ID:

dpe_1554

 Coordinate:

scaffold_4:340286-340339 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL17284-cds]; exon [dper_GLEANR_19090:3]; CDS [Dper\GL17284-cds]; exon [dper_GLEANR_19090:2]; intron [Dper\GL17284-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------##################################################
TAACAGTAACTCTGATGATGACCAAAAGACTGATTTTTTTCTATACACACGTGAGTACTAAACGTCTCAATCTATTTTTCTCTATTAATATTGGTTTATTATAGAATCTAAGACTGCCTGGCGGGTGCCAATGGTACTTGAAAGACCAATCAAA
**************************************************.......(((.........................(((((......))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V111
male body
..............ATGATGACCAAAAGACTGATT....................................................................................................................... 21 0 1 2.00 2 2 0
..ACAGTAACTCTGATGATTAC.................................................................................................................................... 20 1 1 1.00 1 1 0
..ACAGTAACTCTGATGATGAC.................................................................................................................................... 20 0 1 1.00 1 1 0
..........TCTGATGATGACCAAAAGACTGATT....................................................................................................................... 25 0 1 1.00 1 1 0
..............................................................................................................................GCCAATGGGACTTGAAGG.......... 18 2 3 0.67 2 0 2

Anti-sense strand reads

ATTGTCATTGAGACTACTACTGGTTTTCTGACTAAAAAAAGATATGTGTGCACTCATGATTTGCAGAGTTAGATAAAAAGAGATAATTATAACCAAATAATATCTTAGATTCTGACGGACCGCCCACGGTTACCATGAACTTTCTGGTTAGTTT
**************************************************.......(((.........................(((((......))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
.................................AAAAAAACATATGTGTGCTGT.................................................................................................... 21 3 15 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_4:340236-340389 + dpe_1554 TAACAGTAACTCTGATGATGACCAAAAGACTGATTTTTTTCTATACACACGTGAGTACTAAACGTCTCAATCTATTTTTCTCTATTAATATTGGTTTATTATAGAATCTAAGACTGCCTGGCGGGTGCCAATGGTACTTGAAAGACCAATCAAA
dp5 3:16421799-16421952 - TAACAGTAACTCTGATGATGACCAAAAGACTGATTTTTATCTATACACACGTGAGTACTAAACGTCTCAATCTATTTTTCTCTATTAACATTGGTTTATTATAGAATCCAAGACTGCCTGGCGGGTGCCAATGGTACTTGAAAGACCAATCAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TAACAGTAACTCTGATGATGACCAAAAGACTGATTTTTTTCTATACACACGTGAGTACTAAACGTCTCAATCTATTTTTCTCTATTAATATTGGTTTATTATAGAATCTAAGACTGCCTGGCGGGTGCCAATGGTACTTGAAAGACCAATCAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............ATGATGACCAAAAGACTGATT.......................................................................................................................2112.002200000
..ACAGTAACTCTGATGATGAC....................................................................................................................................2011.001100000
..........TCTGATGATGACCAAAAGACTGATT.......................................................................................................................2511.001100000
dp5
TAACAGTAACTCTGATGATGACCAAAAGACTGATTTTTATCTATACACACGTGAGTACTAAACGTCTCAATCTATTTTTCTCTATTAACATTGGTTTATTATAGAATCCAAGACTGCCTGGCGGGTGCCAATGGTACTTGAAAGACCAATCAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads

Generated: 06/08/2015 at 04:20 PM