dpe_1558

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGAGCAGGCGAGCAGGCGGCAGAAGGCGCCGTGGGGGGATCTGCAACAGAGTTGAACATCAAGCCGGAACCGGTTACCCCCAGCAAGGTGCAGCACCTGATGAGCGAGGATTGGAACATGAAGCTGGGCCTGCAGATCATCTCGAACTCGTTGCTCAAGGAGCGATTGATGAACACCATGCCATTTGCTTATAACAACAATTAAAAGGAGAACGCCTATCAGAGCAACCAAAGTCATATGTCCTGTCCCCC ************************************************************************************************..(((((((.((((.((..((((..(((......))).)))).)).)).)).))))))).........................*******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	M042 female body	V111 male body	V057 head
...........................................................................................................................................................CAAGGAGCGATTGATGAACACCATGCC.....................................................................	27	0	1	3.00	3	3	0	0	0
...........................................................................................................................................TCTCGAACTCGTTGCTCAAGGAGCGAT.....................................................................................	27	0	1	3.00	3	3	0	0	0
............................................................................................................................................................AAGGAGCGATTGATGAACACCATGCC.....................................................................	26	0	1	2.00	2	2	0	0	0
............CAGGCGGCAGAAGGCGCC.............................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0
............................................................................................................................................................AAGGAGCGATTGATGAACACC..........................................................................	21	0	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................CTATCAGAGCAACCAAAGTCATATGTC.........	27	0	1	1.00	1	0	1	0	0
..................................................................................................................................................................CGATTGATGAACACCATGCCATTTGCTTA............................................................	29	0	1	1.00	1	0	1	0	0
..............................................................................................................................................................GGAGCGATTGATGAACACCATG.......................................................................	22	0	1	1.00	1	0	0	1	0
.................................................AGTTGAACATCAAGCCGGAAC.....................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
..................................................................................................GATGAGCGAGGATTGGAACAT....................................................................................................................................	21	0	1	1.00	1	1	0	0	0
....................AGATGGCGTGGTGGGGGGATC..................................................................................................................................................................................................................	21	3	4	0.25	1	0	0	0	1
...........................................................................................ATCACGTGTTGAGCGAGGA.............................................................................................................................................	19	3	20	0.05	1	0	1	0	0

CCTCGTCCGCTCGTCCGCCGTCTTCCGCGGCACCCCCCTAGACGTTGTCTCAACTTGTAGTTCGGCCTTGGCCAATGGGGGTCGTTCCACGTCGTGGACTACTCGCTCCTAACCTTGTACTTCGACCCGGACGTCTAGTAGAGCTTGAGCAACGAGTTCCTCGCTAACTACTTGTGGTACGGTAAACGAATATTGTTGTTAATTTTCCTCTTGCGGATAGTCTCGTTGGTTTCAGTATACAGGACAGGGGG *******************************************************************..(((((((.((((.((..((((..(((......))).)))).)).)).)).))))))).........................************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V111 male body	M042 female body
..............................................................................................................................GCGGACGTCTAGTAGACCTAG........................................................................................................	21	3	1	1.00	1	0	1	0
....................................................................................................................................................................................................................GCGCATAGTCTAGTGGGTTTC..................	21	3	2	0.50	1	1	0	0
..................................................................................CGTTCAACGTCGTGGAATA......................................................................................................................................................	19	2	2	0.50	1	0	0	1
................................................CTCTACTTGTAGTTGGGCGTT......................................................................................................................................................................................	21	3	3	0.33	1	1	0	0
....................................................................................................................................................................................................................GGGAATAGTCTCGTGGGTTTC..................	21	3	3	0.33	1	1	0	0
..................................................................CTTGGCCACTGGGGGACG.......................................................................................................................................................................	18	2	5	0.20	1	1	0	0
........................................................................CAATGGTGGTCGATCCAAGT...............................................................................................................................................................	20	3	5	0.20	1	1	0	0
...................................................................TTGGCCAATGGGCATGGTT.....................................................................................................................................................................	19	3	6	0.17	1	0	0	1
.....................................................................................................................................................................................................................CGAATAGTCTCTTGGGTTTC..................	20	3	11	0.09	1	1	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_4:567398-567648 -	dpe_1558	GGAGC---AGGCG-AG---------CAGG--------------CGGCAGAAGG---CGCC------------------GTGGG---GGGATCTGCAACAGAGTTG---AACATCAAGCCGGAACCGGTTACCCCCAGCAAGGTGCAGC------ACCTGATGAGCGAGGATTGGAACATGAAGCTGGGCCTGCAGATCATCTCGAACTCGTTGCTCAAGGAGCGATTGATGAACACCATGCCATTTGCTTATAACAACAATTAAAAGGA---GAACGCCTATCAGAGCAACCAAAGTCATATGTCCTGTCCCCC----------------------------
dp5	3:16197314-16197564 +		GGAGC---AGGCG-AG---------CAGG--------------CGGAAGAAGG---CGCC------------------GTGGG---GGGATCTGCAACAGAGTTG---AACATCAAGCCGGAACCGGTTACCCCCAGCAAGGTGCAGC------ACCTGATGAGCGAGGATTGGAACATGAAGCTGGGCCTGCAGATCATCTCGAACTCGTTGCTCAAGGAGCGATTGATGAACACCATGCCATTTGCTTATAACAACAATTAAAAGGA---GAACGCCTATCAGAGCAACCAAAGTCATATGTCCTGTCCCCC----------------------------
droWil2	scf2_1100000004382:309663-309858 -		GCAGA---AGACG-AA---------GAGT--------------CATC------GGC---AGA------GG---CCACAGGAGG---TGACATTGTTG---------------TAAAACCAGAACCTGTTACACCCGGCAAGGTTCAAC------ATTTGATGGATGAGGAGTGGAATATGAAGCTGGGCCTGCAAATCATATCGAATTCATTGCTCAAGGAGCGTTTGATGAATACCATGCCATTTGCTTATAACAATAACTAAA-----------------------------------------------------------------------------
droVir3	scaffold_12875:16391623-16391821 -		ACAGC---GGGC----A---GC---GT--------------CGC---------GGA---ATT------GG---CCG---------------CTGCCGCTGAGCTG---GCCATCAAGGCGGAGCCGGTGACGCCGGGCAAGGCGCAGCCGCATCATTTGCTTGACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCTTGATGAATACAATGCCATTTGCGTACAACAATAACTGAA-----------------------------------------------------------------------------
droMoj3	scaffold_6496:7371143-7371350 +		GCAGC---GGCA------ACA----GT-----TGGAGCCATTGATGA------------GTT------GG---CT---------------GCTGCCGCTGAGCTG---GGCATCAAGGCGGAGCCAGTGACACCAGGAAAGGCGCAGCCGCATCATCTGCTCGACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGTTTGATGAATACCATGCCATTTGCGTACAACAATAACTGAA-----------------------------------------------------------------------------
droGri2	scaffold_15245:5240114-5240323 -		GATGC---AAAA----GTCGTC---GG--TAGTGG------AGCTG---------A---A------------------ATGGC---AGCAGCTGCCGCTGAGCTG---GGCATCAAAGCGGAGCCGGTATCACCGGGCAAGGCGCAGCCGCATCATCTGCTGGACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCTTGATGAACACTATGCCATTTGCGTACAACAATAACTAA------------------------------------------------------------------------------
droAna3	scaffold_13266:17882865-17883069 -		GGGAC---AG------GACGAG---GA--------------TGAGGATGA---GGCAGCC------------------------------------GGGGAGCTGAGGAGCATCAAGCCCGAGCCGGTGACGCCCGGCAAGGTGCAGC------ACCTGCTGAACGAGGAGTGGAACATGAAGCTGGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCCTGATGAACACGATGCCCTTTGCCTACAACAACAACTAGGACTAGGAGC-----TC-------------------------------------------------------------
droBip1	scf7180000396735:1145276-1145462 -		AGGC---GGCC----------------------------------------------------------------------GC---CGAGGCTGCCGGAGAGCTG---AGCATCAAGCCCGAGCCGGTGACGCCCGGCAAGGTGCAGC------ACCTGCTGAACGAGGAGTGGAACATGAAGCTGGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCCTGATGAACACGATGCCCTTCGCCTACAACAATAACTAAG-----GAGC-----------------------CAT------------------------------------------
droKik1	scf7180000302406:127704-127934 -		GGGGT---AGCC----G---------A--------------CGATGACGA---GGC---GGTCGCTGTGG---CCGAGGCAGC---CGCCGCGGCAGCAGCATTG---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGCAGCACCATCTAATGAACGAGGAGTGGAACATGAAGCTGGGTCTGCAGATAATATCGAATTCGTTGCTCAAGGAGCGACTGATGAACACGATGCCATTTGCTTACAACAATAACTAAG--------C-----TCTCT-------------------------CTTAC----------------------------
droFic1	scf7180000454066:1274348-1274603 +		TCGAC---ATGCGGTGGACGCC---GA--------------TGATGCGGA---GGCATCATT------GGTTGCCGCACAAGC---CGAGGCTGCAGCAGCACTC---GGGATCAAGCCGGAACCGGTGACGCCCGGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGACTGATGAACACGATGCCATTTGCTTACAACAATAACTAAG-----CAGCACC----TCAACCCAACCCAA--CAT---------CCCCC-------------------------TTC
droEle1	scf7180000491349:1045502-1045747 +		GGAC---GAACA-GTGGACCCC---GA--------------CGATGAGGA---GGC---GTT------GG---CCGCACAAGCCGCCGAGGCTGCTGCAGCACTT---GGCATCAAACCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGTCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGATTAATGAACACTATGCCATTTGCTTATAACAATAACTAAG--------C-----TCTCTCGACGACTATAGCTATAT----------------------------AT----------
droRho1	scf7180000779999:356006-356245 +		GGAC---GACCA-GTAGACACC---GA--------------CGAAGAGGA---GGC---GTT------GG---CCGCACAAGC---CGAGGCTGCCGCAGCCCTT---GGCATCAAACCGGAGCCGGTTACGCCCAGCAAGGTGCAGC------ACTTGATGTCCGAGGAGTGGAACATGAAGCTGGGCCTGCAGATCATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAATAACTAAG--------C-----TCTTT---CGACTATAGCTATAT----------------------------AT----------
droBia1	scf7180000301506:106640-106876 -		GGAGGACGACCC-TTGGACGCC---GA--------------CGAGGAGGC---GGC---ACT------GG---CCGCACAAGC---CGAGGCTGCAGCAGCGCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATTATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTACAACAATAACTAAG--------C-----T-------CGACTCTAGTTATAG----------------------------------------
droTak1	scf7180000415683:31281-31524 +		GGAC---GACCC-TTGGACGCC---GA--------------CGAGGAAGA---GGC---ATT------GG---CCGCACAAGC---CGAGGCTGCTGCAGCTCTT---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATTATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTATAACAATAACTAAG--------C-----TGTCC---CGACTCTAGTTATAT----------------------------AT------ATAA
droEug1	scf7180000409672:4605487-4605737 +		GGAGC---AGGA----GATGAC---GA--------------TGATGATGC---GGC---TTT------GG---CCGCACAAGC---CGAGGCTGCTGCAGCACTT---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGTCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTATAACAATAACTAAG--------C-----TAT---------------------------CCCCCGACTATATAGCTATATATATATATATTA
dm3	chr2R:6407898-6408114 -		GGAA---GATCC-GAAGTCGAT---GA--------------CGAAGACGA---GAC---ATT------GG---CCGCACAAGC---CGAGGCTGTCGCAGCTCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAACAACTAAA-----------------------------------------------------------------------------
droSim2	2r:7175889-7176105 -		GGAA---GATCC----GACGCCGATGA--------------GGATGACGA---GAC---GTT------GG---CCGCACAAGC---CGAGGCTGTCGCAGCTCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAACAACTAAA-----------------------------------------------------------------------------
droSec2	scaffold_1:4019327-4019543 -		GGAA---GATCC----GACGCCGATGA--------------GGATGACGA---GAC---GTT------GG---CCGCACAAGC---CGAGGCTGTCGCAGCTCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAACAACTAAA-----------------------------------------------------------------------------
droYak3	2R:2732862-2733077 +		GGAA---GACCC-GAGGACGCA---GA--------------TGATAACGA---AGC---GTT------GG---CCGCACAAGC---CGAGGCTGCTGCAGCTCTT---GGCATCAAACCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTATAACAATAACTAA------------------------------------------------------------------------------
droEre2	scaffold_4845:19344230-19344456 +		GGAGGACGACCC-GAGGACGCT---GA--------------TGATGACGAGGCGGC---GTT------GG---CTGCACAAGC---CGAGGCTGTTGTAGCACTT---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAATAACTAAG--------C--------------GAC---------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

GGAGC---AGGCG-AG---------CAGG--------------CGGCAGAAGG---CGCC------------------GTGGG---GGGATCTGCAACAGAGTTG---AACATCAAGCCGGAACCGGTTACCCCCAGCAAGGTGCAGC------ACCTGATGAGCGAGGATTGGAACATGAAGCTGGGCCTGCAGATCATCTCGAACTCGTTGCTCAAGGAGCGATTGATGAACACCATGCCATTTGCTTATAACAACAATTAAAAGGA---GAACGCCTATCAGAGCAACCAAAGTCATATGTCCTGTCCCCC----------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................CAAGGAGCGATTGATGAACACCATGCC....................................................................................................	27	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................TCTCGAACTCGTTGCTCAAGGAGCGAT....................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
........................................................................................................................................................................................................................AAGGAGCGATTGATGAACACCATGCC....................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.........................CAGG--------------CGGCAGAAGG---CGCC------------------........................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................AAGGAGCGATTGATGAACACC.........................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CTATCAGAGCAACCAAAGTCATATGTC.....................................	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................CGATTGATGAACACCATGCCATTTGCTTA...........................................................................................	29	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................GGAGCGATTGATGAACACCATG......................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................AGTTG---AACATCAAGCCGGAAC..........................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................GATGAGCGAGGATTGGAACAT...................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

dp5

GGAGC---AGGCG-AG---------CAGG--------------CGGAAGAAGG---CGCC------------------GTGGG---GGGATCTGCAACAGAGTTG---AACATCAAGCCGGAACCGGTTACCCCCAGCAAGGTGCAGC------ACCTGATGAGCGAGGATTGGAACATGAAGCTGGGCCTGCAGATCATCTCGAACTCGTTGCTCAAGGAGCGATTGATGAACACCATGCCATTTGCTTATAACAACAATTAAAAGGA---GAACGCCTATCAGAGCAACCAAAGTCATATGTCCTGTCCCCC----------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................TGAGCGAGGATTGGAACATGAAGC..............................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	7	0
..........................................................................................................................................................................TTGGAACATGAAGCTGGGCCTGCAGA..................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	5	0	0
..............................................................................................................................................................GATGAGCGAGGATTGGAACATGAAGC..............................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	1	2	0
.....................................................................................................................................................................GAGGATTGGAACATGAAGCTGGGC.........................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................................................................GAGGATTGGAACATGAAGCTGGG..........................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGAACTCGTTGCTCAAGGAGC.......................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................ACAGAGTTG---AACATCAAGCCGGAACC.........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................AGGTGCAGC------ACCTGATGAGCGA...............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................TGATGAGCGAGGATTGGAACATGAA................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................CATGAAGCTGGGCCTGCAGATC................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGCAGATCATCTCGAACTCGTTGC................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................TGAGCGAGGATTGGAACATGAAG...............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAAGGAGCGATTGATGAACACCATGCC....................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TGCTTATAACAACAATTAAAAGGA---G.....................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................G---AACATCAAGCCGGAACCGGTTACCCCCA..............................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GATGAACACCATGCCATTTG...............................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CAACAATTAAAAGGA---GAACGCCTATCAG.........................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................GATGAGCGAGGATTGGAACATGA.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droWil2

GCAGA---AGACG-AA---------GAGT--------------CATC------GGC---AGA------GG---CCACAGGAGG---TGACATTGTTG---------------TAAAACCAGAACCTGTTACACCCGGCAAGGTTCAAC------ATTTGATGGATGAGGAGTGGAATATGAAGCTGGGCCTGCAAATCATATCGAATTCATTGCTCAAGGAGCGTTTGATGAATACCATGCCATTTGCTTATAACAATAACTAAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................ATTGCTCAAGGAGCGTTTGATG...............................................................................................................	22	1	1.00	1	0	1	0	0	0
...........................................................................................TTGTTG---------------TAAAACCAGAACCTGTTACACCC...............................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................GATGGATGAGGAGTGGAATATGAAG...............................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
..............................................................................GGAGG---TGACATTGTTG---------------TAAAA.................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................CATTGCTCAAGGAGCGTTTGATGAATACC.........................................................................................................	29	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................TGCTCAAGGAGCGTTTGATGAATACC.........................................................................................................	26	1	1.00	1	0	0	1	0	0
.........................................................................CCACAGGAGG---TGACATTGTTG---------------TAAAACC...............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0

droVir3

ACAGC---GGGC----A---GC---GT--------------CGC---------GGA---ATT------GG---CCG---------------CTGCCGCTGAGCTG---GCCATCAAGGCGGAGCCGGTGACGCCGGGCAAGGCGCAGCCGCATCATTTGCTTGACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCTTGATGAATACAATGCCATTTGCGTACAACAATAACTGAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................ATTGCTCAAGGAGCGCTTGAT................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
................................................................................................................................................................................................................CATTGCTCAAGGAGCGCTTGAT................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................AGGAGCGCTTGATGAATAC..........................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CCATCAAGGCGGAGCCGGTG.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........C----A---GC---GT--------------CGC---------GGA---ATT------GG---CCG---------------CT.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGGCGGAGCCGGTGACGCCGGGCAA..........................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................A---GC---GT--------------CGC---------GGA---ATT------GG---CCG---------------CTGC.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GATGAATACAATGCCATTTGCGTACAAC.......................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCTCAAGGAGCGCTTGATGA..............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................C---GT--------------CGC---------GGA---ATT------GG---CCG---------------CTGCC......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CTGAGCTG---GCCATCAAGGCGGAGCCGGT......................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GCCGCATCATTTGCTTGACGAGGAGTG.........................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................A---GC---GT--------------CGC---------GGA---ATT------GG---CCG---------------CT.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................T------GG---CCG---------------CTGCCGCTGAGCTG---GCCA......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AATGCCATTTGCGTACAACAATA...................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATCAAGGCGGAGCCGGTGACGC.................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GT--------------CGC---------GGA---ATT------GG---CCG---------------CTGCCGC....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................G---GCCATCAAGGCGGAGCCGGTG.....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AATACAATGCCATTTGCGTAC..........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CGCTTGATGAATACAATGCCATTTGCGT............................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCTCAAGGAGCGCTTGATG...............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATTTGCTTGACGAGGAGT..........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CG---------------CTGCCGCTGAGCTG---GCC.......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CGGAGCCGGTGACGCCGGGCAAGGC.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CGAGGAGTGGAACATGAAGCTCGGC.........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................GACGAGGAGTGGAACATGAAGCT.............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATATCGAATTCATTGCTCAAGGAGCC......................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CATGAAGCTCGGCCTGCAGATCATA.............................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAATACAATGCCATTTGCGTA...........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TTGCTCAAGGAGCGCTTGATGT..............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CGGTGACGCCGGGCAAGGCGC.....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GAGCCGGTGACGCCGGGCAAGG........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ATTTGCTTGACGAGGAGTGGAA......................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GGAGTGGAACATGAAGCTC............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GAGTGGAACATGAAGCTCGGC.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CTGCAGATCATATCGAATTC.....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTCATTGCTCAAGGAGCGCTTGA.................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GATGAATACAATGCCATTTGCGTAC..........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CCG---------------CTGCCGCTGAGCTG---GC........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................A---ATT------GG---CCG---------------CTGCCGCTGA.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................ACGAGGAGTGGAACATGAAGCT.............................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCTTGATGAATACAATGCCATTTGCGT............................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................A---ATT------GG---CCG---------------CTGCCGCTGAGCT..............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAGC---GGCA------ACA----GT-----TGGAGCCATTGATGA------------GTT------GG---CT---------------GCTGCCGCTGAGCTG---GGCATCAAGGCGGAGCCAGTGACACCAGGAAAGGCGCAGCCGCATCATCTGCTCGACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGTTTGATGAATACCATGCCATTTGCGTACAACAATAACTGAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................TCATATCGAATTCATTGCTCAAGGAG........................................................................................................................	26	1	4.00	4	3	0	0	0	1	0
....................................................................................................................................................................................................TCATATCGAATTCATTGCTCAAGG..........................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................TCATATCGAATTCATTGCTCAAGGAGCGT.....................................................................................................................	29	1	3.00	3	1	0	0	0	2	0
....................................................................................................................................................................................................TCATATCGAATTCATTGCTCAAGGAGC.......................................................................................................................	27	1	3.00	3	1	0	0	0	2	0
..................................................................................................TGAGCTG---GGCATCAAGGCGGAGCCAG.......................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................TCATATCGAATTCATTGCTCAAGGA.........................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................TGAATACCATGCCATTTGCGTACAAC.......................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TACCATGCCATTTGCGTACAACAATAACT................................................................................	29	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................GAAGCTCGGCCTGCAGATC................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................GTT------GG---CT---------------GCTGCCGCTGAGCTG---..........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................................................................................CATATCGAATTCATTGCTCAAGGAGCGTT....................................................................................................................	29	1	1.00	1	0	0	0	0	1	0
....................................................................GG---CT---------------GCTGCCGCTGAGCTG---..........................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................GCGCAGCCGCATCATCTGCT.....................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................CTCAAGGAGCGTTTGATGAATACCA........................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................ATATCGAATTCATTGCTCAAGGAG........................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................CATTGCTCAAGGAGCGTTTGATGA..............................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droGri2

GATGC---AAAA----GTCGTC---GG--TAGTGG------AGCTG---------A---A------------------ATGGC---AGCAGCTGCCGCTGAGCTG---GGCATCAAAGCGGAGCCGGTATCACCGGGCAAGGCGCAGCCGCATCATCTGCTGGACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCTTGATGAACACTATGCCATTTGCGTACAACAATAACTAA------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

GGGAC---AG------GACGAG---GA--------------TGAGGATGA---GGCAGCC------------------------------------GGGGAGCTGAGGAGCATCAAGCCCGAGCCGGTGACGCCCGGCAAGGTGCAGC------ACCTGCTGAACGAGGAGTGGAACATGAAGCTGGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCCTGATGAACACGATGCCCTTTGCCTACAACAACAACTAGGACTAGGAGC-----TC-------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................GAG---GA--------------TGAGGATGA---GGCAGC...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
GGGAC---AG------GACGAG---GA--------------TGAGGA.......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................GCGCCTGATGAACACGATGCCCTTTG...............................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................CAAGGAGCGCCTGATGAACA...........................................................................................................	20	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................GCTCAAGGAGCGCCTGATGAACAC..........................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................GCCTGATGAACACGATGCCCTTTGCCTA...........................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................GCCTGATGAACACGATGCCCTTTG...............................................................................................	24	1	1.00	1	1	0	0	0	0	0
GGGAC---AG------GACGAG---GA--------------TGAGGATGA---GGC..............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0

droBip1

AGGC---GGCC----------------------------------------------------------------------GC---CGAGGCTGCCGGAGAGCTG---AGCATCAAGCCCGAGCCGGTGACGCCCGGCAAGGTGCAGC------ACCTGCTGAACGAGGAGTGGAACATGAAGCTGGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGCCTGATGAACACGATGCCCTTCGCCTACAACAATAACTAAG-----GAGC-----------------------CAT------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGGT---AGCC----G---------A--------------CGATGACGA---GGC---GGTCGCTGTGG---CCGAGGCAGC---CGCCGCGGCAGCAGCATTG---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGCAGCACCATCTAATGAACGAGGAGTGGAACATGAAGCTGGGTCTGCAGATAATATCGAATTCGTTGCTCAAGGAGCGACTGATGAACACGATGCCATTTGCTTACAACAATAACTAAG--------C-----TCTCT-------------------------CTTAC----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGAC---ATGCGGTGGACGCC---GA--------------TGATGCGGA---GGCATCATT------GGTTGCCGCACAAGC---CGAGGCTGCAGCAGCACTC---GGGATCAAGCCGGAACCGGTGACGCCCGGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTCGGCCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGACTGATGAACACGATGCCATTTGCTTACAACAATAACTAAG-----CAGCACC----TCAACCCAACCCAA--CAT---------CCCCC-------------------------TTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGAC---GAACA-GTGGACCCC---GA--------------CGATGAGGA---GGC---GTT------GG---CCGCACAAGCCGCCGAGGCTGCTGCAGCACTT---GGCATCAAACCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGTCTGCAGATCATATCGAATTCATTGCTCAAGGAGCGATTAATGAACACTATGCCATTTGCTTATAACAATAACTAAG--------C-----TCTCTCGACGACTATAGCTATAT----------------------------AT----------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGAC---GACCA-GTAGACACC---GA--------------CGAAGAGGA---GGC---GTT------GG---CCGCACAAGC---CGAGGCTGCCGCAGCCCTT---GGCATCAAACCGGAGCCGGTTACGCCCAGCAAGGTGCAGC------ACTTGATGTCCGAGGAGTGGAACATGAAGCTGGGCCTGCAGATCATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAATAACTAAG--------C-----TCTTT---CGACTATAGCTATAT----------------------------AT----------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGAGGACGACCC-TTGGACGCC---GA--------------CGAGGAGGC---GGC---ACT------GG---CCGCACAAGC---CGAGGCTGCAGCAGCGCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATTATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTACAACAATAACTAAG--------C-----T-------CGACTCTAGTTATAG----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGAC---GACCC-TTGGACGCC---GA--------------CGAGGAAGA---GGC---ATT------GG---CCGCACAAGC---CGAGGCTGCTGCAGCTCTT---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATTATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTATAACAATAACTAAG--------C-----TGTCC---CGACTCTAGTTATAT----------------------------AT------ATAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGAGC---AGGA----GATGAC---GA--------------TGATGATGC---GGC---TTT------GG---CCGCACAAGC---CGAGGCTGCTGCAGCACTT---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGTCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTATAACAATAACTAAG--------C-----TAT---------------------------CCCCCGACTATATAGCTATATATATATATATTA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGAA---GATCC-GAAGTCGAT---GA--------------CGAAGACGA---GAC---ATT------GG---CCGCACAAGC---CGAGGCTGTCGCAGCTCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAACAACTAAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................CAAGGAGCGATTGATGAACACTATGC.....................................................................................................	26	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TGATGAACGAGGAGTGGAACATGAAGC..............................................................................................................................................................	27	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................AAGGAGCGATTGATGAACACTATGCC....................................................................................................	26	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ACCTGATGAACGAGGAGTGGAACAT...................................................................................................................................................................	25	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................GATGAACGAGGAGTGGAACATGAAGC..............................................................................................................................................................	26	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........ATCC-GAAGTCGAT---GA--------------CGAAGA.......................................................................................................................................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................TGAACGAGGAGTGGAACATGAAGCT.............................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................GAGTGGAACATGAAGCTGGGC.........................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................CATGAAGCTGGGCCTACAGATCATA.............................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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GGAA---GATCC-GAAGTCGAT---GA--------------CGAAGA.......................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTGATGAACGAGGAGTGGAAC.....................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................CCTGATGAACGAGGAGTGGA.......................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................GAGGAGTGGAACATGAAGCTGGGC.........................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................GCCCAGCAAGGTGCAGC------ACCTGATGAAC.................................................................................................................................................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TGCAGC------ACCTGATGAACGAGGAGTGGA.......................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................GGTGCAGC------ACCTGATGAACG................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CACAAGC---CGAGGCTGTCGCAGCTC...............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGGAGTGGAACATGAAGCTGGG..........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................C------ACCTGATGAACGAGGAGTGGAAC.....................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CATTGCTCAAGGAGCGATTGAT................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AGC------ACCTGATGAACGAGGAGTGGAAG.....................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTCATTGCTCAAGGAGCGATTGATG...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGAA---GATCC----GACGCCGATGA--------------GGATGACGA---GAC---GTT------GG---CCGCACAAGC---CGAGGCTGTCGCAGCTCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAACAACTAAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................CTGTCGCAGCTCTC---GGC.......................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................TGAACGAGGAGTGGAACATGAAGCTG............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACAGATCATATCGAATTCATTGCT...............................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCTCAAGGAGCGATTGATGAACACT.........................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CAAGC---CGAGGCTGTCGCAGCTCTC---GG........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GAACATGAAGCTGGGCCT.......................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................ACCTGATGAACGAGGAGTGGAACA....................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ACCTGATGAACGAGGAGTGGAAC.....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGAACGAGGAGTGGAACATGAAGCTGGGC.........................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................ATGACGA---GAC---GTT------GG---CCGCACA......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAAGGAGCGATTGATGAACACTATGC.....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGAGCGATTGATGAACACT.........................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CCTACAGATCATATCGAATTCATTGCTCAA............................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GCGATTGATGAACACTATGCCATTTGC..............................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TCATATCGAATTCATTGCTCAAGGAGC.......................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................GATGACGA---GAC---GTT------GG---CCGCACAAGC---CGA.............................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TGATGAACGAGGAGTGGAACATGAAGC..............................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................GATGA--------------GGATGACGA---GAC---GTT------GG---CCGC.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................CCTGATGAACGAGGAGTGGAACA....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGGAGTGGAACATGAAGCTGG...........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGAACGAGGAGTGGAACATGAAGCTGG...........................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TCATTGCTCAAGGAGCGATTGATG...............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................AGCCGGAACCGGTGACGCCC...............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................TACAGATCATATCGAATTCATTGC................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACAGATCATATCGAATTCATTGCTC..............................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GAGCGATTGATGAACACTATGC.....................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................CAGCAAGGTGCAGC------ACCTGATGAACGA...............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................CATATCGAATTCATTGCT...............................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

GGAA---GATCC----GACGCCGATGA--------------GGATGACGA---GAC---GTT------GG---CCGCACAAGC---CGAGGCTGTCGCAGCTCTC---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAACAACTAAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................CGCCGATGA--------------GGATGACGA---GAC---GTT------G.................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
................GACGCCGATGA--------------GGATGACGA---GAC---...........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

droYak3

GGAA---GACCC-GAGGACGCA---GA--------------TGATAACGA---AGC---GTT------GG---CCGCACAAGC---CGAGGCTGCTGCAGCTCTT---GGCATCAAACCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCAAATTCATTGCTCAAGGAGCGATTGATGAACACGATGCCATTTGCTTATAACAATAACTAA------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................TGAACGAGGAGTGGAACATGAAGCTGG...........................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TATCAAATTCATTGCTCAAGGAGCGAT....................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TGCAGC------ACCTGATGAACGAGGAGTG.........................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................TGCAGCTCTT---GGCATCAAACCGGAAC..........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................CACAAGC---CGAGGCTGCTGCAGCTCT..............................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...A---GACCC-GAGGACGCA---GA--------------TG...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGAACGAGGAGTGGAACATGAAGCT.............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................CTGCAGCTCTT---GGCATCAAAC................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAAGGAGCGATTGATGAACACGATGCC....................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................TGAACGAGGAGTGGAACATGAAGC..............................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................TT---GGCATCAAACCGGAACCGGTGACGC.................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GATTGATGAACACGATGCCATTTGCC.............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GGAGGACGACCC-GAGGACGCT---GA--------------TGATGACGAGGCGGC---GTT------GG---CTGCACAAGC---CGAGGCTGTTGTAGCACTT---GGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGCAGC------ACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTATAACAATAACTAAG--------C--------------GAC---------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................TGTTGTAGCACTT---GGCATCAAGCCGG.............................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......GACCC-GAGGACGCT---GA--------------TGATGACGAG...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1
............................................................TT------GG---CTGCACAAGC---CGAGGCTGTTGTA...................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................TCATATCGAATTCATTGCTCAAGGAGCG......................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
............................................................TT------GG---CTGCACAAGC---CGAGGCTGTTGTAG..................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.......GACCC-GAGGACGCT---GA--------------TGATGACGAGGCGGC---...........................................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	1
................................................................................................................................................................TGAACGAGGAGTGGAACAT...................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................TGATGAACGAGGAGTGGAACATGAAGC..............................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................ACGAGGAGTGGAACATGAAGCT.............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....GACGACCC-GAGGACGCT---GA--------------TGATGACGAG...................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1
..............................................................................................................................................................................................TACAGATCATATCGAATTCATTGCT...............................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................ATCAAGCCGGAACCGGTGACGCCC...............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...........................................ATGACGAGGCGGC---GTT------GG---.............................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.........................................................................CTGCACAAGC---CGAGGCTGTTGTAGCA................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..................................................GGCGGC---GTT------GG---CTGCACAAGC---CGAGG...........................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

dpe_1558

scaffold_4:567448-567598 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.5	-18.9	-18.7