ID:

dpe_1425

 Coordinate:

scaffold_30:282203-282353 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.8 -12.4 -12.4 -12.0

Flybase annnotation

exon [dper_GLEANR_20293:1]; CDS [Dper\GL18261-cds]; intron [Dper\GL18261-in]

Repeatable elements

NameClassFamilyStrand
CR1-1_DWilLINECR1+
mature
  1. scaffold_25:906993-907013 -
  2. scaffold_1474:1423-1443 -
  3. scaffold_458:11672-11692 -
  4. scaffold_1134:660-680 -
  5. scaffold_79:121676-121696 -
  6. scaffold_76:148158-148178 -
  7. scaffold_76:220773-220793 -
  8. scaffold_16:241483-241503 -
  9. scaffold_90:159549-159569 -
  10. dpe_1425  scaffold_30:282249-282269 -
  11. scaffold_1931:5127-5147 -
  12. scaffold_299:15134-15154 -
  13. scaffold_141:30586-30606 -
  14. scaffold_586:2377-2397 -
  15. scaffold_3324:29-49 -
  16. scaffold_4643:342-362 -
  17. scaffold_5075:861-881 -
  18. scaffold_346:42046-42066 -
  19. scaffold_6285:628-648 -
  20. scaffold_8580:583-603 -
  21. scaffold_55:413907-413927 -
  22. scaffold_635:1085-1105 -
  23. scaffold_171:45245-45265 -
  24. scaffold_3:1016319-1016339 -
  25. scaffold_85:171880-171900 -
  26. scaffold_76:4406-4426 -
  27. scaffold_16:97138-97158 -
  28. scaffold_16:990904-990924 -
  29. scaffold_91:122647-122667 -
  30. scaffold_56:388235-388255 -
  31. scaffold_10761:301-321 -
  32. scaffold_729:4575-4595 -
  33. scaffold_463:11293-11313 -
  34. scaffold_97:130785-130805 -
  35. scaffold_102:36374-36394 -
  36. scaffold_2788:1324-1344 -
  37. scaffold_4452:779-799 -
  38. scaffold_6379:942-962 -
  39. scaffold_314:13380-13400 -
  40. scaffold_1548:5487-5507 -
  41. scaffold_55:359220-359240 +
  42. scaffold_110:108788-108808 +
  43. scaffold_111:49160-49180 +
  44. scaffold_368:7560-7580 +
  45. scaffold_71:96482-96502 +
  46. scaffold_71:109643-109663 +
  47. scaffold_76:15156-15176 +
  48. scaffold_43:125853-125873 +
  49. scaffold_54:323690-323710 +
  50. scaffold_54:360202-360222 +
  51. scaffold_219:11291-11311 +
  52. scaffold_2067:5345-5365 +
  53. scaffold_248:8709-8729 +
  54. scaffold_520:7141-7161 +
  55. scaffold_918:7394-7414 +
  56. scaffold_1658:389-409 +
  57. scaffold_4331:1604-1624 +
  58. scaffold_121:9525-9545 +
  59. scaffold_5939:1406-1426 +
  60. scaffold_9150:999-1019 +
star
  1. scaffold_1324:4542-4568 -
  2. dpe_1425  scaffold_30:282274-282300 -
  3. scaffold_865:1626-1652 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGACGAAGGCCGTCTCCGACTTTCTCATGGATCAACGCACACAGATAAAGGTGGGGTTGGGTTCTCCTTCGTTTTCTGAATACTACCTGGACTTGGGCTCTTTTATTATTGGACGTTGACATGCAATGACTGCATCTTTCAAGAGGCGATGCAGTTACTGCACCGTCAAGTGGCCCGTGTGACACCAGCAGAAGGCTGTTACGCGCGGATCCCAGGCAAAACGCAGCCCTCCTCCCGCCCAACCGACCGAG
*******************************************************************************************************.((.((((....((((.(((((.....)))))...))))....))))...))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V057
head
 V042
embryo
 V111
male body
............................................................................................................................................................................................CAGAAGGCTGTTACGCGCGGATC........................................ 23 0 20 22.40 448 0 448 0 0 0
......................................................................................................................................................................................CACCAGCAGAAGGCTGTTACGC............................................... 22 0 20 21.10 422 422 0 0 0 0
............................................................................................................................................................................................CAGAAGGCTGTTACGCGCGGATCCC...................................... 25 0 20 13.45 269 269 0 0 0 0
......................................................................................................................................TCTTTCAAGAGGCGATGCAGT................................................................................................ 21 0 20 3.55 71 71 0 0 0 0
........................................................................................................................................................................................................................CAAAACGCAGCCCTCCTCCCGCCC........... 24 0 20 3.10 62 62 0 0 0 0
.........................................................................................................................................................................................................CGCGCGGATCCCAGGCAAAACGCAGCCC...................... 28 0 20 0.50 10 10 0 0 0 0
............................................................................................................................AATGACTGCATCTTTCAAGAGG......................................................................................................... 22 0 20 0.45 9 9 0 0 0 0
.......................................................................................................TATTATTGGACGTTGACATGCAATGAC......................................................................................................................... 27 0 3 0.33 1 0 0 0 0 1
......................................................................................................................................................................................CACCGGCAGAAGGCTGTTACGCGCG............................................ 25 1 20 0.30 6 6 0 0 0 0
......................................................................................................................................................................................CACCAGCAGAAGGCTGGTACGCGCGG........................................... 26 1 20 0.25 5 0 0 0 5 0
........................................ACGGATAAAGGGGGGGTT................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 1 0 0
......................................................................................................................................................................................CACCAGCAGAAGGCTGTTACGCGTG............................................ 25 1 20 0.20 4 4 0 0 0 0
............................................................................................................TTGGACGTTGACATGCAATGACT........................................................................................................................ 23 0 20 0.20 4 0 4 0 0 0
.......................................................................................................................................CTTTCAAGAGGCGATGCAGTTAA............................................................................................. 23 1 20 0.20 4 4 0 0 0 0
.......................................................................................................................................CTTTCAAGAGGCGATGCAGTTACA............................................................................................ 24 1 20 0.20 4 4 0 0 0 0
.............................................TAAAGGTAGGGTGGGGTTTT.......................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0
...........................................................................................................................................................TACTGCACCGTCAAGTGGCCCGTGT....................................................................... 25 0 20 0.15 3 3 0 0 0 0
............................................................................................................................................................................................CAGAAGGCTGTTACGCGCGGAGCC....................................... 24 1 20 0.15 3 3 0 0 0 0
.....................................................................................................................................................................................TCACCAGCAGAAGGCTGTTACGCG.............................................. 24 1 20 0.15 3 3 0 0 0 0
......................................................................................................................................TCTTTCAAGAGGAGATGCAGTTACTG........................................................................................... 26 1 20 0.15 3 0 3 0 0 0
......................................................................................................................................TCTTTCAAGAGGCGATGCAG................................................................................................. 20 0 20 0.15 3 0 0 0 0 3
.....................................................................................................................................................................TCAAGTGGCCCGTGTGACACCA................................................................ 22 0 20 0.10 2 2 0 0 0 0
......................................................................................................................................................................................CTCCAGCAGAAGGCTGTTACGCGCGG........................................... 26 1 20 0.10 2 2 0 0 0 0
..........................................................................................................................................................................................................................AAACGCAGCCCTCCTCCCGCCCAACCGAC.... 29 0 20 0.10 2 2 0 0 0 0
......................................................................................................................................................................................................TTACGCGCGGATCCCAGGCAAAACGCAG......................... 28 0 20 0.10 2 2 0 0 0 0
.......................................................................................................................................CTTTCAAGAGGCGATGCAGTTACGG........................................................................................... 25 1 20 0.10 2 2 0 0 0 0
....................................................................................................................................................................................................................CAGGCAAAACGCAGCCCTCCTCCCGCC............ 27 0 20 0.10 2 2 0 0 0 0
......................................................................................................................................................................................CACCAGCAGAAGGCTGTTACGCGCGGATA........................................ 29 1 20 0.10 2 2 0 0 0 0
..................................................................................................................................................................................GTGACACCAGCAGAAGGCTGTT................................................... 22 0 20 0.10 2 2 0 0 0 0
....................................................................................................................TGACATGCAATGACTGCATCTTTCAATA........................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................TCAAGAGGCGATGCAGTTACTGCAC........................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................GACCAGAAGGCTGTTACGCGCGGA.......................................... 24 2 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................CAAGTGGCCCGTGTGACACC................................................................. 20 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................TTACTGCACCGTCAAGTGGCC............................................................................ 21 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................ATCTTTCAAGAGGCGATGCAGT................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................AGTTACTGCACCGTCAAGTGGC............................................................................. 22 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................CAGGAGGCTGTTACGCGCGGATCC....................................... 24 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................TCTTTCAAGAGGCGATGAAGTT............................................................................................... 22 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................GCACCGTCAAGTGGCCCGTGT....................................................................... 21 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................CTTTCAAGAGGCGATCCAGTTACTG........................................................................................... 25 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................CACCAGCAGGAGGCTGTTACGCGCGG........................................... 26 1 20 0.05 1 0 0 0 1 0
...........................................................................................................................................................................................GCAGAAGGCTGTTACGCGC............................................. 19 0 20 0.05 1 0 0 0 1 0
..................................................................................................................................................................................................................................CCCTCCTCCCGCCCAACCGAC.... 21 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................CACCAGCAGAAGGCTGTTACGCGCTGATC........................................ 29 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................AGAAGGCTGTTACGCGCGGATCT....................................... 23 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................GCAAAACGGAGCCCTCCTCCCGCC............ 24 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................CAGAAGGCTGTTACGCGCGGAC......................................... 22 1 20 0.05 1 0 1 0 0 0
.......................................................................................................................................CTTTCAAGCGGCGATGCAGTTACT............................................................................................ 24 1 20 0.05 1 1 0 0 0 0
................................................................................................................................ACTGCATCTTTCAATAGGCGATGA................................................................................................... 24 2 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................CACCAGCAGAAGGCTGTTACGCGCGGAC......................................... 28 1 20 0.05 1 0 0 1 0 0
..............................................................................................................................................................................................GAAGGCTGTTACGCGCTGATC........................................ 21 1 20 0.05 1 0 1 0 0 0
............................................................................................................TTGGACGTTGACATGCAAA............................................................................................................................ 19 1 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................GTCAAGTGGCCCGTGTGACACC................................................................. 22 0 20 0.05 1 0 0 0 1 0
......................................................................................................................................TCTTTCAAGAGGCGTTGCAGTTA.............................................................................................. 23 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................GCAGCCCTCCTCCCGCCCAACCGACC... 26 0 20 0.05 1 0 1 0 0 0
............................................................................................................................AATGACTGGATCTTTCAATAGGCG....................................................................................................... 24 2 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................CACCAGCAGAAAGCTGTTACGCGC............................................. 24 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................TCTTTCAAGAGGCGATGCAGTTGCTG........................................................................................... 26 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................CGGGCCCGTGTGACACCGGC.............................................................. 20 3 20 0.05 1 0 0 1 0 0
......................................................................................................................................................................................CACCAGCATGAGGCTGTTACGCGCGGA.......................................... 27 2 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................CACCAGCAGACGGCTGTTACGCGCCG........................................... 26 2 20 0.05 1 0 0 0 1 0
......................................................................................................................................TCTTTCAAGAGGCGATGCAGATACTG........................................................................................... 26 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................CACCAGCAGAAGGCTGTTACTCGCGG........................................... 26 1 20 0.05 1 0 0 0 1 0
...........................................................................................................................................................................................................................AACGCAGCCCTCCTCCCGCCCAACCGACC... 29 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TCTGCTTCCGGCAGAGGCTGAAAGAGTACCTAGTTGCGTGTGTCTATTTCCACCCCAACCCAAGAGGAAGCAAAAGACTTATGATGGACCTGAACCCGAGAAAATAATAACCTGCAACTGTACGTTACTGACGTAGAAAGTTCTCCGCTACGTCAATGACGTGGCAGTTCACCGGGCACACTGTGGTCGTCTTCCGACAATGCGCGCCTAGGGTCCGTTTTGCGTCGGGAGGAGGGCGGGTTGGCTGGCTC
************************************************************************************************.((.((((....((((.(((((.....)))))...))))....))))...))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V042
embryo
 V111
male body		 V057
head
 M021
embryo
............................................................................................................................................................................CGGGCACACTGTGGTCGTCTTCCGAC..................................................... 26 0 20 0.45 9 9 0 0 0 0
..............................................................................................................CCTGCAACTGTACGTTACTGACG...................................................................................................................... 23 0 20 0.30 6 6 0 0 0 0
..........................................................................................................................................................................ACCGGGCACACTGTGGTCGTCT........................................................... 22 0 20 0.20 4 0 4 0 0 0
..............................................................................................................................................................................GGCACACTGTGGTCGTCTT.......................................................... 19 0 20 0.15 3 3 0 0 0 0
...........................................................................................................................GTTACTGACGTAGAAAGTTCT........................................................................................................... 21 0 20 0.15 3 0 3 0 0 0
..........................................................................................................ATAACCTGCAACTGTACGTTACTGACG...................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................................................................ACACTGTGGTCGTCTTCCGAC..................................................... 21 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................................TCAATGACGTGGCAGTTCAC............................................................................... 20 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................................................................................AGGGCGGGTTGGCTGGCTC 19 0 20 0.10 2 2 0 0 0 0
............................................................................................................................TTACTGACGTAGAAAGTTCT........................................................................................................... 20 0 20 0.10 2 0 0 2 0 0
..........................................TCTATTTCCAACCCAAACT.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0
.................................................................................................................................................................................................................AGGGTCCGTTTTGCGTCGGGAG.................... 22 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................................................................TCCGTTTTGCGTCGGGAGGA.................. 20 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................CGTTACTGACGTAGAAAGTTCTC.......................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................GTTACCGACGTAGAAAGTTCT........................................................................................................... 21 1 20 0.05 1 0 0 0 0 1
...................................................................................................................................................................................................................................GGAGGAGGGCGGGTTGGC...... 18 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................CACACTGTGGTCGTCTTCCGAC..................................................... 22 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................AGAAAGTTCTCCGCTACGTCAATGACGT......................................................................................... 28 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................AGTTCACCGGGCACACTGT................................................................... 19 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................GGCACACTGTGGTCGTCTTCCGACAA................................................... 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................GGTCCGTTTTGCGTCGGGAGGAGG................ 24 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................GCGCCTAGGGTCCGTTTTGCGTC......................... 23 0 20 0.05 1 0 0 1 0 0
.......CGAGCAGAGGCTGAAAAAG................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................TCACCGGGCACACTGTGGTCGT............................................................. 22 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................GGTCGTCTTCCGACAATGCGC.............................................. 21 0 20 0.05 1 1 0 0 0 0
........................................................................................................................TACGTTACTGACGTAGAAAGTTC............................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................CCGGGCACACTGTGGTCGTCTTCC........................................................ 24 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................ATGCGCGCCTAGGGTCCGTTTTG............................. 23 0 20 0.05 1 0 0 1 0 0
....................................................................................................................................................................CAGTTCACCGGGCACAATGTGGTCG.............................................................. 25 1 20 0.05 1 1 0 0 0 0
..........................................................................................................ATAACCTGCAACTGTACGTTAC........................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_30:282153-282403 - dpe_1425 AGA--CGAAGGCCGTCTCCGACTTTCTCATGGATCAACGCACACAGATAAAGGTGGGGTTGGG-------TTCTCCT-TCGTTTTCTGAATACTACCTGGACTTGGGCTCTT--TTATTA-------------------------------------TTGGACGTTGACATGCAATGACTGCATCTTTCAAGAGGCGATGC----------------------AGTTACT--GC-----ACCGTCAAGTGGCCCGTGTGACACCAGCAGAAGG-CTGTTA-CGCGCGGATCCCA-GGCA--AA---ACGCAGCCCTCCTCCCGCCCAACCGACCGAG
dp5 Unknown_singleton_2981:36-238 - GTTGGCTGAGGTTTTTTATCATTTATTTTTA--TTA-----------------------------------------------------TTGA----TGGACCTA--------------------------------------CTTCCTTTTTTTTTATGGACGTTGACATGCAATGACTGCATCTATCAAGAGGCGATGC----------------------AATTACT--GC-----ACCGTCAAGTGGCCCGTGTGACACCAGCAGAAGG-CTGTTA-CGCGCGGATCTTA-GGCA--AA---ACGCAGCCCTCCTCCCGCCCAACCGACCGAG
droWil2 scf2_1100000004954:1943330-1943569 + ATC--A-AAACTCACAGCTAA-----------------------------GGGCACAGACGTGCCGCTGTTTTTATTTAAACTTTATAACTAATACTCAAACTCGGAACCCCGGTCATTACAACGTTATCGGTCCCGAAACGACTCCCGA--CTTTAGCGGACGTTGAC-------------------------------------------------------GATAATATGCGCAATACGTTCAAGTGGCCCCTACGACACCAGGATAAGGCCTGTTT-CGCGCGAGCCC-A-AGCA--GA---TAACTGCCCACCTCCCACCCGACCGACCGAG
droVir3 scaffold_13047:17381556-17381612 - TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCGAATCCCGATGCA--ATGTACTGCATCCCACCTCCCGCCCAACCGACCGAG
droMoj3 scaffold_6473:11866813-11866869 + AAA--CCAAAGCTCTGTCTGACTTCCTAATGGACTATCGCAAACAGATCAAGGTAAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:8498742-8498833 - GCA--C---------ATTTAAGTGGCCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATACCAAGCACGGGCTTGTTAACGCACAGACCC-A-GGCA--AA---GTGCGACCCACCTCCTGCAGAACCGACCGAG
droAna3 scaffold_13099:750126-750244 - CAT--CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACGGGGGGAGTATGCCGGGTCAAGCAGCCACCG-----------------------------GAAAGTTTGACCGGCAATAAT-TT--TT-TGCGCGGTTCCCACTGAAT-AC---GTACAGCCCACCTCCCGTCCATTCGACCGAG
droBip1 scf7180000395315:10714-10789 + TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATACTGGTATTAAA-TTTTTT-CGCGCGGGTCCCACAGCA--TA-C-ATACAGCCAACCTCTCGCCCAACCGACCGAG
droKik1 scf7180000302380:10624-10681 + CAG--AAGAGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTATCGCGCGGGCTC-C-CGC-------------TTCCACCTCCCGCCCAACCGACCGAG
droFic1 scf7180000454077:1206116-1206167 + AAA--CGAAAGCCGTCTCCGAGTTTCTCATGGATTACCGCACGCAGATCAAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491013:1131004-1131055 - AAA--CCAAGGCAGTATCCGAATTTCTGATGGACTACCGAACGCAGATCAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779333:147388-147439 - AAA--CCAAGGCCGTCTCCGAATTTCTCATGGACTACAGAACGCAGATTAAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:1227620-1227679 + AGA--CCAAGGCTGTCTCTGAGTTCCTCATGGACTACCGAACGCAGATTAAGGTGGGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG
droTak1 scf7180000415380:331513-331575 + AGC--CGTAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCG-CGCGCGAATCCCA-GGCG--AA---CA--AGCCCACCTCCCGCCCAACCGACCGAG
droEug1 scf7180000409586:9247-9359 + CCT--TCAAGCGCAATTCTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----ACCACCAGACTGCCGGAATTTCATCATCAGCGAT-TTTTTT-TTCGCGACTTCCGTTGCTTAAC---GTGCAACCCACCTCCCGCCCAACCGACCAAG
dm3 chrX:16974982-16975041 - AAA--CCAAGGCAGTATCTGAGTTCCTTATGGACTATAGGACGCAGATAAAGGTATGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG
droSim2 x:16092529-16092586 - AAA--CCAAGGCGGTCTCTGAGTTCCTCATGGATTATAGGACGCAGATAAAGGTATGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_17:808211-808268 - AAA--CCAAGGCGGTCTCTGAGTTCCTCATGGATTATAGGACCCAGATAAAGGTATGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:15586177-15586234 - AAA--CCAAGGCCGTCTCTGAATTCCTCATGGATTACAGGACGCAGATTAAGGTGTGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:7327850-7327909 - AAA--CCAAGGCAGTCTCTGAATTCCTCATGGATTATAGGACGCAGATAAAGGTGTGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGA--CGAAGGCCGTCTCCGACTTTCTCATGGATCAACGCACACAGATAAAGGTGGGGTTGGG-------TTCTCCT-TCGTTTTCTGAATACTACCTGGACTTGGGCTCTT--TTATTA-------------------------------------TTGGACGTTGACATGCAATGACTGCATCTTTCAAGAGGCGATGC----------------------AGTTACT--GC-----ACCGTCAAGTGGCCCGTGTGACACCAGCAGAAGG-CTGTTA-CGCGCGGATCCCA-GGCA--AA---ACGCAGCCCTCCTCCCGCCCAACCGACCGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................CAGAAGG-CTGTTA-CGCGCGGATC..............................................232022.4044844800000
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGC.....................................................222021.1042204220000
..........................................................................................................................................................................................................................................................................CAGAAGG-CTGTTA-CGCGCGGATCCC............................................252013.4526902690000
.......................................................................................................................................................................................TCTTTCAAGAGGCGATGC----------------------AGT...............................................................................................................21203.55710710000
.........................................................................................................................................................................................................................................................................................................CA--AA---ACGCAGCCCTCCTCCCGCCC...........24203.10620620000
.........................................................................................................................................................................................................................................................................................CGCGCGGATCCCA-GGCA--AA---ACGCAGCCC......................28200.50100100000
.............................................................................................................................................................................AATGACTGCATCTTTCAAGAGG..............................................................................................................................................22200.459090000
...................................................................................................................TATTA-------------------------------------TTGGACGTTGACATGCAATGAC..............................................................................................................................................................2730.331000001
.............................................................................................................................................................TTGGACGTTGACATGCAATGACT.............................................................................................................................................................23200.204400000
........................................................................................................................................................................................CTTTCAAGAGGCGATGC----------------------AGTTAA............................................................................................................23200.204040000
........................................................................................................................................................................................CTTTCAAGAGGCGATGC----------------------AGTTACA--.........................................................................................................24200.204040000
..................................................................................................................................................................................................................................TACT--GC-----ACCGTCAAGTGGCCCGTGT...............................................................................25200.153030000
.......................................................................................................................................................................................TCTTTCAAGAGGCGATGC----------------------AG................................................................................................................20200.153000003
...................................................................................................................................................................................................................................................TCAAGTGGCCCGTGTGACACCA........................................................................22200.102020000
.............................................................................................................................................................................................................................................................................................................AA---ACGCAGCCCTCCTCCCGCCCAACCGAC....29200.102020000
.....................................................................................................................................................................................................................................................................................TTA-CGCGCGGATCCCA-GGCA--AA---ACGCAG.........................28200.102020000
....................................................................................................................................................................................................................................................................................................CA-GGCA--AA---ACGCAGCCCTCCTCCCGCC............27200.102020000
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGCGCGGATA..............................................29200.102020000
................................................................................................................................................................................................................................................................GTGACACCAGCAGAAGG-CTGTT..........................................................22200.102020000
...........................................................................................................................................................................................TCAAGAGGCGATGC----------------------AGTTACT--GC-----AC................................................................................................25200.051010000
....................................................................................................................................................................................................................................................CAAGTGGCCCGTGTGACACC.........................................................................20200.051000010
.................................................................................................................................................................................................................................TTACT--GC-----ACCGTCAAGTGGCC....................................................................................21200.051000010
......................................................................................................................................................................................ATCTTTCAAGAGGCGATGC----------------------AGT...............................................................................................................22200.051010000
...............................................................................................................................................................................................................................AGTTACT--GC-----ACCGTCAAGTGGC.....................................................................................22200.051010000
........................................................................................................................................................................................................................................GC-----ACCGTCAAGTGGCCCGTGT...............................................................................21200.051010000
.........................................................................................................................................................................................................................................................................GCAGAAGG-CTGTTA-CGCGC...................................................19200.051001000
........................................................................................................................................................................................................................................................................................................................CCCTCCTCCCGCCCAACCGAC....21200.051010000
...........................................................................................................................................................................................................................................................................AGAAGG-CTGTTA-CGCGCGGATCT.............................................23200.051010000
..........................................................................................................................................................................................................................................................................CAGAAGG-CTGTTA-CGCGCGGAC...............................................22200.051100000
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGCGCGGAC...............................................28200.051000010
.............................................................................................................................................................TTGGACGTTGACATGCAAA.................................................................................................................................................................19200.051100000
..................................................................................................................................................................................................................................................GTCAAGTGGCCCGTGTGACACC.........................................................................22200.051001000
....................................................................................................................................................................................................................................................................................................................GCAGCCCTCCTCCCGCCCAACCGACC...26200.051100000
..............................................................................................................................................................................................................................................................................................................A---ACGCAGCCCTCCTCCCGCCCAACCGACC...29200.051010000
dp5
GTTGGCTGAGGTTTTTTATCATTTATTTTTA--TTA-----------------------------------------------------TTGA----TGGACCTA--------------------------------------CTTCCTTTTTTTTTATGGACGTTGACATGCAATGACTGCATCTATCAAGAGGCGATGC----------------------AATTACT--GC-----ACCGTCAAGTGGCCCGTGTGACACCAGCAGAAGG-CTGTTA-CGCGCGGATCTTA-GGCA--AA---ACGCAGCCCTCCTCCCGCCCAACCGACCGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGC.............................................................................................................................................262074.351487000010500138200
............................................................................................................................................................................CAATGACTGCATCTATCAAGAGGC.............................................................................................................................................242028.905780050000514590
...........................................................................................................................................................................GCAATGACTGCATCTATCAAGAGGC.............................................................................................................................................252010.00200019500000050
...........................................................................................................................................................................GCAATGACTGCATCTATCAAGAGG..............................................................................................................................................24208.95179017600000300
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGG..............................................................................................................................................25207.401480000130013500
............................................................................................................................................................................CAATGACTGCATCTATCAAGAGGCGA...........................................................................................................................................26204.859700000009430
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGCGCG..................................................25204.609209200000000
........................................................................................................................................................................................................C----------------------AATTACT--GC-----ACCGTCAAGTGGCCC...................................................................................25203.707407400000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGCGT...........................................................................................................................................28203.6072053001000900
.................................................................................................................................................................................................................................TTACT--GC-----ACCGTCAAGTGGCCC...................................................................................22202.955900580000010
............................................................................................................................................................................................................................................................CCGTGTGACACCAGCAGAAGG-...............................................................21202.855705700000000
...........................................................................................................................................................................GCAATGACTGCATCTATCAAGAGGCG............................................................................................................................................26202.454904900000000
.....................................................................................................................................................................TGACATGCAATGACTGCATCTATCA...................................................................................................................................................25201.052102100000000
...........................................................................................................................................................................GCAATGACTGCATCTATCAAGAGGCGA...........................................................................................................................................27201.002001910000000
..........................................................................................................................................................................................................................................................GCCCGTGTGACACCAGCAGAAGG-...............................................................23200.951901900000000
...............................................................................................................................................................................................................................AATTACT--GC-----ACCGTCAAGTGGC.....................................................................................22200.801601600000000
..................................................................................................................................................................................................................................TACT--GC-----ACCGTCAAGTGGC.....................................................................................19200.801600160000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGA.............................................................................................................................................26200.801601510000000
.......................................................................................................................................................................................................................................................................CAGCAGAAGG-CTGTTA-CGCGCGGATCT.............................................2730.6720200000000
.............................................................................................................................................................................AATGACTGCATCTATCAAGAGGC.............................................................................................................................................23200.601200100001100
...............................................................................................................................................................................................................................................................TGTGACACCAGCAGAAGG-CT.............................................................20200.601200120000000
..................................................................................................................................................................................................................................TACT--GC-----ACCGTCAAGTGGCCCGT.................................................................................23200.551100110000000
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGCG....................................................23200.551101100000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGCGA...........................................................................................................................................28200.501000000000100
............................................................................................................................................................................CAATGACTGCATCTATCAAGAGGCGAT..........................................................................................................................................27200.501000000001000
..........................................................................................................................................................................................................................................................GCCCGTGTGACACCAGCAGAAGG-C..............................................................24200.501000000001000
.........................................................................................................................................................................................TATCAAGAGGCGATGC----------------------AATTACT--G........................................................................................................24200.4590900000000
.........................................................................................................................................................................................................................................................................GCAGAAGG-CTGTTA-CGCGCGGA................................................22200.4080800000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCA...................................................................................................................................................20200.4080800000000
..................................................................................................................................................................................................................................................................GACACCAGCAGAAGG-CTGTTA-........................................................21200.4080800000000
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGCGCGG.................................................26200.4080000000800
...........................................................................................................................................................................................TCAAGAGGCGATGC----------------------AATTACT--GC-----AC................................................................................................25200.3570700000000
.............................................................................................................................................................................AATGACTGCATCTATCAAGAGG..............................................................................................................................................22200.3570300000400
..............................A--TTA-----------------------------------------------------TTGA----TGGACCTA--------------------------------------CTTCC.............................................................................................................................................................................................21200.3570700000000
.........................................................................................................................................................................................TATCAAGAGGCGATGC----------------------AATTACT--GC-----..................................................................................................25200.3570700000000
...........................................................................................................................................................................................................................................................CCCGTGTGACACCAGCAGAAGG-CTA............................................................25200.3570700000000
..........................................................................................................................................................................................................................................................................CAGAAGG-CTGTTA-CGCGCGGATCT.............................................2430.3310100000000
.............................................................................................................................................................................AATGACTGCATCTATCAAGAGGCGATG.........................................................................................................................................27200.3060000001500
............................................................................................................................................................TATGGACGTTGACATGCAATGACTGC...........................................................................................................................................................26110.2730000001110
.......................................................................................................................................................................................................................................................................CAGCAGAAGG-CTGTTA-CGCGCGGAC...............................................25200.2550050000000
.........................................................................................................................................................................ATGCAATGACTGCATCTATCAAGAA...............................................................................................................................................25200.2550500000000
..................................TA-----------------------------------------------------TTGA----TGGACCTA--------------------------------------CTTCCTT...........................................................................................................................................................................................21200.2550500000000
...........................................................................................................................................................................................................................................................CCCGTGTGACACCAGCAGAAGG-CT.............................................................24200.2550000000500
........................................................................................................................................................................................................................................................................AGCAGAAGG-CTGTTA-CGCG....................................................19200.2550300020000
........................ATTTTTA--TTA-----------------------------------------------------TTGA----TGGACCT.........................................................................................................................................................................................................................................2140.2511000000000
.........................TTTTTA--TTA-----------------------------------------------------TTGA----TGGACCTA--------------------------------------..................................................................................................................................................................................................2140.2510000000010
......................................................................................................................................................................................................................................................................CCAGCAGAAGG-CTGTTA-CGCGCGG.................................................24200.2040000000040
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGCGAA..........................................................................................................................................29200.2040000000400
...........................................................................................................................................................................GCAATGACTGCATCTATCAAC.................................................................................................................................................21200.2040400000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGCC............................................................................................................................................27200.2040120001000
.........................................................................................................................................................................................................................................................GGCCCGTGTGACACCAGCAGAAGG-C..............................................................25200.1530000000300
...............................................................................................................................................................................................................................................................TGTGACACCAGCAGAAGG-CTGTTT-........................................................24200.1530000300000
.......................................................................................................................................................................................................................................................GTGGCCCGTGTGACACCAGCAGAAG.................................................................25200.1530300000000
.....................................................................................................................................................................TGACATGCAATGACTGCATCTATCAAGA................................................................................................................................................28200.1530300000000
............................................................................................................................................................................................CAAGAGGCGATGC----------------------AATTACT--G........................................................................................................21200.1530300000000
............................................................................................................................................................................................CAAGAGGCGATGC----------------------AATTACT--GC-----ACCG..............................................................................................26200.1530300000000
......................................................................................................................................................................................................................................................................CCAGCAGAAGG-CTGTTA-CGCG....................................................21200.1530300000000
...................................................................................................................................................................................................................................................................ACACCAGCAGAAGG-CTGTTA-........................................................20200.1530300000000
......................................................................................................................................................................................................TGC----------------------AATTACT--GC-----ACCGTCAAGTGG......................................................................................24200.1530000000030
...............................................................................................................................................................................................................................................................TGTGACACCAGCAGAAGG-CTGTTA-CG......................................................26200.1530030000000
.....................................................................................................................................................................................................ATGC----------------------AATTACT--GC-----ACCGTCAAGTGG......................................................................................25200.1530300000000
.......................................................................................................................................................................................................................................................GTGGCCCGTGTGACACCAGCAGAAGG-...............................................................26200.1530300000000
......................................................................................................................................................................................................TGC----------------------AATTACT--GC-----ACCGTCAAG.........................................................................................21200.1530000000030
..............................................................................................................................................................................................................................................................................................................A---ACGCAGCCCTCCTCCCGC.............19200.1530300000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGT.............................................................................................................................................26200.1020000200000
.....................................................................................................................................................................TGACATGCAATGACTGCATCTATCAAG.................................................................................................................................................27200.1020000000200
...............................................................................................................................................................................................................................................................TGTGACACCAGCAGAAGG-CTGTTA-G.......................................................25200.1020100000100
..................................................................................................................................................................CGTTGACATGCAATGACTGCATCTA......................................................................................................................................................25200.1020200000000
..............................................................................................................................................................................................................................................................GTGTGACACCAGCAGAAG.................................................................18200.1020200000000
............................................................................................................................................................................CAATGACTGCATCTATCAAGAG...............................................................................................................................................22200.1020100100000
...............................................................................................................................................................................................................................................ACCGTCAAGTGGCCCGTGTG..............................................................................20200.1020100010000
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGCGCGGAT...............................................28200.1020000200000
........................................................................................................................................................................................................C----------------------AATTACT--GC-----ACCGTCAAGTGGCCCA..................................................................................26200.1020200000000
............................................................................................................................................................................................................................................................CCGTGTGACACCAGCAGAAG.................................................................20200.1020000000020
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGCGC...........................................................................................................................................28200.1020020000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGCGAT..........................................................................................................................................29200.1020000000020
..............................................................................................................................................................................................AGAGGCGATGC----------------------AATTACT--G........................................................................................................19200.1020200000000
.........................................................................................................................................................................................................................................................................................................................CCTCCTCCCGCCCAACCGACC...21200.1020200000000
...........................................................................................................................................................................GCAATGACTGCATCTATCAAGAGGT.............................................................................................................................................25200.1020200000000
........................................................................................................................................................................................................................................................................AGCAGAAGG-CTGTTA-CGCGCG..................................................21200.1020000020000
.................................................................................................................................................................................................................................................................TGACACCAGCAGAAGG-CTGTTA-CGC.....................................................25200.1020000200000
...........................................................................................................................................................................................................................................................................................................................TCCTCCCGCCCAACCGACC...19200.1020200000000
...................................A-----------------------------------------------------TTGA----TGGACCTA--------------------------------------CTTCCTT...........................................................................................................................................................................................20200.1020200000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGCT............................................................................................................................................27200.1020000100100
...........................................................................................................................................................................................................................................................CCCGTGTGACACCAGCAGAAGG-CTGT...........................................................26200.1020020000000
..................................................................................................................................................................................................................................TACT--GC-----ACCGTCAAGTGGCCCGTGTGA.............................................................................27200.1020020000000
......................................................................................................................................................................................................TGC----------------------AATTACT--GC-----ACCGTCAAGTT.......................................................................................23200.1020200000000
..............................................................................................................................................................TGGACGTTGACATGCAATGACTG............................................................................................................................................................23200.1020000000200
.........................................................................................................................................................................ATGCAATGACTGCATCTATCAAGAGGCG............................................................................................................................................28200.1020200000000
.................................TTA-----------------------------------------------------TTGA----TGGACCTA--------------------------------------CTTCCT............................................................................................................................................................................................21200.1020200000000
.............................................................................................................................................................................AATGACTGCATCTATCAAGAGGCG............................................................................................................................................24200.1020200000000
..........................................................................................................................................................................................ATCAAGAGGCGATGC----------------------AATTACT--GC-----..................................................................................................24200.1020110000000
......................................................................................................................................................................GACATGCAATGACTGCATCTATC....................................................................................................................................................23200.1020200000000
......................................................................................................................................................................................................................................................................CCAGCAGAAGG-CTGTTA-CGCGCGGA................................................25200.1020020000000
............................................................................................................................................................TATGGACGTTGACATGCAATGACTGCAT.........................................................................................................................................................28110.0910000000010
............................................................................................................................................................TATGGACGTTGACATGCAATGACT.............................................................................................................................................................24110.0910000000010
............................................................................................................................................................TATGGACGTTGACATGCAATGACTGCATC........................................................................................................................................................29110.0910000000010
.............................................................................................................................................................ATGGACGTTGACATGCAATGACTGCAT.........................................................................................................................................................27140.0710000000100
.........................................................................................................................................................................................TATCAAGAGGCGATGC----------------------AATTACA--A........................................................................................................24200.0510100000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAGGG.............................................................................................................................................26200.0510000100000
................................................................................................................................................................GACGTTGACATGCAATGACTGCATCTA......................................................................................................................................................27200.0510100000000
.....................................................................................................................................................................TGACATGCAATGACTGCATCTATCAAA.................................................................................................................................................27200.0510100000000
....................................................................................................................................................................................................................................................................CACCAGCAGAAGG-CTGTTA-CGC.....................................................22200.0510010000000
.................................TTA-----------------------------------------------------TTGA----TGGACCTA--------------------------------------CTTC..............................................................................................................................................................................................19200.0510100000000
............................................................................................................................................................................CAATGACTGCATCTATCAAGAGGCGT...........................................................................................................................................26200.0510000100000
..........................................................................................................................................................................................ATCAAGAGGCGATGC----------------------AATTACT--.........................................................................................................22200.0510100000000
..........................................................................................................................................................................................................................................................................CAGAAGG-CTGTTA-CGCGCGT.................................................20200.0510000100000
.................................................................................................................................................................................................................................................................TGACACCAGCAGAAGG-CTGTT..........................................................21200.0510000001000
...........................................................................................................................................................................GCAATGACTGCATCTATCAAGAGGCA............................................................................................................................................26200.0510100000000
.......................................................................................................................................................................................TCTATCAAGAGGCGATGC----------------------AATTACA--A........................................................................................................26200.0510100000000
...........................................................................................................................................................................GCAATGACTGCATCTATCAAGAGGCGT...........................................................................................................................................27200.0510100000000
.......................................................................................................................................................................................TCTATCAAGAGGCGATGC----------------------AATTACT--GC-----AC................................................................................................29200.0510000000010
......................................................................................................................................................................................................TGC----------------------AATTACT--GC-----ACCGTCAC..........................................................................................20200.0510100000000
.........................................................................................................................................................................................................................................................................................................CA--AA---ACGCAGCCCTCCTCCCGC.............22200.0510100000000
........................................................................................................................................................................................................................................................TGGCCCGTGTGACACCAGCAGAAGT-...............................................................25200.0510000000100
..........................................................................................................................................................................................ATCAAGAGGCGATGC----------------------AATTACT--GC-----AC................................................................................................26200.0510010000000
.........................................................................................................................................................................................................................................................................................................................CCTCCTCCCGCCCAACCGACCGAC24200.0510010000000
.....................................................................................................................................................................................................................................................................ACCAGCAGAAGG-CTGTTA-CGCGCGGT................................................26200.0510100000000
....................................................................................................................................................................................................................................................CAAGTGGCCCGTGTGACAC..........................................................................19200.0510000010000
........................................................................................................................................................................................................................................................................................................GCA--AA---ACGCAGCCCTCCTCCCGCCCAA.........27200.0510100000000
................................................................................................................................................................................GACTGCATCTATCAAGAGGA.............................................................................................................................................20200.0510100000000
..........................................................................................................................................................................TGCAATGACTGCATCTATCAAGAAAA.............................................................................................................................................26200.0510100000000
.........................................................................................................................................................................ATGCAATGACTGCATCTATCAAGAGG..............................................................................................................................................26200.0510000000010
.........................................................................................................................................................................ATGCAATGACTGCATCTATCAAGAAA..............................................................................................................................................26200.0510100000000
.............................................................................................................................................................................AATGACTGCATCTATCAAGA................................................................................................................................................20200.0510100000000
.........................................................................................................................................................................ATGCAATGACTGCATCTATCAA..................................................................................................................................................22200.0510100000000
.........................................................................................................................................................................................TATCAAGAGGCGATGC----------------------AATTACT--A........................................................................................................24200.0510100000000
.................................................................................................................................................................................................................................................CGTCAAGTGGCCCGTGTGACACCAGC......................................................................26200.0510000001000
droWil2
ATC--A-AAACTCACAGCTAA-----------------------------GGGCACAGACGTGCCGCTGTTTTTATTTAAACTTTATAACTAATACTCAAACTCGGAACCCCGGTCATTACAACGTTATCGGTCCCGAAACGACTCCCGA--CTTTAGCGGACGTTGAC-------------------------------------------------------GATAATATGCGCAATACGTTCAAGTGGCCCCTACGACACCAGGATAAGGCCTGTTT-CGCGCGAGCCC-A-AGCA--GA---TAACTGCCCACCTCCCACCCGACCGACCGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................TACGTTCAAGTGGCCCCTACGACACCA........................................................................27200.5010010000
.....................................................................................................................................................................................................................................TATGCGCAATACGTTCAAGTGGCCC...................................................................................2550.40202000
...............................................................................................................................................................................................................................................................................GGCCTGTTT-CGCGCGAGCC..............................................1930.33100001
...................................................................................................................................................................................................................................................TCAAGTGGCCCCTACGACACCAGGA.....................................................................25200.25505000
......................................................................................................................................................................................................................................ATGCGCAATACGTTCAAGTGGCCC...................................................................................2450.20101000
...........................................................................................................................................................................................................................................CAATACGTTCAAGTGGCCCCTACGA.............................................................................2550.20101000
.....................................................................................................................................................................................................................................TATGCGCAATACGTTCAAGTGGCC....................................................................................2450.20101000
.......................................................................................................................................................................................................................................TGCGCAATACGTTCAAGTGGCCCC..................................................................................2450.20101000
.....................................................................................................................................................................................................................................TATGCGCAATACGTTCAAGTGGCCCA..................................................................................2660.17101000
...................................................................................................................................................................................................................................................TCAAGTGGCCCCTACGACACCAGGATC...................................................................2760.17101000
..................................................................................................................................................................................................................................................TTCAAGTGGCCCCTACGACACCAGGAT....................................................................2760.17101000
..C--A-AAACTCACAGCTAA-----------------------------GGGCA..........................................................................................................................................................................................................................................................................................21200.15302010
..........CTCACAGCTAA-----------------------------GGGCACAGACGTGC.................................................................................................................................................................................................................................................................................25200.15302010
........AACTCACAGCTAA-----------------------------GGGCACAGACG....................................................................................................................................................................................................................................................................................24200.15301020
.............ACAGCTAA-----------------------------GGGCACAGACGTG..................................................................................................................................................................................................................................................................................21200.15301101
.....A-AAACTCACAGCTAA-----------------------------GGGCAC.........................................................................................................................................................................................................................................................................................21200.15303000
.....A-AAACTCACAGCTAA-----------------------------GGGCACAGA......................................................................................................................................................................................................................................................................................24200.15301020
..........CTCACAGCTAA-----------------------------GGGCACAGACGTGCCGC..............................................................................................................................................................................................................................................................................28200.10202000
.....A-AAACTCACAGCTAA-----------------------------GGGCACA........................................................................................................................................................................................................................................................................................22200.10202000
.TC--A-AAACTCACAGCTAA-----------------------------GGGC...........................................................................................................................................................................................................................................................................................21200.10202000
..........CTCACAGCTAA-----------------------------GGGCACAGACGT...................................................................................................................................................................................................................................................................................23200.10202000
...................................................................................................................................................................................................................................................................................................C-A-AGCA--GA---TAACTGCCCACCTCC................23200.10202000
...........TCACAGCTAA-----------------------------GGGCACAGACGTGC.................................................................................................................................................................................................................................................................................24200.10200020
...........TCACAGCTAA-----------------------------GGGCACAGACGTGCCGC..............................................................................................................................................................................................................................................................................27200.10201010
.TC--A-AAACTCACAGCTAA-----------------------------GGGCACAGA......................................................................................................................................................................................................................................................................................26200.10202000
.....................................................................................ATAACTAATACTCAAACTCGGAACC...................................................................................................................................................................................................................................25130.08101000
.........ACTCACAGCTAA-----------------------------GGGCACAGAC.....................................................................................................................................................................................................................................................................................22200.05100010
..............CAGCTAA-----------------------------GGGCACAGACGTGCC................................................................................................................................................................................................................................................................................22200.05101000
.....A-AAACTCACAGCTAA-----------------------------GGGCACAGACG....................................................................................................................................................................................................................................................................................26200.05101000
.....A-AAACTCACAGCTAA-----------------------------GGGCACAG.......................................................................................................................................................................................................................................................................................23200.05101000
................................................................................................................................................................................................................................................................................GCCTGTTT-CGCGCGAGCCC-............................................19200.05101000
ATC--A-AAACTCACAGCTAA-----------------------------GGGC...........................................................................................................................................................................................................................................................................................22200.05101000
ATC--A-AAACTCACAGCTAA-----------------------------GGG............................................................................................................................................................................................................................................................................................21200.05101000
...........................................................CGTGCCGCTGTTTTTATTTAAA................................................................................................................................................................................................................................................................22200.05101000
..................................................................................................................................................................................................................................................................................................CC-A-AGCA--GA---TAACTGCCCACCTCCCT..............26200.05101000
...........TCACAGCTAA-----------------------------GGGCACAGACGTGCCG...............................................................................................................................................................................................................................................................................26200.05100010
..............................................................................................................................................................................................................................................................................................GAGCCC-A-AGCA--GA---TAACTGCCC......................22200.05101000
.....................................................CACAGACGTGCCGCTGTTTTTATTTA..................................................................................................................................................................................................................................................................26200.05101000
................................................................................................................................................................................................................................................................................................GCCC-A-AGCA--GA---TAACTGCCCACCTCCCAC.............29200.05101000
.......AAACTCACAGCTAA-----------------------------GGGCACAGACG....................................................................................................................................................................................................................................................................................25200.05101000
........AACTCACAGCTAA-----------------------------GGGCACAGACGTGC.................................................................................................................................................................................................................................................................................27200.05101000
..C--A-AAACTCACAGCTAA-----------------------------GGGCACAG.......................................................................................................................................................................................................................................................................................24200.05101000
.....................................................................................................................................................................................................................................................................................................................CTGCCCACCTCCCACCCGAC........20200.05101000
........AACTCACAGCTAA-----------------------------GGGCACAG.......................................................................................................................................................................................................................................................................................21200.05101000
..C--A-AAACTCACAGCTAA-----------------------------GGGCACAGACG....................................................................................................................................................................................................................................................................................27200.05100010
...........TCACAGCTAA-----------------------------GGGCACAGACG....................................................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................................................................................................................................ACTGCCCACCTCCCACCCGACCGAC....25200.05101000
............CACAGCTAA-----------------------------GGGCACAGACG....................................................................................................................................................................................................................................................................................20200.05100010
...................AA-----------------------------GGGCACAGACGTGCCGCTG............................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................TAATACTCAAACTCGGAACC...................................................................................................................................................................................................................................20200.05100100
.TC--A-AAACTCACAGCTAA-----------------------------GGGCACAGACG....................................................................................................................................................................................................................................................................................28200.05100010
.......................................................................................................................................................................................................................................................................................................AGCA--GA---TAACTGCCCACCTCCCACCC...........26200.05101000
............................................................................................................................................................................................................................................................................................GCGAGCCC-A-AGCA--GA---TAACTGCC.......................23200.05100010
droVir3
TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCGAATCCCGATGCA--ATGTACTGCATCCCACCTCCCGCCCAACCGACCGAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................CCCACCTCCCGCCCAACCGACC...2260.171000000000000000000000000000000100000000000000000000000000000000
droMoj3
AAA--CCAAAGCTCTGTCTGACTTCCTAATGGACTATCGCAAACAGATCAAGGTAAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCA--C---------ATTTAAGTGGCCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATACCAAGCACGGGCTTGTTAACGCACAGACCC-A-GGCA--AA---GTGCGACCCACCTCCTGCAGAACCGACCGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CAT--CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACGGGGGGAGTATGCCGGGTCAAGCAGCCACCG-----------------------------GAAAGTTTGACCGGCAATAAT-TT--TT-TGCGCGGTTCCCACTGAAT-AC---GTACAGCCCACCTCCCGTCCATTCGACCGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................TGAAT-AC---GTACAGCCCACCTCCCGTC............2658.604313291000
.......................................................................................................................................................................................................................................................................................................TGAAT-AC---GTACAGCCCACCTCCCGTCC...........2754.60239140000
.........................................................................................................................................................................................................................................................................................................AAT-AC---GTACAGCCCACCTCCCGTCC...........2553.40176110000
.........................................................................................................................................................................................................................................................................................................AAT-AC---GTACAGCCCACCTCCCGTC............2453.40173131000
........................................................................................................................................................................................................................................................................................................GAAT-AC---GTACAGCCCACCTCCCGTC............2552.0010640000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCCCACC...................2571.7112480000
...................................................................................................................................................................................................................................................................................T--TT-TGCGCGGTTCCCACTGAA......................................2131.675203000
................................................................................................................................................................................................................................................................................T-TT--TT-TGCGCGGTTCCCACTGAA......................................2321.503210000
................................................................................................................................................................................................................................................................................................TTCCCACTGAAT-AC---GTACAGCCCACC...................2671.4310460000
......................................................................................................................................................................................................................................................................................TT-TGCGCGGTTCCCACTGAA......................................2031.334130000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCCCACCTC.................2761.177250000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCCCACCTCC................2861.177160000
........................................................................................................................................................................................................................................................................................................GAAT-AC---GTACAGCCCACCTCCCGTCC...........2651.005320000
.......................................................................................................................................................................................................................................................................................................TGAAT-AC---GTACAGCCCACCTCCCGT.............2551.005140000
.........................................................................................................................................................................................................................................................................................................AAT-AC---GTACAGCCCACCTCCCGT.............2351.005140000
.......................................................................................................................................................................................................................................................................................T-TGCGCGGTTCCCACTGAAT-AC---GTAC...........................2631.003120000
......................................................................................................................................................................................................................................................................................................CTGAAT-AC---GTACAGCCCACCTCCCGTC............2751.005230000
....................................................................................................................................................................................................................................................................................................CACTGAAT-AC---GTACAGCCCACCTCCCGTC............2950.804220000
...................................................................................................................................................................................................................................................................................T--TT-TGCGCGGTTCCCACTGA.......................................2030.672011000
.........................................................................................................................................................................................................................................................................................TGCGCGGTTCCCACTGAAT-A...................................2030.672110000
.........................................................................................................................................................................................................................................................................................TGCGCGGTTCCCACTGAAT-AC---GTACAGC........................2830.672200000
.........................................................................................................................................................................................................................................................................................TGCGCGGTTCCCACTGAAT-AC---GTACA..........................2630.672200000
..................................................................................................................................................................................................................................................................................TT--TT-TGCGCGGTTCCCACTGAAT-AC---G..............................2630.672110000
......................................................................................................................................................................................................................................................................................................CTGAAT-AC---GTACAGCCCACCTCCCGT.............2650.603210000
.....................................................................................................................................................................................................................................................................................................ACTGAAT-AC---GTACAGCCCACCTCCCGTC............2850.603120000
......................................................................................................................................................................................................................................................................................TT-TGCGCGGTTCCCACTGAAA-....................................2140.502020000
................................................................................................................................................................................................................................................................................T-TT--TT-TGCGCGGTTCCCACTGAAT-AC---...............................2620.501010000
....................................................................................................................................................................................................................................................................................................CACTGAAT-AC---GTACAGCCCACCTCCC...............2660.503030000
.................................................................................................................................................................................................................TCAAGCAGCCACCG-----------------------------GAAAGTTTGAC..........................................................................2520.501010000
.........................................................................................................................................................................................................................................................................................................AAT-AC---GTACAGCCCACCTCCC...............2160.503120000
.................................................................................................................................................................................................................TCAAGCAGCCACCG-----------------------------GAAAGTTTGACC.........................................................................2620.501010000
.....................................................................................................................................................................................................................................................................................................ACTGAAT-AC---GTACAGCCCACC...................2170.433030000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCCCACCT..................2670.433030000
.....................................................................................................................................................................................................................................................................................................ACTGAAT-AC---GTACAGCCCACCTCCCGT.............2750.402110000
....................................................................................................................................................................................................................................................................................................CACTGAAT-AC---GTACAGCCCACCTCCCGT.............2850.402200000
.........................................................................................................................................................................................................................................................................................................AAT-AC---GTACAGCCCACCTCCCGTCCA..........2650.402200000
..................................................................................................................................................................................................................................................................................................CCCACTGAAT-AC---GTACAGCCCACCTCCC...............2860.332020000
...................................................................................................................................................................................................................................................................................................CCACTGAAT-AC---GTACAGCCCACCTCC................2660.332200000
.........................................................................................................................................................................................................................................................................................TGCGCGGTTCCCACTGAA......................................1830.331100000
...................................................................................................................................................................................................................................................................................T--TT-TGCGCGGTTCCCACTGAAT-AC---...............................2430.331000100
................................................................................................................................................................................................................................................................................................TTCCCACTGAAT-AC---GTACAGCCCACCTCC................2960.332110000
...................................................................................................................................................................................................................................................................................................CCACTGAAT-AC---GTACAGCCCACCTC.................2560.332020000
...................................................................................................................................................................................................................................................................................T--TT-TGCGCGGTTCCCACTGAAT-AC---GTA............................2730.331100000
.........................................................................................................................................................................................................................................................................................TGCGCGGTTCCCACTGAAT-AC---G..............................2230.331001000
....................................................................................................................................................................................................................................................................................................CACTGAAT-AC---GTACAGCCCACCTCC................2560.332020000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCCCACCTCCC...............2960.332110000
.........................................................................................................................................................................................................................................................................................TGCGCGGTTCCCACTGAAT-AC---GTACAGCC.......................2930.331010000
......................................................................................................................................................................................................................................................................................................CTGAAT-AC---GTACAGCCCACCTCC................2360.332110000
.......................................................................................................................................................................................................................................................................................T-TGCGCGGTTCCCACTGAAT-AC---GTACA..........................2730.331100000
......................................................................................................................................................................................................................................................................................TT-TGCGCGGTTCCCACTGAAT-AC---G..............................2430.331100000
.......................................................................................................................................................................................................................................................................................T-TGCGCGGTTCCCACTGAAT-AC---GTACAG.........................2830.331100000
.......................................................................................................................................................................................................................................................................................T-TGCGCGGTTCCCACTGAAT-A...................................2130.331100000
...................................................................................................................................................................................................................................................................................T--TT-TGCGCGGTTCCCACTGAAT-....................................2230.331100000
..................................................................................................................................................................................................................................................................................TT--TT-TGCGCGGTTCCCACTGAA......................................2230.331001000
.......................................................................................................................................................................................................................................................................................T-TGCGCGGTTCCCACTGAA......................................1930.331010000
..................................................................................................................................................................................................................................................................................TT--TT-TGCGCGGTTCCCACTGAAT-AC---...............................2530.331010000
..................................................................................................................................................................................................................................................................................................CCCACTGAAT-AC---GTACAGCCCACCTCC................2760.332020000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCCC......................2270.292020000
....................................................................................................................................................................................................................................................................................................CACTGAAT-AC---GTACAGCCCACCTCCCG..............2750.201100000
..........................................................................................................................................................................................................................................................................................GCGCGGTTCCCACTGAAT-AC---GTACAGC........................2750.201100000
.........................................................................................................................................................................................................................................................................................TGCGCGGTTCCCACTGAAA-....................................1950.201100000
......................................................................................................................................................................................................................................................................................................CTGAAT-AC---GTACAGCCCACCTCCCG..............2550.201010000
.........................................................................................................................................................................................................................................................................................................AAT-AC---GTACAGCCCACCTCCCG..............2250.201000001
...........................................................................................................................................................................................................................................................................................CGCGGTTCCCACTGAAT-AC---GTACAGCC.......................2750.201010000
..............................................................................................................................................................................................................................................................................................GGTTCCCACTGAAT-AC---GTACAGCCCAC....................2760.171100000
......................................................................................................................................................................................................................................................................................TT-TGCGCGGTTCCCACTGAG......................................2060.171010000
.......................................................................................................................................................................................................................................................................................................TGAAT-AC---GTACAGCCCACCTCC................2260.171010000
.........................................................................................................................................................................................................................................................................................................AAT-AC---GTACAGCCCACCTCC................2060.171010000
..................................................................................................................................................................................................................................................................................................CCCACTGAAT-AC---GTACAGCCCACCTC.................2660.171010000
.....................................................................................................................................................................................................................................................................................................ACTGAAT-AC---GTACAGCCCACCTC.................2360.171001000
......................................................................................................................................................................................................................................................................................................CTGAAT-AC---GTACAGCCCACCTCCC...............2460.171010000
.......................................................................................................................................................................................................................................................................................................TGAAT-AC---GTACAGCCCACCTCCC...............2360.171010000
...................................................................................................................................................................................................................................................................................................CCACTGAAT-AC---GTACAGCCCACCTCCC...............2760.171010000
......................................................................................................................................................................................................................................................................................................CTGAAT-AC---GTACAGCCCACCTCCCC..............2560.171010000
..............................................................................................................................................................................................................................................................................................GGTTCCCACTGAAT-AC---GTACAGCCC......................2560.171010000
................................................................................................................................................................................................................................................................................................TTCCCACTGAAT-AC---GTACAGCCC......................2370.141100000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCC.......................2170.141010000
....................................................................................................................................................................................................................................................................................................CACTGAAT-AC---GTACAGCCCACC...................2270.141010000
.............................................................................................................................................................................................................................................................................................CGGTTCCCACTGAAT-AC---GTACAGC........................2470.141100000
................................................................................................................................................................................................................................................................................................TTCCCACTGAAT-AC---GTACAGCCCAC....................2570.141010000
..................................................................................................................................................................................................................................................................................................CCCACTGAAT-AC---GTACAGCCCACC...................2470.141100000
...................................................................................................................................................................................................................................................................................................CCACTGAAT-AC---GTACAGCCCACCT..................2470.141100000
......................................................................................................................................................................................................................................................................................................CTGAAT-AC---GTACAGCCCACCT..................2170.141010000
.................................................................................................................................................................................................................................................................................................TCCCACTGAAT-AC---GTACAGCCCAC....................2470.141010000
................................................................................................................................................................................................................................................................................................TTCCCACTGAAT-AC---GTACAGCCCACCT..................2770.141100000
..................................................................................................................................................................................................................................................................................................CCCACTGAAT-AC---GTACAGCCC......................2170.141010000
.......................................................................................................................................................................................................................................................................................................TGAAT-AC---GTACAGCCCACCTCCCGTCT...........27110.091010000
................................................................................................................................................................................................................................................................................T-TT--TT-TGCGCGGTTCCCACTG........................................21200.051001000
droBip1
TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATACTGGTATTAAA-TTTTTT-CGCGCGGGTCCCACAGCA--TA-C-ATACAGCCAACCTCTCGCCCAACCGACCGAGSizeHit CountTotal NormTotal
No Reads
droKik1
CAG--AAGAGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTTATCGCGCGGGCTC-C-CGC-------------TTCCACCTCCCGCCCAACCGACCGAGSizeHit CountTotal NormTotal
No Reads
droFic1
AAA--CGAAAGCCGTCTCCGAGTTTCTCATGGATTACCGCACGCAGATCAAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAA--CCAAGGCAGTATCCGAATTTCTGATGGACTACCGAACGCAGATCAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAA--CCAAGGCCGTCTCCGAATTTCTCATGGACTACAGAACGCAGATTAAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGA--CCAAGGCTGTCTCTGAGTTCCTCATGGACTACCGAACGCAGATTAAGGTGGGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGSizeHit CountTotal NormTotal
No Reads
droTak1
AGC--CGTAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCG-CGCGCGAATCCCA-GGCG--AA---CA--AGCCCACCTCCCGCCCAACCGACCGAGSizeHit CountTotal NormTotal
No Reads
droEug1
CCT--TCAAGCGCAATTCTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----ACCACCAGACTGCCGGAATTTCATCATCAGCGAT-TTTTTT-TTCGCGACTTCCGTTGCTTAAC---GTGCAACCCACCTCCCGCCCAACCGACCAAGSizeHit CountTotal NormTotal
No Reads
dm3
AAA--CCAAGGCAGTATCTGAGTTCCTTATGGACTATAGGACGCAGATAAAGGTATGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................TTATGGACTATAGGACGCAGATAAAG.............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTCCTTATGGACTATAGGC........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAA--CCAAGGCGGTCTCTGAGTTCCTCATGGATTATAGGACGCAGATAAAGGTATGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AAA--CCAAGGCGGTCTCTGAGTTCCTCATGGATTATAGGACCCAGATAAAGGTATGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAA--CCAAGGCCGTCTCTGAATTCCTCATGGATTACAGGACGCAGATTAAGGTGTGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAA--CCAAGGCAGTCTCTGAATTCCTCATGGATTATAGGACGCAGATAAAGGTGTGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 06/08/2015 at 04:13 PM