ID:

dpe_154

 Coordinate:

scaffold_4659:1381-1440 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.3 -10.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy15-LTR_DpseLTRGypsy-
mature
  1. dpe_155  scaffold_379:3265-3285 +
  2. dpe_154  scaffold_4659:1416-1436 +
star
  1. scaffold_169:68843-68867 +
  2. scaffold_169:85096-85120 +
  3. dpe_155  scaffold_379:3234-3258 +
  4. scaffold_379:11976-12000 +
  5. scaffold_188:27242-27266 -
  6. scaffold_149:7615-7639 +
  7. scaffold_2523:5051-5075 +
  8. scaffold_244:22865-22889 +
  9. dpe_154  scaffold_4659:1385-1409 +
  10. scaffold_1476:3284-3308 +
  11. scaffold_6653:1503-1527 +

Sense Strand Reads

AAATTCGCGTACTCTTTTTGGGAATGGGAGGGGGACAGACAAGGAAAGGATCATTAGGGGTTCGGTAAGTATATTTGGGCAAATATAGTATAGAGAGGGAATAGGGATCTACCACCGCGTCGGACATCTCTGTTTTGCTGGCACGGAGTCGTGCCACGCC
***************************************...((...(((((.(((....(((......(((((((....))))))).......)))....))).))))).))........*************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V057
head
 V042
embryo
 V050
head
.....................................................................................TAGTATAGAGAGGGAATAGGG...................................................... 21 0 2 5.00 10 2 8 0 0 0 0
.....................................................................................TAGTATAGAGAGGGAATAGG....................................................... 20 0 2 3.50 7 1 6 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGTCG......... 23 0 20 2.70 54 51 1 2 0 0 0
.....................................................................................TAGTATAGAGAGGGAATAGGGA..................................................... 22 0 2 1.50 3 1 2 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGT........... 21 0 20 1.40 28 16 5 6 0 1 0
................................................................................................................................TCTGTTTTGCTGGCACGGAG............ 20 0 20 1.25 25 8 0 17 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGTCGTG....... 25 0 20 1.05 21 21 0 0 0 0 0
.....................................................................................TAGTATAGAGAGGGAATAGGGATC................................................... 24 0 2 1.00 2 2 0 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGTC.......... 22 0 20 0.90 18 9 0 9 0 0 0
.......................................................................................................................TCGGACATCTCTGTTTTGCTGGCAC................ 25 0 20 0.75 15 2 0 13 0 0 0
.....................................................................................TAGTATAGAGAGGGAATACGGATC................................................... 24 1 2 0.50 1 1 0 0 0 0 0
....................................................................................ATAGTATAGAGAGGGAATAGG....................................................... 21 0 2 0.50 1 0 1 0 0 0 0
........................................................................................................................CGGACATCTCTGTTTTGCTGGCAC................ 24 0 20 0.40 8 0 0 8 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGTCGT........ 24 0 20 0.40 8 7 1 0 0 0 0
.......................................CAAGGAAAGGATCATTAGGGGTTCGG............................................................................................... 26 0 6 0.33 2 2 0 0 0 0 0
...........................................................................................................................ACATCTCTGTTTTGCTGGCACGGAG............ 25 0 20 0.30 6 6 0 0 0 0 0
.......................................................................................................................TCGGACATCTCTGTTTTGCTGGCACGGA............. 28 0 20 0.20 4 0 0 4 0 0 0
.................................................................................................................................CTGTTTTGCTGGCACGGAGTCG......... 22 0 20 0.20 4 4 0 0 0 0 0
.......................................CAAGGAAAGGATCATTAGGG..................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0
.................................GACAGACAAGGAAAGGATCATTAGGGG.................................................................................................... 27 0 6 0.17 1 1 0 0 0 0 0
.......................................CAAGGAAAGGATCATTAGGGGTT.................................................................................................. 23 0 6 0.17 1 1 0 0 0 0 0
.......................................CAATGAAAGGATCATTAGGGGTT.................................................................................................. 23 1 6 0.17 1 1 0 0 0 0 0
..................................ACAGACAAGGAAAGGATCATTAGGGG.................................................................................................... 26 0 6 0.17 1 1 0 0 0 0 0
...........................GAGGGGGACAGACAAGGAAAGGATCA........................................................................................................... 26 0 6 0.17 1 1 0 0 0 0 0
........................................................................................................................CGGACATCTCTGTTTTGCTGGCACGGA............. 27 0 20 0.15 3 0 0 3 0 0 0
...................................................................................................................CGCGTCGGACATCTCTGTTTTGCTGG................... 26 0 20 0.15 3 1 0 2 0 0 0
......................................ACAAGGAAAGGGGCATAAGGGGT................................................................................................... 23 3 7 0.14 1 0 0 0 1 0 0
........................TGGGAGGGGGACAGACAAGGAAAGGA.............................................................................................................. 26 0 20 0.10 2 1 1 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGTGG......... 23 1 20 0.10 2 2 0 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGTCGTGC...... 26 0 20 0.10 2 1 1 0 0 0 0
..................................................................................................................CCGCGTCGGACATCTCTGTTTTGC...................... 24 0 20 0.10 2 2 0 0 0 0 0
..............................................................................................................ACCACCGCGTCGGACATCTCTGT........................... 23 0 20 0.10 2 0 0 2 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGA........... 21 1 20 0.10 2 0 0 2 0 0 0
....................................................................................................ATAGGGATCTACCACCGCGTC....................................... 21 0 10 0.10 1 1 0 0 0 0 0
........................TGGGAGGGGGACAGACAAGAA................................................................................................................... 21 1 20 0.10 2 2 0 0 0 0 0
......................................................TAGGGGTTCGGTAAGTATATTTGGG................................................................................. 25 0 11 0.09 1 1 0 0 0 0 0
......................................................TAGGGGTTCGGTAAGTATATTTGG.................................................................................. 24 0 11 0.09 1 1 0 0 0 0 0
......................................................TAGGGGTTAGGTAAGTATATTTGGGC................................................................................ 26 1 11 0.09 1 1 0 0 0 0 0
.....................................................TTAGGGGTTCGGTAAGTATATTTGGG................................................................................. 26 0 11 0.09 1 1 0 0 0 0 0
........................................................GGGGTTCGGTAAGTATATTTGGGCAAA............................................................................. 27 0 12 0.08 1 1 0 0 0 0 0
............................................................TTCGGTAAGTATATTTGGGC................................................................................ 20 0 12 0.08 1 0 0 1 0 0 0
.....................................................................................................TAGGGATCTACCACCGCGTCGGACA.................................. 25 0 18 0.06 1 1 0 0 0 0 0
....TCGCGTACTCTTTTTGGGAATGGGA................................................................................................................................... 25 0 19 0.05 1 1 0 0 0 0 0
.....CGCGTACTCTTTTTGGGAATGGGA................................................................................................................................... 24 0 19 0.05 1 1 0 0 0 0 0
.............................................................................................................................ATCTCTGTTATACTGGCTC................ 19 3 20 0.05 1 0 0 0 1 0 0
...................................................................................................................CGCGTCGGACATCTCTGTTTTGCTG.................... 25 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................TCGGACATCTCTGTTTTGCTGGCCC................ 25 1 20 0.05 1 0 0 1 0 0 0
...........................................................................................................................ACATCTCTGTTTTGCTGGCACGGAGT........... 26 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................TCTACCACCGCGTCGGACATCTCTGTTT......................... 28 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................CACATCTCTGTTTTGCTGGCACGGAG............ 26 1 20 0.05 1 1 0 0 0 0 0
........................TGGGAGGAGGACTGATAAGG.................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................TCGGACATCTCTGTTTTGCTGGCACGG.............. 27 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TCTGTTTTGCTGCCACGGAGTCG......... 23 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................TACCACCGGGTCGGACATCTCTGTTT......................... 26 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................................CGGACATCTCTGTTTTGCTGGCACGGG............. 27 1 20 0.05 1 0 0 1 0 0 0
................................................................................................................................GCTGTTTTGCTGGCACGGAGTCGT........ 24 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................TTTGCTGGCACGGAGTCGTGCCA.... 23 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................ACATCTCTGTTTTGCTGGCACCGAGT........... 26 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................................CGGACATCGCTGTTTTGCTGGTAC................ 24 2 20 0.05 1 1 0 0 0 0 0
........................TGGGAGGGGGACAGACAAGGAAAG................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
.........................GGGGGGGGGACAGACAAGGC................................................................................................................... 20 2 20 0.05 1 0 0 0 1 0 0
................................................................................................................CACCGCGTCGGACATCTCTGTTT......................... 23 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................ACCACCGCGTCGGACATCTCTGC........................... 23 1 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................CTGTTTTGCTGGCACGGAGTCGT........ 23 0 20 0.05 1 1 0 0 0 0 0
........................TGGGAGGAGGACTGACAAGGG................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0
.................................................................................................................................CTGTTTTGCTGGCACGGAGTC.......... 21 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................ACATCTCTGTTTTGCTGGCACGGA............. 24 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................CTCTGTTTTGCTGGCACGGAGTCGTG....... 26 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGTAA......... 23 2 20 0.05 1 1 0 0 0 0 0
...............................................................................................................CCACCGCGTCGGACATCTCTGTTTTGC...................... 27 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................ACATCTCTGTTTTGCTGGCACG............... 22 0 20 0.05 1 1 0 0 0 0 0
........................TGGGAGGGGGACTGATAAGGG................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0
........................TGGGAGGGGGACAGACAAGGAAAA................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAGGC.......... 22 1 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................ATCTCTGTTTTGCTGGCACGT.............. 21 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TCTGTTTTGCTGGCACGGAC............ 20 1 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................TTGCTGGCACGGAGTCGTG....... 19 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................CGCGTCGGACATCTCTGTTTTGCTGGC.................. 27 0 20 0.05 1 0 1 0 0 0 0
.........................GGGAGGGGGACAGACAAGGAAAGGA.............................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
........................TGGCAGGGGGACTGACAAGGT................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0
................................................................................................................................TCTGTTTTACTGGCACGGAGTCGT........ 24 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................CTGTTTTGCTGGCACGGAGT........... 20 0 20 0.05 1 1 0 0 0 0 0
........................TGGGAGGAGTACTGACAAGG.................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................TCGGACATCTCTCTTTTGCTGGCACGG.............. 27 1 20 0.05 1 0 0 1 0 0 0
........................TGGGAGGGGAACTGACAAGGG................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................TCTCTGTTTTGCTGGCACGGA............. 21 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................TCTCTGTTTTGCTGGCACGG.............. 20 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................CGGACATCTCTGTTTTGCTGG................... 21 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................TGCTGGCACGGAGTCGTGCAA.... 21 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TCTGTTTTACTGGCACGGAGTCGTG....... 25 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................TGTTTTGCTGGCACGGAGTCGTG....... 23 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TTTAAGCGCATGAGAAAAACCCTTACCCTCCCCCTGTCTGTTCCTTTCCTAGTAATCCCCAAGCCATTCATATAAACCCGTTTATATCATATCTCTCCCTTATCCCTAGATGGTGGCGCAGCCTGTAGAGACAAAACGACCGTGCCTCAGCACGGTGCGG
***************************************...((...(((((.(((....(((......(((((((....))))))).......)))....))).))))).))........*************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
...................................................................................................................GCGCAGCCTGTAGAGACAAAACG...................... 23 0 20 0.25 5 3 2 0
.............................................TTCCTAGTAATCCCCAAGCCATTCAT......................................................................................... 26 0 6 0.17 1 1 0 0
..........................................CCTTTCCTAGTAATCCCCAAGCCATTCAT......................................................................................... 29 0 6 0.17 1 1 0 0
.....................................................................................................................GCAGCCTGTAGAGACAAAACG...................... 21 0 20 0.15 3 2 1 0
....................................................................................................................CGCAGCCTGTAGAGACAAAACG...................... 22 0 20 0.10 2 1 0 1
.................................................................................................................TGGCGCAGCCTGTAGAGACAAAAC....................... 24 0 20 0.10 2 0 2 0
...............AAAACCCTTACCCTCCCCCT............................................................................................................................. 20 0 19 0.05 1 1 0 0
............................................................................................................GATGGTGGCGCAGCCTGTAGAGACA........................... 25 0 20 0.05 1 1 0 0
......................................................................................................................CAGCCTGTAGAGACAAAACGACCGT................. 25 0 20 0.05 1 0 0 1
..............................................................................................................TGGTGGCCCAGCCGGTAGTG.............................. 20 3 20 0.05 1 1 0 0
.................................................................................................................AGGCGCAGCCTGTAGAGACAAAACG...................... 25 1 20 0.05 1 0 1 0
..................................................................................................................GGCGCAGCCTGTAGAGACAAAAC....................... 23 0 20 0.05 1 1 0 0
...................................................................................................................GCGCAGCCTGTAGATACAAAACG...................... 23 1 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_4659:1331-1490 + dpe_154 AAAT-TCGCGTAC----TC------------TTTTTGGGAATGGGAGGGGGACAGACAAGGAAAGGATCATTAGGGGTTCGGTAAGTATATTTGGGCAAATATAGTATAGAGAGGGAATAGGGATCTACCACCGCGTCGGACATCTCTGTTTTGCTGGCACGGAGTCG-TGCCA-------CGCC
dp5 Unknown_group_39:127689-127848 + AAAT-TCGCGTAC----TC------------TTTTTGGGAATGGGAGGGGGACAGACAAGGAAAGGATCATTAGGGGTTCGGTAAGTATATTTGGGCAAAGATAGTATAGAGAAGGAATAGGGATCTACCACCGCGTCGGACATCTCTGTTTTGCTGGCACGGAGTCG-TGCCA-------CGCC
droGri2 scaffold_15279:38492-38644 + AAATATCGCGTGCTGGTATCGTTCGACCACATTTCCGGGAAGGGGGAAG----AGAGAAAAAGGGAATTTGCACG-ATCTCATAAA--------------TATAACGCGGAGG--------CGACACTCCAGGGTTTTCGTCGTTGCTGCTGGGCTGGT-----GTTATTGCCACAGCAGATGCC
droTak1 scf7180000414348:1813-1858 + AAAT-TCGCGTGCGAACTGACTTTGAGG---------TTAATTGTAGGGGGACAGA---------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AAAT-TCGCGTAC----TC------------TTTTTGGGAATGGGAGGGGGACAGACAAGGAAAGGATCATTAGGGGTTCGGTAAGTATATTTGGGCAAATATAGTATAGAGAGGGAATAGGGATCTACCACCGCGTCGGACATCTCTGTTTTGCTGGCACGGAGTCG-TGCCA-------CGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................TAGTATAGAGAGGGAATAGGG..............................................................2125.0010020008
......................................................................................................TAGTATAGAGAGGGAATAGG...............................................................2023.507010006
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTCG-................23202.70542510001
......................................................................................................TAGTATAGAGAGGGAATAGGGA.............................................................2221.503010002
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGT...................21201.40286161005
.................................................................................................................................................TCTGTTTTGCTGGCACGGAG....................20201.25251780000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTCG-TG..............25201.05210210000
......................................................................................................TAGTATAGAGAGGGAATAGGGATC...........................................................2421.002020000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTC..................22200.9018990000
........................................................................................................................................TCGGACATCTCTGTTTTGCTGGCAC........................25200.75151320000
.....................................................................................................ATAGTATAGAGAGGGAATAGG...............................................................2120.501000001
.........................................................................................................................................CGGACATCTCTGTTTTGCTGGCAC........................24200.408800000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTCG-T...............24200.408070001
........................................................CAAGGAAAGGATCATTAGGGGTTCGG.......................................................................................................2660.332020000
............................................................................................................................................ACATCTCTGTTTTGCTGGCACGGAG....................25200.306060000
........................................................................................................................................TCGGACATCTCTGTTTTGCTGGCACGGA.....................28200.204400000
..................................................................................................................................................CTGTTTTGCTGGCACGGAGTCG-................22200.204040000
........................................................CAAGGAAAGGATCATTAGGG.............................................................................................................2060.171010000
..................................................GACAGACAAGGAAAGGATCATTAGGGG............................................................................................................2760.171010000
........................................................CAAGGAAAGGATCATTAGGGGTT..........................................................................................................2360.171010000
...................................................ACAGACAAGGAAAGGATCATTAGGGG............................................................................................................2660.171010000
............................................GAGGGGGACAGACAAGGAAAGGATCA...................................................................................................................2660.171010000
.........................................................................................................................................CGGACATCTCTGTTTTGCTGGCACGGA.....................27200.153300000
....................................................................................................................................CGCGTCGGACATCTCTGTTTTGCTGG...........................26200.153210000
.........................................TGGGAGGGGGACAGACAAGGAAAGGA......................................................................................................................26200.102010001
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTCG-TGC.............26200.102010001
...................................................................................................................................CCGCGTCGGACATCTCTGTTTTGC..............................24200.102020000
...............................................................................................................................ACCACCGCGTCGGACATCTCTGT...................................23200.102200000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGA...................21200.102200000
.....................................................................................................................ATAGGGATCTACCACCGCGTC...............................................21100.101010000
.......................................................................TAGGGGTTCGGTAAGTATATTTGGG.........................................................................................25110.091010000
.......................................................................TAGGGGTTCGGTAAGTATATTTGG..........................................................................................24110.091010000
......................................................................TTAGGGGTTCGGTAAGTATATTTGGG.........................................................................................26110.091010000
.........................................................................GGGGTTCGGTAAGTATATTTGGGCAAA.....................................................................................27120.081010000
.............................................................................TTCGGTAAGTATATTTGGGC........................................................................................20120.081100000
......................................................................................................................TAGGGATCTACCACCGCGTCGGACA..........................................25180.061010000
.....TCGCGTAC----TC------------TTTTTGGGAATGGGA...........................................................................................................................................25190.051010000
......CGCGTAC----TC------------TTTTTGGGAATGGGA...........................................................................................................................................24190.051010000
....................................................................................................................................CGCGTCGGACATCTCTGTTTTGCTG............................25200.051010000
............................................................................................................................................ACATCTCTGTTTTGCTGGCACGGAGT...................26200.051010000
............................................................................................................................TCTACCACCGCGTCGGACATCTCTGTTT.................................28200.051010000
........................................................................................................................................TCGGACATCTCTGTTTTGCTGGCACGG......................27200.051010000
.........................................................................................................................................CGGACATCTCTGTTTTGCTGGCACGGG.....................27200.051100000
......................................................................................................................................................TTTGCTGGCACGGAGTCG-TGCCA-------....23200.051010000
.........................................TGGGAGGGGGACAGACAAGGAAAG........................................................................................................................24200.051010000
.................................................................................................................................CACCGCGTCGGACATCTCTGTTT.................................23200.051010000
...............................................................................................................................ACCACCGCGTCGGACATCTCTGC...................................23200.051100000
..................................................................................................................................................CTGTTTTGCTGGCACGGAGTCG-T...............23200.051010000
..................................................................................................................................................CTGTTTTGCTGGCACGGAGTC..................21200.051010000
............................................................................................................................................ACATCTCTGTTTTGCTGGCACGGA.....................24200.051010000
................................................................................................................................................CTCTGTTTTGCTGGCACGGAGTCG-TG..............26200.051010000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTAA-................23200.051010000
................................................................................................................................CCACCGCGTCGGACATCTCTGTTTTGC..............................27200.051010000
............................................................................................................................................ACATCTCTGTTTTGCTGGCACG.......................22200.051010000
.........................................TGGGAGGGGGACAGACAAGGAAAA........................................................................................................................24200.051010000
..............................................................................................................................................ATCTCTGTTTTGCTGGCACGT......................21200.051010000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAC....................20200.051100000
.......................................................................................................................................................TTGCTGGCACGGAGTCG-TG..............19200.051010000
....................................................................................................................................CGCGTCGGACATCTCTGTTTTGCTGGC..........................27200.051000001
..........................................GGGAGGGGGACAGACAAGGAAAGGA......................................................................................................................25200.051010000
..................................................................................................................................................CTGTTTTGCTGGCACGGAGT...................20200.051010000
...............................................................................................................................................TCTCTGTTTTGCTGGCACGGA.....................21200.051010000
...............................................................................................................................................TCTCTGTTTTGCTGGCACGG......................20200.051010000
.........................................................................................................................................CGGACATCTCTGTTTTGCTGG...........................21200.051010000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TG..............23200.051000001
dp5
AAAT-TCGCGTAC----TC------------TTTTTGGGAATGGGAGGGGGACAGACAAGGAAAGGATCATTAGGGGTTCGGTAAGTATATTTGGGCAAAGATAGTATAGAGAAGGAATAGGGATCTACCACCGCGTCGGACATCTCTGTTTTGCTGGCACGGAGTCG-TGCCA-------CGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-T...............22188.17147014600000100
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-................21185.6710209700001220
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TG..............23182.945304700006000
......................................................................................................TAGTATAGAGAAGGAATAGGGATCT..........................................................2582.882302000001020
......................................................................................................TAGTATAGAGAAGGAATAGGG..............................................................2182.13170500000390
......................................................................................................TAGTATAGAGAAGGAATAGGGATC...........................................................2482.001601600000000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTC..................20181.612902510001020
......................................................................................................TAGTATAGAGAAGGAATAGGGATCTA.........................................................2681.38110900002000
......................................................................................................TAGTATAGAGAAGGAATAGGGAT............................................................2381.38110600000050
...........................................................................................................TAGAGAAGGAATAGGGATCTACCACC....................................................2681.25100800000020
...........................................................................................................TAGAGAAGGAATAGGGATCTACCAC.....................................................2581.25100801001000
......................................................................................................TAGTATAGAGAAGGAATAGGGA.............................................................2281.25100900001000
......................................................................................................TAGTATAGAGAAGGAATAGG...............................................................2080.8870210000040
............................................................................................TGGGCAAAGATAGTATAGAGAAGGAA...................................................................2680.8870200001220
...................................................................................................................................................TGTTTTGCTGGCACGGAGT...................19190.791501200003000
....................................................................................................................................................GTTTTGCTGGCACGGAGTCG-................20180.721301300000000
.................TC------------TTTTTGGGAATGGGAGG.........................................................................................................................................19140.5070500002000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TGC.............24180.4480800000000
.............................................................................TTCGGTAAGTATATTTGGGCAAAGA...................................................................................2570.4330000000120
.................................................................................................................................CACCGCGTCGGACATCTCTGTTTTGC..............................26100.4040100000030
.................................................................................................................................CACCGCGTCGGACATCTCTGTTT.................................23100.4040100000030
........................................................................................................................................TCGGACATCTCTGTTTTGCTGGCAC........................25130.3850500000000
...........................................................................................................TAGAGAAGGAATAGGGATCTACCACCG...................................................2780.3830300000000
............................................................................................................AGAGAAGGAATAGGGATCTACCACCG...................................................2680.3830100000020
.........................................................AAGGAAAGGATCATTAGGGG............................................................................................................2080.3830100000200
...........................................................................................TTGGGCAAAGATAGTATAGAGAAGGAA...................................................................2780.3830000003000
...................................................................TCATTAGGGGTTCGGTAAGTATATT.............................................................................................2560.3320000000020
....................................................................................................................................................GTTTTGCTGGCACGGAGTCG-T...............21180.3360600000000
...................................................................TCATTAGGGGTTCGGTAAGTATAT..............................................................................................2460.3320000000020
...................................................................................................................................................TGTTTTGCTGGCACGGAG....................18190.3260600000000
.........................................................................................................................................CGGACATCTCTGTTTTGCTGGCACGGAG....................28160.3150000000050
................................................................................................................................CCACCGCGTCGGACATCTCTGTTT.................................24100.3030200000100
.................TC------------TTTTTGGGAATGGGAGGG........................................................................................................................................20140.2940400000000
.............................................................................TTCGGTAAGTATATTTGGGCAAAG....................................................................................2470.2920000000020
......................................................................................................................TAGGGATCTACCACCGCGTCGGACA..........................................25110.2730200001000
......................................................................................................TAGTATAGAGAAGGAATAGGGATCTACC.......................................................2880.2520100001000
......................................................................................................TAGTATAGAGAAGGAATAGGGATCTAC........................................................2780.2520200000000
...........................................................................................................TAGAGAAGGAATAGGGATCTACC.......................................................2380.2520200000000
...........................................................................................................TAGAGAAGGAATAGGGATCTACCA......................................................2480.2520200000000
.....................................................................................................ATAGTATAGAGAAGGAATAGGG..............................................................2280.2520200000000
..................................TTGGGAATGGGAGGGGGACAGACAA..............................................................................................................................25130.2330100000020
....................................................................................................................................................GTTTTGCTGGCACGGAGTCG-TGC.............23180.2240400000000
..........TAC----TC------------TTTTTGGGAATGGG............................................................................................................................................19140.2130200001000
.................TC------------TTTTTGGGAATGGGAGGGG.......................................................................................................................................21140.2130300000000
............................................................................................................................TCTACCACCGCGTCGGACATCTC......................................23100.2020200000000
.................................................................................................................................CACCGCGTCGGACATCTCTGTTTTG...............................25100.2020000000200
................................................................................................................................CCACCGCGTCGGACATCTCTGTT..................................23100.2020000000020
...............................TTTTTGGGAATGGGAGGGGGAC....................................................................................................................................22150.2030000000030
............................................................................................................................................ACATCTCTGTTTTGCTGGCACGGAG....................25160.1930300000000
......................................................................................................................TAGGGATCTACCACCGCGTCGGAC...........................................24110.1820100001000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TGCCA-------....26170.1830300000000
....................................................................CATTAGGGGTTCGGTAAGTATATT.............................................................................................2460.1710100000000
....................................................................................................................................................GTTTTGCTGGCACGGAGTC..................19180.1730300000000
.......................................................................TAGGGGTTCGGTAAGTATATTTGGGC........................................................................................2660.1710000000100
....................................................................................................................................................GTTTTGCTGGCACGGAGTCG-TG..............22180.1730300000000
......................................................................................................................................................TTTGCTGGCACGGAGTCG-................18180.1730300000000
.......................................................................TAGGGGTTCGGTAAGTATATTTG...........................................................................................2360.1710100000000
....................................................................................................................................................GTTTTGCTGGCACGGAGT...................18190.1630300000000
........................................................................................................................................TCGGACATCTCTGTTTTGCTGGCACG.......................26130.1520100000010
....................................................................CATTAGGGGTTCGGTAAGTA.................................................................................................2070.1410100000000
...........AC----TC------------TTTTTGGGAATGGGA...........................................................................................................................................19140.1420100001000
..........TAC----TC------------TTTTTGGGAATGGGA...........................................................................................................................................20140.1420000002000
..........................................................................GGGTTCGGTAAGTATATTTGGGC........................................................................................2370.1410000000010
...............................................................AGGATCATTAGGGGTTCGGTAAGTA.................................................................................................2570.1410000000100
........................................................................................TATTTGGGCAAAGATAGTATAGAG.........................................................................2470.1410000000100
..............................................................................TCGGTAAGTATATTTGGGCAAA.....................................................................................2270.1410100000000
.........................................................AAGGAAAGGATCATTAGGGGTTCGGTA.....................................................................................................2770.1410100000000
..............................................................................TCGGTAAGTATATTTGGGCAAAGATA.................................................................................2670.1410000001000
..................................................................................TAAGTATATTTGGGCAAAGATAGTAT.............................................................................2670.1410100000000
.........................................................AAGGAAAGGATCATTAGGGGTT..........................................................................................................2280.1310100000000
...........................................................................................................TAGAGAAGGAATAGGGATC...........................................................1980.1310100000000
............................................................................................................................................ACATCTCTGTTTTGCTGGCACGGAGT...................26160.1320200000000
.......................................................................................................AGTATAGAGAAGGAATAGGGATC...........................................................2380.1310100000000
.........................................................................................................TATAGAGAAGGAATAGGGATCTACC.......................................................2580.1310100000000
.......................................................................................................AGTATAGAGAAGGAATAGGGAT............................................................2280.1310100000000
......................................................GACAAGGAAAGGATCATTAGGG.............................................................................................................2280.1310100000000
..........................................................................................................ATAGAGAAGGAATAGGGATCTA.........................................................2280.1310000000100
..........................................................................................................................................GGACATCTCTGTTTTGCTGGCAC........................23160.1320200000000
.......................................................................................................AGTATAGAGAAGGAATAGGGATCT..........................................................2480.1310100000000
...................................................ACAGACAAGGAAAGGATCATTAGG..............................................................................................................2480.1310100000000
.....................................................................................................ATAGTATAGAGAAGGAATAGGGATCTA.........................................................2780.1310100000000
.................................................................................................AAAGATAGTATAGAGAAGGAATAGG...............................................................2580.1310000001000
............................................................................................................AGAGAAGGAATAGGGATCTACC.......................................................2280.1310100000000
............................................................................................TGGGCAAAGATAGTATAGAGAAGGAAA..................................................................2780.1310000000010
..........................................................................................................ATAGAGAAGGAATAGGGATCTACCA......................................................2580.1310100000000
.....................................................................................................ATAGTATAGAGAAGGAATAGGGA.............................................................2380.1310100000000
.......................................................................................................AGTATAGAGAAGGAATAGGGA.............................................................2180.1310100000000
......................................................GACAAGGAAAGGATCATTAGGGA............................................................................................................2380.1310100000000
.......................................................................................................AGTATAGAGAAGGAATAGGGATCTA.........................................................2580.1310100000000
..............................................................................................GGCAAAGATAGTATAGAGAAGGAAT..................................................................2580.1310100000000
.......................................................ACAAGGAAAGGATCATTAGGGGT...........................................................................................................2380.1310100000000
............................................................................................................AGAGAAGGAATAGGGATCTACCACC....................................................2580.1310100000000
........................................................................................................GTATAGAGAAGGAATAGGGAT............................................................2180.1310100000000
.........................................................................................................TATAGAGAAGGAATAGGGATCTACCAG.....................................................2780.1310100000000
.........................................................................................................................................CGGACATCTCTGTTTTGCTGGC..........................22160.1320000000020
.....................................................................................................ATAGTATAGAGAAGGAATAGGGATCT..........................................................2680.1310100000000
.........................................................AAGGAAAGGATCATTAGG..............................................................................................................1880.1310100000000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTCG-T...............24170.1220200000000
..................................................................................................................................................CTGTTTTGCTGGCACGGAGTCG-................22170.1220100000010
.......................................................................................................AGTATAGAGAAGGAATAG................................................................1890.1110100000000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TGCC............25180.1120100010000
......................................................................................................................TAGGGATCTACCACCGCGTCGGACATCT.......................................2890.1110100000000
......................................................................................................................TAGGGATCTACCACCGCGTCGGACATC........................................2790.1110100000000
......................................................................................................TAGTATAGAGAAGGAATAGGAC.............................................................2290.1110000000010
.................................................................................................AAAGATAGTATAGAGAAGGAATAGGA..............................................................2690.1110000001000
........................................................................................................................................................TGCTGGCACGGAGTCG-TGA.............19180.1120100100000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-A...............22180.1120200000000
...................................................................................................................................CCGCGTCGGACATCTCTGTTTTG...............................23100.1010000000010
..............................................................................................................................TACCACCGCGTCGGACATCTCTGTTT.................................26100.1010000000010
............................................................................................................................TCTACCACCGCGTCGGACATC........................................21100.1010100000000
..............................................................................................................................TACCACCGCGTCGGACATCTCTGTTTTGA..............................29100.1010000000010
...................................................................................................................................................TGTTTTGCTGGCACGGAAA...................19200.1020200000000
..........................................................................................................................GATCTACCACCGCGTCGGACATCTCTG....................................27100.1010000000100
............................................................................................................................TCTACCACCGCGTCGGACATCTCTGT...................................26100.1010100000000
.AAT-TCGCGTAC----TC------------TTTTTGGGAA................................................................................................................................................23100.1010100000000
.................................................................................................................................CACCGCGTCGGACATCTCTGTT..................................22100.1010100000000
................................................................................................................................CCACCGCGTCGGACATCTCTG....................................21100.1010100000000
....................................................................................................................................CGCGTCGGACATCTCTGTTTTGCTGGC..........................27100.1010000000010
......................................................................................................................TAGGGATCTACCACCGCGTCGGACAT.........................................26110.0910100000000
......................................................................................................................TAGGGATCTACCACCGCGTCGGA............................................23110.0910100000000
....................................................................................................................................CGCGTCGGACATCTCTGTTTTGCTG............................25110.0910100000000
......................................................................................................................TAGGGATCTACCACCGCGTCGGACCA.........................................26110.0910100000000
...T-TCGCGTAC----TC------------TTTTTGGGAATG..............................................................................................................................................23120.0810000001000
AAAT-TCGCGTAC----TC------------TTTTTGGA..................................................................................................................................................22120.0810000000010
..........................................................................................................................GATCTACCACCGCGTCGGACA..........................................21120.0810100000000
....................................................................................................................................CGCGTCGGACATCTCT.....................................16120.0810000000100
................................TTTTGGGAATGGGAGGGGGACAGACAA..............................................................................................................................27130.0810000000010
........................................................................................................................................TCGGACATCTCTGTTTTGCTGGC..........................23130.0810000000010
...................................TGGGAATGGGAGGGGGACAGACC...............................................................................................................................23130.0810000000010
...................................TGGGAATGGGAGGGGGACAGACAAGG............................................................................................................................26130.0810100000000
.................................TTTGGGAATGGGAGGGGGACAGAA................................................................................................................................24130.0810100000000
..................................TTGGGAATGGGAGGGGGACAGA.................................................................................................................................22130.0810100000000
...................................TGGGAATGGGAGGGGGACAGACAA..............................................................................................................................24130.0810100000000
........................................................................................................................................TCGGACATCTCTGTTTTGCTGGCACGGA.....................28130.0810100000000
..................................TTGGGAATGGGAGGGGGACAGAC................................................................................................................................23130.0810000000100
...............................TTTTTGGGAATGGGAGGGGGACAGA.................................................................................................................................25130.0810100000000
..................................TTGGGAATGGGAGGGGGACAGT.................................................................................................................................22130.0810100000000
..........TAC----TC------------TTTTTGGGAATGGGAG..........................................................................................................................................21140.0710000000010
...........AC----TC------------TTTTTGGGAATGGGAG..........................................................................................................................................20140.0710000000010
..........TAC----TC------------TTTTTGGGAATGGGAGGG........................................................................................................................................23140.0710000000010
..........TAC----TC------------TTTTTGGGAATGGGAGGGGG......................................................................................................................................25140.0710100000000
..................C------------TTTTTGGGAATGGGAGG.........................................................................................................................................18140.0710100000000
.................TC------------TTTTTGGGAATGGGAG..........................................................................................................................................18140.0710100000000
.................TC------------TTTTTGGGAATGGGAGGGGGACA...................................................................................................................................25140.0710100000000
........................................................................................................................................TCGGACATCTCTGTTTTGCTGG...........................22140.0710000000010
..................C------------TTTTTGGGAATGGGAGGGG.......................................................................................................................................20140.0710100000000
.................................TTTGGGAATGGGAGGGGG......................................................................................................................................18150.0710100000000
.......................................................................................................................................................TTGCTGGCACGGAGTCG-TGCCA-------CGC.25160.0610100000000
........................................................................................................................................................TGCTGGCACGGAGTCG-TGCCA-------CGC.24160.0610000000010
.........................................................................................................................................CGGACATCTCTGTTTTGCTGGCAC........................24160.0610000000010
...............................................................................................................................................TCTCTGTTTTGCTGGCACGGAGTCG-................25160.0610100000000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TGCCA-------CA..28160.0610100000000
...........................................................................................................................................GACATCTCTGTTTTGCTGGCACGGAGT...................27160.0610100000000
...........................................................................................................................................GACATCTCTGTTTTGCTGGCA.........................21160.0610100000000
......................................................................................................................................................TTTGCTGGCACGGAGTCG-TGCCA-------CGC.26160.0610100000000
...............................................................................................................................................TCTCTGTTTTGCTGGCACGG......................20170.0610100000000
.........................................................................................................................................CGGACATCTCTGTTTTGCTG............................20170.0610000000010
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGTCG-................23170.0610100000000
..................................................................................................................................................CTGTTTTGCTGGCACGGAGTCG-TG..............24170.0610100000000
...............................................................................................................................................TCTCTGTTTTGCTGGCACGGA.....................21170.0610100000000
.....................................................................................................................................................TTTTGCTGGCACGGAGTCG-T...............20180.0610100000000
..................................................................................................................................................CTGTTTTGCTGGCACGGAG....................19180.0610100000000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TGGGC-------....26180.0610100000000
.....................................................................................................................................................TTTTGCTGGCACGGAGTCG-TG..............21180.0610100000000
.....................................................................................................................................................TTTTGCTGGCACGGAGTCG-TGC.............22180.0610001000000
........................................................................................................................................................TGCTGGCACGGAGTCG-TTT.............19180.0610100000000
...................................................................................................................................................TGTTTTGCTGGCACGGAGTCG-TAA.............24180.0610100000000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAG....................20180.0610100000000
........................................................................................................................................................TGCTGGCACGGAGTCG-TGCA............20180.0610100000000
......................................................................................................................................................TTTGCTGGCACGGAGTCG-TGT.............21180.0610100000000
.................................................................................................................................................TCTGTTTTGCTGGCACGGAGT...................21180.0610100000000
......................................................................................................................................................TTTGCTGGCACGGAGTCG-T...............19180.0610100000000
.......................................................................................................................................................TTGCTGGCACGGAGTCG-T...............18180.0610100000000
........................................................................................................................................................TGCTGGCACGGAGTCG-TG..............18180.0610100000000
...................................................................................................................................................TGTTTTGCTGGCACGGAA....................18200.0510100000000
droGri2
AAATATCGCGTGCTGGTATCGTTCGACCACATTTCCGGGAAGGGGGAAG----AGAGAAAAAGGGAATTTGCACG-ATCTCATAAA--------------TATAACGCGGAGG--------CGACACTCCAGGGTTTTCGTCGTTGCTGCTGGGCTGGT-----GTTATTGCCACAGCAGATGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droTak1
AAAT-TCGCGTGCGAACTGACTTTGAGG---------TTAATTGTAGGGGGACAGA---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:38 PM