dpe_1507

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGTCCTTTGGCTCCTCCGCCGGCTGCTTGTCCAATGGTCCCAAGGGAATGGTGCGTGTCACCAGCTACTTGGACTGGATTCGTGATCACACTGGAAATTTCTTACTAAGCGAGCACTACTTTGAAGAATTAAATGTTTTAAATGGAAAAAATCTGGTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ********************************************************.....(((.(((((...(((((((((....))).)))...)))...)))))..))).............**************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	M042 female body	V111 male body	V057 head
..........................................................CACCAGCTACTTGGACTG...............................................................................................................................................................................	18	0	2	3.00	6	6	0	0	0
.............CTCCGCCGGCTGCTTGTCCAATG.......................................................................................................................................................................................................................	23	0	1	3.00	3	3	0	0	0
........................................................GTCACCAGCTACTTGGACTG...............................................................................................................................................................................	20	0	2	2.50	5	4	1	0	0
.............................................................CAGCTACTTGGACTGGATTCGTGATCACA.................................................................................................................................................................	29	0	1	2.00	2	2	0	0	0
....................................................GCGTGTCACCAGCTACTTGGACTGGATT...........................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0
........................................................GTCACCAGCTACTTGGACT................................................................................................................................................................................	19	0	2	1.50	3	3	0	0	0
................................................................................CGTGATCACACTGGAATT.........................................................................................................................................................	18	1	2	1.50	3	3	0	0	0
........................................................GTCACCAGCTACTTGGAC.................................................................................................................................................................................	18	0	2	1.50	3	3	0	0	0
............................GTCCAATGGTCCCAAGGGAATG.........................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0
..................................................GTGCGTGTCACCAGCTACTTGGACTGG..............................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0
............................GTCCAATGGTCCCAAGGGAATGGT.......................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0
.............................TCCAATGGTCCCAAGGGAATGG........................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0
.............................................................................ATTCGTGATCACACTGGA............................................................................................................................................................	18	0	1	1.00	1	1	0	0	0
..............................................................AGCTACTTGGACTGGATT...........................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0
.............CTCCGCCGGCTGCTTGTCC...........................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
........................GCTTGTCCAATGGTCCCAAGGGAAT..........................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0
....................................................................................................CTTACTAAGCGAGCACTACTTTGAAGA............................................................................................................................	27	0	1	1.00	1	0	1	0	0
........................................................GTCACCAGCTACTTGGACTGGAT............................................................................................................................................................................	23	0	2	0.50	1	0	1	0	0
........................................................GTCACCAGGTACTTGGACTGGAT............................................................................................................................................................................	23	1	2	0.50	1	0	1	0	0
........................................................GTCACCAGCTACTTGGACTGG..............................................................................................................................................................................	21	0	2	0.50	1	0	1	0	0
...........................................................ACCAGCTACTTGGACTGG..............................................................................................................................................................................	18	0	5	0.20	1	1	0	0	0
................................................TTGTGCGTGTCACCGGCTAT.......................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	1
.............................................................CAGCTACTTGGACTGGAC............................................................................................................................................................................	18	1	5	0.20	1	1	0	0	0
............................................................................................GGAACTTCGTTACTAAGC.............................................................................................................................................	18	3	20	0.05	1	0	1	0	0

ACAGGAAACCGAGGAGGCGGCCGACGAACAGGTTACCAGGGTTCCCTTACCACGCACAGTGGTCGATGAACCTGACCTAAGCACTAGTGTGACCTTTAAAGAATGATTCGCTCGTGATGAAACTTCTTAATTTACAAAATTTACCTTTTTTAGACCAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN **************************************************************************************************************************.....(((.(((((...(((((((((....))).)))...)))...)))))..))).............********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M042 female body
..........................................................TTGGTCTATGAACCTGACCGA............................................................................................................................................................................	21	3	9	0.11	1	1	0
............................................................................................CCTTCAAGCAATGATTCG.............................................................................................................................................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_35:96524-96774 -	dpe_1507	TGTCCTTTGGCTCCTCCGCCGGCTGCTTGTCCAATGGTCCCAAGGGAATGGTGCGTGTCACCAGCTACTTGGACTGGATTCGTGATCACACTGGAAATTTCTTACTAAGCGA-GCACT-A-------CT-T----TG------A-----AGAATTAAAT-------G----TTT------T--------AAAT-------GGAAA-A-----AATCTGGTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
dp5	XR_group6:9629466-9629623 +		TGTCCTTTGGCTCCTCCGCCGGCTGCTTGTCCAATGGTCCCAAGGGAATGGTGCGTGTCACCAGCTACTTGGACTGGATTCGTGATCACACTGGA-ATTTCTTACTAAGCGA-GCATT-A-------CT-T----TG------A-----AGAATTAAAT-------G----TTT------TT-------AAAT-GGAA---ACAA-A-----AATC----TG--------------------------------------------------------------------------------------------
droWil2	scf2_1100000004511:3560744-3560897 -		TTTCCTTCGGTTCATCTGCTGGCTGTGAGGCAAACGCCCCCAAGGGTTTGACTCGTGTCACTGCCTACTTGGACTGGATTCGTGACAACACTGGC-ATTTCCTACTAAATCA-ACATT-A-------AA-A----TG------T-----AAAAATAA---------------AG---CAAC--------AAAC-------A-----GAAATCAAAT----CT--------------------------------------------------------------------------------------------
droVir3	scaffold_13049:3939283-3939433 +		CATCCTTCGGCCATTGGGAGGGCTGCACTGCCGGCCAACCTGCTGGCTTCACCCGTGTCACTGGCTACTTTGACTGGATTCGTGACAACACTGGT-ATCTCCTACTAAATGG-AT--A--------------A----------TTCGAACATAATAAAC-------A----CTT------AA--------AA--------------GCACACAAGT----CT--------------------------------------------------------------------------------------------
droMoj3	scaffold_6654:171643-171794 -		CATCCTTTGGTCATTGGGACGGCTGCACTGCCGGCCAACCCGCTGGCTTCACTCGCGTCACTGGCTACCTGGACTGGATTCGTGACAATACTGGT-ATCTCCTACTAAATGG-AA--TACTT--------TTA----------------AATAATAAAT-------A----TTG------AAAGCTTATG-----------GCAA-A-----AA----------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:10795476-10795617 -		CATCCTTTGGCCACTGGGCTGGCTGCACTGTTGGAGAGCCGGCGGGCTTTACCCGAGTCTCTGGCTACCTGGACTGGATTCGGGACAACACTGGC-ATCTCCTACTAAGCGATGAATT-A-------CT-C----TA------A-----ATAAATATAT-------A----TAT------TA--------AA--------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13337:16734914-16735055 -		TCTCTTTCGGCTCCTCCGCCGGTTGCCTGTCCAACGGACCCAAGGGCATGGTCCGCGTCACCAGCTACTTGGACTGGATCCGCGACCACACTGGC-ATCGCTTACTACTAAG-C-ACT-TTT--------CTA--------------------------AATAAATAT----TG------AAG-CTTTA-A-------A-------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396641:263972-264131 -		TCTCCTTCGGCTCCTCCGCCGGTTGCCTGTCCAACGGACCCAAGGGAATGGTCCGCGTCACCAGCTACTTGGACTGGATCCGCGACCACACTGGC-ATCGCTTACTACTAAG-C-AAT-TTT--------CTA--------------------------AATAAATTT----TG------AAG-CTTTTAAAA-------AC-AAAT-AGCTAAGT----CT--------------------------------------------------------------------------------------------
droKik1	scf7180000302334:541287-541438 -		TCTCGTTTGGTTCCTCCGCCGGCTGCCTGTCGAATGGTCCCAAGGGAATGGTGCGTGTCACTAGCTACTTGGACTGGATCCGCGATCACACTGGA-ATTGCTTACTAAGCGG-GA--T---T--------TTA--------------------------AATAAACTT---TTG--ATATG--------AA------ATTTGAAG-A-----AATT----TG--------------------------------------------------------------------------------------------
droFic1	scf7180000453929:1547521-1547677 +		TCTCCTTCGGCTCCTCCGCCGGCTGCCTCTCGAACGGACCCAAGGGCATGGTGCGCGTCACCAGTTACCTGGACTGGATCCGCGACCACACTGGC-ATTTCCTACTAGAGGG-AA--A---A--------CTAAAT------------ACAGATTGATT-------A----TAT------A--------AAAT-------TAAAA-A-----AATGTGATTT--------------------------------------------------------------------------------------------
droEle1	scf7180000491280:2626600-2626746 +		CCTCCTTCGTCTCCGCCGCCGGCTGCCAGTCCGGAGCTCCCGCCGTCTTCACCCGCGTCACCGGGTACCTGGACTGGATCCGCGACAACACCGGC-ATCGCCTACTAAATGT-GC--A--------------A----------ATG-----TAAAAAAT-------T----TTT------T--------T-------AATTCAAT-A-----AATT----TG--------------------------------------------------------------------------------------------
droRho1	scf7180000779574:4598-4752 -		TGTCCTTCGGCTCCTCCGCCGGCTGCTTGTCCAACGGTCCCAAGGGAATGGTGCGCGTCACCAGCTACCTGGACTGGATTCGCGACCACACTGGC-ATCTCTTACTAACAAG-TT------TC--------TT--------------------------AATAAACTT---TTGTGAAT--------------TGAATATGTAAA-A-----AATGTGG--T--------------------------------------------------------------------------------------------
droBia1	scf7180000302193:3567834-3567970 +		TCTCCTTCGGCTCCGTCGAGGGTTGCCTTTCCAACAGCCCCAAGGGAATGACTCGTGTGTCCAGCTACTTGGACTGGATCCGCGACAACACGGGC-ATTTCCTACTAATAAA-AT------CCGCCTTGT-----TT--------A-------------AATAAA----------------------------AGAAAT-------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415868:801043-801183 -		TCTCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGAATGGTCCGCGTCACCAGCTACCTGGACTGGATCCGCGACCACACTGGC-ATCTCTTACTAAAGAG-TT--T---A--------TTG--------------------------AATAAACTA---TTGCGAAA--------------TGAAAA-------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409005:828456-828607 -		GCAACTTCGTTTCTTCCAACGGCTGCCAGTCTGGAGCTCCTGCTGGATTCCAGCGCGTCACCTATCACTTGGACTGGATCCGTGACCACACCGGT-ATTTCCTACTAACTGT-CT--T--------------A----------A----------------ATAAGTATATAAAT------C----ATTTG-----------AAAA-GCATTCGTTT----TC--------------------------------------------------------------------------------------------
dm3	chr3L:6046185-6046333 +		TCTCCTTCGGCTCCGCCGCGGGATGCCTGTCCAACAGCCCCAAAGGATTGACCCGAGTGACCGGTTACTTGGACTGGATCCGCGACCATACTGGC-ATTTCTTACTAATAAA-GT------TCGCTATTT-----TGAGAAAT--------------------------------------------------TAAACGAATAAA-A-----AAGT----TC--------------------------------------------------------------------------------------------
droSim2	3l:5956130-5956263 +		TGTCCTTCGGCTCCGCCGAGGGATGCCTGTCCAACAGCCCCAAGGGATTGACCCGAGTGACCGGTTACTTGGACTGGATTCGCGACCATACTGGC-ATTTCTTACTAATAAA-GT------TCGCCATTT-----TGAGAAAT--------------------------------------------------TAAA---------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_2:5996046-5996192 -		TGTCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGTGCGCGTCACCAGTTACCTGGACTGGATCCGCGACCACACTGGC-ATCTCTTACTAAATAA-AT--G--------------A----------TTT-------------AATAAAATA---AAG------C--------A-------ATTATAAA-A-----AAAA----CC--------------------------------------------------------------------------------------------
droYak3	3L:6626854-6626989 +		TGTCCTTCGGTTCCGCCGACGGCTGCCTGTCCAACGGCCCCAAGGGATTGACCCGAGTGACCGGCTACTTGGACTGGATCCGTGACCACACCGGC-ATTTCCTACTAATATA-TT------TCGCCAATT-----TAAGGAAA--------------------------------------------------TAAATG-------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4784:8743238-8743373 +		TGTCCTTCGGATCCGCCTTGGGATGCCTGTCCAACAGTCCCAAGGGATTGACCCGAGTGACCAGCTACTTGGACTGGATCCGTGACCATACTGGC-ATTTCTTACTAATAAG-TT------TCGCCATTT-----CAAGAAAA--------------------------------------------------TAAACG-------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TGTCCTTTGGCTCCTCCGCCGGCTGCTTGTCCAATGGTCCCAAGGGAATGGTGCGTGTCACCAGCTACTTGGACTGGATTCGTGATCACACTGGAAATTTCTTACTAAGCGA-GCACT-A-------CT-T----TG------A-----AGAATTAAAT-------G----TTT------T--------AAAT-------GGAAA-A-----AATCTGGTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................CACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	18	2	3.00	6	6	0	0	0	0	0
.............CTCCGCCGGCTGCTTGTCCAATG......................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	20	2	2.50	5	4	1	0	0	0	0
.............................................................CAGCTACTTGGACTGGATTCGTGATCACA................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
....................................................GCGTGTCACCAGCTACTTGGACTGGATT..........................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACT...............................................................................................................................................................................................................................................	19	2	1.50	3	3	0	0	0	0	0
........................................................GTCACCAGCTACTTGGAC................................................................................................................................................................................................................................................	18	2	1.50	3	3	0	0	0	0	0
............................GTCCAATGGTCCCAAGGGAATG........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................GTGCGTGTCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............................GTCCAATGGTCCCAAGGGAATGGT......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................TCCAATGGTCCCAAGGGAATGG.......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................ATTCGTGATCACACTGGA...........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................AGCTACTTGGACTGGATT..........................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............CTCCGCCGGCTGCTTGTCC..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................GCTTGTCCAATGGTCCCAAGGGAAT.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................................................................................CTTACTAAGCGA-GCACT-A-------CT-T----TG------A-----AGA..................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
........................................................GTCACCAGCTACTTGGACTGGAT...........................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
........................................................GTCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...........................................................ACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	18	5	0.20	1	1	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGAC...........................................................................................................................................................................................................................................	18	5	0.20	1	1	0	0	0	0	0

dp5

TGTCCTTTGGCTCCTCCGCCGGCTGCTTGTCCAATGGTCCCAAGGGAATGGTGCGTGTCACCAGCTACTTGGACTGGATTCGTGATCACACTGGA-ATTTCTTACTAAGCGA-GCATT-A-------CT-T----TG------A-----AGAATTAAAT-------G----TTT------TT-------AAAT-GGAA---ACAA-A-----AATC----TG--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................GTCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	20	2	14.00	28	0	28	0	0	0	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACT...............................................................................................................................................................................................................................................	19	2	5.00	10	0	10	0	0	0	0	0	0	0	0
.........................................................................CTGGATTCGTGATCACACTGGA-..........................................................................................................................................................................................................................	22	1	5.00	5	0	5	0	0	0	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	21	2	4.50	9	0	9	0	0	0	0	0	0	0	0
....................................................GCGTGTCACCAGCTACTTGGA.................................................................................................................................................................................................................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0
............................GTCCAATGGTCCCAAGGGAATGGT......................................................................................................................................................................................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..........................................................CACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	18	2	3.00	6	0	6	0	0	0	0	0	0	0	0
...................................................TGCGTGTCACCAGCTACTT....................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................TCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	19	2	3.00	6	0	6	0	0	0	0	0	0	0	0
.GTCCTTTGGCTCCTCCGCCGGCT..................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................AGCGA-GCATT-A-------CT-T----TG------A-----AGA..................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................CAATGGTCCCAAGGGAATG........................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................GCGTGTCACCAGCTACTT....................................................................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................................................CACCAGCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................AATGGTCCCAAGGGAATGGT......................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0
.................................................GGTGCGTGTCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................CTGCTTGTCCAATGGTCCCAAGGG............................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................GCTTGTCCAATGGTCCCAAGG.............................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................GTCCAATGGTCCCAAGGGAATG........................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................CCAATGGTCCCAAGGGAATGGTGCGT..................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................GTGCGTGTCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................ATTAAAT-------G----TTT------TT-------AAAT-GGA.....................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................TGCTTGTCCAATGGTCCCAAGGGAAT.........................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................GCGTGTCACCAGCTACTTGGACTGGATT..........................................................................................................................................................................................................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.......................TGCTTGTCCAATGGTCCCAA...............................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..TCCTTTGGCTCCTCCGCCGG....................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................GGTGCGTGTCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................CACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................ATTAAAT-------G----TTT------TT-------AAAT-GGAA---AC...............................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................GA-GCATT-A-------CT-T----TG------A-----AGAATTAAAT-------....................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GGACTGGATTCGTGATCACACTGGA-..........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TCCAATGGTCCCAAGGGAAT.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................CACTGGA-ATTTCTTACTAAGC............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CTTTGGCTCCTCCGCCGGCT..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................GAATTAAAT-------G----TTT------TT-------AAAT-GGA.....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TCCAATGGTCCCAAGGGAATG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................AGCGA-GCATT-A-------CT-T----TG------A-----AGAATTAAA............................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TGCGTGTCACCAGCTACTTG...................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TGGATTCGTGATCACACTGGA-..........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................CGTGATCACACTGGA-ATTT......................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................CAATGGTCCCAAGGGAATGGT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................TTTCTTACTAAGCGA-GCATT-A-------CT-........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGCGTGTCACCAGCTACTT....................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GGACTGGATTCGTGATCAC.................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGATTCGTGAC....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................CAAGGGAATGGTGCGTGTC...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................GCGTGTCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................CTGGA-ATTTCTTACTAAGCGA-GCATT-...................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................CCAGCTACTTGGACTGGATTCGTGAT....................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CTTGTCCAATGGTCCCAAGG.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................CTACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................ATT-A-------CT-T----TG------A-----AGAATTAAAT-------....................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................ACTGGA-ATTTCTTACTAAGC............................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................CGTGATCACACTGGA-ATTTCTTACTA...............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................T-A-------CT-T----TG------A-----AGAATTAAAT-------G----TTT------TT-------AA...........................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................GCGA-GCATT-A-------CT-T----TG------A-----AGA..................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TG------A-----AGAATTAAAT-------G----TTT------TT-------AAAT-GGA.....................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GGCTCCTCCGCCGGCTGCTT..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................TTTCTTACTAAGCGA-GCATT-A-------CT-T----TG------A-----.....................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GCTTGTCCAATGGTCCCAAGGGA...........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TCCTTTGGCTCCTCCGCCGGCT..................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................TGCTTGTCCAATGGTCCCAAGGG............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................TCGTGATCACACTGGA-AT........................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CCTTTGGCTCCTCCGCCGGCTGCT...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GGCTGCTTGTCCAATGGTCCCAAGG.............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................CGTGATCACACTGGA-ATTTCTTACTAAGC............................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................GCGTGTCACCAGCTACTTG...................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................TACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................ATCACACTGGA-ATTTCTTACTA...............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................ACTGGATTCGTGATCACACTGGA-AT........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TACTAAGCGA-GCATT-A-------CT-T----TG------A-----AGA..................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................ACTGGATTCGTGATCACACT..............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................GCTGCTTGTCCAATGGTCCCAAGGG............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GGACTGGATTCGTGATCACACTGGA-ATT.......................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GCTTGTCCAATGGTCCCAAGGGAATG........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGGACTGGATTCGTGATC...................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GTCCTTTGGCTCCTCCGCCGGCTG.................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................GA-GCATT-A-------CT-T----TG------A-----AGAATTAAAT-------G----T..............................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GGCTCCTCCGCCGGCTGCT...............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................CGGCTGCTTGTCCAATGGTCC..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CTGGATTCGTGATCACACTGGA-ATTT......................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................CCAATGGTCCCAAGGGAAT.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................AAGGGAATGGTGCGTGTCACCAGCTACTT....................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................CTAAGCGA-GCATT-A-------CT-T----TG------A-----.....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..TCCTTTGGCTCCTCCGCCGGC...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CTTTGGCTCCTCCGCCGGCTG.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................TGTCCAATGGTCCCAAGGGAATG........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGATTCGTGAT....................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................TCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................TCACCAGCTACTTGGACT...............................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACTGGA............................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................CACCAGCTACTTGGACTGGAT...........................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGAT...........................................................................................................................................................................................................................................	18	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...........................................................ACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	18	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.......................................................TGTCACCAGCTACTTGGATGA..............................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	1	0	0	0	0	0

droWil2

TTTCCTTCGGTTCATCTGCTGGCTGTGAGGCAAACGCCCCCAAGGGTTTGACTCGTGTCACTGCCTACTTGGACTGGATTCGTGACAACACTGGC-ATTTCCTACTAAATCA-ACATT-A-------AA-A----TG------T-----AAAAATAA---------------AG---CAAC--------AAAC-------A-----GAAATCAAAT----CT--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................CTGCCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	23	1	25.00	25	0	0	17	8	0
..........................................................CACTGCCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	25	1	16.00	16	0	0	2	14	0
........................................................GTCACTGCCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	27	1	12.00	12	0	0	1	11	0
................................................................CTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	19	1	10.00	10	0	1	4	5	0
.............ATCTGCTGGCTGTGAGGCA..........................................................................................................................................................................................................................................................................................	19	1	9.00	9	0	0	1	8	0
...................................................................CTTGGACTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	25	4	6.75	27	0	0	1	25	1
.........................................................................CTGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	22	4	6.25	25	0	0	2	23	0
...........................................................ACTGCCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	24	1	6.00	6	0	0	2	4	0
...................................................................CTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	18	4	4.50	18	0	1	0	17	0
...........TCATCTGCTGGCTGTGAGGCA..........................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	2	2	0
.............................................................................ATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	18	4	3.50	14	0	0	0	14	0
...................................................................CTTGGACTGGATTCGTGAC....................................................................................................................................................................................................................................	19	4	3.25	13	1	0	0	12	0
.....................................................................TGGACTGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	26	4	3.25	13	0	0	0	13	0
...........................................................................GGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	20	4	3.00	12	0	0	0	12	0
.......................................................................GACTGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	24	4	3.00	12	0	0	0	12	0
..............................................................GCCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	21	1	3.00	3	0	0	1	2	0
..................................................................ACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	19	4	2.75	11	0	0	0	11	0
..........................................................................TGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	21	4	2.50	10	0	0	0	10	0
............................................................................GATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	19	4	2.50	10	0	0	0	10	0
........................................................................ACTGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	23	4	2.50	10	0	0	0	10	0
................................................................CTACTTGGACTGGATTCGTG......................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
.................................................GACTCGTGTCACTGCCTACTTGGACT...............................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0
...............................................TTGACTCGTGTCACTGCCTACTT....................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
................................AACGCCCCCAAGGGTTTGACT.....................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
.................................................GACTCGTGTCACTGCCTACTTG...................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
.......................TGTGAGGCAAACGCCCCCAAGGGT...........................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0
...............................................TTGACTCGTGTCACTGCCTACTTGGACT...............................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0
.................................................GACTCGTGTCACTGCCTACTT....................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
.................................................GACTCGTGTCACTGCCTACTTGGACTG..............................................................................................................................................................................................................................................	27	1	2.00	2	0	0	1	1	0
.....................................................................................................................................................AAAAATAA---------------AG---CAAC--------AAAC-------A-----............................................................................................................	19	1	2.00	2	0	0	0	2	0
...............................................TTGACTCGTGTCACTGCCTACTTG...................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
................................................................CTACTTGGACTGGATTCGTGAC....................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
.............................................................TGCCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
..........................................................CACTGCCTACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	2	0
..................................................................ACTTGGACTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	26	4	1.50	6	0	0	0	6	0
....................................................................TTGGACTGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	27	4	1.25	5	0	0	1	4	0
...................................................................CTTGGACTGGATTCGTGACA...................................................................................................................................................................................................................................	20	4	1.25	5	0	0	0	5	0
........GGTTCATCTGCTGGCTGTGAGGCAAA........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............ATCTGCTGGCTGTGAGGCAAA........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
...................................................CTCGTGTCACTGCCTACTTGGA.................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.........................................AAGGGTTTGACTCGTGTCAC.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................................ACTGCCTACTTGGACTGG.............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................................................................ATT-A-------AA-A----TG------T-----AAAAATAA---------------AG---C........................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................................................TACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
......................................................................GGACTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	22	4	1.00	4	0	0	0	4	0
.............................................GTTTGACTCGTGTCACTGCCTACTTG...................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.TTCCTTCGGTTCATCTGCTG.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..............TCTGCTGGCTGTGAGGCAAA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................................CGTGTCACTGCCTACTTGGACTG..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..........................GAGGCAAACGCCCCCAAGGGTT..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
................................................................CTACTTGGACTGGATTCGTGACAACA................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...........................................................ACTGCCTACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
................................................................CTACTTGGACTGGATTCGTGACA...................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........TCATCTGCTGGCTGTGAGGCAAAC.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............CATCTGCTGGCTGTGAGGCA..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........GGTTCATCTGCTGGCTGTGA..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.............................GCAAACGCCCCCAAGGGTTT.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................................................................................ACTGGC-ATTTCCTACTAAATC...........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............................................TTTGACTCGTGTCACTGCCTACTTGGAC................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
.............................................................TGCCTACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.........................................................................CTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	19	4	1.00	4	0	0	0	4	0
...................................................................................................................ATT-A-------AA-A----TG------T-----AAAAATAA---------------AG---.........................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............CATCTGCTGGCTGTGAGGCAAACGCCCC..................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
.............ATCTGCTGGCTGTGAGGCAAAC.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................CGTGTCACTGCCTACTTGGA.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................................................CCTACTTGGACTGGATTCGT.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................AAATAA---------------AG---CAAC--------AAAC-------A-----GAA.........................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................TGACTCGTGTCACTGCCTACTTGGA.................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
............................................................CTGCCTACTTGGACTGGATTCGTGA.....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................CTCGTGTCACTGCCTACTTG...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................CCCCAAGGGTTTGACTCGTGT................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................TAA---------------AG---CAAC--------AAAC-------A-----GAAATCAA....................................................................................................	22	1	1.00	1	0	0	0	1	0
...............CTGCTGGCTGTGAGGCAAA........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................CTGTGAGGCAAACGCCCCCAAGGGTT..........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
............................................................CTGCCTACTTGGACTGGATT..........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................T-----AAAAATAA---------------AG---CAAC--------AAAC-------A-----GA..........................................................................................................	22	1	1.00	1	0	0	0	1	0
...............................................TTGACTCGTGTCACTGCCTA.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................CACTGCCTACTTGGACTGGATTCGTG......................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...................................................CTCGTGTCACTGCCTACTT....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..................................................ACTCGTGTCACTGCCTACTTG...................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
........................................................................................................................................G------T-----AAAAATAA---------------AG---CAAC--------AAAC-------A-----G...........................................................................................................	22	1	1.00	1	0	0	0	1	0
.......CGGTTCATCTGCTGGCTGT................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.......................TGTGAGGCAAACGCCCCCAAGGGTT..........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................................................GACAACACTGGC-ATTTCCTACTAAAT............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..........................................................CACTGCCTACTTGGACTGG.............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.................................................GACTCGTGTCACTGCCTACTTGGA.................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.......................................................................................................................................TG------T-----AAAAATAA---------------AG---CAAC--------AAAC-------A-----GA..........................................................................................................	24	1	1.00	1	0	0	0	1	0
........................................................................ACTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	20	4	1.00	4	0	0	0	4	0
.............................................................TGCCTACTTGGACTGGATTCGTG......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
......................CTGTGAGGCAAACGCCCCCAAGGGT...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....................................................CGTGTCACTGCCTACTTGGACC...............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
..................................................ACTCGTGTCACTGCCTACTTGGACT...............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................ACGCCCCCAAGGGTTTGACTCGTGT................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.......................TGTGAGGCAAACGCCCCCAAGGGTTT.........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................TTGACTCGTGTCACTGCCTACTTGGAC................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.................................................GACTCGTGTCACTGCCTACTTGG..................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
........................................................................................................................................G------T-----AAAAATAA---------------AG---CAAC--------AAAC-------A-----GAAATC......................................................................................................	27	1	1.00	1	0	0	0	1	0
............................................................................GATTCGTGACAACACTGGC-A.........................................................................................................................................................................................................................	20	4	0.75	3	0	2	0	1	0
.......................................................................GACTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	21	4	0.75	3	0	0	1	2	0
...................................................................CTTGGACTGGATTCGTGACAACA................................................................................................................................................................................................................................	23	4	0.75	3	0	0	0	3	0
....................................................................TTGGACTGGATTCGTGACA...................................................................................................................................................................................................................................	19	4	0.50	2	0	0	0	2	0
..................................................................ACTTGGACTGGATTCGTG......................................................................................................................................................................................................................................	18	4	0.50	2	0	0	0	2	0
.....................................................................TGGACTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	23	4	0.50	2	0	0	0	2	0
....................................................................TTGGACTGGATTCGTGAC....................................................................................................................................................................................................................................	18	4	0.50	2	0	0	0	2	0
...................................................................CTTGGACTGGATTCGTGACAACACTGG............................................................................................................................................................................................................................	27	4	0.50	2	0	0	0	2	0
.......................................................................GACTGGATTCGTGACAACACTGGC-A.........................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	2	0
...................................................................................GACAACACTGGC-ATTTCCTA..................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0
...................................................................................GACAACACTGGC-ATTTCCTAC.................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
..................................................................ACTTGGACTGGATTCGTGAC....................................................................................................................................................................................................................................	20	4	0.50	2	0	1	0	1	0
..................................................................ACTTGGACTGGATTCGTGACA...................................................................................................................................................................................................................................	21	4	0.50	2	0	0	0	2	0
.....................................................................TGGACTGGATTCGTGACAACACTGG............................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	2	0
.......................................................................GACTGGATTCGTGACAAC.................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0
........................................................................ACTGGATTCGTGACAACACTGG............................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	1	0
.............................................................................ATTCGTGACAACACTGGC-ATT.......................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0
........................................................................ACTGGATTCGTGACAACACTGGC-ATT.......................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0
..........................................................................TGGATTCGTGACAACACTGGC-ATTT......................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
.......................................................................GACTGGATTCGTGACAACACTGG............................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	1	0
......................................................................GGACTGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
..................................................................ACTTGGACTGGATTCGTGACAA..................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	1	0
.....................................................................TGGACTGGATTCGTGACAACACTG.............................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	1	0
....................................................................TTGGACTGGATTCGTGACAACACTG.............................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	1	0
..................................................................ACTTGGACTGGATTCGTGACAACACTG.............................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	1	0
.......................................................................GACTGGATTCGTGACAACACTG.............................................................................................................................................................................................................................	22	4	0.25	1	0	0	1	0	0
........................................................................ACTGGATTCGTGACAACACTG.............................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0
....................................................................TTGGACTGGATTCGTGACAACACT..............................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	1	0
...................................................................CTTGGACTGGATTCGTGACAACACTGGC-..........................................................................................................................................................................................................................	28	4	0.25	1	0	0	0	1	0
.............................................................................ATTCGTGACAACACTGGC-A.........................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	1	0
..............................................................................TTCGTGACAACACTGGC-ATTTC.....................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	1	0
....................................................................TTGGACTGGATTCGTGACAACACTGG............................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0
...................................................................CTTGGACTGGATTCGTGACAACACTG.............................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0

droVir3

CATCCTTCGGCCATTGGGAGGGCTGCACTGCCGGCCAACCTGCTGGCTTCACCCGTGTCACTGGCTACTTTGACTGGATTCGTGACAACACTGGT-ATCTCCTACTAAATGG-AT--A--------------A----------TTCGAACATAATAAAC-------A----CTT------AA--------AA--------------GCACACAAGT----CT--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................CAACACTGGT-ATCTCCTACTAAATGG-AT--.....................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGGAGGGCTGCACTGCC..........................................................................................................................................................................................................................................................................................	20	3	2.00	6	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............TTGGGAGGGCTGCACTGCCGG........................................................................................................................................................................................................................................................................................	21	3	1.33	4	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ACTAAATGG-AT--A--------------A----------TTCGA......................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TACTAAATGG-AT--A--------------A----------TTCGAA.....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TGTCACTGGCTACTTTGACTG..............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................TACTTTGACTGGATTCGTGACAACAC...............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CTACTAAATGG-AT--A--------------A----------TTCG.......................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CTACTAAATGG-AT--A--------------A----------TTCGAAC....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CATTGGGAGGGCTGCACTGCCGGC.......................................................................................................................................................................................................................................................................................	24	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AATAAAC-------A----CTT------AA--------AA--------------GCACACAA....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CTGGATTCGTGACAACACTGG............................................................................................................................................................................................................................	21	3	1.00	3	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CTAAATGG-AT--A--------------A----------TTCGAACATAATA..............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GG-AT--A--------------A----------TTCGAACATAAT...............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGCACTGCCGGCCAACCTGCT..............................................................................................................................................................................................................................................................................	21	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AT--A--------------A----------TTCGAACATAATAAAC-------A----CTT------A.....................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACATAATAAAC-------A----CTT------AA--------AA--------------............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................AAAC-------A----CTT------AA--------AA--------------GCACACAAGT----..............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ACTAAATGG-AT--A--------------A----------TTCGAACAT..................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AATAAAC-------A----CTT------AA--------AA--------------GCAC........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................G-AT--A--------------A----------TTCGAACATAATAAAC-------A----CTT------......................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CTACTTTGACTGGATTCGTGA.....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TAATAAAC-------A----CTT------AA--------AA--------------GCACAT......................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CTGGATTCGTGACAACACTGGT-..........................................................................................................................................................................................................................	22	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CTACTAAATGG-AT--A--------------A----------TTCGAACATA.................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATAATAAAC-------A----CTT------AA--------AA--------------GC..........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TGGCTACTTTGACTGGATTCG........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TTCACCCGTGTCACTGGCTAC......................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATTCGTGACAACACTGGT-..........................................................................................................................................................................................................................	18	3	0.67	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCCTTCGGCCATTGGGAGGG....................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCCTTCGGCCATTGGGAGGGC...................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GATTCGTGACAACACTGGT-..........................................................................................................................................................................................................................	19	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TCACCCGTGTCACTGGCTACT.....................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCTTCGGCCATTGGGAGGGC...................................................................................................................................................................................................................................................................................................	20	3	0.67	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGGAGGGCTGCACTGCCGGC.......................................................................................................................................................................................................................................................................................	23	3	0.67	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCTTCGGCCATTGGGAGGGCT..................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CATTGGGAGGGCTGCACTGCC..........................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTCGGCCATTGGGAGGGC...................................................................................................................................................................................................................................................................................................	19	3	0.67	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTCGGCCATTGGGAGGGCTGCACTGCC..........................................................................................................................................................................................................................................................................................	28	3	0.67	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ACAACACTGGT-ATCTCCTACT................................................................................................................................................................................................................	21	3	0.67	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTCGGCCATTGGGAGGGCTG.................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TGCTGGCTTCACCCGTGT................................................................................................................................................................................................................................................................	18	3	0.67	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGGAGGGCTGCACTGCCG.........................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGGAGGGCTGCACTGCCGG........................................................................................................................................................................................................................................................................................	22	3	0.67	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ACTGGT-ATCTCCTACTAAATGG-A........................................................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AACACTGGT-ATCTCCTACTAAATGG-.........................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CTGGT-ATCTCCTACTAAATGG-.........................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TGGT-ATCTCCTACTAAATGG-A........................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACTGCCGGCCAACCTGCTG.............................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTCGGCCATTGGGAGGGCTGC................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CAACACTGGT-ATCTCCTACC................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GCTGGCTTCACCCGTGTCACTGG..........................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CCAACCTGCTGGCTTCACCCG...................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GAGGGCTGCACTGCCGGCCAACCT.................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GACAACACTGGT-ATCTCCTACTAAATG...........................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CCTGCTGGCTTCACCCGTGTCACT............................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GGGAGGGCTGCACTGCCGG........................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CTGCTGGCTTCACCCGTGTCACTGGCTA.......................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTCGGCCATTGGGAGGGG...................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCTTCGGCCATTGGGAGG.....................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCCTTCGGCCATTGGGAGGGC...................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................GATTCGTGACAACACTGGT-AT........................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTGGGAGGGCTGCACTGC...........................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGACAACACTGGT-ATCTCCTAC.................................................................................................................................................................................................................	22	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGCACTGCCGGCCAACCTGCTGGCTTC........................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CATCCTTCGGCCATTGGGA.......................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...CCTTCGGCCATTGGGAGGGCTGCACTGCC..........................................................................................................................................................................................................................................................................................	29	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CACTGCCGGCCAACCTGCTGGC...........................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ACCTGCTGGCTTCACCCG...................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTGGGAGGGCTGCACTGCC..........................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TGCTGGCTTCACCCGTGTCA..............................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GCTGGCTTCACCCGTGTCA..............................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CTGGCTTCACCCGTGTCACTG...........................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................GACTGGATTCGTGACAACACTGGT-..........................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................TGGCTTCACCCGTGTCACTGG..........................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTCGGCCATTGGGAGGGCTGCACTGCC..........................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGGGAGGGCTGCACTGCCGGC.......................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGGCTTCACCCGTGTCACTGGC.........................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AACACTGGT-ATCTCCTACT................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................GGATTCGTGACAACACTGGT-AT........................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ACTGGATTCGTGACAACACTGGT-..........................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TGCTGGCTTCACCCGTGTCACC............................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CATCCTTCGGCCATTGGGAGG.....................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GTGACAACACTGGT-ATCTCCTACT................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CGTGACAACACTGGT-ATCTCC....................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATTCGTGACAACACTGGT-ATCTCCTA..................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CACTGGT-ATCTCCTACTAAAT............................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTTCGGCCATTGGGAGGG....................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTCGTGACAACACTGGT-ATCTCCTACT................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................ACACTGGT-ATCTCCTACTAAATG...........................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTCGGCCATTGGGAGGGCTG.................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGGAGGGCTGCACTGCCGGCC......................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................TGCTGGCTTCACCCGTGTCAC.............................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CCAACCTGCTGGCTTCACCC....................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CATCCTTCGGCCATTGGGAG......................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CAACCTGCTGGCTTCACCCGTGTC...............................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCTTCGGCCATTGGGAGGGCTG.................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................ACCTGCTGGCTTCACCCGTGT................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GACAACACTGGT-ATCTCCT...................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ACACTGGT-ATCTCCTACTA...............................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTGGGAGGGCTGCACTGC...........................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CAACCTGCTGGCTTCACCCGT..................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GGAGGGCTGCACTGCCGGCC......................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CACTGCCGGCCAACCTGCTGG............................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CCAACCTGCTGGCTTCACCCGT..................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GCTGGCTTCACCCGTGTCAC.............................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................GCTGCACTGCCGGCCAACCT.................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CACTGCCGGCCAACCTGCTGGCTT.........................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTTGACTGGATTCGTGACC...................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CATCCTTTGGTCATTGGGACGGCTGCACTGCCGGCCAACCCGCTGGCTTCACTCGCGTCACTGGCTACCTGGACTGGATTCGTGACAATACTGGT-ATCTCCTACTAAATGG-AA--TACTT--------TTA----------------AATAATAAAT-------A----TTG------AAAGCTTATG-----------GCAA-A-----AA----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.ATCCTTTGGTCATTGGGACG.....................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	1	0
.....................GCTGCACTGCCGGCCAACCCGCT..............................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.......................TGCACTGCCGGCCAACCCGCT..............................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	1
...........................................................................GGATTCGTGACAATACTGG............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................CTGGATTCGTGACAATACTGGT-..........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............................................CTTCACTCGCGTCACTGG..........................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................T-------A----TTG------AAAGCTTATG-----------GCAA-A-----......................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................GCTGCACTGCCGGCCAACCCGCTGGC...........................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
CATCCTTTGGTCATTGGGACGGC...................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................TGGATTCGTGACAATACTGGT-..........................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................GGCTACCTGGACTGGATTCGT.......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................CACTGGCTACCTGGACTGGATTCGT.......................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........CATTGGGACGGCTGCACTGCCGGC.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..TCCTTTGGTCATTGGGACGGCTG.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......TTGGTCATTGGGACGGCTG.................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............GGGACGGCTGCACTGCCGGC.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.ATCCTTTGGTCATTGGGACGG....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................ATACTGGT-ATCTCCTACTAAATGG-AA--T....................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................CTGGATTCGTGACAATACTGGT-ATCTC.....................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................ATAAAT-------A----TTG------AAAGCTTATG-----------GC...............................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................GCTTCACTCGCGTCACTGGCT........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....CTTTGGTCATTGGGACGGC...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................CGCTGGCTTCACTCGCGTC...............................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................ACTGGT-ATCTCCTACTAAATGG-AA--T....................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0

droGri2

CATCCTTTGGCCACTGGGCTGGCTGCACTGTTGGAGAGCCGGCGGGCTTTACCCGAGTCTCTGGCTACCTGGACTGGATTCGGGACAACACTGGC-ATCTCCTACTAAGCGATGAATT-A-------CT-C----TA------A-----ATAAATATAT-------A----TAT------TA--------AA--------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

TCTCTTTCGGCTCCTCCGCCGGTTGCCTGTCCAACGGACCCAAGGGCATGGTCCGCGTCACCAGCTACTTGGACTGGATCCGCGACCACACTGGC-ATCGCTTACTACTAAG-C-ACT-TTT--------CTA--------------------------AATAAATAT----TG------AAG-CTTTA-A-------A-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................GATCCGCGACCACACTGGC-AT........................................................................................................................................................................................................................	21	5	4.20	21	17	3	0	0	0	1
.............................................................................ATCCGCGACCACACTGGC-AT........................................................................................................................................................................................................................	20	5	3.80	19	16	1	1	0	1	0
............................................................................GATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	19	5	2.60	13	5	7	1	0	0	0
..............................................................AGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	21	2	2.00	4	1	2	1	0	0	0
........................................................GTCACCAGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	27	2	2.00	4	2	2	0	0	0	0
...........................................................ACCAGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	24	2	1.50	3	2	1	0	0	0	0
.........................................................................CTGGATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	22	2	1.50	3	0	2	1	0	0	0
..........................................................CACCAGCTACTTGGACTGGATCC.........................................................................................................................................................................................................................................	23	2	1.50	3	1	2	0	0	0	0
............................................................CCAGCTACTTGGACTGGATC..........................................................................................................................................................................................................................................	20	2	1.50	3	1	2	0	0	0	0
............................................................................GATCCGCGACCACACTGGC-ATC.......................................................................................................................................................................................................................	22	4	1.25	5	3	2	0	0	0	0
.............................................................................ATCCGCGACCACACTGGC-A.........................................................................................................................................................................................................................	19	5	1.20	6	5	1	0	0	0	0
.......................................................CGTCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................CGTCACCAGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
......................................................GCGTCACCAGCTACTTGGACTGGATCC.........................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................CGCGTCACCAGCTACTTGGACT...............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..............................CCAACGGACCCAAGGGCATGGT......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................GGACTGGATCCGCGACCACACTGGC-ATC.......................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................GACCACACTGGC-ATCGCTT...................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................CGCGTCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
........................................................................................................................TT--------CTA--------------------------AATAAATAT----TG------AAG-C.................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................CTGGATCCGCGACCACACTGGC-ATCGC.....................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............................CAACGGACCCAAGGGCATGG.......................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................TGTCCAACGGACCCAAGGGCA..........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................CCACACTGGC-ATCGCTTACTACTA............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................TGCCTGTCCAACGGACCCAAGGGCATG........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..TCTTTCGGCTCCTCCGCCGGT...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................GTCCAACGGACCCAAGGGCAT.........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................TTACTACTAAG-C-ACT-TTT--------CT......................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	21	2	1.00	2	1	1	0	0	0	0
................................................TGGTCCGCGTCACCAGCTACT.....................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................GTTGCCTGTCCAACGGACCCAAGGG............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................ACCCAAGGGCATGGTCCGC..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................GATCCGCGACCACACTGGC-A.........................................................................................................................................................................................................................	20	5	1.00	5	4	1	0	0	0	0
...............................CAACGGACCCAAGGGCATG........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................ATCCGCGACCACACTGGC-ATCGCTTACT................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........................................................................GGATCCGCGACCACACTGGC-ATCGC.....................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................GCCTGTCCAACGGACCCAAGG.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................................................................TACTTGGACTGGATCCGCGACCACACT..............................................................................................................................................................................................................................	27	2	1.00	2	0	2	0	0	0	0
..........................................................CACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0
.............................................GCATGGTCCGCGTCACCAGCTACTT....................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................ATGGTCCGCGTCACCAGCTACTT....................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................GCATGGTCCGCGTCACCAGC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...........................................................................GGATCCGCGACCACACTGGC-AT........................................................................................................................................................................................................................	22	5	1.00	5	4	1	0	0	0	0
..........CTCCTCCGCCGGTTGCCTGTCCAACGGAC...................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0
..............................................................AGCTACTTGGACTGGATCC.........................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0
.............CTCCGCCGGTTGCCTGTCCAACGG.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................CACCAGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	25	2	1.00	2	1	1	0	0	0	0
...................................................................................GACCACACTGGC-ATCGCTTACTACT.............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................TCCGCGTCACCAGCTACTTGG..................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.CTCTTTCGGCTCCTCCGCCGGTTGCC...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
....................................................CCGCGTCACCAGCTACTTGGACTGGATC..........................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
......................................CCCAAGGGCATGGTCCGCGTCACC............................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................AGCTACTTGGACTGGATC..........................................................................................................................................................................................................................................	18	2	1.00	2	1	1	0	0	0	0
.............................................................................ATCCGCGACCACACTGGC-ATCGC.....................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................T-TTT--------CTA--------------------------AATAAATAT----TG------AAG-C.................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................GCCTGTCCAACGGACCCAAGGG............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................GTCACCAGCTACTTGGACT...............................................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0
...........................................................................GGATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	20	5	0.80	4	1	3	0	0	0	0
..........................................................................TGGATCCGCGACCACACTGGC-AT........................................................................................................................................................................................................................	23	5	0.60	3	2	0	0	0	0	1
..........................................................................TGGATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	21	5	0.60	3	1	2	0	0	0	0
..............................................................AGCTACTTGGACTGGATCCGCGA.....................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
..........................................................CACCAGCTACTTGGACTGGATC..........................................................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
..........................................................CACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
.....................................................................TGGACTGGATCCGCGACCACACTGG............................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
...................................................................CTTGGACTGGATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
.............................................................................ATCCGCGACCACACTGGC-ATC.......................................................................................................................................................................................................................	21	4	0.50	2	2	0	0	0	0	0
.........................................................................CTGGATCCGCGACCACACTGGC-AT........................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
............................................................CCAGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
.........................................................TCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGATCC.........................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
............................................................CCAGCTACTTGGACTGGATCCGCGA.....................................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.................................................................TACTTGGACTGGATCCGCGACCA..................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
......................................................................GGACTGGATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
....................................................................TTGGACTGGATCCGCGACCACACTG.............................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.......................................................................GACTGGATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
........................................................GTCACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0
.............................................................CAGCTACTTGGACTGGATC..........................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0
..........................................................CACCAGCTACTTGGACTGGATCCGCGAC....................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
..............................................................AGCTACTTGGACTGGATCCGCGAC....................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
.......................................................................GACTGGATCCGCGACCACACA..............................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	1
.....................................................................TGGACTGGATCCGCGACCA..................................................................................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
.......................................................................GACTGGATCCGCGACCACA................................................................................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
.............................................................................ATCCGCGACCACACTGGC-ATCC......................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
..............................................................................TCCGCGACCACACTGGC-ATC.......................................................................................................................................................................................................................	20	4	0.25	1	1	0	0	0	0	0
...........................................................................GGATCCGCGACCACACTGGC-ATC.......................................................................................................................................................................................................................	23	4	0.25	1	1	0	0	0	0	0
................................................................................CGCGACCACACTGGC-ATC.......................................................................................................................................................................................................................	18	4	0.25	1	1	0	0	0	0	0
...............................................................................CCGCGACCACACTGGC-AT........................................................................................................................................................................................................................	18	5	0.20	1	1	0	0	0	0	0
...........................................................................GGATCCGCGACCACACTGGC-A.........................................................................................................................................................................................................................	21	5	0.20	1	1	0	0	0	0	0
..........................................................................TGGATCCGCGACCACACTGG............................................................................................................................................................................................................................	20	5	0.20	1	1	0	0	0	0	0
..............................................................................TCCGCGACCACACTGGC-AT........................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0
..............................................................................TCCGCGACCACACTGGC-A.........................................................................................................................................................................................................................	18	5	0.20	1	1	0	0	0	0	0
............................................................................GATCCGCGACCACACTGG............................................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0
.............................................................................ATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0
.............................................................................ATCCGCGACCACACTGGC-AC........................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0
..........................................................................TGGATCCGCGACCACACTGGC-A.........................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0

droBip1

TCTCCTTCGGCTCCTCCGCCGGTTGCCTGTCCAACGGACCCAAGGGAATGGTCCGCGTCACCAGCTACTTGGACTGGATCCGCGACCACACTGGC-ATCGCTTACTACTAAG-C-AAT-TTT--------CTA--------------------------AATAAATTT----TG------AAG-CTTTTAAAA-------AC-AAAT-AGCTAAGT----CT--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCTCGTTTGGTTCCTCCGCCGGCTGCCTGTCGAATGGTCCCAAGGGAATGGTGCGTGTCACTAGCTACTTGGACTGGATCCGCGATCACACTGGA-ATTGCTTACTAAGCGG-GA--T---T--------TTA--------------------------AATAAACTT---TTG--ATATG--------AA------ATTTGAAG-A-----AATT----TG--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCTCCTTCGGCTCCTCCGCCGGCTGCCTCTCGAACGGACCCAAGGGCATGGTGCGCGTCACCAGTTACCTGGACTGGATCCGCGACCACACTGGC-ATTTCCTACTAGAGGG-AA--A---A--------CTAAAT------------ACAGATTGATT-------A----TAT------A--------AAAT-------TAAAA-A-----AATGTGATTT--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCTCCTTCGTCTCCGCCGCCGGCTGCCAGTCCGGAGCTCCCGCCGTCTTCACCCGCGTCACCGGGTACCTGGACTGGATCCGCGACAACACCGGC-ATCGCCTACTAAATGT-GC--A--------------A----------ATG-----TAAAAAAT-------T----TTT------T--------T-------AATTCAAT-A-----AATT----TG--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTCCTTCGGCTCCTCCGCCGGCTGCTTGTCCAACGGTCCCAAGGGAATGGTGCGCGTCACCAGCTACCTGGACTGGATTCGCGACCACACTGGC-ATCTCTTACTAACAAG-TT------TC--------TT--------------------------AATAAACTT---TTGTGAAT--------------TGAATATGTAAA-A-----AATGTGG--T--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCTCCTTCGGCTCCGTCGAGGGTTGCCTTTCCAACAGCCCCAAGGGAATGACTCGTGTGTCCAGCTACTTGGACTGGATCCGCGACAACACGGGC-ATTTCCTACTAATAAA-AT------CCGCCTTGT-----TT--------A-------------AATAAA----------------------------AGAAAT-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGAATGGTCCGCGTCACCAGCTACCTGGACTGGATCCGCGACCACACTGGC-ATCTCTTACTAAAGAG-TT--T---A--------TTG--------------------------AATAAACTA---TTGCGAAA--------------TGAAAA-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCAACTTCGTTTCTTCCAACGGCTGCCAGTCTGGAGCTCCTGCTGGATTCCAGCGCGTCACCTATCACTTGGACTGGATCCGTGACCACACCGGT-ATTTCCTACTAACTGT-CT--T--------------A----------A----------------ATAAGTATATAAAT------C----ATTTG-----------AAAA-GCATTCGTTT----TC--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCTCCTTCGGCTCCGCCGCGGGATGCCTGTCCAACAGCCCCAAAGGATTGACCCGAGTGACCGGTTACTTGGACTGGATCCGCGACCATACTGGC-ATTTCTTACTAATAAA-GT------TCGCTATTT-----TGAGAAAT--------------------------------------------------TAAACGAATAAA-A-----AAGT----TC--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........GGCTCCGCCGCGGGATGCCTGTC...........................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
.....................................CCCCAAAGGATTGACCCGAGT................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGACTGGATCCGCGAC....................................................................................................................................................................................................................................	19	3	3.33	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAACAGCCCCAAAGGATTGACCCGAGT................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AGCCCCAAAGGATTGACCCGAGT................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................TACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	18	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTCCTTCGGCTCCGCCGCT......................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TACTTGGACTGGATCCGCG......................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................ACTTGGACTGGATCCGCGAC....................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TACTTGGACTGGATCCGCGA.....................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................ACTTGGACTGGATCCGCGG.....................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GGACTGGATCCGCGACCA..................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AGAAAT--------------------------------------------------TAAACGAATAAA-C-----CT....................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGTCCTTCGGCTCCGCCGAGGGATGCCTGTCCAACAGCCCCAAGGGATTGACCCGAGTGACCGGTTACTTGGACTGGATTCGCGACCATACTGGC-ATTTCTTACTAATAAA-GT------TCGCCATTT-----TGAGAAAT--------------------------------------------------TAAA---------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................TTACTTGGACTGGATTCGCGACC...................................................................................................................................................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TACTTGGACTGGATTCGCGACCATACT..............................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GTGACCGGTTACTTGGACTGGAT...........................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................ACTTGGACTGGATTCGCGACCATACTGG............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TTGGACTGGATTCGCGACCA..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TACTTGGACTGGATTCGC.......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GGACTGGATTCGCGACCATACTGGC-ATTTC.....................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................TACTTGGACTGGATTCGCGACC...................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TTACTTGGACTGGATTCGCGACCATACT..............................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CTGGATTCGCGACCATACTGGC-ATTTC.....................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CTTGGACTGGATTCGCGACCATACC..............................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGTCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGTGCGCGTCACCAGTTACCTGGACTGGATCCGCGACCACACTGGC-ATCTCTTACTAAATAA-AT--G--------------A----------TTT-------------AATAAAATA---AAG------C--------A-------ATTATAAA-A-----AAAA----CC--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................CTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	19	1	8.00	8	1	0	7	0
........................GCCTCTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	23	1	8.00	8	0	0	8	0
..........................CTCTCCAACGGTCCCAAGGGTATGGT......................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	6	0
...............................................ATGGTGCGCGTCACCAGTTACCTGGA.................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	5	0
..........................CTCTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	5	0
....................GGCTGCCTCTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	4	0
..........................CTCTCCAACGGTCCCAAGG.............................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0
....................................................GCGCGTCACCAGTTACCTGGA.................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
..........................CTCTCCAACGGTCCCAAGGGTAT.........................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
..............................CCAACGGTCCCAAGGGTATGGT......................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
...............................................ATGGTGCGCGTCACCAGTTACCTGGACT...............................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0
...............................................ATGGTGCGCGTCACCAGTTACCTGGACTG..............................................................................................................................................................................................................................................	29	1	2.00	2	0	0	2	0
.........................................................................CTGGATCCGCGACCACACTGGC-..........................................................................................................................................................................................................................	22	2	1.50	3	0	0	3	0
..................................................................ACCTGGACTGGATCCGCGACCACACTG.............................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...............................CAACGGTCCCAAGGGTATGGT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...............................................ATGGTGCGCGTCACCAGTTACCTGG..................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
................................AACGGTCCCAAGGGTATG........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.......................TGCCTCTCCAACGGTCCCAAGGGTATG........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
............................CTCCAACGGTCCCAAGGGTATG........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
......................................CCCAAGGGTATGGTGCGCGTCAC.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.............................TCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..................................................GTGCGCGTCACCAGTTACCTGGA.................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.....................................................................................CCACACTGGC-ATCTCTTACTAAAT............................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
....................................................GCGCGTCACCAGTTACCTGGACTGG.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1
..............................................................................................................AA-AT--G--------------A----------TTT-------------AATAAAATA---AAG------C--------A-------.....................................................................................................................	23	1	1.00	1	0	0	1	0
.......................TGCCTCTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.............................................GTATGGTGCGCGTCACCAGTTACCTGGA.................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
........................GCCTCTCCAACGGTCCCAAGGGTATG........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...............................................................GTTACCTGGACTGGATCCGCGA.....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
....................................GTCCCAAGGGTATGGTGCGCGTCACCAGTT........................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	1	0
..........................CTCTCCAACGGTCCCAAGGGTATG........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...............................CAACGGTCCCAAGGGTATGG.......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................TCTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................CCTCTCCAACGGTCCCAAGGGTATGGT......................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
....................................................GCGCGTCACCAGTTACCTGGACT...............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.....................GCTGCCTCTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...................................GGTCCCAAGGGTATGGTGCGC..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
............................CTCCAACGGTCCCAAGGG............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................CCTCTCCAACGGTCCCAAGGGT...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.........................CCTCTCCAACGGTCCCAAGGGTAT.........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
............................CTCCAACGGTCCCAAGGGTATGGT......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..............................................................AGTTACCTGGACTGGATCCGCGACC...................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...............................................ATGGTGCGCGTCACCAGTTACCTGGACTGG.............................................................................................................................................................................................................................................	30	1	1.00	1	0	0	1	0
...............................................ATGGTGCGCGTCACCAGTTACCTG...................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..............................CCAACGGTCCCAAGGGTAT.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................AATAA-AT--G--------------A----------TTT-------------AATAAAATA---AAG------C--------A-------.....................................................................................................................	26	1	1.00	1	0	0	1	0
.................................................................TACCTGGACTGGATCCGCGAC....................................................................................................................................................................................................................................	21	3	0.67	2	0	0	2	0
.................................................................TACCTGGACTGGATCCGCGACCA..................................................................................................................................................................................................................................	23	3	0.67	2	0	0	2	0
..................................................................ACCTGGACTGGATCCGCGAC....................................................................................................................................................................................................................................	20	3	0.67	2	0	0	2	0
.................................................................TACCTGGACTGGATCCGCGACC...................................................................................................................................................................................................................................	22	3	0.67	2	0	0	2	0
.......................................................................GACTGGATCCGCGACCACACTG.............................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0
................................................................................CGCGACCACACTGGC-ATCTCT....................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0
...................................................................CCTGGACTGGATCCGCGAC....................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0
....................................................................CTGGACTGGATCCGCGACC...................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0
.................................................................TACCTGGACTGGATCCGCG......................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0
..................................................................ACCTGGACTGGATCCGCGACC...................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0
..................................................................ACCTGGACTGGATCCGCGA.....................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0
.................................................................TACCTGGACTGGATCCGCGACCAC.................................................................................................................................................................................................................................	24	3	0.33	1	0	0	1	0

droYak3

TGTCCTTCGGTTCCGCCGACGGCTGCCTGTCCAACGGCCCCAAGGGATTGACCCGAGTGACCGGCTACTTGGACTGGATCCGTGACCACACCGGC-ATTTCCTACTAATATA-TT------TCGCCAATT-----TAAGGAAA--------------------------------------------------TAAATG-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........GTTCCGCCGACGGCTGCCTGTC...........................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	1	0	0	0	0	0
.......CGGTTCCGCCGACGGCTGCCT..............................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................GACCGGCTACTTGGACTGGATCCGT.......................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........GTTCCGCCGACGGCTGCCT..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................TTGACCCGAGTGACCGGCTACTTGGACTG..............................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................CCAAGGGATTGACCCGAGTGACCGGCT........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................GTGACCACACCGGC-ATTTCC....................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................ATATA-TT------TCGCCAATT-----TAAGG..............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....TTCGGTTCCGCCGACGGCTGCCTGT............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................GGCTACTTGGACTGGATCCGT.......................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................GATTGACCCGAGTGACCGG..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................CAAGGGATTGACCCGAGTGACC............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................GACCGGCTACTTGGACTGGATCCGC.......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................GGACTGGATCCGTGACCACACCGGC-..........................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................ACTGGATCCGTGACCACACCGGC-..........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................GACCGGCTACTTGGACTGGATC..........................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................GTGACCGGCTACTTGGACTGGA............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................ATATA-TT------TCGCCAATT-----TAAGGAAA--------------------------------------------------T........................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TGGATCCGTGACCACACCGGC-..........................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TGTCCTTCGGATCCGCCTTGGGATGCCTGTCCAACAGTCCCAAGGGATTGACCCGAGTGACCAGCTACTTGGACTGGATCCGTGACCATACTGGC-ATTTCTTACTAATAAG-TT------TCGCCATTT-----CAAGAAAA--------------------------------------------------TAAACG-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................CCCAAGGGATTGACCCGAGT................................................................................................................................................................................................................................................................	20	1	4.00	4	2	1	0	0	1	0	0
....................................GTCCCAAGGGATTGACCCGAGT................................................................................................................................................................................................................................................................	22	1	4.00	4	1	0	0	1	2	0	0
.GTCCTTCGGATCCGCCTTGGG....................................................................................................................................................................................................................................................................................................	21	1	3.00	3	2	1	0	0	0	0	0
............................GTCCAACAGTCCCAAGGGATT.........................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	1	0	0	0
................................................................CTACTTGGACTGGATCCGTG......................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	1	0	0	0
.....................GATGCCTGTCCAACAGTCCCAAGGGATT.........................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0	0
...CCTTCGGATCCGCCTTGG.....................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
..........................................................GACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	18	2	2.00	4	4	0	0	0	0	0	0
...........................................................................................................ATAAG-TT------TCGCCATTT-----CAAGAA.............................................................................................................................................................................	22	1	2.00	2	1	1	0	0	0	0	0
..........................................................GACCAGCTACTTGGACTGGATCCGT.......................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
..............................................................AGCTACTTGGACTGGATCCGT.......................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
.......................................................................GACTGGATCCGTGACCATACTGGC-..........................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0
...................................AGTCCCAAGGGATTGACCCGAGT................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................CTAATAAG-TT------TCGCCATTT-----CAAGAA.............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
..........................CTGTCCAACAGTCCCAAGGGATT.........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
....................................GTCCCAAGGGATTGACCCGAGTG...............................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..............................CCAACAGTCCCAAGGGATTGACCC....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................GCCATTT-----CAAGAAAA--------------------------------------------------TAAAC....................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................G-TT------TCGCCATTT-----CAAGAAA............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.....................GATGCCTGTCCAACAGTCCCAA...............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...........................................................ACCAGCTACTTGGACTGGATCCG........................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
............................................................................GATCCGTGACCATACTGGC-A.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...CCTTCGGATCCGCCTTGGG....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..............GCCTTGGGATGCCTGTCC..........................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
....................................GTCCCAAGGGATTGACCCGAGTGACCAGC.........................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..........................................................GACCAGCTACTTGGACTGGATCC.........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
......TCGGATCCGCCTTGGGATGCCTGTCCA.........................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
................................AACAGTCCCAAGGGATTGACCCGAGT................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................................................................................CGTGACCATACTGGC-ATTTCT....................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................................................GACCAGCTACTTGGACTGGATCCGTG......................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............................CCAACAGTCCCAAGGGATTGACCCGAGT................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...........................................................ACCAGCTACTTGGACTGGATCCGT.......................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..TCCTTCGGATCCGCCTTGGGATG.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
............................................................CCAGCTACTTGGACTGGATCC.........................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.GTCCTTCGGATCCGCCTTGG.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................CCAGCTACTTGGACTGGATCCGT.......................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................TACTAATAAG-TT------TCGCCATTT-----CAAGA..............................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................GACTGGATCCGTGACCATACTGG............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................GTCCCAAGGGATTGACCCGAGTGA..............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
............................................GGATTGACCCGAGTGACCAG..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...............................................................GCTACTTGGACTGGATCCGT.......................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................GTGACCAGCTACTTGGACTG..............................................................................................................................................................................................................................................	20	2	1.00	2	2	0	0	0	0	0	0
......................................................................................................TACTAATAAG-TT------TCGCCATTT-----CAAG...............................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
.............................TCCAACAGTCCCAAGGGATTGACCCGA..................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
........................................................................ACTGGATCCGTGACCATACTGGC-..........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................GATTGACCCGAGTGACCAGC.........................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.........................................................................CTGGATCCGTGACCATACTGGC-ATTTC.....................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
............................................................................GATCCGTGACCATACTGGC-..........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
..............................................ATTGACCCGAGTGACCAGC.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................ATTTCTTACTAATAAG-TT------TCGCCATTT-----...................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.......................................................................GACTGGATCCGTGACCATACTGGC-ATTTC.....................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
................................................................................................ATTTCTTACTAATAAG-TT------TCGCC............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
......................ATGCCTGTCCAACAGTCCCAAG..............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................TAAG-TT------TCGCCATTT-----CAAGA..............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
..........ATCCGCCTTGGGATGCCTGTCCA.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0
.........................................................TGACCAGCTACTTGGACTGGATCC.........................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................GACCAGCTACTTGGACTGGATCCGTGAC....................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.......................................................................GACTGGATCCGTGACCATA................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................TTTCTTACTAATAAG-TT------TCGCCATTT-----CAA................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
TGTCCTTCGGATCCGCCTTGGG....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................TACTAATAAG-TT------TCGCCAT..........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................CGCCATTT-----CAAGAAAA--------------------------------------------------TAAAC....................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
..........................................................GACCAGCTACTTGGACTGGAT...........................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
...........................................................ACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0
..........................................................GACCAGCTACTTGGACTGG.............................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0	0

dpe_1507

scaffold_35:96574-96724 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-8.9	-8.7	-8.5