ID:

dpe_1494

 Coordinate:

scaffold_339:16370-16634 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.3 -15.3 -15.3

Flybase annnotation

exon [dper_GLEANR_1941:3]; CDS [Dper\GL17617-cds]; CDS [Dper\GL17617-cds]; exon [dper_GLEANR_1941:2]; intron [Dper\GL17617-in]

No Repeatable elements found

mature
  1. scaffold_389:2859-2884 +
  2. scaffold_627:5791-5816 +
  3. scaffold_178:5019-5044 +
  4. scaffold_6:2146335-2146360 +
  5. scaffold_86:6987-7012 +
  6. scaffold_248:5384-5409 +
  7. scaffold_248:5861-5886 +
  8. scaffold_248:12268-12293 +
  9. scaffold_248:12741-12766 +
  10. dpe_1494  scaffold_339:16487-16512 +
  11. scaffold_339:16962-16987 +
  12. scaffold_520:3868-3893 +
  13. scaffold_520:4341-4366 +
  14. scaffold_520:10603-10628 +
  15. scaffold_918:3426-3451 +
  16. scaffold_918:3903-3928 +
  17. scaffold_4919:322-347 +
  18. scaffold_5298:1177-1202 +
  19. scaffold_5573:448-473 -
  20. scaffold_6281:5-30 +
star
  1. scaffold_389:2779-2803 +
  2. scaffold_72:234246-234270 -
  3. scaffold_6:2146255-2146279 +
  4. scaffold_86:6907-6931 +
  5. scaffold_86:48084-48108 +
  6. scaffold_1239:1727-1751 +
  7. scaffold_114:50944-50968 -
  8. scaffold_531:47227-47251 +
  9. scaffold_248:5780-5804 +
  10. scaffold_248:12187-12211 +
  11. scaffold_339:15932-15956 +
  12. dpe_1494  scaffold_339:16406-16430 +
  13. scaffold_3372:2543-2567 -
  14. scaffold_520:10522-10546 +
  15. scaffold_918:3822-3846 +
  16. scaffold_4919:241-265 +
  17. scaffold_474:7806-7830 -
  18. scaffold_5298:1096-1120 +
  19. scaffold_8294:44-68 +
  20. scaffold_8675:201-225 +

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGGTCACTCTGGCCAAGAATAACCATCAAGTTCTTGTGATGGATCTGCTGTATGTCTAGTGATTATAAGATAACACCCTGTTGTGTCCAGGAACGTGAGAATTGCGGATAAACACACAATCGCTTATCTTCATCGGTACTTAGGCGTTGGTTGCGTTTTATTTCCTATTTGCAAAAGGAGGTTAATACATTTTATTCTTATATGTATCTACTCACGCTTCGTCTTTTCTCCCCGCTCTTTTATCGACAGCTCAAACTATTGTTACCTTCTTGTCTTTTCATATTGTGACCATTTTTCTTCTTGTCTTTTCATAGTGTGATCATTTTTCTTCTCTTTTTGCTCATTGGGGATACCCATGGATATC
**************************************************************************************((((((((.((((((..((((.......((.(((.((((((..............))))))))))))))))))))))))))..........))).............**************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V042
embryo
.......................................................................................................................................................................ATTTGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................ 26 0 20 0.70 14 14 0 0 0
.............................................................................................................................................................TTTATTTCCTATTTGCAAAAGGAGG....................................................................................................................................................................................... 25 0 20 0.55 11 11 0 0 0
......................................................................................TCCAGGAACGTGAGAATTGCGGATA.............................................................................................................................................................................................................................................................. 25 0 20 0.45 9 9 0 0 0
..........................................................................................................................................ACTTAGGCGTTGGTTGCGTTTTAT........................................................................................................................................................................................................... 24 0 20 0.20 4 4 0 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGCGTTTTATT.......................................................................................................................................................................................................... 26 0 20 0.20 4 4 0 0 0
.......................................................................................................................................................................ATTTGCAAAAGGAGGTTAATACATT............................................................................................................................................................................. 25 0 20 0.20 4 4 0 0 0
......................................................................................TCCAGGAACGTGAGAATTGCGGAT............................................................................................................................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGC.................................................................................................................................................................................................................. 18 0 20 0.15 3 0 0 3 0
.............................................................................................................................................................TTTATTTCCTATTTGCAAAAGGAGGT...................................................................................................................................................................................... 26 0 20 0.15 3 3 0 0 0
......................................................................................................................................................................TATTTGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................ 27 0 20 0.15 3 3 0 0 0
..........................................................................................................................................................................TGCAAAAGGAGGTTAATACATTTTA.......................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGCGTTTTA............................................................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0
..............................................................................................................................................................TTATTTCCTATTTGCAAAAGGAGG....................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
......................................................................................TCCAGGAACGTGAGAATTGCGGATAAA............................................................................................................................................................................................................................................................ 27 0 20 0.10 2 2 0 0 0
........................................................................................CAGGAACGTGAGAATTGCGGATAAA............................................................................................................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0
.......................................................................................CCAGGAACGTGAGAATTGCGGATAAA............................................................................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0 0
........................................................................................................................................................................TTTGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0
..........................................................................................................................................................................TGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................ 23 0 20 0.10 2 2 0 0 0
......................................................................................TCCAGGAACGTGAGAATTGCGGATAA............................................................................................................................................................................................................................................................. 26 0 20 0.10 2 1 0 0 1
.......................................................................................CCAGGAACGTGAGAATTGCGGATA.............................................................................................................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0
..........................................................................................................................................................................TGCAAAAGGAGGTTAATACATTTTAT......................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0
........................................................................................................................................................TGCGTTTTATTTCCTATTTGCAAAAGG.......................................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0
..........................................................................................................................................................................TGCAAAAGGAGGTTAATACATTTTATA........................................................................................................................................................................ 27 1 20 0.10 2 2 0 0 0
.......................................................................................................................................GGTACTTAGGCGTTGGTTGC.................................................................................................................................................................................................................. 20 0 20 0.10 2 0 2 0 0
..................................................................................TGTGTCCAGGAACGTGAGAAT...................................................................................................................................................................................................................................................................... 21 0 13 0.08 1 0 1 0 0
....................................................................................TGTCCAGGAACGTGAGAATT..................................................................................................................................................................................................................................................................... 20 0 13 0.08 1 0 1 0 0
.................................................................................TTGTGTCCAGGAACGTGAGAA....................................................................................................................................................................................................................................................................... 21 0 13 0.08 1 0 1 0 0
..................................................................................TGTGTCCAGGAACGTGAGAATTGCG.................................................................................................................................................................................................................................................................. 25 0 13 0.08 1 0 1 0 0
..................................................................................TGTGTCCAGGAACGTGAGA........................................................................................................................................................................................................................................................................ 19 0 19 0.05 1 0 1 0 0
...............................................................................TGTTGTGTCCAGGAACGTGAG......................................................................................................................................................................................................................................................................... 21 0 19 0.05 1 0 1 0 0
.............................................................................................................................................................ATTATTTCCTATTTGCAAAAGGAGGT...................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0
.....................................................................................................................................TCGGTACTTAGGCGTTGGTTGCGT................................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0
.........................................................................................................................................................................TTGCAAAAGGAGGTTAATACATTTAAA......................................................................................................................................................................... 27 2 20 0.05 1 1 0 0 0
........................................................................................CAGGAACGGGAGAATTGCGGATAAA............................................................................................................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0
.............................................................................................................................TATCTTCATCGGTACTTAGGCG.......................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
........................................................................................CAGGAACGTGAGAATTGCG.................................................................................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGCGTTT.............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0
................................................................................................TGAGAATTGCGGATAAACACACAAT.................................................................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0
.....................................................................................GTCCAGGAACGTGAGAATTGCGGA................................................................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0
.................................................................................................................................TTCATCGGTACTTAGGCGTTGGTTGCGT................................................................................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0
..............................................................................................................................ATCTTCATGGGTACTTAGGCGTTGG...................................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
......................................................................................TCCAGGAACGTGAGAATTGCGAAT............................................................................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
.........................................................................................................................................TACTTAGGAGTTGGTTGCGTTTT............................................................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0
......................................................................................TCCAGGAACGTGGGAATTG.................................................................................................................................................................................................................................................................... 19 1 20 0.05 1 0 1 0 0
.................................................................................................................................TTCATCGGTACTTAGGCGTTGGTTGCG................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................ATTTGCAAAAGGAGGTTAATA................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGCGTTA.............................................................................................................................................................................................................. 22 1 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................CACGCTTAGTCTTTTCTCCCCGCTCT.............................................................................................................................. 26 1 20 0.05 1 1 0 0 0
..........................................................................................GGAACGTGAGAATTGCGGATA.............................................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0
.....................................................................................GTCCAGGAACGTGAGAATT..................................................................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................ATTTGCAAAAGGAGGTTAATACATTTTA.......................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................TATTTCCTATTTGCAAAAGGAGGT...................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................TTTGCAAAAGGAGGTTAATACAAA............................................................................................................................................................................. 24 2 20 0.05 1 1 0 0 0
......................................................................................................................................................................TATTTGCAAAAGGAGGTTAATACAT.............................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
........................................TGGATCTGCTGTATGTCTAGTGA.............................................................................................................................................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0
.............................................................................................................................................................TTTATTTCATATTTGCAAAAGGAGG....................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
.............................................................................................................................................TAGGCGTTGGTTGCGTTTTATTTCCTATT................................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0
.......................................................................................CCAGGAACGTGAGAATTGCGG................................................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGCGTTTT............................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGCGTTTTAAAA......................................................................................................................................................................................................... 27 3 20 0.05 1 1 0 0 0
.............................................................................................................................................................TTTATTTCCTATTTGCAAAAGGA......................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
...............................TTCTTGTGATGGATCTGCTGTATG...................................................................................................................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
.....................................................................................GTCCAGGAACGTGAGAATTGCGGATA.............................................................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
..............................................................................................................................................................TTATTTCCTATTTGCAAAAGGAGGTTA.................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
................................TCATGTCATGGATCTGCT........................................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0
........................................TGGATCTGCTGTATGTCTAGTGATTA........................................................................................................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
.........................................................................................................................................TACTTAGGCGTTGGTTGCGT................................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
...............................................................................................................................................GGCGTTGGTTGCGTTTTATTTCCTATT................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
........................................................................................................................................................TGCGTTTTATTTCCTATTTGCAAAAGA.......................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
.......................................................................................CCAGGAACGTGAGAATTGCGGAT............................................................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CACCAGTGAGACCGGTTCTTATTGGTAGTTCAAGAACACTACCTAGACGACATACAGATCACTAATATTCTATTGTGGGACAACACAGGTCCTTGCACTCTTAACGCCTATTTGTGTGTTAGCGAATAGAAGTAGCCATGAATCCGCAACCAACGCAAAATAAAGGATAAACGTTTTCCTCCAATTATGTAAAATAAGAATATACATAGATGAGTGCGAAGCAGAAAAGAGGGGCGAGAAAATAGCTGTCGAGTTTGATAACAATGGAAGAACAGAAAAGTATAACACTGGTAAAAAGAAGAACAGAAAAGTATCACACTAGTAAAAAGAAGAGAAAAACGAGTAACCCCTATGGGTACCTATAG
****************************************************************************************************************************************************************************((((((((.((((((..((((.......((.(((.((((((..............))))))))))))))))))))))))))..........))).............************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
................................................................................................................TGTGTGTTAGCGAATAGAAGT........................................................................................................................................................................................................................................ 21 0 20 0.55 11 11 0
..............................................................................................................................................................................................................................................................................................................................................AAAAACGCGGAACCCCTA............. 18 2 18 0.11 2 2 0
.....................................................................................................................GTTAGCGAATAGAAGTAGCCATGAATCC............................................................................................................................................................................................................................ 28 0 20 0.05 1 1 0
..........................................................................................................CCTATTTGTGTGTTAGCGAAT.............................................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0
............................................................................................................................................................................GTTTTCCTCCAATTATGTAAAAT.......................................................................................................................................................................... 23 0 20 0.05 1 0 1
..............................................................................................................TTTGTGTGTTAGCGAATAGAAGTAGC..................................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0
......................................................................................................................................................................ATAAACGTTTTCCTCCAATTATGTAA............................................................................................................................................................................. 26 0 20 0.05 1 0 1
..............................................................................................................TTTGTGTGTTAGCGAATAGAAGTAG...................................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0
.........................................................................................................................................................................AACGTTTTCCTCCAATTATGTAAA............................................................................................................................................................................ 24 0 20 0.05 1 0 1
..............................................................................................................................................................................................................TAGAATAGTGCGTAGCAGA............................................................................................................................................ 19 3 20 0.05 1 1 0
........................................................................................................................................................................................................................................................................................................................ATCACACTAGTTACATGAAG................................. 20 3 20 0.05 1 0 1
...............................................................................................................TTGTGTGTTAGCGAATAGA........................................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0
...........................................................................................................................................................................CGTTTTCCTCCAATTATGTAAA............................................................................................................................................................................ 22 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_339:16320-16684 + dpe_1494 GTGGTCACTCTGGCCAAGAATAACCATCAAGTTCTTGTGATGGATCTGCTGTATGTCTAGTGATTATAAGATAACACCCTGTTGTGTCCAGGAACGTGAGAATTGCGGATAAACACACAATCGCTTATC---------TTCATCGGTACTTAGGCGTTGGTTGCGTTTTATTTCCTATTTGCAAAAGGAGGTTAATACATTTTATTCTTATATGTATCTACTCACGCTTCGTCTTTTCTCCCCGCTCTTTTATCGACAGCTCAAACTATTGTTACCTTCTTGTCTTTTCATATTGTGACCATTTTTCTTCTTGTCTTTTCATAGTGTGATCATTTTTCTTCTCTTTTTGCTCATTGGGGATACCCATGGATATC
dp5 Unknown_singleton_2783:1739-2073 + GTGGTCACTCTGGCCAAGAATAACCATCAAGTTCTTATGATAGATCTGTTATATGTCTAGTGATTATAAGATAACACCATGTTGTGTCCAGGAACGTGAGAATTGCGGATAAACACACAATCGCATATCACAAACGCAT-------------GGCGTTGGTTGCGTTTTATTTCCTATTTGCAAAAGGAGGTTAATACATTTTATTCTTATATGTATCTACGCACGCTTCGTCTTTTCTCCCCGCTCGTTTATCGACTGCTCAAACTAATGTGACCTTCTTGTCTTTTCATATTGTGACCATTTTTCTTCTTGTCTTTTCATAGTGTGATCATTTTTCTTATCTTTTT--------------------------
droWil2 scf2_1100000004909:8282540-8282608 - GTGGTAACATTGGCTAAGAACAATCATCATGTTTTGGTTCTTAACACACTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12726:1033022-1033090 - GTAGTAACGCTGGCCAAAAACAATCATCATGTGCTCGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:9129818-9129886 + GTCGTAACACTGGCCAAGAACAATCATCATGTTCTTGTCCTGAACACCCTGTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:5465021-5465089 - GTGGTTACGTTGGCCAAAAACAATCATCATGTGCTCGTTCTGAATACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13248:3479203-3479271 - GTGGTGACCCTCGCCAAGAACAATCATCATGTTCTGGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396431:789450-789518 + GTGGTGACCCTCGCCAAGAACAATCATCATGTTCTGGTCTTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302344:1434083-1434151 + GTGGTAACGCTGGCCAAGAACAATCATCATGTTCTGGTTCTCAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453829:1036973-1037041 + GTGGTTACGCTGGCCAAGAACAATCATCATGTTCTTGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491006:2593694-2593762 + GTGGTTACGCTGGCCAAGAACAACCATCATGTTCTAGTTCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000763611:50866-50934 - GTGGTGACGCTGGCCAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:5025543-5025611 + GTGGTGACGCTGGCCAAGAACAACCATCATGTTCTGGTCTTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415211:143999-144067 + GTGGTGACGCTGGCCAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409032:906761-906829 - GTGGTGACGCTGGCCAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:9064786-9064854 + GTGGTTACGCTGGCAAAGAATAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:8610934-8611002 + GTGGTTACGCTGGCAAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_34:424223-424291 + GTGGTTACGCTGGCAAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:12251957-12252025 - GTGGTTACACTGGCAAAGAACAATCATCATGTTCTAGTTCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:6052973-6053041 - GTGGTTACGCTGGCAAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GTGGTCACTCTGGCCAAGAATAACCATCAAGTTCTTGTGATGGATCTGCTGTATGTCTAGTGATTATAAGATAACACCCTGTTGTGTCCAGGAACGTGAGAATTGCGGATAAACACACAATCGCTTATC---------TTCATCGGTACTTAGGCGTTGGTTGCGTTTTATTTCCTATTTGCAAAAGGAGGTTAATACATTTTATTCTTATATGTATCTACTCACGCTTCGTCTTTTCTCCCCGCTCTTTTATCGACAGCTCAAACTATTGTTACCTTCTTGTCTTTTCATATTGTGACCATTTTTCTTCTTGTCTTTTCATAGTGTGATCATTTTTCTTCTCTTTTTGCTCATTGGGGATACCCATGGATATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................ATTTGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................26200.70140140000
......................................................................................................................................................................TTTATTTCCTATTTGCAAAAGGAGG.......................................................................................................................................................................................25200.55110110000
......................................................................................TCCAGGAACGTGAGAATTGCGGATA.......................................................................................................................................................................................................................................................................25200.459090000
...................................................................................................................................................ACTTAGGCGTTGGTTGCGTTTTAT...........................................................................................................................................................................................................24200.204040000
..................................................................................................................................................TACTTAGGCGTTGGTTGCGTTTTATT..........................................................................................................................................................................................................26200.204040000
................................................................................................................................................................................ATTTGCAAAAGGAGGTTAATACATT.............................................................................................................................................................................25200.204040000
......................................................................................TCCAGGAACGTGAGAATTGCGGAT........................................................................................................................................................................................................................................................................24200.153030000
..................................................................................................................................................TACTTAGGCGTTGGTTGC..................................................................................................................................................................................................................18200.153300000
......................................................................................................................................................................TTTATTTCCTATTTGCAAAAGGAGGT......................................................................................................................................................................................26200.153030000
...............................................................................................................................................................................TATTTGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................27200.153030000
...................................................................................................................................................................................TGCAAAAGGAGGTTAATACATTTTA..........................................................................................................................................................................25200.102020000
..................................................................................................................................................TACTTAGGCGTTGGTTGCGTTTTA............................................................................................................................................................................................................24200.102020000
.......................................................................................................................................................................TTATTTCCTATTTGCAAAAGGAGG.......................................................................................................................................................................................24200.102020000
......................................................................................TCCAGGAACGTGAGAATTGCGGATAAA.....................................................................................................................................................................................................................................................................27200.102020000
........................................................................................CAGGAACGTGAGAATTGCGGATAAA.....................................................................................................................................................................................................................................................................25200.102020000
.......................................................................................CCAGGAACGTGAGAATTGCGGATAAA.....................................................................................................................................................................................................................................................................26200.102020000
.................................................................................................................................................................................TTTGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................25200.102020000
...................................................................................................................................................................................TGCAAAAGGAGGTTAATACATTT............................................................................................................................................................................23200.102020000
......................................................................................TCCAGGAACGTGAGAATTGCGGATAA......................................................................................................................................................................................................................................................................26200.102011000
.......................................................................................CCAGGAACGTGAGAATTGCGGATA.......................................................................................................................................................................................................................................................................24200.102020000
...................................................................................................................................................................................TGCAAAAGGAGGTTAATACATTTTAT.........................................................................................................................................................................26200.102020000
.................................................................................................................................................................TGCGTTTTATTTCCTATTTGCAAAAGG..........................................................................................................................................................................................27200.102020000
...................................................................................................................................................................................TGCAAAAGGAGGTTAATACATTTTATA........................................................................................................................................................................27200.102020000
................................................................................................................................................GGTACTTAGGCGTTGGTTGC..................................................................................................................................................................................................................20200.102000002
..................................................................................TGTGTCCAGGAACGTGAGAAT...............................................................................................................................................................................................................................................................................21130.081000001
....................................................................................TGTCCAGGAACGTGAGAATT..............................................................................................................................................................................................................................................................................20130.081000001
.................................................................................TTGTGTCCAGGAACGTGAGAA................................................................................................................................................................................................................................................................................21130.081000001
..................................................................................TGTGTCCAGGAACGTGAGAATTGCG...........................................................................................................................................................................................................................................................................25130.081000001
..................................................................................TGTGTCCAGGAACGTGAGA.................................................................................................................................................................................................................................................................................19190.051000001
...............................................................................TGTTGTGTCCAGGAACGTGAG..................................................................................................................................................................................................................................................................................21190.051000001
..............................................................................................................................................TCGGTACTTAGGCGTTGGTTGCGT................................................................................................................................................................................................................24200.051000001
.............................................................................................................................TATC---------TTCATCGGTACTTAGGCG..........................................................................................................................................................................................................................22200.051010000
........................................................................................CAGGAACGTGAGAATTGCG...........................................................................................................................................................................................................................................................................19200.051010000
..................................................................................................................................................TACTTAGGCGTTGGTTGCGTTT..............................................................................................................................................................................................................22200.051010000
................................................................................................TGAGAATTGCGGATAAACACACAAT.............................................................................................................................................................................................................................................................25200.051000001
.....................................................................................GTCCAGGAACGTGAGAATTGCGGA.........................................................................................................................................................................................................................................................................24200.051010000
..........................................................................................................................................TTCATCGGTACTTAGGCGTTGGTTGCGT................................................................................................................................................................................................................28200.051000001
..........................................................................................................................................TTCATCGGTACTTAGGCGTTGGTTGCG.................................................................................................................................................................................................................27200.051000001
................................................................................................................................................................................ATTTGCAAAAGGAGGTTAATA.................................................................................................................................................................................21200.051000001
..................................................................................................................................................TACTTAGGCGTTGGTTGCGTTA..............................................................................................................................................................................................................22200.051010000
..........................................................................................GGAACGTGAGAATTGCGGATA.......................................................................................................................................................................................................................................................................21200.051000001
.....................................................................................GTCCAGGAACGTGAGAATT..............................................................................................................................................................................................................................................................................19200.051010000
................................................................................................................................................................................ATTTGCAAAAGGAGGTTAATACATTTTA..........................................................................................................................................................................28200.051010000
........................................................................................................................................................................TATTTCCTATTTGCAAAAGGAGGT......................................................................................................................................................................................24200.051010000
.................................................................................................................................................................................TTTGCAAAAGGAGGTTAATACAAA.............................................................................................................................................................................24200.051010000
...............................................................................................................................................................................TATTTGCAAAAGGAGGTTAATACAT..............................................................................................................................................................................25200.051010000
........................................TGGATCTGCTGTATGTCTAGTGA.......................................................................................................................................................................................................................................................................................................................23200.051000001
......................................................................................................................................................TAGGCGTTGGTTGCGTTTTATTTCCTATT...................................................................................................................................................................................................29200.051010000
.......................................................................................CCAGGAACGTGAGAATTGCGG..........................................................................................................................................................................................................................................................................21200.051000001
..................................................................................................................................................TACTTAGGCGTTGGTTGCGTTTT.............................................................................................................................................................................................................23200.051010000
..................................................................................................................................................TACTTAGGCGTTGGTTGCGTTTTAAAA.........................................................................................................................................................................................................27200.051010000
......................................................................................................................................................................TTTATTTCCTATTTGCAAAAGGA.........................................................................................................................................................................................23200.051010000
...............................TTCTTGTGATGGATCTGCTGTATG...............................................................................................................................................................................................................................................................................................................................24200.051000001
.....................................................................................GTCCAGGAACGTGAGAATTGCGGATA.......................................................................................................................................................................................................................................................................26200.051010000
.......................................................................................................................................................................TTATTTCCTATTTGCAAAAGGAGGTTA....................................................................................................................................................................................27200.051010000
........................................TGGATCTGCTGTATGTCTAGTGATTA....................................................................................................................................................................................................................................................................................................................26200.051000001
..................................................................................................................................................TACTTAGGCGTTGGTTGCGT................................................................................................................................................................................................................20200.051010000
........................................................................................................................................................GGCGTTGGTTGCGTTTTATTTCCTATT...................................................................................................................................................................................................27200.051010000
.................................................................................................................................................................TGCGTTTTATTTCCTATTTGCAAAAGA..........................................................................................................................................................................................27200.051010000
.......................................................................................CCAGGAACGTGAGAATTGCGGAT........................................................................................................................................................................................................................................................................23200.051010000
dp5
GTGGTCACTCTGGCCAAGAATAACCATCAAGTTCTTATGATAGATCTGTTATATGTCTAGTGATTATAAGATAACACCATGTTGTGTCCAGGAACGTGAGAATTGCGGATAAACACACAATCGCATATCACAAACGCAT-------------GGCGTTGGTTGCGTTTTATTTCCTATTTGCAAAAGGAGGTTAATACATTTTATTCTTATATGTATCTACGCACGCTTCGTCTTTTCTCCCCGCTCGTTTATCGACTGCTCAAACTAATGTGACCTTCTTGTCTTTTCATATTGTGACCATTTTTCTTCTTGTCTTTTCATAGTGTGATCATTTTTCTTATCTTTTT--------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................GACTGCTCAAACTAATGTGACCTTCT..............................................................................................2650.4020000000020
......................................................................................TCCAGGAACGTGAGAATTGCGGA.........................................................................................................................................................................................................................................................................2340.2510000000010
......................................................................................................................................................................................................................TATCTACGCACGCTTCGTCTTTTCTG......................................................................................................................................2650.2010100000000
............................................................................................................................................................................TCCTATTTGCAAAAGGAGGTTAATACATT.............................................................................................................................................................................2960.1710100000000
droWil2
GTGGTAACATTGGCTAAGAACAATCATCATGTTTTGGTTCTTAACACACTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................ATCATCATGTTTTGGTTCTTAACACACT....................................................................................................................................................................................................................................................................................................................................2811.00100010
................................................CTCTATGTTCACTGATTGCA..................................................................................................................................................................................................................................................................................................................2011.00110000
..................................TGGTTCTTAACACACTCTATGTTCACTG........................................................................................................................................................................................................................................................................................................................2811.00101000
droVir3
GTAGTAACGCTGGCCAAAAACAATCATCATGTGCTCGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................ATCATGTGCTCGTCCTGAACACCCT....................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............CAAAAACAATCATCATGTGCTC..................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
GTCGTAACACTGGCCAAGAACAATCATCATGTTCTTGTCCTGAACACCCTGTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................AACAATCATCATGTTCTTGTC...............................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
GTGGTTACGTTGGCCAAAAACAATCATCATGTGCTCGTTCTGAATACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................TCATGTGCTCGTTCTGAATACC......................................................................................................................................................................................................................................................................................................................................2211.00110
droAna3
GTGGTGACCCTCGCCAAGAACAATCATCATGTTCTGGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................AACAATCATCATGTTCTGGT................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
GTGGTGACCCTCGCCAAGAACAATCATCATGTTCTGGTCTTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTGGTAACGCTGGCCAAGAACAATCATCATGTTCTGGTTCTCAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTGGTTACGCTGGCCAAGAACAATCATCATGTTCTTGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTGGTTACGCTGGCCAAGAACAACCATCATGTTCTAGTTCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTGGTGACGCTGGCCAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTGGTGACGCTGGCCAAGAACAACCATCATGTTCTGGTCTTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTGGTGACGCTGGCCAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GTGGTGACGCTGGCCAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GTGGTTACGCTGGCAAAGAATAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................TCATCATGTTCTAGTCCTGAACA........................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCTAGTCCTGAACACCCTCTATGTT.............................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CATCATGTTCTAGTCCTGAACACCCTC...................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCTGAACACCCTCTATGTT.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTAGTCCTGAACACCCTCTA.................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCTAGTCCTGAACACCCTCTATGT..............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATCATCATGTTCTAGTCCTGAACA........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TGTTCTAGTCCTGAACACCCT....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCCTGAACACCCTCTATGTTCACTGA.......................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TCATGTTCTAGTCCTGAACACCCTCTA.................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TACGCTGGCAAAGAATAATCATCATGT......................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................AATAATCATCATGTTCTAGTCCTG............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AATCATCATGTTCTAGTCCTGAACACCC.....................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTCTAGTCCTGAACACCCTCTATGTT.............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TAATCATCATGTTCTAGTCCTGAACACC......................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGGTTACGCTGGCAAAGAATAATC.............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........TGGCAAAGAATAATCATCATGTTCTAG.................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCCTGAACACCCTCTATGT..............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TAATCATCATGTTCTAGTC...............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTGGTTACGCTGGCAAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................TCTAGTCCTGAACACCCTCTATGTT.............................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
...............................TTCTAGTCCTGAACACCCTCTATGT..............................................................................................................................................................................................................................................................................................................................2512.00200000002000000000
...GTTACGCTGGCAAAGAACAATCATCAT........................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
...GTTACGCTGGCAAAGAACAATCATCA.........................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.....TACGCTGGCAAAGAACAATCATCAT........................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.....................AATCATCATGTTCTAGTCCT.............................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.......CGCTGGCAAAGAACAATCATCATG.......................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.....TACGCTGGCAAAGAACAATCAT...........................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
.....TACGCTGGCAAAGAACAATCATCATGT......................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
droSec2
GTGGTTACGCTGGCAAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................CTAGTCCTGAACACCCTCTATGT..............................................................................................................................................................................................................................................................................................................................2311.0010100
droYak3
GTGGTTACACTGGCAAAGAACAATCATCATGTTCTAGTTCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTGGTTACGCTGGCAAAGAACAATCATCATGTTCTAGTCCTGAACACCCTCTATGTTCACTGATTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....TACGCTGGCAAAGAACAATCATCATG.......................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...............................TTCTAGTCCTGAACACCCTCTATG...............................................................................................................................................................................................................................................................................................................................2411.0011000000
.................................CTAGTCCTGAACACCCTCTATGTTCACT.........................................................................................................................................................................................................................................................................................................................2811.0011000000
.....TACGCTGGCAAAGAACAATCATCATGT......................................................................................................................................................................................................................................................................................................................................................2711.0011000000

Generated: 06/08/2015 at 04:19 PM