ID:

dpe_148

 Coordinate:

scaffold_26:101027-101083 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-59.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dpe_128  scaffold_26:101029-101048 +
  2. dpe_148  scaffold_26:101064-101083 -
star
  1. dpe_148  scaffold_26:101028-101046 -
  2. dpe_128  scaffold_26:101066-101084 +

Sense Strand Reads

TGTAAATCCCTCAGTGTAAAGAGAATTCTGGCCTGACCTGAACCAGAGTACTTGGCGCACTTGGGCAGGAGGTATGAGATGGACCTCCTGCCCAAGTGCGCCAAGTTCTCCGGGGGAGATCGTTAATGGGTGTGCAGGAGCGATTCGATGTTTTCTT
***********************************.(((...((.(((.((((((((((((((((((((((((.........)))))))))))))))))))))))).))).))))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V050
head
 V057
head
 M042
female body
..................................................CTTGGCGCACTTGGGCAGGA....................................................................................... 20 0 2 2.50 5 4 0 1
..................................................CTTGGCGCACTTGGGCAGG........................................................................................ 19 0 2 2.00 4 2 2 0
.......................................................................................CTGCCCAAGTGCGCCAAGT................................................... 19 0 2 0.50 1 0 1 0
...................................................TTGGCTCACTTGGGCAGGA....................................................................................... 19 1 2 0.50 1 0 0 1
..................................................CTTGGCGCGCTTGGGCAGGA....................................................................................... 20 1 2 0.50 1 0 1 0
...................................................TTGGCGCACTTGGGCAGG........................................................................................ 18 0 2 0.50 1 0 1 0
.................................................ACTTGGCGCACTTGGGCAGG........................................................................................ 20 0 2 0.50 1 0 0 1
.................................................ACTTGGCGTACTTGGGCAGGAG...................................................................................... 22 1 2 0.50 1 0 1 0
....................................................TGGCGCACTTGGGCAGGA....................................................................................... 18 0 2 0.50 1 1 0 0
..................................................CTTGGCGCACTTGAGCAGGA....................................................................................... 20 1 2 0.50 1 1 0 0
..................................................CGGGGCGCACTTGGGCAGGT....................................................................................... 20 3 14 0.07 1 0 1 0

Anti-sense strand reads

ACATTTAGGGAGTCACATTTCTCTTAAGACCGGACTGGACTTGGTCTCATGAACCGCGTGAACCCGTCCTCCATACTCTACCTGGAGGACGGGTTCACGCGGTTCAAGAGGCCCCCTCTAGCAATTACCCACACGTCCTCGCTAAGCTACAAAAGAA
************************************.(((...((.(((.((((((((((((((((((((((((.........)))))))))))))))))))))))).))).))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V050
head
 V057
head
 V042
embryo
 V111
male body		 M042
female body
...............................................CATGAACCGCGTGAACCCGTC......................................................................................... 21 0 1 11.00 11 5 5 1 0 0
................................................ATGAACCGCGTGAACCCGTC......................................................................................... 20 0 1 5.00 5 3 0 0 2 0
........................................................................................ACGGGTTCACGCGGTTCAA.................................................. 19 0 1 4.00 4 2 2 0 0 0
.....................................................................................AGGACGGGTTCACGCGGTTC.................................................... 20 0 2 2.50 5 4 0 0 0 1
.......................................................................................GACGGGTTCACGCGGTTCAA.................................................. 20 0 1 2.00 2 0 2 0 0 0
.....................................................................................AGGACGGGTTCACGCGGTTCAA.................................................. 22 0 1 2.00 2 0 0 2 0 0
......................................................................................GGACGGGTTCACGCGGTTC.................................................... 19 0 2 2.00 4 2 2 0 0 0
......................................................................................GGACGGGTTCACGCGGTTCAA.................................................. 21 0 1 1.00 1 0 1 0 0 0
..............................................TCATGAACCGCGTGAACCCGTC......................................................................................... 22 0 1 1.00 1 1 0 0 0 0
......................................................................................TGACGGGTTCACGCGGTGCAA.................................................. 21 2 1 1.00 1 0 1 0 0 0
..............................................TCATGAACCGGGTGAACACGTC......................................................................................... 22 2 1 1.00 1 0 0 1 0 0
...............................................TATGAACCGCGTGAACCCGTC......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................................................ACGGGTACACGCGGTTCAA.................................................. 19 1 1 1.00 1 1 0 0 0 0
................................................ATGCACCGCGTGAACCCGTC......................................................................................... 20 1 1 1.00 1 1 0 0 0 0
.................................................TGAACCGCGTGAACCCGTC......................................................................................... 19 0 2 0.50 1 0 1 0 0 0
....................................................................................GAGGACGGGTTCATGCGGTTCA................................................... 22 1 2 0.50 1 0 1 0 0 0
.....................................................................................AGGACGGGTTCGCGCGGTTC.................................................... 20 1 2 0.50 1 0 1 0 0 0
.....................................................................................AGGACGGGTTCACGCGGT...................................................... 18 0 2 0.50 1 1 0 0 0 0
......................................................................................GGACGGGTTCACGCGGTT..................................................... 18 0 2 0.50 1 0 1 0 0 0
.....................................................................................AGGACGAGTTCACGCGGTTC.................................................... 20 1 2 0.50 1 1 0 0 0 0
.....................................................................................AGGACGGGTTCACTCGGTT..................................................... 19 1 2 0.50 1 0 0 0 0 1
......................................................................................GGACGGGTTCACGCGGTTCA................................................... 20 0 2 0.50 1 0 0 0 0 1
.....................................................................................TGGACGGGTTCACGCGGGGC.................................................... 20 3 14 0.07 1 0 1 0 0 0
...........................................................................................GGTTCACGCAGTTCGAGA................................................ 18 2 20 0.05 1 0 0 0 0 1
.................................................................................................CGCGCTTCAATCGGCCCC.......................................... 18 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_26:100977-101133 - dpe_148 TGTAAATCCCTCAGTGTAAAGAGAATTCTGGCCTGACCTGAACCAGAGTACTTGGCGCACTTGGGCAGGAGGTATGAGATGGACCTCCTG-CCCAAGTGCGCCAAGTTCTCCGGGGGAGATCGTTAATGGGTGTGCAGGAGCGATTCGATGTTTTC---TT
dp5 XL_group1a:494883-494952 - C---------------------------------------------------------------------------------------TT-CGCAAGTGCGCCAAGTTCTCCGGGGGAGATCGTTAATGGGTGTGCAGGAGCGATTCGATGTTTTC---TT
droAna3 scaffold_12929:1713906-1713916 + ---------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTTT---GT
droBip1 scf7180000396543:179203-179259 + C---------------------------------------------------------------------------------------TTGCTCCAGATCATCGTATTCCCCTGGGGTGGATGT-----------------CTCTTCTGTGTTCTTTGTGT
droEle1 scf7180000491011:1091594-1091605 - C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTCT---TT
droRho1 scf7180000779506:879252-879263 - C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTTT---TT
droBia1 scf7180000301760:1057026-1057037 - C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTTT---TT
droTak1 scf7180000415179:44314-44327 - T-------------------------------------------------------------------------------------------------------------------------------------------------CGATGTCTTT--CTT
droEug1 scf7180000409277:421552-421563 - C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTCT---TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGTAAATCCCTCAGTGTAAAGAGAATTCTGGCCTGACCTGAACCAGAGTACTTGGCGCACTTGGGCAGGAGGTATGAGATGGACCTCCTG-CCCAAGTGCGCCAAGTTCTCCGGGGGAGATCGTTAATGGGTGTGCAGGAGCGATTCGATGTTTTC---TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................CTTGGCGCACTTGGGCAGGA...........................................................................................2022.505010400
..................................................CTTGGCGCACTTGGGCAGG............................................................................................1922.004000220
.......................................................................................CTG-CCCAAGTGCGCCAAGT......................................................1920.501000010
...................................................TTGGCGCACTTGGGCAGG............................................................................................1820.501000010
.................................................ACTTGGCGCACTTGGGCAGG............................................................................................2020.501010000
....................................................TGGCGCACTTGGGCAGGA...........................................................................................1820.501000100
dp5
C---------------------------------------------------------------------------------------TT-CGCAAGTGCGCCAAGTTCTCCGGGGGAGATCGTTAATGGGTGTGCAGGAGCGATTCGATGTTTTC---TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droAna3
---------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTTT---GTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
C---------------------------------------------------------------------------------------TTGCTCCAGATCATCGTATTCCCCTGGGGTGGATGT-----------------CTCTTCTGTGTTCTTTGTGTSizeHit CountTotal NormTotal
No Reads
droEle1
C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTCT---TTSizeHit CountTotal NormTotal
No Reads
droRho1
C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTTT---TTSizeHit CountTotal NormTotal
No Reads
droBia1
C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTTT---TTSizeHit CountTotal NormTotal
No Reads
droTak1
T-------------------------------------------------------------------------------------------------------------------------------------------------CGATGTCTTT--CTTSizeHit CountTotal NormTotal
No Reads
droEug1
C--------------------------------------------------------------------------------------------------------------------------------------------------GATGTCTCT---TTSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:37 PM