAATGCGCTG
dm3	chr2R:9781422-9781684 -		AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACAGTCACCGTAGAGCAA------------------ACTTCC---GGA-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAAACCGGCCTGTATCGCGTCAAATCCGGACAGACAATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAATCGAATGCGCTG
droSim2	2r:10470718-10470980 -		AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA------------------ACCTCC---GGA-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTCAAATCCGGACAGACGATCAGCCTGGCGGAGGCCTACGAGCGTGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG
droSec2	scaffold_1:7308287-7308549 -		AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCCA------------------ACCTCC---GGA-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGATGCCATTACTGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTTAAATCCGGACAGACGATCAGCCTGGCGGAGGCCTACGAGCGTGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG
droYak3	2R:7172072-7172334 +		AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCTGAGAAGCGGATCAAGGTAAACAACACGATCACCGTAGAGCAA------------------GCGTCC---GGG-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTCAAGTCCGGACAGACGATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG
droEre2	scaffold_4845:16038088-16038350 +		AGATAAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA------------------ACGTCC---GGG-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTGAAATCCGGACAGACTATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AGATCAGCGAGGCTGAGTCCGGCTACGAGACGGCCGAGAAGCGCATCAAGGTAAACAGCGTAGTAACGACGGAGGC----------------------------------------GGCA---GGATCGCCCGAGAATCCCTGTAATATTGCCGACGCCATTTCCGCGGGGAGTGTGGACACCAAGACAGGCCTGTACCGGGTCAAGTCGGGGCAGACCATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................CTGTACCGGGTCAAGTCGGGGC................................................................................	22	1	5.00	5	5	0	0	0	0	0
......................................................................................................................................................................................................................AGACCATCAGCCTGGCGGA.............................................................	19	1	2.00	2	0	0	2	0	0	0
....CAGCGAGGCTGAGTCCGGC...............................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................GCAGACCATCAGCCTGGCGGA.............................................................	21	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................ACCTCATCCGGCACGAGTCGGT......................	22	1	1.00	1	0	0	1	0	0	0
.........................................................GCGTAGTAACGACGGAGGC----------------------------------------..................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................CAAGTCGGGGCAGACCATCAGCCTGGC................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................ATCGCCCGAGAATCCCTGTAAT...................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................TTTCCGCGGGGAGTGTGGA...................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................ACGAGTCGGTGACAATCAAGTCGA........	24	1	1.00	1	0	0	0	0	0	1

dp5

AGATCAGCGAGGCTGAGTCCGGCTACGAGACGGCCGAGAAGCGCATCAAGGTAAACAGCGTAGTAACGACGGAGGC----------------------------------------GGCA---GGATCGCCCGAGAATCCCTGTAATATTGCCGACGCCATTTCCGCGGGGAGTGTGGACACCAAGACAGGCCTGTACCGGGTCAAGTCGGGGCAGACCATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................CGGGGAGTGTGGACACCAAGACAGGC......................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
....................................................................................................................................................................................................................................................GCGGCTACCTCATCCGGC................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.......CGAGGCTGAGTCCGGCTACGAGACGGC....................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................................................................................GACCATCAGCCTGGCGGAGGC..........................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....AGCGAGGCTGAGTCCGGCTACGAGACGGC....................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................................................GTAAACAGCGTAGTAACGACGGAGG...........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGTGACAATCAAGTCGAATGCG...	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................GTCGGGGCAGACCATCAGCCTGGC................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................GCGTAGTAACGACGGAGGC----------------------------------------GGCA---...........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................ATTTCCGCGGGGAGTGTGGA...................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GACACCAAGACAGGCCTGTACCGGGT...........................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTCATCCGGCACGAGTCGGT......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................AGTAACGACGGAGGC----------------------------------------GGCA---G..........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACCATCAGCCTGGCGGAGGCCTAC......................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................CATCAAGGTAAACAGCGTA........................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................TTTCCGCGGGGAGTGTGGACACCA..............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................TTGCCGACGCCATTTCCGCGGGGAGTG.......................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AGACAGGCCTGTACCGGGT...........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CTGTACCGGGTCAAGTCGGGGC................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GCGGCTACCTCATCCGGCACGAGTC.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CACGAGTCGGTGACAATCAAGTCGAATGC....	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCAGACCATCAGCCTGGCGGAGG...........................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................GTAGTAACGACGGAGGC----------------------------------------GGCA---GGAT.......................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACCATCAGCCTGGCGGAGGCC.........................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................CTACGAGCGCGGCTACCTCATCCGGC................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................GACAGGCCTGTACCGG.............................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................GTACCGGGTCAAGTCGGGGCA...............................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

AGATTACCGAAGCGGAGACCGGCTATGAGACAGCCGAGAAGCGCATTAAGGTAAACAACACTGTCACAGTAGAGCAGAAA---------------ACATTGGATGAG-G------CGATC---GGATCGCCTGAGAATCCACGTAATATTGCCGACGCCATTTCTGCGGGGAGTGTGGACACAAGGACGGGCCTTTATCGTGTCAAGTCAGGCCAGACAATCAGCCTAGCAGAGGCCTATGAGCGTGGCTATCTAATACGGCACGAATCGGTGACAATCAAATCGAATGCACTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................GTAGAGCAGAAA---------------ACATTGGATGAG-G------C..................................................................................................................................................................................	26	1	6.00	6	0	1	3	2	0
...........................................................................AGAAA---------------ACATTGGATGAG-G------C..................................................................................................................................................................................	19	1	5.00	5	0	0	2	3	0
......................................................................AGAGCAGAAA---------------ACATTGGATGAG-G------C..................................................................................................................................................................................	24	1	4.00	4	0	0	3	1	0
....................................................AAACAACACTGTCACAGTAGAGCAGA........................................................................................................................................................................................................................	26	1	4.00	4	0	0	2	2	0
.................................................................................................ATTGGATGAG-G------CGATC---GGATCGC....................................................................................................................................................................	23	1	4.00	4	0	0	3	1	0
............................................................................GAAA---------------ACATTGGATGAG-G------C..................................................................................................................................................................................	18	1	3.00	3	0	0	1	2	0
.........................................................................GCAGAAA---------------ACATTGGATGAG-G------C..................................................................................................................................................................................	21	1	2.00	2	0	1	0	1	0
..............................................................................................................................................................................GTGGACACAAGGACGGGC......................................................................................................	18	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................................................CAGAGGCCTATGAGCGTGGCT............................................	21	1	2.00	2	0	0	0	2	0
................................................................................................................................................AATATTGCCGACGCCATTT...................................................................................................................................	19	1	2.00	2	0	2	0	0	0
...............................AGCCGAGAAGCGCATTAAGGT..................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
....................................................................................................................GATC---GGATCGCCTGAGAATC...........................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
..ATTACCGAAGCGGAGACC..................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
.................................................................................................................................................................................................................................CTAGCAGAGGCCTATGAGCGTGGC.............................................	24	1	2.00	2	0	0	2	0	0
.........................................................................GCAGAAA---------------ACATTGGATGAG-G------...................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
..........................................................................................................................................................................................................................................................ATCTAATACGGCACGAATCGGTGACA..................	26	1	2.00	2	0	0	1	1	0
....................................................AAACAACACTGTCACAGTAGAGCAGAA.......................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
............................GACAGCCGAGAAGCGCATTAAG....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................CAGAAA---------------ACATTGGATGAG-G------...................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................CTATCTAATACGGCACGAATCGGT......................	24	1	1.00	1	0	0	0	1	0
....TACCGAAGCGGAGACCGGCT..............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................CTAGCAGAGGCCTATGAGCGT................................................	21	1	1.00	1	0	0	0	1	0
..........................GAGACAGCCGAGAAGCGCATTAAGGC..................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
....................................................AAACAACACTGTCACAGTAGAGC...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..............................................................GTCACAGTAGAGCAGAAA---------------AC.....................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................CAAGGACGGGCCTTTATCGT.............................................................................................	20	1	1.00	1	0	0	0	1	0
....................................................................................................................GATC---GGATCGCCTGAGAAT............................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................AGTGTGGACACAAGGACGGGC......................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................AGCAGAGGCCTATGAGCGTG...............................................	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................ATCCACGTAATATTGCCGACGCC.......................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.GATTACCGAAGCGGAGACC..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................GGCACGAATCGGTGACAATCAAATCGAAT......	29	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................AGCAGAGGCCTATGAGCGT................................................	19	1	1.00	1	0	0	1	0	0
.................................................GGTAAACAACACTGTCACAGTAGAGCA..........................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..............................................................GTCACAGTAGAGCAGAAA---------------.......................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
........................ATGAGACAGCCGAGAAGCG...........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................CATTTCTGCGGGGAGTGTGGA...................................................................................................................	21	1	1.00	1	0	0	1	0	0
............................................................................GAAA---------------ACATTGGATGAG-G------CG.................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................ATCTAATACGGCACGAATCGGT......................	22	1	1.00	1	0	0	0	1	0
........GAAGCGGAGACCGGCTATGAGACA......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................GGACACAAGGACGGGCCT....................................................................................................	18	1	1.00	1	0	0	0	1	0
.................................................................................................ATTGGATGAG-G------CGATC---GGATCG.....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................AGCCTAGCAGAGGCCTATGAGCGT................................................	24	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................AGCCTAGCAGAGGCCTATGAGCGTG...............................................	25	1	1.00	1	0	1	0	0	0
........................ATGAGACAGCCGAGAAGCGC..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
............................................................................................................................................................GCCATTTCTGCGGGGAGTGTGGA...................................................................................................................	23	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................CAGACAATCAGCCTAGCAGA.............................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................AA---------------ACATTGGATGAG-G------CGATC---GGATCGC....................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................ATCAGCCTAGCAGAGGCCTATGAGCGT................................................	27	1	1.00	1	0	0	1	0	0
......................................................................AGAGCAGAAA---------------ACATTGGATGA............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................CAAGGACGGGCCTTTATCGTGT...........................................................................................	22	1	1.00	1	0	0	0	1	0
....................................................AAACAACACTGTCACAGTAGAGCAG.........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
....................................................................................................................GATC---GGATCGCCTGAGAATCCA.........................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................CACAAGGACGGGCCTTTAT................................................................................................	19	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................CTAGCAGAGGCCTATGAGCGTGGCT............................................	25	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................CTAATACGGCACGAATCGGT......................	20	1	1.00	1	0	0	0	1	0
...TTACCGAAGCGGAGACCG.................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........................................................................AGAAA---------------ACATTGGATGAG-G------...................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................GGGCCTTTATCGTGTCAAGT......................................................................................	20	1	1.00	1	0	0	0	0	1
...........................................CATTAAGGTAAACAACACTGT......................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................CAGACAATCAGCCTAGCAGAGGC..........................................................	23	1	1.00	1	0	0	0	1	0
.....................................................AACAACACTGTCACAGTAGAGCAGA........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
....................GGCTATGAGACAGCCGAGAAGCGC..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................GCCTTTATCGTGTCAAGTCA....................................................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................TCGCCTGAGAATCCACGT......................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................TAGCAGAGGCCTATGAGCGT................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................CAGAAA---------------ACATTGGATGAG-G------C..................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................................................................A---------------ACATTGGATGAG-G------CGATC---GGATCG.....................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................ACAGTAGAGCAGAAA---------------ACATTGGATGAG-G------C..................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................ACACAAGGACGGGCCTTTATCGT.............................................................................................	23	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................AGCCTAGCAGAGGCCTATGAGCG.................................................	23	1	1.00	1	0	1	0	0	0
............................GACAGCCGAGAAGCGCATTAAGGT..................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................GACGCCATTTCTGCGGGGAGT........................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................CTAGCAGAGGCCTATGAGCGTGG..............................................	23	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................GACGCCATTTCTGCGGGGAGTGTGG....................................................................................................................	25	1	1.00	1	0	0	1	0	0
..........................................................CACTGTCACAGTAGAGCAGA........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................GACAATCAAATCGAATGCACT.	21	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................GTGTGGACACAAGGACGGGCC.....................................................................................................	21	1	1.00	1	0	0	1	0	0
......................CTATGAGACAGCCGAGAAGC............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................GACACAAGGACGGGCCTTTATCGTGT...........................................................................................	26	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................TAGCAGAGGCCTATGAGCGTGG..............................................	22	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................AATACGGCACGAATCGGTGA....................	20	1	1.00	1	0	0	0	1	0

droVir3

AGATAAACGAAGCCGAGTCCGGCTATGAGACGGCCGAGAAACGCATCAAGGTAAACAACACAGTCACAGTAGAGCAGTTGCCACTGCCAACGCAATCCCCC---TTG-G------ATGTA---GCATCCCCCGAGAAACCTAGAAATATTGTCGATGCCATTTGTGCGGGCAGTGTGGATGCCAAGACGGGCCTATATCGCGTCAAGTCGGGCCAAACAATTAGCCTGGCCGAGGCGTACGAGCGTGGCTATCTGATACGCCACGAATCGGTGACAATTAAATCGAATGCGCTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................CATCAAGGTAAACAACACAGTCACAGTA...............................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTGGCCGAGGCGTACGAGCGT................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................GCCTGGCCGAGGCGTACGAGCGTGGCTA...........................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................AAACAATTAGCCTGGCCGAGGC..........................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCCTGGCCGAGGCGTACGAGCGT................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GAGGCGTACGAGCGTGGCT............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................ATATCGCGTCAAGTCGGGCCAAAC............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................CCCCC---TTG-G------ATGTA---GCATCCCCCGA................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CCTGGCCGAGGCGTACGAGCGTG...............................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATACGCCACGAATCGGTGAC...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................CATTTGTGCGGGCAGTGTG.....................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................GCCTGGCCGAGGCGTACGAGC..................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATAAACGAAGCCGAGTCC..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCCTATATCGCGTCAAGTCGGG..................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................TATGAGACGGCCGAGAAACG...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CTGCCAACGCAATCCCCC---TT............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GCTATCTGATACGCCACGAATC.........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CGCAATCCCCC---TTG-G------ATGTG---...........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GCTATCTGATACGCCACGAATCGGT......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TCTGATACGCCACGAATCGGTGACA..................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCGCGTCAAGTCGGGCCA...............................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAATTAAATCGAATGCGCT.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................GTGGATGCCAAGACGGGCCTAT..................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................TTAGCCTGGCCGAGGCGTACGAGCGTG...............................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GAAATATTGTCGATGCC.......................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................GGCCGAGGCGTACGAGCGTGGCT............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTGTGGATGCCAAGACGGGCCT....................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................CTATATCGCGTCAAGTCG....................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCCTATATCGCGTCAAGTC.....................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CAACACAGTCACAGTAGAGC...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................TATCGCGTCAAGTCGGGCC................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................ATATCGCGTCAAGTCGGGC.................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........GAAGCCGAGTCCGGCTATGAGACGGCC...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGCCGAGTCCGGCTATGAGACGGCCGAG................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................AAACAATTAGCCTGGCCGAG............................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GTCGATGCCATTTGTGCGGGC...........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CGGGCCTATATCGCGTCAAGTC.....................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATACGCCACGAATCGGTGA....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GGGCCAAACAATTAGCCTGGC................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGAGTCCGGCTATGAGACGGC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................GACGGGCCTATATCGCGTCAAGTCGG...................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GTCGATGCCATTTGTGCGGGCAGT........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................ACACAGTCACAGTAGAGCAGTTGCCAC..................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GGCCTATATCGCGTCAAG.......................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GCGTGGCTATCTGATACGCCA...............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGCCGAGTCCGGCTATGAGACGGCC...................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CGAGAAACCTAGAAATATTGT..............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TATATCGCGTCAAGTCGGGCC................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATCTGATACGCCACGAATCGGT......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGATAAGCGAAGCGGAATCCGGCTATGAAACGGCGGAGAAACGCATCAAGGTAAACAACACAGTCACAGTAGAGCAGTTGCCATTGCCAACGCAATCCCCA---TTG-G------ATGTG---GCGTCCCCCGAGAAACCTAGAAATATTGTCGATGCCATATGTGCTGGCAGTGTGGATGCCAAGACCGGCCTGTATCGTGTCAAATCGGGCCAAACAATCAGCCTGGCCGAGGCGTACGAACGTGGCTATCTGATACGGCACGAATCGGTGACAATTAAATCGAATGCGCTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................CGTACGAACGTGGCTATCTGATAC...................................	24	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATCTGATACGGCACGAATC.........................	19	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................CTGTATCGTGTCAAATCGGGC.................................................................................	21	1	2.00	2	1	0	0	0	0	1
............................................................................................................................................................................................................................................GTACGAACGTGGCTATCTGATAC...................................	23	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATACGGCACGAATCGGT......................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................GCAATCCCCA---TTG-G------ATGTG---GC.........................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................AATATTGTCGATGCCATATGTGCTGGCA..........................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................AATCCCCA---TTG-G------ATGTG---GC.........................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................GGCACGAATCGGTGACAATTAAATCGA........	27	1	1.00	1	0	0	0	0	0	1
......................CTATGAAACGGCGGAGAAAC............................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................GATACGGCACGAATCGGTGACAAT................	24	1	1.00	1	1	0	0	0	0	0
..............................................................GTCACAGTAGAGCAGTTGCCATTGCCAAC...........................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.............................................................................................AATCCCCA---TTG-G------ATGTG---GCGTC......................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................CTGATACGGCACGAATCGGTGACA..................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................TGCTGGCAGTGTGGATGCCAAG............................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................CGTACGAACGTGGCTATCT........................................	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................CAAACAATCAGCCTGGCCGAGGC..........................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................ATTGTCGATGCCATATGTGCTGGCA..........................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
......................................................ACAACACAGTCACAGTAGAGCAGTT.......................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................GTCACAGTAGAGCAGTTGCCATTGC...............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................GCTATCTGATACGGCACGAATCG........................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................CCTGTATCGTGTCAAATCGGG..................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................ACAATCAGCCTGGCCGAGGCGTAC......................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................TTGCCATTGCCAACGCAATCCCC..................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................GGCACGAATCGGTGACAATT...............	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................GAATCGGTGACAATTAAATCG.........	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................GCAGTGTGGATGCCAAGA...........................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................ATATGTGCTGGCAGTGTGG....................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................CAAATCGGGCCAAACAATCA.......................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................GTACGAACGTGGCTATCTGATACGGCA...............................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................GGCTATCTGATACGGCACGAATCGGTGA....................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................AAACAATCAGCCTGGCCGA.............................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................GATGCCAAGACCGGCCTGT..................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................GTATCGTGTCAAATCGGGCC................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................ATGAAACGGCGGAGAAACGC..........................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GAACGTGGCTATCTGATAC...................................	19	1	1.00	1	1	0	0	0	0	0
.......................................AACGCATCAAGGTAAACAACACAG.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................CTGGCCGAGGCGTACGAACGTGGCTAT..........................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................GTGTCAAATCGGGCCAAACAAT.........................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................GTACGAACGTGGCTATCTGATA....................................	22	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................AGTGTGGATGCCAAGACCGGC......................................................................................................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................CTGTATCGTGTCAAATCGGGCC................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GAACGTGGCTATCTGATACGGCAC..............................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................CTGTATCGTGTCAAATCGGGCCA...............................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................CGAGGCGTACGAACGTGGCTAT..........................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGATACGGCACGAATCGGTGAC...................	22	1	1.00	1	1	0	0	0	0	0
....................GGCTATGAAACGGCGGAGAAACGCATCA......................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1

droGri2

AGATAACCGAAGCCGAGACCGGCTATGAGACGGCCGAGAAACGCATCAAGGTAAACAGCACAGT------AGAGATGTCAC---AGTCA---------C-A---GCCGAAATCGGATGTGGCCACATCTCCCGAGAAACCTAGAAATATTGTCGATGCCATTTGTGCGGGCAGTGTGGATGCCAAGACGGGACTATATCGCGTCAAATCGGGTCAGACGATCAGCCTGGCCGAGGCATATGAGCGTGGCTATCTGATACGCCACGAATCGGTGACAATCAAATCGAATGCGCTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................................................GATACGCCACGAATCGGTG.....................	19	1	1.00	1	1	0
.............................................................................................................................................................CCATTTGTGCGGGCAGTGTG.....................................................................................................................	20	1	1.00	1	0	1

droAna3

AAATAAACGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGAGGATTAAGGTAAACAGCACGGTGACCGTAGAGAGC----------------------------------------ACC---GGTTCGCCGGAGAATCCGCGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACGGGCCTGTATCGCGTCAAGTCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCACTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................ACGAGTCGGTGACAATCAAGT...........	21	1	2.00	2	0	0	0	0	1	1
................................................................GACCGTAGAGAGC----------------------------------------ACC---GGTTCGCCGGAGA..............................................................................................................................................................	29	1	2.00	2	0	0	1	0	1	0
.......................................................................................................................................................................................................................GACGATCAGCCTGGCGGAGGC..........................................................	21	1	2.00	2	0	0	0	0	2	0
............................................................................................................................................................................................................................................CTACGAGCGGGGCTACCT........................................	18	1	2.00	2	1	0	0	0	0	1
......................................................................................................................................................................................................................AGACGATCAGCCTGGCGGAGGC..........................................................	22	1	2.00	2	0	2	0	0	0	0
..........................................................................................................................................................................GAGTGTGGACACCAAGACGGGC......................................................................................................	22	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................CTACGAGCGGGGCTACCTCATCC...................................	23	1	2.00	2	0	1	0	0	1	0
..............................................................GTGACCGTAGAGAGC----------------------------------------ACC---GGT........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................GGTGACCGTAGAGAGC----------------------------------------ACC---GGTTCGCC...................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............................................................................C----------------------------------------ACC---GGTTCGCCGGAGAATCCGCGC......................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................ATTACTGCGGGGAGTGTGGAC..................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................CTACGAGCGGGGCTACCC........................................	18	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................CTACGAGCGGGGCTACCTCATCCGG.................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................CGAGTCGGTGACAATCAAGTC..........	21	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................CCTACGAGCGGGGCTACCC........................................	19	1	1.00	1	0	1	0	0	0	0
.........AAGCGGAATCCGGTTACGAGACG......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................GACAATCAAGTCGAATGCACT.	21	1	1.00	1	0	0	0	0	0	1
.........................................................GCACGGTGACCGTAGAGAGC----------------------------------------ACC---G..........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................GACGGGCCTGTATCGCGTCAAGTCGGGC.................................................................................	28	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................GCCTGTATCGCGTCAAGTCGGGC.................................................................................	23	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................GTATCGCGTCAAGTCGGGCCAGAC............................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................CGCGTCAAGTCGGGCCAGAC............................................................................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................CAAGTCGGGCCAGACGATC........................................................................	19	1	1.00	1	0	1	0	0	0	0
...........................................GATTAAGGTAAACAGCACGGT......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
........GAAGCGGAATCCGGTTACGAG.........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................GATCAGCCTGGCGGAGGCCTACGAG...................................................	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................GCCATTACTGCGGGGAGTGT......................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................CTACGAGCGGGGCTACCTCATCCGGC................................	26	1	1.00	1	0	0	0	0	1	0
...........GCGGAATCCGGTTACGAGA........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................CATTACTGCGGGGAGTGTGGA...................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................TACGAGCGGGGCTACCTCATCCGGC................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................CGCGTCAAGTCGGGCCAGACGATC........................................................................	24	1	1.00	1	0	1	0	0	0	0
..ATAAACGAAGCGGAATCCG.................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................CGATCAGCCTGGCGGAGGCCTACGAGC..................................................	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................GACGCCATTACTGCGGGGAGTGTGGA...................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................GGCACGAGTCGGTGACAATCAAGT...........	24	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................ACGAGCGGGGCTACCTCATCCGGCACGA............................	28	1	1.00	1	1	0	0	0	0	0
................................................................GACCGTAGAGAGC----------------------------------------ACC---GGTT.......................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................AAACAGCACGGTGACCGTAGA.............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................GTGACAATCAAGTCGAATGC....	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................ACGGGCCTGTATCGCGTCAAGTCGGGC.................................................................................	27	1	1.00	1	1	0	0	0	0	0

droBip1

AGATTAACGAGGCGGAATCAGGCTACGAGACGGCCGAGAAGAGGATCAAGGTAAACAACACGGTGACCGTAGAGACG----------------------------------------ACA---GGGTCGCCGGAGAATCCGCGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACGGGCCTGTACCGCGTCAAGTCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCACTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGATAACCGAAGCGGAATCCGGCTATGAAACGGCGGAGAAGCGGATCAAGGTAAACACT------ACCGTAGAGCAGTCGCCTGAGGCGA-------------------------CGCTG---GGTTCGCCCGAGAATCCACGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACTAAGACCGGCCTGTATCGCGTCAAATCTGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGTGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGATTAGCGAAGCGGAATCCGGCTTCGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA---------------CAATCCTCCACGGCG-G------AGATC---GTCTCGCCGGAGAATCCGCGCAACATTGCCGACGCCATTAGCGCGGGGAGTGTGGACACCAAGACGGGCCTGTACCGCGTCAAGTCGGGTCAAACCATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTCATCCGGCATGAGTCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGATTAGCGAAGCGGAATCCGGCTACGAGACGGCCGAAAAGCGGATCAAGGTAAACAACACGGTCACCGTTGAGCAA------------------ATGTCT---GGA-G------ACCTC---AGTTCTCCCGAGAATCCGCGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACCGGCCTATATCGAGTCAAATCAGGACAGACGATTAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTTATCCGGCACGAGTCGGTAACAATCAAATCGAATGCGCTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAAAAGCGGATCAAGGTAAACAATACGATATCCGTAGAACAA------------------AGTTCT---GGA-G------AACTC---AGTTCTCCCGAGAACCCGCGAAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACTGGCCTATATCGTGTCAAATCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGGGGCTACCTTATTCGGCACGAGTCGGTGACAATCAAATCGAATGCGCTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGATTAGCGAAGCGGAATCTGGTTACGAAACGGCCGAGAAGCGTATAAAGGTAAACAAAACGGTCACCGTAGAGTCA---------------------CCG---GGG-G------AACTG---GGTTCCCCCGAAAATCCCCGAAACATTGCCGACGCCATTTCCGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTAAAATCGGGCCAGACGATCAGCCTGGCTGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATTAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAGCACGGTCACCGTAGAGCAGACG---------------GCATCA---GGG-G------AGCTG---GGTTCTCCCGAGAATCCGCGCAACATTGCCGACGCCATAACCGCGGGGAGTGTGGACACCAAGACGGGCCTGTATCGCGTCAAATCGGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGATTACTGAAGCGGAATCCGGTTACGAGACGGCAGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA------------------GCAACC---GGA-G------AGCTG---GGCTCTCCTGAGAATCCCCGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACGGGCCTGTATCGCGTGAAATCTGGCCAGACGATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAATCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACAGTCACCGTAGAGCAA------------------ACTTCC---GGA-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAAACCGGCCTGTATCGCGTCAAATCCGGACAGACAATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAATCGAATGCGCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................CGAGCGCGGCTACCTCATCC...................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
..................................................................................................................................................................ACTGCGGGGAGTGTGGAC..................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0
................................................................................................................................................................TTACTGCGGGGAGTGTGGAC..................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................ACTGCGGGGAGTGTGGACACC...............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCGGATCAAGGTAAACAAC...........................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................CTACGAGCGCGGCTACCTCATCC...................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................CATTACTGCGGGGAGTGTG.....................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATCAGCCTGGCGGAGGCCTACGAGCGC................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GCCATTACTGCGGGGAGTGTG.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TACCTCATCCGGCACGAGTCG........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATTACTGCGGGGAGTGTGGAA..................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AGCGAAGCGGAATCCGGTT..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CCGTAGAGCAA------------------ACTTCC---GGA-..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA------------------ACCTCC---GGA-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACTGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTCAAATCCGGACAGACGATCAGCCTGGCGGAGGCCTACGAGCGTGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................CGGTCACCGTAGAGCAA------------------ACCTCC---GGA-..........................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AATCCGGACAGACGATCAGC.....................................................................	20	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AATCCGGACAGACGATCAGCC....................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CACCAAGACCGGCCTGTAT................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAATCCGGACAGACGATCAGCC....................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................CAAATCCGGACAGACGATCAGCCTGGC................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGTATCGCGTCAAATCCG...................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAAATCCGGACAGACGATCAGCCT...................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GGTCACCGTAGAGCAA------------------ACCT...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................AGTGTGGACACCAAGACCGGCCTGT..................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................AAATCCGGACAGACGATCAGCCTGGC................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TGTGGACACCAAGACCGGCCTGTATC...............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGTGTGGACACCAAGACC.........................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAAATCCGGACAGACGATCAGC.....................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ACCGGCCTGTATCGCGTCAAATCCGGA.................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................GAGGCCTACGAGCGTGGCTAC..........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................AGACGATCAGCCTGGCGGAGGC..........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................ATCGCGTCAAATCCGGACA...............................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCCTGTATCGCGTCAAATCCGGA.................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................AGACCGGCCTGTATCGCGT...........................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTGTGGACACCAAGACCGGCC.....................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GTAGAGCAA------------------ACCTCC---GGA-..........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GGCTACCTCATCCGGCACGAGTCGGTGAC...................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AACAACACGGTCACCGTAGAGC...........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GACACCAAGACCGGCCTGTATC...............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CCGTAGAGCAA------------------ACCTCC---GGA-G------AGCTG---GG.........................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................ACGAGTCGGTGACAATCA..............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCCA------------------ACCTCC---GGA-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGATGCCATTACTGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTTAAATCCGGACAGACGATCAGCCTGGCGGAGGCCTACGAGCGTGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................ATTACTGCGGGGAGTGTGGACACCA..............................................................................................................	25	1	2.00	2	0	1	1	0
............................................................................................................................................................................................................................................CTACGAGCGTGGCTACCTCATCCGGC................................	26	1	1.00	1	0	1	0	0
.........................................................ACACGGTCACCGTAGAGCCA------------------.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.........................................................................GCCA------------------ACCTCC---GGA-G------AGCTG---G..........................................................................................................................................................................	20	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................CTACGAGCGTGGCTACCTCATCC...................................	23	1	1.00	1	0	1	0	0
....................GGTTACGAGACGGCCGAGAAGCGGA.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................AGACGATCAGCCTGGCGGAGGC..........................................................	22	1	1.00	1	0	0	1	0
...............................................................................................................................................................ATTACTGCGGGGAGTGTGG....................................................................................................................	19	1	1.00	1	0	0	1	0
...........GCGGAATCCGGTTACGAGACGGCCG..................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................................................................................................................................GATGCCATTACTGCGGGGAGTGTGG....................................................................................................................	25	1	1.00	1	0	0	1	0
...............AATCCGGTTACGAGACGGC....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
..................................CGAGAAGCGGATCAAGGT..................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................GCACGAGTCGGTGACAATCAAGTCGA........	26	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................GGCCTGTATCGCGTTAAATCCGG..................................................................................	23	1	1.00	1	0	0	0	1
........................................................................................................................................................CGATGCCATTACTGCGGGGAGTGT......................................................................................................................	24	1	1.00	1	1	0	0	0
...................................................................................................................AGCTG---GGCTCTCCCGAGAATCCAC........................................................................................................................................................	24	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................CGATCAGCCTGGCGGAGGCCT........................................................	21	1	1.00	1	0	0	1	0
.............................................................................................................................................................CCATTACTGCGGGGAGTGT......................................................................................................................	19	1	1.00	1	1	0	0	0
....................................................................................................................................................................TGCGGGGAGTGTGGACACCAAGAC..........................................................................................................	24	1	1.00	1	0	1	0	0

droYak3

AGATTAGCGAAGCGGAATCCGGTTACGAGACGGCTGAGAAGCGGATCAAGGTAAACAACACGATCACCGTAGAGCAA------------------GCGTCC---GGG-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTCAAGTCCGGACAGACGATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................ATTGCCGACGCCATTACCGCGGGG...........................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8
.....................................................................................................................................................................................................................CAGACGATCAGCCTGGCGGAGGC..........................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACCTCATCCGGCACGAGTCGGT......................	22	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
....TAGCGAAGCGGAATCCGGTTACGA..........................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.GATTAGCGAAGCGGAATCCG.................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
.........................................CGGATCAAGGTAAACAACAC.........................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
........................ACGAGACGGCTGAGAAGCGGAT........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GTCAAGTCCGGACAGACGATCA.......................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCAAGACCGGCCTGTAT................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AGACGATCAGCCTGGCGGA.............................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................GACGCCATTACCGCGGGGAGTG.......................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................CAGACGATCAGCCTGGCG...............................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAAGACCGGCCTGTATCGCGT...........................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................CACCAAGACCGGCCTGTAT................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CGCGGCTACCTCATCCGGC................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACGATCAGCCTGGCGGA.............................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................GCCATTACCGCGGGGAGTGTGGA...................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CGGCACGAGTCGGTGACAATCAAGTCG.........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GCGCGGCTACCTCATCCGGC................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTCAAGTCCGGACAGACGATCAGCCTGGC................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CGGTGACAATCAAGTCGAATGCGCT.	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................ACGAGTCGGTGACAATCAAGT...........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................AAACAACACGATCACCGTAGAGCAA------------------G......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................GCGGCTACCTCATCCGGC................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................TAAACAACACGATCACCGTAGAGCAA------------------GC.....................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GTCAAGTCCGGACAGACGATCAGC.....................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GCGGCTACCTCATCCGGCACGAGTCG........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................GCACGAGTCGGTGACAATCAAG............	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GAGGCCTACGAGCGCGGCTACCT........................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GAAGCGGAATCCGGTTACGAGACGGCT...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................CCGGACAGACGATCAGCCTGGCGGAGGC..........................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CATCCGGCACGAGTCGGTGACAATCAAGT...........	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GATCAGCCTGGCGGAGGC..........................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GGCTGAGAAGCGGATCAAGGT..................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATTACCGCGGGGAGTGTGGACAC................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATCCGGCACGAGTCGGTGACAATCAAGT...........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................CGGCTGAGAAGCGGATCAAGGT..................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................CGGACAGACGATCAGCCTGGC................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAATCAAGTCGAATGCGCC.	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GGCACGAGTCGGTGACAATCAAGTCGAAT......	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AGATAAGCGAAGCGGAATCCGGTTACGAGACGGCCGAGAAGCGGATCAAGGTAAACAACACGGTCACCGTAGAGCAA------------------ACGTCC---GGG-G------AGCTG---GGCTCTCCCGAGAATCCACGCAACATTGCCGACGCCATTACCGCGGGGAGTGTGGACACCAAGACCGGCCTGTATCGCGTGAAATCCGGACAGACTATCAGCCTGGCGGAGGCCTACGAGCGCGGCTACCTCATCCGGCACGAGTCGGTGACAATCAAGTCGAATGCGCTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................ACGAGTCGGTGACAATCAAGTCGA........	24	1	2.00	2	0	0	0	1	0	1	0
..........................................................CACGGTCACCGTAGAGCAA------------------ACGTCC---GG............................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2
....................GGTTACGAGACGGCCGAGAAGC............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................CTATCAGCCTGGCGGAGGCCTACGAGCGC................................................	29	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................GCGGGGAGTGTGGACACCAAGACC.........................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
....................................................................GTAGAGCAA------------------ACGTCC---GGG-G------...................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..................CCGGTTACGAGACGGCCGAGAA..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...................................................................CGTAGAGCAA------------------ACGTCC---GGG-..........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................AGACTATCAGCCTGGCGGAGGC..........................................................	22	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................GACTATCAGCCTGGCGGAGGC..........................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................AGAGCAA------------------ACGTCC---GGG-G------A..................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................GACGCCATTACCGCGGGGAGTGTGGA...................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.........AAGCGGAATCCGGTTACGA..........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CCTCATCCGGCACGAGTCGGT......................	21	1	1.00	1	0	0	0	0	1	0	0
....................GGTTACGAGACGGCCGAGA...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................GGTGACAATCAAGTCGAATGCGCT.	24	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................GGACACCAAGACCGGCCTGT..................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................GGCACGAGTCGGTGACAATCAAGT...........	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GGCTACCTCATCCGGCACGAGTCGGT......................	26	1	1.00	1	0	0	0	0	1	0	0
.................................................GGTAAACAACACGGTCACCGTAGAGC...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................GTATCGCGTGAAATCCGGACA...............................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................CTGTATCGCGTGAAATCCGGACAGAC............................................................................	26	1	1.00	1	0	1	0	0	0	0	0
..................................CGAGAAGCGGATCAAGGT..................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................CGCGTGAAATCCGGACAGA.............................................................................	19	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................CACGCAACATTGCCGACGCC.......................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................GACAGACTATCAGCCTGGCGGAGG...........................................................	24	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................GTATCGCGTGAAATCCGGACAGACTATC........................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAATCAAGTCGAATGCGCT.	19	1	1.00	1	0	0	0	1	0	0	0
..............................................CAAGGTAAACAACACGGTCACCGTAGA.............................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................GGACAGACTATCAGCCTGGCGGAG............................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................CTCCCGAGAATCCACGCAACATTGC..............................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................ATCCACGCAACATTGCCGA...........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................GGCACGAGTCGGTGACAATCAA.............	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................CACCAAGACCGGCCTGTATCGCGT...........................................................................................	24	1	1.00	1	0	0	0	1	0	0	0

dpe_1571

scaffold_4:1970757-1970907 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.1	-36.8	-36.2