ID:

dpe_1424

 Coordinate:

scaffold_30:281890-282040 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.5 -2.2 -2.1

Flybase annnotation

exon [dper_GLEANR_20293:2]; CDS [Dper\GL18261-cds]; intron [Dper\GL18261-in]

No Repeatable elements found

mature
  1. scaffold_25:906679-906703 -
  2. scaffold_144:42997-43021 -
  3. scaffold_165:27866-27890 -
  4. scaffold_174:28711-28735 -
  5. scaffold_174:38553-38577 -
  6. scaffold_171:44924-44948 -
  7. scaffold_175:24776-24800 -
  8. scaffold_86:4475-4499 -
  9. scaffold_1685:548-572 -
  10. scaffold_54:367670-367694 -
  11. dpe_1424  scaffold_30:281935-281959 -
  12. scaffold_1348:6869-6893 -
  13. scaffold_102:36060-36084 -
  14. scaffold_2788:1038-1062 -
  15. scaffold_310:15915-15939 -
  16. scaffold_4148:463-487 -
  17. scaffold_121:80060-80084 -
  18. scaffold_5235:31-55 -
  19. scaffold_5785:310-334 -
  20. scaffold_6496:781-805 -
star
  1. scaffold_10:1378903-1378928 -
  2. scaffold_55:156700-156725 -
  3. scaffold_144:43037-43062 -
  4. scaffold_1474:1149-1174 -
  5. scaffold_84:212002-212027 -
  6. scaffold_76:147884-147909 -
  7. scaffold_64:325718-325743 -
  8. scaffold_86:4515-4540 -
  9. scaffold_90:159279-159304 -
  10. dpe_1424  scaffold_30:281975-282000 -
  11. scaffold_1931:4853-4878 -
  12. scaffold_1348:6909-6934 -
  13. scaffold_4148:503-528 -
  14. scaffold_4643:69-94 -
  15. scaffold_5075:648-673 -
  16. scaffold_1508:2950-2975 -
  17. scaffold_5785:350-375 -
  18. scaffold_8580:309-334 -
  19. scaffold_6665:976-1001 -
  20. scaffold_6133:757-782 -
  21. scaffold_41:672034-672059 +
  22. scaffold_55:298788-298813 +
  23. scaffold_55:359485-359510 +
  24. scaffold_1052:7892-7917 +
  25. scaffold_1058:7571-7596 +
  26. scaffold_81:186281-186306 +
  27. scaffold_43:154394-154419 +
  28. scaffold_43:503017-503042 +
  29. scaffold_54:102483-102508 +
  30. scaffold_136:30545-30570 +
  31. scaffold_107:102390-102415 +
  32. scaffold_107:160566-160591 +
  33. scaffold_101:65609-65634 +
  34. scaffold_248:8978-9003 +
  35. scaffold_918:7663-7688 +
  36. scaffold_1054:3547-3572 +
  37. scaffold_3642:2179-2204 +
  38. scaffold_3676:184-209 +
  39. scaffold_121:96501-96526 +
  40. scaffold_6486:1522-1547 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTATTAGACTAACATTCGAGGAAAATTAGTACTAAACTTACTAAGAAACTAAGCATGCAATCAAAATACATATACCACTACAGTTACTAATTAATAGAAAGGTGTGTAAGGATTAATAATTTAATAAGAGGAAGAGAATTAGTGGTGGATATAATATGGTAGATCGATCTTACAATCGATCGGTTCCCTCTTCCCCCTCAGCTCTACATCTCCCTGCAGGCGTATGGCCAAGTGGTTTCGTATACGGTTAA
******************************************************************************************............(((((....((((.((((((.............)))))).))))..)))))...*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body
.............ATTCGAGGAAAATTAGTACTAAACT..................................................................................................................................................................................................................... 25 0 19 1.74 33 17 16 0 0
..............TTCGAGGAAAATTAGTACTAAACT..................................................................................................................................................................................................................... 24 0 19 1.32 25 20 5 0 0
.............................TACTAAACTTACTAAGAAACTAAGCA.................................................................................................................................................................................................... 26 0 14 1.21 17 17 0 0 0
..................................................................................................................................................GGATATAATATGGTAGGTC...................................................................................... 19 1 1 1.00 1 1 0 0 0
............................................GAAACTAAGCATGCAATCAAAA......................................................................................................................................................................................... 22 0 20 0.70 14 14 0 0 0
..............TTCGAGGAAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 28 0 16 0.63 10 6 4 0 0
.........................................TAAGAAACTAAGCATGCAATCAAAAAA....................................................................................................................................................................................... 27 1 20 0.60 12 12 0 0 0
..........................................AAGAAACTGAGCATGCAATCAAAATGTAT.................................................................................................................................................................................... 29 3 2 0.50 1 1 0 0 0
..............TTCGAGGAAAATTAGTACTAAACTTAC.................................................................................................................................................................................................................. 27 0 18 0.50 9 9 0 0 0
..........................................AAGAAACTAAGCATGCAATCAAAAC........................................................................................................................................................................................ 25 1 20 0.45 9 9 0 0 0
...................................................................................................................................AAGAGAATTAGTGGTGGATATAATA............................................................................................... 25 0 20 0.40 8 8 0 0 0
...TTAGACTAACATTCGAGGAAAATTA............................................................................................................................................................................................................................... 25 0 20 0.40 8 8 0 0 0
..........................................................................................TTAATAGAAAGGTGTGTAAGGATTAA....................................................................................................................................... 26 0 20 0.35 7 7 0 0 0
.............ATTCGAGGAAAATTAGTACTAAAC...................................................................................................................................................................................................................... 24 0 19 0.32 6 6 0 0 0
........................................CTAAGAAACTAAGCATGCAATCAAA.......................................................................................................................................................................................... 25 0 20 0.30 6 6 0 0 0
.........................................GAAGAAACTAAGCATGCAATCAAAATA....................................................................................................................................................................................... 27 1 20 0.25 5 5 0 0 0
.................................................TAAGCATGCAATCAAAATA....................................................................................................................................................................................... 19 0 20 0.25 5 5 0 0 0
......................................TACTAAGAAACTAAGCATGCAATCAAA.......................................................................................................................................................................................... 27 0 20 0.25 5 5 0 0 0
.................................................................ATACATTTAGCACTACAGTTGC.................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0
..................................................................................................AAGGTGTGTAAGGATTAATAATTTAATA............................................................................................................................. 28 0 20 0.25 5 5 0 0 0
..............TTCGAGGAAAATTAGTACTAAACTTACA................................................................................................................................................................................................................. 28 1 18 0.22 4 4 0 0 0
.............ATTCGAGGAAAATTAGTACTAAACTTAC.................................................................................................................................................................................................................. 28 0 18 0.22 4 4 0 0 0
..............TTCGAGGAAAATTAGTACTAAACTT.................................................................................................................................................................................................................... 25 0 19 0.21 4 4 0 0 0
..........................................AGGAAACTAAGCATGCAATCAAAA......................................................................................................................................................................................... 24 1 20 0.20 4 4 0 0 0
............................................................................................................................TAAGAGGAAGAGAATTAGTGGTG........................................................................................................ 23 0 20 0.20 4 0 0 4 0
..........................................AAGAAACTGAGCATGCAATCAAAAT........................................................................................................................................................................................ 25 1 20 0.20 4 4 0 0 0
...............TCGAGGAAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 27 0 18 0.17 3 3 0 0 0
..............TTCGAGGAAAATTAGTACTAAACTTA................................................................................................................................................................................................................... 26 0 19 0.16 3 3 0 0 0
..........................................AAGAAACTAAGCGTGCAATCAAAA......................................................................................................................................................................................... 24 1 20 0.15 3 3 0 0 0
..........................TAGTACTAAACTTACTAAGAAACTAAGCA.................................................................................................................................................................................................... 29 0 14 0.14 2 2 0 0 0
.................................................................ATACATTTAGCACTACAGTTG..................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0
...............TCGAGGAAAATTAGTACTAAACTTACA................................................................................................................................................................................................................. 27 1 20 0.10 2 2 0 0 0
.......................................................................................TAATTAATAGAAAGGTGTGTAAGGAT.......................................................................................................................................... 26 0 20 0.10 2 2 0 0 0
............................................................................................................................TAAGAGGAAGAGAATTAGTGGTGG....................................................................................................... 24 0 20 0.10 2 0 0 2 0
..........................................AAGAAACTAAGCGTGCAATCAAAATA....................................................................................................................................................................................... 26 1 20 0.10 2 2 0 0 0
...............TCGAGGAAAATTAGTACTAAACTTA................................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0
..................................................................................................AAGGTGTGTAAGGATTAATAATTTA................................................................................................................................ 25 0 20 0.10 2 0 0 0 2
..............................ACTAAACTTACTAAGAAACTAAGCA.................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0
..............................................................................................TAGAAAGGTGTGTAAGGATTAATAATT.................................................................................................................................. 27 0 20 0.10 2 0 0 0 2
................CGAGGAAAATTAGTACTAAACTT.................................................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0
..........................TAGTACTAAACTTACTAAGAAACTAAGC..................................................................................................................................................................................................... 28 0 14 0.07 1 1 0 0 0
.............................TACTAAACTTACTAAGAAACTAAGC..................................................................................................................................................................................................... 25 0 14 0.07 1 1 0 0 0
.............................TACTAAACATACTAAGAAACTAAGCA.................................................................................................................................................................................................... 26 1 15 0.07 1 1 0 0 0
.............................TACTAAACGTACTAAGAAACTAAGCA.................................................................................................................................................................................................... 26 1 15 0.07 1 1 0 0 0
.............ATTCGAGGAAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 29 0 16 0.06 1 1 0 0 0
..............TTCGAGGAAAATTAGTACTAAACTTACTA................................................................................................................................................................................................................ 29 0 16 0.06 1 1 0 0 0
..........................TAGTACTAAACTTACTAAGAAACTA........................................................................................................................................................................................................ 25 0 16 0.06 1 1 0 0 0
..............TTCGAGGATAATTAGTACTAAACTTA................................................................................................................................................................................................................... 26 1 19 0.05 1 1 0 0 0
..............TTCGAGGAGAATTAGTACTAAACTT.................................................................................................................................................................................................................... 25 1 19 0.05 1 1 0 0 0
.................GAGGAAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 25 0 19 0.05 1 1 0 0 0
.............ATTCGAGGAAAATTAGTACTAAACTTA................................................................................................................................................................................................................... 27 0 19 0.05 1 1 0 0 0
.....................AAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 21 0 19 0.05 1 1 0 0 0
..............TTCGAGGAAAATTAGTACTAAACGTAC.................................................................................................................................................................................................................. 27 1 19 0.05 1 1 0 0 0
...................GGAAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 23 0 19 0.05 1 1 0 0 0
..................AGGAAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 24 0 19 0.05 1 0 1 0 0
..............TTCGAGGAGAATTAGTACTAAAC...................................................................................................................................................................................................................... 23 1 19 0.05 1 1 0 0 0
..............TTCGAGGAAAATTAGTACTAAAC...................................................................................................................................................................................................................... 23 0 19 0.05 1 1 0 0 0
..................GGTAAAATTAGTACTAAACTTACT................................................................................................................................................................................................................. 24 2 20 0.05 1 1 0 0 0
.............................................................................................ATAGAAAGGTGTGTAAGGATTAATA..................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
..........................................AAGAAACTCAGCATGCAATCATAA......................................................................................................................................................................................... 24 2 20 0.05 1 1 0 0 0
..............TTCGAGGAGAATTAGTACTAATCTT.................................................................................................................................................................................................................... 25 2 20 0.05 1 1 0 0 0
..............TTCGAGCAAAATTAGTACTAAACT..................................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
.............ATTCGAGGAAAATTAGTAC........................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
..........................................AAGAAACTAAGCATGCAATCAAAAGCCA..................................................................................................................................................................................... 28 2 20 0.05 1 1 0 0 0
..............................................................................................TAGAAAGGGGTGTAAGGATTAA....................................................................................................................................... 22 1 20 0.05 1 1 0 0 0
........................................................................................................................................AATTAGTGGTGGATATAATATGGT........................................................................................... 24 0 20 0.05 1 1 0 0 0
................CGAGGAAAATTAGTACTAAACTTAAATA............................................................................................................................................................................................................... 28 3 20 0.05 1 1 0 0 0
..........................................AAGAAACTAAGCATGCAATCAAACTACA..................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0
...........TAATTCGAGGAAAATTAGTACTAAAC...................................................................................................................................................................................................................... 26 2 20 0.05 1 1 0 0 0
.......................................................................................................................TTTAATAAGAGGAAGAGAATTAGTG........................................................................................................... 25 0 20 0.05 1 1 0 0 0
..........................................AAGAAACTAAGCATGCAATCAAGA......................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
..............................................................................................................................AGAGGAAGAGAATTAGTGGTGGAT..................................................................................................... 24 0 20 0.05 1 0 1 0 0
......................................TACTAAGAAACTAAGCATGCAATAAAAA......................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0
.............ATTCGAGGAAAATTAGTACTAAA....................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
...........................................................................................................................ATAAGAGGAAGAGAATTAGTGG.......................................................................................................... 22 0 20 0.05 1 1 0 0 0
.........................................................................................................................TAATAAGAGGAAGAGAATTAGT............................................................................................................ 22 0 20 0.05 1 1 0 0 0
..................................................................................................AAGGTGTGTAAGGATTAATAATTTAAT.............................................................................................................................. 27 0 20 0.05 1 1 0 0 0
...TTAGACTAAAATTCGAGGAAAATTAGT............................................................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0
.....................................TTACTAAGAAACTAAGCATGC................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0
..........................................AAGGAACTGAGCATGCAATCAAAA......................................................................................................................................................................................... 24 2 20 0.05 1 1 0 0 0
...................................................................................................AAGTGTGTAAGGATTAATAATT.................................................................................................................................. 22 1 20 0.05 1 1 0 0 0
...................................................................................................................ATAATTTAATAAGAGGAAGAG................................................................................................................... 21 0 20 0.05 1 0 0 0 1
............................................................................................GATAGAAAGGTGTGTAAGGATTAATAATT.................................................................................................................................. 29 1 20 0.05 1 1 0 0 0
...................................................................................................................................AAGAGAATTAGTGGTGGATATA.................................................................................................. 22 0 20 0.05 1 1 0 0 0
..........................................AAGAAACTGAGCATGCAATCAAAAG........................................................................................................................................................................................ 25 2 20 0.05 1 1 0 0 0
...............TCGAGGAAAATTAGTACTAAACTTAC.................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
................CGAGGAAAATTAGTACTAAACT..................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
........................................................................TACCACTACAGTTACTAATTAA............................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0
........................................................................................................................TTAATAAGAGGAAGAGAA................................................................................................................. 18 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GATAATCTGATTGTAAGCTCCTTTTAATCATGATTTGAATGATTCTTTGATTCGTACGTTAGTTTTATGTATATGGTGATGTCAATGATTAATTATCTTTCCACACATTCCTAATTATTAAATTATTCTCCTTCTCTTAATCACCACCTATATTATACCATCTAGCTAGAATGTTAGCTAGCCAAGGGAGAAGGGGGAGTCGAGATGTAGAGGGACGTCCGCATACCGGTTCACCAAAGCATATGCCAATT
***********************************************************************************************............(((((....((((.((((((.............)))))).))))..)))))...****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V057
head
 V111
male body
................................................................................GTCAATGATTAATTATCTTTCCACACAT............................................................................................................................................... 28 0 20 5.10 102 47 55 0 0
...................................................................................AATGATTAATTATCTTTCCACACAT............................................................................................................................................... 25 0 20 0.75 15 15 0 0 0
..................................................................................CAATGATTAATTATCTTTCCACACAT............................................................................................................................................... 26 0 20 0.55 11 11 0 0 0
.................................................................................TCAATGATTAATTATCTTTCCAC................................................................................................................................................... 23 0 20 0.30 6 6 0 0 0
.....................................................................................TGATTAATTATCTTTCCACACAT............................................................................................................................................... 23 0 20 0.25 5 5 0 0 0
.............................................................................GATGTCAATGATTAATTATCTTTC...................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0
.............................ATGATTTGAATGATTCTTTGATT....................................................................................................................................................................................................... 23 0 15 0.13 2 2 0 0 0
......CTGATTGTAAGCTCCTTTTAAT............................................................................................................................................................................................................................... 22 0 20 0.10 2 2 0 0 0
................................................................................GTCAATGATTAATTATCTTTCCAC................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0
.............................................................................GATGTCAATGATTAATTATCTTT....................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0
..............................................................................ATGTCAATGATTAATTATCTTTC...................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0
............................CATGATTTGAATGATTCTTTGATT....................................................................................................................................................................................................... 24 0 15 0.07 1 1 0 0 0
............................CATGATTTGAATGAGTCTTTGAT........................................................................................................................................................................................................ 23 1 17 0.06 1 1 0 0 0
.........................................................................TGGTGATGTCAATGATTAATTA............................................................................................................................................................ 22 0 20 0.05 1 0 0 1 0
.................TTCCTTTTAATCATGATTTGAATGAT................................................................................................................................................................................................................ 26 1 20 0.05 1 1 0 0 0
.......TGATTGTAAGCTCCTTTTAAT............................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
................................................................................GTCAATGATTAATTATCTTTCCACACATT.............................................................................................................................................. 29 0 20 0.05 1 1 0 0 0
..................................................................................CAATGATTAATTATCTTTCCACACA................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
..........................................................................TGTGATGTCAATGATTAATTATC.......................................................................................................................................................... 23 1 20 0.05 1 0 0 0 1
............................................CTTTGATTCGTACGTTAGTTT.......................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0
................................................................................GTCAATGATTAATTATCTTTCCACAC................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
........................................................................ATGGTGATGTCAATGATTAATT............................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0
.....TCTGATTGTAAGCTCCTTTT.................................................................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0
............................................................................TGATGTCAATGATTAATTATCTTT....................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
...............................................................................TGTCAATGATTAATTATCTTTCCAC................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
GATAATCTGATTGTAAGCTCCTTT................................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
............................................................................AGATGTCAATGATTTATTATCTT........................................................................................................................................................ 23 2 20 0.05 1 1 0 0 0
...............AGCTCCTTTTAATCATGATTTG...................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
..........................................................................GGTGATGTCAATGATTAATTA............................................................................................................................................................ 21 0 20 0.05 1 0 0 0 1
..............AAGCTCCTTTTAGTCATGATT........................................................................................................................................................................................................................ 21 1 20 0.05 1 1 0 0 0
.................................................................................TCAATGATTAATTATCTTTCCACACA................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0
.............................................TTTGATTCGTACGTTAGTTTTAT....................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
................................................................................GTCAATGATTAATTATCTTTCCGCACAT............................................................................................................................................... 28 1 20 0.05 1 1 0 0 0
............................................CTTTGATTCGTACGTTAGTTTTATGT..................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
............................AATGATTTGAATGATTCTTTGAT........................................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_30:281840-282090 - dpe_1424 CTATTAG-ACTA-----ACAT--TCGAGGA----AAATTAGTACT--AAACTTACTAAGAAACTA-----------------AGCATGCAATCAAAA----TACATATACCACTACAGTTACTAATTAATAGAAAGGTGTGTAAGG-----ATT-AATAA-TTTAATAAGAGGAAG---------AGAATTAGTGGTGGATATAATATG--------------GTAGATCGA-TCTTACAATCGATCGGTTCCCTCTTCCCCCTCAGCTCTACATCTCCCTGCAGGCGTATGGCCAAGTGGTTTCGTATACGGTTAA
dp5 4_group4:4548571-4548746 + CTATTAG-ACTA-----ACAT--TCGAGGA----AAATTAGTACT--AAACTTACTAAGAAACTA-----------------AGCATGCAATCAAAA----TACAAATACCACTACAGTTACTAATTAATAGAAAGGTGTGTAAGG-----TTT-AATAA-TTTAATAAGAGGAAG---------AGAATTAGTGGTGGATATAATATG--------------GTAGAGGGA-A-TTATAATC--------------------------------------------------------------------------
droWil2 scf2_1100000004403:6106-6274 - TGATTAACTACAGCTAATT----ACGAGCTAAATGTGCTAAAATAGAAGTTTTCACAAGGGAAAG-----------------AGAG-GCTTCTGATCTGATTACGGG------------------------------------AAC-----ATT-CATAGCTTTACTAACTGTAGCAGAAGTATGAGGATTAAAAGTTAATT--------TATGGTCCATAAGAACACGTAA-A-TTATTGAT--------------------------------------------------------------------------
droVir3 scaffold_12963:12252849-12252955 - GAAAAT--AA-----TAATA-AA--AAAAA----AA-TACAT---------------------------------ACATACTA--------------CAAGTATGTGAAAATATATAATTACTAATAAACATAAGACTATCTGCTT-----ACTAAATAG-TTTGAAAAA----------------------------------------------------------------------------------------------------------------------------------------------GAAGA
droMoj3 scaffold_6473:11866910-11866972 + TTTGCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGCTGTATATATCGCTGCAGGCCTACGGCCAGGTGTTGTCGTATCCGGTCAA
droGri2 scaffold_15081:2658938-2658990 + CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTACATTTCGTTGCAGGCCTATGGCCAGGTGGTATCCTATCCGGTCAA
droAna3 scaffold_12911:616508-616666 - TATAATAGTATA-----GTAT--ATAAGT---------TTAAATAGAAGGATTATAAAGAAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------CTTGTAGGTAATTTAAA-----ATG-GAGGT-TTTCAAATTTGACAGGGAAGAAAGAGAAA------------TAATATTATACAGACCATT--GTAGTTCGA-ACATAAAATC--------------------------------------------------------------------------
droBip1 scf7180000396733:403608-403673 + CCCAACT-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACCAGCTCTATATATCCCTACAAGCCTACGGCCAAGTGGTATCCTATCCCGTGAA
droKik1 scf7180000302449:37135-37305 - AACGAGG-AA-----A--CGT--TACGAGA----GTACTCAAATA--AAATTTACTAGAAAAAAA-----------------TATAATTTATTAATA----TATATATATAAGTAAAGTAAAA-----GTAAAAACGCATGCAAAATAAATATA-AAAAA-ATTAAT----ATAAT---------GTAACTAAATATTAATATAATGTA--------------ACTAAATACTA-CGATAAAT--------------------------------------------------------------------------
droFic1 scf7180000454077:1206220-1206276 + CTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTATATATCCCTGCAGGCCTATGGCCAGATCATATCCTATCCAGTCAA
droEle1 scf7180000491013:1130660-1130718 - CTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTATATATATCGCTGCAGGCCTACGGCCAGGTGATTTCCTATCCGGTAAA
droRho1 scf7180000779333:146149-146205 - CTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATATATATCCCTGCAGGCCTATGGTCAAGTGATTTCGTATCCGGTGAA
droBia1 scf7180000302421:1227790-1227843 + TCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTACATATCCCTGCAGGCCTATGGCCAGGTGATTTCCTACCCGGTCAA
droTak1 scf7180000412307:1139-1258 - AAAATAT-AG-----T-------TCGAGGA----AA-AA-------------------------------------------A--------------GTAGGA-----------------TCTAATTCTGTGCTCGGAAATTTAAT-----ATT-AATCG-TTTTAGGAGAAGCAG---------AGAGTCAGAATTTGATATAATAGG--------------ATAAAGTACTA-TTATAGTC--------------------------------------------------------------------------
droEug1 scf7180000409271:33429-33485 - CTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTATATATCCCTGCAAGCCTATGGCCAAGTGATTTCCTATCCAGTCAA
dm3 chr2L:22172586-22172723 - CAGGAA------------------CGAGGA----AA-TGAATAAA--TTGTAAAATAA----CTATATTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAATTATGTAATAGAAAAGTTAAA-----ATC-GATTG-CTTTAAGAGCGGCAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAA
droSim2 2r:447082-447228 - AAAATAG-AA-----TAGGA-AC--GAGGA----AA-TTAATATA--ATGCGGAAAAA----CTATGTTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAATTATTTAATAGAAAAGATAAT-----ATC-GATTG-CTTTAATAGCGGCAG---------AGACTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAA
droSec2 scaffold_93:61464-61608 - AAAATAG-AA-----TAGGA-AC--GAGGA----AA-TTAATATA--ATGTTAAATAATAAA------TAAATATTAGTGTTA--------------GTAGGA-----------------TCTAATTATGTAATAGAAAAGATAAT-----ATC-GATTA-CTTTAATAGCGGCAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAA
droYak3 v2_chrUn_2527:19204-19343 - AATACAG-TA-----AAGG----ACGAGGA----AA-TATATGT-------------------------------ATATAGTA--------------GTAAGA-----------------TCTAAGAATTCGTTAAGTATGTTAGT-----ATT-GATCG-CTTTAAAAAAGGCAG---------AGAGTCCGAATTAGAGATAATAGGATACAATCT---------ATTATAG-TATTGGTC--------------------------------------------------------------------------
droEre2 scaffold_4690:7327751-7327803 - CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTACATTTCCCTACAGGCCTATGGGCAGGTCATATCCTATCCGGTCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTATTAG-ACTA-----ACAT--TCGAGGA----AAATTAGTACT--AAACTTACTAAGAAACTA-----------------AGCATGCAATCAAAA----TACATATACCACTACAGTTACTAATTAATAGAAAGGTGTGTAAGG-----ATT-AATAA-TTTAATAAGAGGAAG---------AGAATTAGTGGTGGATATAATATG--------------GTAGATCGA-TCTTACAATCGATCGGTTCCCTCTTCCCCCTCAGCTCTACATCTCCCTGCAGGCGTATGGCCAAGTGGTTTCGTATACGGTTAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................AT--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................25191.743316170000
....................T--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................24191.32255200000
.........................................TACT--AAACTTACTAAGAAACTA-----------------AGCA.......................................................................................................................................................................................................................................26141.21170170000
..........................................................GAAACTA-----------------AGCATGCAATCAAAA----........................................................................................................................................................................................................................22200.70140140000
....................T--TCGAGGA----AAATTAGTACT--AAACTTACT.....................................................................................................................................................................................................................................................................28160.6310460000
....................T--TCGAGGA----AAATTAGTACT--AAACTTAC......................................................................................................................................................................................................................................................................27180.509090000
........................................................AAGAAACTA-----------------AGCATGCAATCAAAA----C.......................................................................................................................................................................................................................25200.459090000
.............................................................................................................................................................................AAG---------AGAATTAGTGGTGGATATAATA..............................................................................................................25200.408080000
...TTAG-ACTA-----ACAT--TCGAGGA----AAATTA.....................................................................................................................................................................................................................................................................................25200.408080000
.............................................................................................................................TTAATAGAAAGGTGTGTAAGG-----ATT-AA................................................................................................................................................................26200.357070000
...................AT--TCGAGGA----AAATTAGTACT--AAAC..........................................................................................................................................................................................................................................................................24190.326060000
......................................................CTAAGAAACTA-----------------AGCATGCAATCAAA.............................................................................................................................................................................................................................25200.306060000
...............................................................TA-----------------AGCATGCAATCAAAA----TA......................................................................................................................................................................................................................19200.255050000
....................................................TACTAAGAAACTA-----------------AGCATGCAATCAAA.............................................................................................................................................................................................................................27200.255050000
.....................................................................................................................................AAGGTGTGTAAGG-----ATT-AATAA-TTTAATA.....................................................................................................................................................28200.255050000
....................T--TCGAGGA----AAATTAGTACT--AAACTTACA.....................................................................................................................................................................................................................................................................28180.224040000
...................AT--TCGAGGA----AAATTAGTACT--AAACTTAC......................................................................................................................................................................................................................................................................28180.224040000
....................T--TCGAGGA----AAATTAGTACT--AAACTT........................................................................................................................................................................................................................................................................25190.214040000
......................................................................................................................................................................TAAGAGGAAG---------AGAATTAGTGGTG.......................................................................................................................23200.204004000
.......................TCGAGGA----AAATTAGTACT--AAACTTACT.....................................................................................................................................................................................................................................................................27180.173030000
....................T--TCGAGGA----AAATTAGTACT--AAACTTA.......................................................................................................................................................................................................................................................................26190.163030000
......................................TAGTACT--AAACTTACTAAGAAACTA-----------------AGCA.......................................................................................................................................................................................................................................29140.142020000
.......................TCGAGGA----AAATTAGTACT--AAACTTACA.....................................................................................................................................................................................................................................................................27200.102020000
..........................................................................................................................TAATTAATAGAAAGGTGTGTAAGG-----AT....................................................................................................................................................................26200.102020000
......................................................................................................................................................................TAAGAGGAAG---------AGAATTAGTGGTGG......................................................................................................................24200.102002000
.......................TCGAGGA----AAATTAGTACT--AAACTTA.......................................................................................................................................................................................................................................................................25200.102020000
.....................................................................................................................................AAGGTGTGTAAGG-----ATT-AATAA-TTTA........................................................................................................................................................25200.102000002
..........................................ACT--AAACTTACTAAGAAACTA-----------------AGCA.......................................................................................................................................................................................................................................25200.102020000
.................................................................................................................................TAGAAAGGTGTGTAAGG-----ATT-AATAA-TT..........................................................................................................................................................27200.102000002
........................CGAGGA----AAATTAGTACT--AAACTT........................................................................................................................................................................................................................................................................23200.102020000
......................................TAGTACT--AAACTTACTAAGAAACTA-----------------AGC........................................................................................................................................................................................................................................28140.071010000
.........................................TACT--AAACTTACTAAGAAACTA-----------------AGC........................................................................................................................................................................................................................................25140.071010000
...................AT--TCGAGGA----AAATTAGTACT--AAACTTACT.....................................................................................................................................................................................................................................................................29160.061010000
....................T--TCGAGGA----AAATTAGTACT--AAACTTACTA....................................................................................................................................................................................................................................................................29160.061010000
......................................TAGTACT--AAACTTACTAAGAAACTA-----------------...........................................................................................................................................................................................................................................25160.061010000
.........................GAGGA----AAATTAGTACT--AAACTTACT.....................................................................................................................................................................................................................................................................25190.051010000
...................AT--TCGAGGA----AAATTAGTACT--AAACTTA.......................................................................................................................................................................................................................................................................27190.051010000
.............................A----AAATTAGTACT--AAACTTACT.....................................................................................................................................................................................................................................................................21190.051010000
...........................GGA----AAATTAGTACT--AAACTTACT.....................................................................................................................................................................................................................................................................23190.051010000
..........................AGGA----AAATTAGTACT--AAACTTACT.....................................................................................................................................................................................................................................................................24190.051100000
....................T--TCGAGGA----AAATTAGTACT--AAAC..........................................................................................................................................................................................................................................................................23190.051010000
................................................................................................................................ATAGAAAGGTGTGTAAGG-----ATT-AATA..............................................................................................................................................................25200.051010000
...................AT--TCGAGGA----AAATTAGTAC.................................................................................................................................................................................................................................................................................19200.051010000
...........................................................................................................................................................................................AATTAGTGGTGGATATAATATG--------------GT............................................................................................24200.051010000
.................................................................................................................................................................TTTAATAAGAGGAAG---------AGAATTAGTG..........................................................................................................................25200.051010000
........................................................................................................................................................................AGAGGAAG---------AGAATTAGTGGTGGAT....................................................................................................................24200.051100000
...................AT--TCGAGGA----AAATTAGTACT--AAA...........................................................................................................................................................................................................................................................................23200.051010000
.....................................................................................................................................................................ATAAGAGGAAG---------AGAATTAGTGG.........................................................................................................................22200.051010000
...................................................................................................................................................................TAATAAGAGGAAG---------AGAATTAGT...........................................................................................................................22200.051010000
.....................................................................................................................................AAGGTGTGTAAGG-----ATT-AATAA-TTTAAT......................................................................................................................................................27200.051010000
...................................................TTACTAAGAAACTA-----------------AGCATGC....................................................................................................................................................................................................................................21200.051010000
............................................................................................................................................................ATAA-TTTAATAAGAGGAAG---------AG..................................................................................................................................21200.051000001
.............................................................................................................................................................................AAG---------AGAATTAGTGGTGGATATA.................................................................................................................22200.051010000
.......................TCGAGGA----AAATTAGTACT--AAACTTAC......................................................................................................................................................................................................................................................................26200.051010000
........................CGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................22200.051010000
...........................................................................................................TACCACTACAGTTACTAATTAA............................................................................................................................................................................................22200.051010000
..................................................................................................................................................................TTAATAAGAGGAAG---------AGAA................................................................................................................................18200.051010000
dp5
CTATTAG-ACTA-----ACAT--TCGAGGA----AAATTAGTACT--AAACTTACTAAGAAACTA-----------------AGCATGCAATCAAAA----TACAAATACCACTACAGTTACTAATTAATAGAAAGGTGTGTAAGG-----TTT-AATAA-TTTAATAAGAGGAAG---------AGAATTAGTGGTGGATATAATATG--------------GTAGAGGGA-A-TTATAATC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.TATTAG-ACTA-----ACAT--TCGAGGA----AAAT.......................................................................................................................................................................................................................................................................................2520598.50119700897000000300000
..ATTAG-ACTA-----ACAT--TCGAGGA----AAAT.......................................................................................................................................................................................................................................................................................242039.60792079200000000
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAA----........................................................................................................................................................................................................................252024.45489000048900000
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAA----TA......................................................................................................................................................................................................................272013.002600017500008500
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAA----A.......................................................................................................................................................................................................................262012.2024400119026049500
...........................................................................................................TACCACTACAGTTACTAATTAATAG.........................................................................................................................................................................................252011.3022601773300001420
...........................................................................................................TACCACTACAGTTACTAATTAATAGAAA......................................................................................................................................................................................28208.6517301381100002400
.................................................................................................................TACAGTTACTAATTAATAGAAAGG....................................................................................................................................................................................24208.25165098900005710
.TATTAG-ACTA-----ACAT--TCGAGGA----AAATT......................................................................................................................................................................................................................................................................................26207.80156009010013880
.....................................................................................................TACAAATACCACTACAGTTACTAAT...............................................................................................................................................................................................25207.15143006400007630
....................T--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................2466.503903630000000
...........................................................................................................TACCACTACAGTTACTAATTAATAGAA.......................................................................................................................................................................................27206.15123011850000000
...........................................................................................................TACCACTACAGTTACTAATTAATAGA........................................................................................................................................................................................26204.7094083001001000
..ATTAG-ACTA-----ACAT--TCGAGGA----AAA........................................................................................................................................................................................................................................................................................23204.208408400000000
.TATTAG-ACTA-----ACAT--TCGAGGA----AAATTA.....................................................................................................................................................................................................................................................................................27203.557106830000000
...........................................................................................................TACCACTACAGTTACTAATTAATA..........................................................................................................................................................................................24203.4569056000001300
.......................................................TAAGAAACTA-----------------AGCATGCAATC................................................................................................................................................................................................................................21203.406806700100000
...........................................................................................................TACCACTACAGTTACTAATTAATAGAAAG.....................................................................................................................................................................................29203.3567031320000400
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAA----TACA....................................................................................................................................................................................................................29203.3066049170000000
.......................................................TAAGAAACTA-----------------AGCATGCAATCAA..............................................................................................................................................................................................................................23203.006000006005130
............................................................................................................................................................................................................ATATG--------------GTAGAGGGA-A-TTATAATC--------------------------------------------------------------------------23202.9559000047012000
..........TA-----ACAT--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................2942.75110470000000
.....................................................................................................TACAAATACCACTACAGTTACTAA................................................................................................................................................................................................24202.555104300000620
......................................................................................................ACAAATACCACTACAGTTACTAAT...............................................................................................................................................................................................24202.404804700000100
..ATTAG-ACTA-----ACAT--TCGAGGA----AA.........................................................................................................................................................................................................................................................................................22202.254504500000000
..................CAT--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................2652.00100730000000
.TATTAG-ACTA-----ACAT--TCGAGGA----AAA........................................................................................................................................................................................................................................................................................24201.953900000000390
........................................................AAGAAACTA-----------------AGCATGCAATCAAAA----TA......................................................................................................................................................................................................................26201.753503500000000
....................................................TACTAAGAAACTA-----------------AGCATGCAATCAAAA----........................................................................................................................................................................................................................28201.753503500000000
..........TA-----ACAT--TCGAGGA----AAATTAGTAC.................................................................................................................................................................................................................................................................................2341.7570700000000
..........................................................................................................................................................................................................TAATATG--------------GTAGAGGGA-A-TTATAATC--------------------------------------------------------------------------25201.553102800003000
.TATTAG-ACTA-----ACAT--TCGAGGA----AA.........................................................................................................................................................................................................................................................................................23201.302600004090130
........................................................AAGAAACTA-----------------AGCATGCAATCAA..............................................................................................................................................................................................................................22201.252502500000000
.................................................................................................................TACAGTTACTAATTAATAGAA.......................................................................................................................................................................................21201.152302300000000
.....................................................................................................TACAAATACCACTACAGTTACTAATTAA............................................................................................................................................................................................28201.102201120101610
....................................................................................................................................................................................................TGGATATAATATG--------------GTAGAGGGA-A-T.................................................................................24201.102202200000000
.....................................................................................................TACAAATACCACTACAGTTACTA.................................................................................................................................................................................................23201.052101420000320
...........................................................................................................TACCACTACAGTTACTAATTAAT...........................................................................................................................................................................................23201.052102010000000
.....................................................................................................TACAAATACCACTACAGTTACTAATTA.............................................................................................................................................................................................27201.052101800000300
...................AT--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................2551.0050230000000
..........TA-----ACAT--TCGAGGA----AAATTAGTACT--AAAC..........................................................................................................................................................................................................................................................................2841.0040310000000
........................................................AAGAAACTA-----------------AGCATGCAATCAAAA----TAC.....................................................................................................................................................................................................................27201.002001900000100
.......................TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................2361.0060600000000
......................................................................................TGCAATCAAAA----TACAAATACCACTACAG.......................................................................................................................................................................................................28200.95190730000900
.................................................................................................................TACAGTTACTAATTAATAGAAAG.....................................................................................................................................................................................23200.90180910200600
....TAG-ACTA-----ACAT--TCGAGGA----AAAT.......................................................................................................................................................................................................................................................................................22200.901801800000000
............................................................................................................ACCACTACAGTTACTAATTAATAGAAA......................................................................................................................................................................................27200.851701100000600
....................T--TCGAGGA----AAATTAGTACT--AAACTTA.......................................................................................................................................................................................................................................................................2660.8350410000000
.....................................................ACTAAGAAACTA-----------------AGCATGCAATCAAAA----........................................................................................................................................................................................................................27200.801601600000000
..................................................................................................................ACAGTTACTAATTAATAGAAAGG....................................................................................................................................................................................23200.751501400000100
.................................................................................................................TACAGTTACTAATTAATAGAAAGGTG..................................................................................................................................................................................26200.751501010100300
.......................TCGAGGA----AAATTAGTACT--AAACTT........................................................................................................................................................................................................................................................................2460.6740400000000
....................................................TACTAAGAAACTA-----------------AGCATGCAATCAAA.............................................................................................................................................................................................................................27200.651301300000000
.TATTAG-ACTA-----ACAT--TCGAGGA----A..........................................................................................................................................................................................................................................................................................22200.651300002001100
............................................................................................................................................................................................................ATATG--------------GTAGAGGGA-A-TTATAA............................................................................21200.651301200100000
.TATTAG-ACTA-----ACAT--TCGAGGA----AAATTAG....................................................................................................................................................................................................................................................................................28200.601201100000100
.........................................................AGAAACTA-----------------AGCATGCAATCAAAA----........................................................................................................................................................................................................................23200.551101100000000
.........................................................................................................................................TGTGTAAGG-----TTT-AATAA-TTTAATAAGA..................................................................................................................................................2720.5010000000100
.......................TCGAGGA----AAATTAGTACT--AAACTTA.......................................................................................................................................................................................................................................................................2560.5030300000000
....................T--TCGAGGA----AAATTAGTACT--AAACTT........................................................................................................................................................................................................................................................................2560.5030200100000
....................................................TACTAAGAAACTA-----------------AGCATGCAATCA...............................................................................................................................................................................................................................25200.501001000000000
......................................................CTAAGAAACTA-----------------AGCATGCAATCAAAA----A.......................................................................................................................................................................................................................27200.4590900000000
..............................................................................................................CACTACAGTTACTAATTAATAGAAAGG....................................................................................................................................................................................27200.4590350000100
............................................................................................................ACCACTACAGTTACTAATTAATAGAA.......................................................................................................................................................................................26200.4590900000000
..ATTAG-ACTA-----ACAT--TCGAGGA----...........................................................................................................................................................................................................................................................................................20200.4590900000000
............................................................................................................................................................................................................ATATG--------------GTAGAGGGA-A-TTATAAT...........................................................................22200.4590000001800
.....................................................................................................................................................................................................GGATATAATATG--------------GTAGAGGGA-A-TTA...............................................................................25200.4590900000000
.................................................................................................................TACAGTTACTAATTAATAGAAAGGA...................................................................................................................................................................................25200.4590700000200
.................................................................................................................TACAGTTACTAATTAATAGAAAGGT...................................................................................................................................................................................25200.4590000601200
.....................................................................................................TACAAATACCACTACAGTTACTAAA...............................................................................................................................................................................................25200.4590800000100
......................................................CTAAGAAACTA-----------------AGCATGCAATCAA..............................................................................................................................................................................................................................24200.4080800000000
............................................T--AAACTTACTAAGAAACTA-----------------AGCATGCA...................................................................................................................................................................................................................................27200.4080800000000
...................AT--TCGAGGA----AAATTAGTACT--AAAC..........................................................................................................................................................................................................................................................................2450.4020110000000
.................................................................................................................TACAGTTACTAATTAATAGA........................................................................................................................................................................................20200.4080300000500
..................CAT--TCGAGGA----AAATTAGTACT--AAAC..........................................................................................................................................................................................................................................................................2550.4020200000000
..........................................................................................................................................................................................................TAATATG--------------GTAGAGGGA-A-TTA...............................................................................20200.4080800000000
...........A-----ACAT--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................2850.4020110000000
.................ACAT--TCGAGGA----AAATTAGTACT--AAACT.........................................................................................................................................................................................................................................................................2750.4020110000000
...........A-----ACAT--TCGAGGA----AAATTAGTAC.................................................................................................................................................................................................................................................................................2250.4020200000000
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAA----C.......................................................................................................................................................................................................................26200.4080800000000
.......................................................TAAGAAACTA-----------------AGCATGCAAT.................................................................................................................................................................................................................................20200.3570050200000
...................................................................................................................................................................TAATAAGAGGAAG---------AGAATTAGTGG.........................................................................................................................24200.3570000000700
....................T--TCGAGGA----AAATTAGTACT--AAAC..........................................................................................................................................................................................................................................................................2360.3320110000000
................................................................................................................CTACAGTTACTAATTAATAGAAAGG....................................................................................................................................................................................25200.3060400000200
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAA----G.......................................................................................................................................................................................................................26200.3060600000000
.......................................................TAAGAAACTA-----------------AGCATGCAA..................................................................................................................................................................................................................................19200.3060420000000
.............................................................................................................CCACTACAGTTACTAATTAATAGAAAGG....................................................................................................................................................................................28200.3060600000000
.....................................................................................................TACAAATACCACTACAGTTACTAATTAAA...........................................................................................................................................................................................29200.3060600000000
....................T--TCGAGGA----AAATTAGTACT--AAACC.........................................................................................................................................................................................................................................................................2470.2920020000000
...................................................TTACTAAGAAACTA-----------------AGCATGC....................................................................................................................................................................................................................................21200.2550500000000
...................................................TTACTAAGAAACTA-----------------AGCATGCAATC................................................................................................................................................................................................................................25200.2550500000000
.........................................................AGAAACTA-----------------AGCATGCAATCAAAA----TA......................................................................................................................................................................................................................25200.2550500000000
.............................................................................................................................TTAATAGAAAGGTGTGTAAGG-----......................................................................................................................................................................21200.2550300011000
......................................................CTAAGAAACTA-----------------AGCATGCAATCAAAA----........................................................................................................................................................................................................................26200.2550000500000
....TAG-ACTA-----ACAT--TCGAGGA----AAATTAGTAC.................................................................................................................................................................................................................................................................................2840.2510100000000
....................................................................................................................................................................................................TGGATATAATATG--------------GTAGAGG.......................................................................................20200.2550010000040
........................................................AAGAAACTA-----------------AGCATGCAATCAAAA----........................................................................................................................................................................................................................24200.2550050000000
....TAG-ACTA-----ACAT--TCGAGGA----AAATTAGT...................................................................................................................................................................................................................................................................................2640.2510100000000
..........TA-----ACAT--TCGAGGA----AAATTAGTA..................................................................................................................................................................................................................................................................................2240.2510100000000
.........................................................................................................................................................T-AATAA-TTTAATAAGAGGAAG---------AGAAT...............................................................................................................................26200.2550010000400
.........................................................................................................................................................................................................ATAATATG--------------GTAGAGGGA-A-TTA...............................................................................21200.2550400001000
....................................................TACTAAGAAACTA-----------------AGCATGCAATCAA..............................................................................................................................................................................................................................26200.2550000000410
...........................................................................................................TACCACTACAGTTACTAATT..............................................................................................................................................................................................20200.2550500000000
...TTAG-ACTA-----ACAT--TCGAGGA----AA.........................................................................................................................................................................................................................................................................................21200.2550500000000
.............................................................................................................................................................................................TTAGTGGTGGATATAATATG--------------GTAGAGG.......................................................................................27200.2550320000000
............................................................................................................ACCACTACAGTTACTAATTAATAGAAAG.....................................................................................................................................................................................28200.2550500000000
.....................................................................................................TACAAATACCACTACAGT......................................................................................................................................................................................................18200.2550110100200
..............................................................................................................CACTACAGTTACTAATTAATAGAAA......................................................................................................................................................................................25200.2040000000400
.................................................................................................................TACAGTTACTAATTAATAGAAA......................................................................................................................................................................................22200.2040400000000
...............................................................TA-----------------AGCATGCAATCAAAA----TACA....................................................................................................................................................................................................................21200.2040400000000
...........................................................................................TCAAAA----TACAAATACCACTACAGTTAC...................................................................................................................................................................................................27200.2040400000000
........................................................AAGAAACTA-----------------AGCATGCAATCA...............................................................................................................................................................................................................................21200.2040400000000
......................................................................................................................................................................................................GATATAATATG--------------GTAGAGGGA-A-..................................................................................21200.2040400000000
.......................................................TAAGAAACTA-----------------AGCATGCA...................................................................................................................................................................................................................................18200.2040400000000
............................................................................................................ACCACTACAGTTACTAATTAATA..........................................................................................................................................................................................23200.2040400000000
.................................................................................................................TACAGTTACTAATTAATAGAAAGGAA..................................................................................................................................................................................26200.2040400000000
.TATTAG-ACTA-----ACAT--TCGAGG................................................................................................................................................................................................................................................................................................20200.2040000000310
..ATTAG-ACTA-----ACAT--TCGAG.................................................................................................................................................................................................................................................................................................18200.2040400000000
...............................................................TA-----------------AGCATGCAATCAAAA----TACAAATAC...............................................................................................................................................................................................................26200.2040010201000
.....AG-ACTA-----ACAT--TCGAGGA----AAAT.......................................................................................................................................................................................................................................................................................21200.2040000000400
..............................................................................................................................................................................................TAGTGGTGGATATAATATG--------------GTAGAGG.......................................................................................26200.2040300000100
...............................................................TA-----------------AGCATGCAATCAAAA----TACAAATACCAC............................................................................................................................................................................................................29200.2040310000000
.......................TCGAGGA----AAATTAGTACT--AAACA.........................................................................................................................................................................................................................................................................2360.1710100000000
...........A-----ACAT--TCGAGGA----AAATTAGTACT--AAACC.........................................................................................................................................................................................................................................................................2860.1710010000000
....................T--TCGAGGA----AAATTAGTACT--AAACTTAA......................................................................................................................................................................................................................................................................2760.1710010000000
..................CAT--TCGAGGA----AAATTAGTACT--AAACC.........................................................................................................................................................................................................................................................................2660.1710010000000
.................ACAT--TCGAGGA----AAATTAGTACT--AAACC.........................................................................................................................................................................................................................................................................2760.1710010000000
......................................................................................................ACAAATACCACTACAGTTACTAA................................................................................................................................................................................................23200.1530300000000
.................................................................................................................TACAGTTACTAATTAATAGAAAGGTGT.................................................................................................................................................................................27200.1530100200000
..........................................................................................................ATACCACTACAGTTACTAATTAATAGAA.......................................................................................................................................................................................28200.1530300000000
.............................................................................................................................................................................................................TATG--------------GTAGAGGGA-A-TTATA.............................................................................19200.1530000300000
..........................................................................................................ATACCACTACAGTTACTAATTAATAGA........................................................................................................................................................................................27200.1530100000200
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAG----........................................................................................................................................................................................................................25200.1530300000000
.....................................................................................................TACAAATACCACTACAGTTACTAATT..............................................................................................................................................................................................26200.1530000100200
............................................T--AAACTTACTAAGAAACTA-----------------AGCA.......................................................................................................................................................................................................................................23200.1530000000210
CTATTAG-ACTA-----ACAT--TCGAGGA----AAAT.......................................................................................................................................................................................................................................................................................26200.1530000000300
......................................................CTAAGAAACTA-----------------AGCATGCAATCAAA.............................................................................................................................................................................................................................25200.1530000000300
....................................................TACTAAGAAACTA-----------------AGCATGCAAT.................................................................................................................................................................................................................................23200.1530300000000
.......................................................................................................................TACTAATTAATAGAAAGGT...................................................................................................................................................................................19200.1530300000000
..............................................................................................................................................................................................TAGTGGTGGATATAATATG--------------GTAGAG........................................................................................25200.1530000000030
............................................T--AAACTTACTAAGAAACTA-----------------AGCATG.....................................................................................................................................................................................................................................25200.1530000000300
....TAG-ACTA-----ACAT--TCGAGGA----AAATT......................................................................................................................................................................................................................................................................................23200.1530300000000
.............................................................................................................................................................TAA-TTTAATAAGAGGAAG---------AGAAT...............................................................................................................................23200.1530300000000
..............................................................................................................................TAATAGAAAGGTGTGTAAGG-----......................................................................................................................................................................20200.1530100010010
......................................................................................TGCAATCAAAA----TACAAATACCACTAC.........................................................................................................................................................................................................26200.1530100000200
.................................................................................................................TACAGTTACTAATTAATAG.........................................................................................................................................................................................19200.1530200000100
........................................................................................................................................................................................................TATAATATG--------------GTAGAGGGA-A-TTATAA............................................................................25200.1530300000000
.................................................................................................................TACAGTTACTAATTAATAGAAAGT....................................................................................................................................................................................24200.1530300000000
...............................................................................................................ACTACAGTTACTAATTAATAGAAAGG....................................................................................................................................................................................26200.1530300000000
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAA----TAC.....................................................................................................................................................................................................................28200.1530000200010
..............................................................................................................CACTACAGTTACTAATTAATAGAAAG.....................................................................................................................................................................................26200.1530100000200
...................................................................................................................................................................................................GTGGATATAATATG--------------GTAGAGG.......................................................................................21200.1530000000120
.TATTAG-ACTA-----ACAT--TCGAGGA----AAAC.......................................................................................................................................................................................................................................................................................25200.1530300000000
.....................................................ACTAAGAAACTA-----------------AGCATGCAATCAAA.............................................................................................................................................................................................................................26200.1530300000000
.........................................................................................................AATACCACTACAGTTACTAATTAATA..........................................................................................................................................................................................26200.1530300000000
.........................................................................................................................CTAATTAATAGAAAGGTGTGT...............................................................................................................................................................................21200.1530200001000
......................................................................................................ACAAATACCACTACAGTTACTA.................................................................................................................................................................................................22200.1530300000000
.........................................................................................................................................................T-AATAA-TTTAATAAGAGGAAG---------AGAA................................................................................................................................25200.1530300000000
................................................................................................A----TACAAATACCACTACAGTTACTAAT...............................................................................................................................................................................................26200.1530100000200
.................................................................................................................................................................................................TGGTGGATATAATATG--------------GTAGA.........................................................................................21200.1530000000003
...........................................................................................TCAAAA----TACAAATACCACTACAGT......................................................................................................................................................................................................24200.1530200100000
.....................................................................................................TACAAATACCACTACA........................................................................................................................................................................................................16200.1530000000300
..........................................................................................................ATACCACTACAGTTACTAATTAATAG.........................................................................................................................................................................................26200.1530210000000
...........................................................................................................TACCACTACAGTTACTAAT...............................................................................................................................................................................................19200.1020200000000
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAAC----........................................................................................................................................................................................................................25200.1020000000200
......................................................................................................................TTACTAATTAATAGAAAGG....................................................................................................................................................................................19200.1020200000000
......................................................................................................ACAAATACCACTACAGTTACTAATT..............................................................................................................................................................................................25200.1020200000000
.....................................................................................................TACAAATACCACTACAGTTACA..................................................................................................................................................................................................22200.1020200000000
.............................................................................................................CCACTACAGTTACTAATTAATAGA........................................................................................................................................................................................24200.1020200000000
......................................................................................................................................................................................................GATATAATATG--------------GTAGAGGG......................................................................................19200.1020100100000
.............................................................................................................CCACTACAGTTACTAATTAATAG.........................................................................................................................................................................................23200.1020200000000
........................................................AAGAAACTA-----------------AGCATGCAATC................................................................................................................................................................................................................................20200.1020200000000
........................................................AAGAAACTA-----------------AGCATGCAATCAAAA----A.......................................................................................................................................................................................................................25200.1020020000000
......................................................CTAAGAAACTA-----------------AGCATGCAATCAAAA----T.......................................................................................................................................................................................................................27200.1020020000000
...........................................................................................................TACCACTACAGTTACTAATTAATAGAAAC.....................................................................................................................................................................................29200.1020020000000
...........................................................AAACTA-----------------AGCATGCAATCAAAA----A.......................................................................................................................................................................................................................22200.1020200000000
..............................................................................................................CACTACAGTTACTAATTAATAGAAAGGT...................................................................................................................................................................................28200.1020200000000
..........................................ACT--AAACTTACTAAGAAACTA-----------------AGCA.......................................................................................................................................................................................................................................25200.1020200000000
.......................................................................................................CAAATACCACTACAGTTACTAATTAA............................................................................................................................................................................................26200.1020100100000
................................................AACTTACTAAGAAACTA-----------------AGCATGCAA..................................................................................................................................................................................................................................26200.1020200000000
.....................................................................................................TACAAATACCACTACAGTT.....................................................................................................................................................................................................19200.1020200000000
.............................................................................................................................................................TAA-TTTAATAAGAGGAAG---------AGAA................................................................................................................................22200.1020200000000
..............................................................................................................CACTACAGTTACTAATTAATAGAAAGAA...................................................................................................................................................................................28200.1020200000000
........................................................AAGAAACTA-----------------AGCATGCAATCAAAA----TACA....................................................................................................................................................................................................................28200.1020020000000
................................................................................................................CTACAGTTACTAATTAATA..........................................................................................................................................................................................19200.1020200000000
.............................................................................................................CCACTACAGTTACTAATTAATA..........................................................................................................................................................................................22200.1020200000000
..................................................................................................................ACAGTTACTAATTAATAGAA.......................................................................................................................................................................................20200.1020200000000
.............................................................................................................CCACTACAGTTACTAATTAATAGAA.......................................................................................................................................................................................25200.1020200000000
..................................................CTTACTAAGAAACTA-----------------AGCATGCAATC................................................................................................................................................................................................................................26200.1020200000000
.............................................................................................................................................................................................TTAGTGGTGGATATAATATG--------------GTAGA.........................................................................................25200.1020000000200
.............................................................................................................................................................................................TTAGTGGTGGATATAATATG--------------GTAG..........................................................................................24200.1020000000200
..............................................................CTA-----------------AGCATGCAATCAAAA----TACAAATACC..............................................................................................................................................................................................................28200.1020200000000
..............................................................CTA-----------------AGCATGCAATCAAAA----TACAAATA................................................................................................................................................................................................................26200.1020020000000
.......................................................TAAGAAACTA-----------------AGCATGCAATCAAA.............................................................................................................................................................................................................................24200.1020000002000
...............................................................TA-----------------AGCATGCAATCAAAA----TACAAATACCA.............................................................................................................................................................................................................28200.1020200000000
..............................................................................................................................................................................................TAGTGGTGGATATAATATG--------------GTAGA.........................................................................................24200.1020000000020
............................................................................................................................................................................................ATTAGTGGTGGATATAATATG--------------GTAGA.........................................................................................26200.1020000000200
...................................................TTACTAAGAAACTA-----------------AGCATGCAATCA...............................................................................................................................................................................................................................26200.1020000000020
......................................................CTAAGAAACTA-----------------AGCATGCAATCAAAA----TAC.....................................................................................................................................................................................................................29200.1020020000000
.........................................................................................AATCAAAA----TACAAATACCACTACAG.......................................................................................................................................................................................................25200.1020110000000
..........................................................GAAACTA-----------------AGCATGCAATCAAAA----T.......................................................................................................................................................................................................................23200.1020000000200
...............................................................TA-----------------AGCATGCAATCAAAA----TACAA...................................................................................................................................................................................................................22200.1020200000000
......................................................................................................ACAAATACCACTACAGTTACTAATTAAA...........................................................................................................................................................................................28200.1020200000000
......................................................................................................................TTACTAATTAATAGAAAG.....................................................................................................................................................................................18200.1020200000000
...........................................................................................TCAAAA----TACAAATACCACTAC.........................................................................................................................................................................................................21200.1020002000000
.......................................................................................................................TACTAATTAATAGAAAGGTGTGTAAGG-----......................................................................................................................................................................27200.1020200000000
.......................................................................................................................TACTAATTAATAGAAAGGTGT.................................................................................................................................................................................21200.1020000011000
...................................................TTACTAAGAAACTA-----------------AGCATGCAATCAAA.............................................................................................................................................................................................................................28200.1020200000000
droWil2
TGATTAACTACAGCTAATT----ACGAGCTAAATGTGCTAAAATAGAAGTTTTCACAAGGGAAAG-----------------AGAG-GCTTCTGATCTGATTACGGG------------------------------------AAC-----ATT-CATAGCTTTACTAACTGTAGCAGAAGTATGAGGATTAAAAGTTAATT--------TATGGTCCATAAGAACACGTAA-A-TTATTGAT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................TTACTAACTGTAGCAGAAGTATGAGG.................................................................................................................................2611.00100010
...........................................TAGAAGTTTTCACAAGGGAAAG-----------------AGAG-G.....................................................................................................................................................................................................................................27200.05101000
......................................TAAAATAGAAGTTTTCACAAGGGAAAG-----------------A..........................................................................................................................................................................................................................................28200.05101000
..............TAATT----ACGAGCTAAATGTGCT......................................................................................................................................................................................................................................................................................21200.05100100
......................................TAAAATAGAAGTTTTCACAAGGGAA..............................................................................................................................................................................................................................................................25200.05100010
...............................................AGTTTTCACAAGGGAAAG-----------------AGA........................................................................................................................................................................................................................................21200.05100010
.....................................................CACAAGGGAAAG-----------------AGAG-GCTTCTGATC............................................................................................................................................................................................................................26200.05101000
droVir3
GAAAAT--AA-----TAATA-AA--AAAAA----AA-TACAT---------------------------------ACATACTA--------------CAAGTATGTGAAAATATATAATTACTAATAAACATAAGACTATCTGCTT-----ACTAAATAG-TTTGAAAAA----------------------------------------------------------------------------------------------------------------------------------------------GAAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTTGCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGCTGTATATATCGCTGCAGGCCTACGGCCAGGTGTTGTCGTATCCGGTCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTACATTTCGTTGCAGGCCTATGGCCAGGTGGTATCCTATCCGGTCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TATAATAGTATA-----GTAT--ATAAGT---------TTAAATAGAAGGATTATAAAGAAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------CTTGTAGGTAATTTAAA-----ATG-GAGGT-TTTCAAATTTGACAGGGAAGAAAGAGAAA------------TAATATTATACAGACCATT--GTAGTTCGA-ACATAAAATC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................TAGAAGGATTATAAAGAAAACG-----------------AGGA-......................................................................................................................................................................................................................................26200.408080000
..........................................................GAAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------CT..........................................................................................................................................................................................27200.357070000
......................................................TAAAGAAAACG-----------------AGGA-AGAATTAGTA----TGC.....................................................................................................................................................................................................................28200.153030000
........................................................AAGAAAACG-----------------AGGA-AGAATTAGTA----TGC.....................................................................................................................................................................................................................26200.102020000
..........................................ATAGAAGGATTATAAAGAAAACG-----------------AGG........................................................................................................................................................................................................................................26200.102020000
................................................GGATTATAAAGAAAACG-----------------AGGA-AGAAT.................................................................................................................................................................................................................................26200.102020000
...................................................................................................................................TGTAGGTAATTTAAA-----ATG-GAGGT-T...........................................................................................................................................................24200.102020000
...................................................TTATAAAGAAAACG-----------------AGGA-AGAATTAGC.............................................................................................................................................................................................................................27200.051010000
............................................AGAAGGATTATAAAGAAAACG-----------------AGG........................................................................................................................................................................................................................................24200.051010000
.......................................................AAAGAAAACG-----------------AGGA-AGAATTAGTA----TGC.....................................................................................................................................................................................................................27200.051001000
..........................................................GAAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------CC..........................................................................................................................................................................................27200.051010000
........................................................AAGAAAACG-----------------AGGA-AGAATTAGTA----TGCC------------------------............................................................................................................................................................................................27200.051010000
........................................................AAGAAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------............................................................................................................................................................................................27200.051010000
............................................................AAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------CTT.........................................................................................................................................................................................26200.051001000
...........................................................AAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------CTC.........................................................................................................................................................................................27200.051010000
..........................................................GAAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------............................................................................................................................................................................................25200.051010000
.........................................................AGAAAACG-----------------AGGA-AGAATTAGTA----TGC.....................................................................................................................................................................................................................25200.051010000
..................................................................................................................................TTGTAGGTAATTTAAA-----ATG-GAGGT-T...........................................................................................................................................................25200.051100000
............................................................AAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------CT..........................................................................................................................................................................................25200.051010000
.....................................................................................................TGCT------------------------CTTGTAGGTAATTTAAA-----ATG-GAGG..............................................................................................................................................................28200.051100000
........................................................................................................T------------------------CTTGTAGGTAATTTAAA-----ATG-GAGG..............................................................................................................................................................25200.051000010
........................................................................................................T------------------------CTTGTAGGTAATTTAAA-----ATG-GAGGT-C...........................................................................................................................................................27200.051010000
........................................................AAGAAAACG-----------------AGGA-AGAATTAGTA----TGCT------------------------C...........................................................................................................................................................................................28200.051010000
........................................................................................................T------------------------CTTGTAGGTAATTTAAA-----ATG-GAGGT-............................................................................................................................................................26200.051010000
droBip1
CCCAACT-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACCAGCTCTATATATCCCTACAAGCCTACGGCCAAGTGGTATCCTATCCCGTGAASizeHit CountTotal NormTotal
No Reads
droKik1
AACGAGG-AA-----A--CGT--TACGAGA----GTACTCAAATA--AAATTTACTAGAAAAAAA-----------------TATAATTTATTAATA----TATATATATAAGTAAAGTAAAA-----GTAAAAACGCATGCAAAATAAATATA-AAAAA-ATTAAT----ATAAT---------GTAACTAAATATTAATATAATGTA--------------ACTAAATACTA-CGATAAAT--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTATATATCCCTGCAGGCCTATGGCCAGATCATATCCTATCCAGTCAASizeHit CountTotal NormTotal
No Reads
droEle1
CTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTATATATATCGCTGCAGGCCTACGGCCAGGTGATTTCCTATCCGGTAAASizeHit CountTotal NormTotal
No Reads
droRho1
CTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATATATATCCCTGCAGGCCTATGGTCAAGTGATTTCGTATCCGGTGAASizeHit CountTotal NormTotal
No Reads
droBia1
TCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTACATATCCCTGCAGGCCTATGGCCAGGTGATTTCCTACCCGGTCAASizeHit CountTotal NormTotal
No Reads
droTak1
AAAATAT-AG-----T-------TCGAGGA----AA-AA-------------------------------------------A--------------GTAGGA-----------------TCTAATTCTGTGCTCGGAAATTTAAT-----ATT-AATCG-TTTTAGGAGAAGCAG---------AGAGTCAGAATTTGATATAATAGG--------------ATAAAGTACTA-TTATAGTC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTATATATCCCTGCAAGCCTATGGCCAAGTGATTTCCTATCCAGTCAASizeHit CountTotal NormTotal
No Reads
dm3
CAGGAA------------------CGAGGA----AA-TGAATAAA--TTGTAAAATAA----CTATATTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAATTATGTAATAGAAAAGTTAAA-----ATC-GATTG-CTTTAAGAGCGGCAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................TAAA-----ATC-GATTG-CTTTAAGAGCGGC...............................................................................................................................................252023.55471000000000000000000000000000000000000032000000020000001516000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000007201000000000000000000000000000000000000000000000000000000000000000002240000000000000005000000000000000000000000000000000000000000000000092000000000000000000000000000000000000000000
.........................GAGGA----AA-TGAATAAA--TTGTAAAATA....................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120200001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................GAGGA----AA-TGAATAAA--TTGTAAAATAA----C..............................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101020000000000000000000000000000000000000000000000000000000000000001000000000000200000000000000000000000000
................................................................................TTA--------------GTAGGA-----------------TCTAATTATGTAATAGA....................................................................................................................................................................................2636.672000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111100610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TAGGA-----------------TCTAATTATGTAATAGAAAAGT...............................................................................................................................................................................2736.001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112010004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TAAA-----ATC-GATTG-CTTTAAGAGCGG................................................................................................................................................24205.85117000000000000000000000000000000000000190000000000000300210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000450000000000000000000000000000000000000000000000000000000000000090000000010000000000000000000000000000000000
.........................GAGGA----AA-TGAATAAA--TTGTAAAAT.....................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGTTA--------------GTAGGA-----------------TCTAATTATGTAA........................................................................................................................................................................................24204.008000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000720060000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................TAAA-----ATC-GATTG-CTTTAAGAG...................................................................................................................................................21203.907800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805000000000000000000010000000000000000000000000000004000000000000500000053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
..............................................................................TGTTA--------------GTAGGA-----------------TCTAATTATGTAATAGA....................................................................................................................................................................................2833.67110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022013300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TAGAAAAGTTAAA-----ATC-GATTG-CTTT........................................................................................................................................................2553.20160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000200007000001000000000100000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAGGAA------------------CGAGGA----AA-TGAATAAA--TTGTA.........................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................TAATAGAAAAGTTAAA-----ATC-GATTG-C...........................................................................................................................................................2552.40120000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000201000000000002100000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................TTA--------------GTAGGA-----------------TCTAATTATGTAATAGAA...................................................................................................................................................................................2732.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TTAAA-----ATC-GATTG-CTTTAAGAGCGGC...............................................................................................................................................26202.1042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027400100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................GAGGA----AA-TGAATAAA--TTGTAAAATAA----CT.............................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TG-CTTTAAGAGCGGCAG---------AGAGTCAAGA..........................................................................................................................27201.853700000000000000000000000000000000000000000000002000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000260200000
..................................................................................................................................TAATAGAAAAGTTAAA-----ATC-GATTG-CTT.........................................................................................................................................................2751.8090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001030000000000000000000000000000000000000000000000000000000000000000010110010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TA--------------GTAGGA-----------------TCTAATTATGTAATAGA....................................................................................................................................................................................2531.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TAATAGAAAAGTTAAA-----ATC-GATTG-CT..........................................................................................................................................................2651.6080000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100020000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
...................................................................................................................................................................TTAAGAGCGGCAG---------AGAGTCAAGATT........................................................................................................................25201.4028000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000021210000000
..................................................................................................TAGGA-----------------TCTAATTATGTAATAGAAAAG................................................................................................................................................................................2631.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................TTTAAGAGCGGCAG---------AGAGTCAAGAT.........................................................................................................................25201.302600000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000003000003101200001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000
..............................................................................TGTTA--------------GTAGGA-----------------TCTAATTATGTAAT.......................................................................................................................................................................................25201.202400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................................................GATTG-CTTTAAGAGCGGCAG---------AGAGTCA.............................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.............................................................................................................................................TTAAA-----ATC-GATTG-CTTTAAG.....................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
...................................................................TTAAATATTAGTGTTA--------------GTAGGA-----------------TCT..................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................G-CTTTAAGAGCGGCAG---------AGAGTCAAGATT........................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................TTTAAGAGCGGCAG---------AGAGT...............................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AAAGTTAAA-----ATC-GATTG-CTTTAAGAG...................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................ATTAGTGTTA--------------GTAGGA-----------------TCT..................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AA-----ATC-GATTG-CTTTAAGAGCGGCAG---------A...................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGA....28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................A-----ATC-GATTG-CTTTAAGAGCGGC...............................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................TC-GATTG-CTTTAAGAGCGGCAG---------AGA.................................................................................................................................25200.1020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TATATTAAATATTAGTGTTA--------------GTAGG.......................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................AA-----ATC-GATTG-CTTTAAGAGCGG................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACA.....................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGG.....26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.................................................................................................................................................A-----ATC-GATTG-CTTTAAGAGCGGCAG---------....................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------AT........24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..................................................................................................................................TAATAGAAAAGTTAAA-----ATC-GATTG-CA..........................................................................................................................................................26150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AAGAGCGGCAG---------AGAGTCAAGT..........................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................TTTAAGAGCGGCAG---------AGAA................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AAA-----ATC-GATTG-CTTTAAGAG...................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................ATC-GATTG-CTTTAAGAGCGGCAG---------AG..................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TG-CTTTAAGAGCGGCAG---------AGAG................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................ATC-GATTG-CTTTAAGAGCGGCAG---------AGAGT...............................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................A--------------GTAGGA-----------------TCTAATTATGTAAT.......................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TAAA-----ATC-GATTG-CTTTAAGAGCGGCAG---------C...................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGTAAAATAA----CTATATTAAAT....................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTG-CTTTAAGAGCGGCAG---------AGAG................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................AAAGTTAAA-----ATC-GATTG-CTTTAAGA....................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................GAGCGGCAG---------AGAGTCAAGATT........................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................TTG-CTTTAAGAGCGGCAG---------AGA.................................................................................................................................21200.0510000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAATAG-AA-----TAGGA-AC--GAGGA----AA-TTAATATA--ATGCGGAAAAA----CTATGTTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAATTATTTAATAGAAAAGATAAT-----ATC-GATTG-CTTTAATAGCGGCAG---------AGACTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................CAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAA242069.651393000169000070200000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAA....................................................................................................................................................................................................................................................................................23822.881830005009102821430643000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATA..................................................................................................................................................................................................................................................................................25817.75142000100917336250429000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TT......................................................................................................................................................................................................................................................................................21917.44157000000230235145150000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAAT...................................................................................................................................................................................................................................................................................24812.1397002300752415140243000
..........................................................................TTAGTGTTA--------------GTAGGA-----------------TCTAATTATT...........................................................................................................................................................................................25311.33340000001002040000000
...............TAGGA-AC--GAGGA----AA-TTAATATA--ATG...........................................................................................................................................................................................................................................................................2539.002700010015963110000
....TAG-AA-----TAGGA-AC--GAGGA----A..........................................................................................................................................................................................................................................................................................18208.4016800017373160212000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAAA...................................................................................................................................................................................................................................................................................24108.1081000000155710566000
...............TAGGA-AC--GAGGA----AA-TTAA....................................................................................................................................................................................................................................................................................1896.5659000053002004000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-........................................................................................................................................................................................................................................................................................19206.3512700007300113531040000
..............................................................................................................................................TAAT-----ATC-GATTG-CTTTAATAGCGGC...............................................................................................................................................2536.331900000022744000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTA.....................................................................................................................................................................................................................................................................................2295.33480003002106513081000
.....................................................................................................................................TAGAAAAGATAAT-----ATC-GATTG-CTTT........................................................................................................................................................2534.001200000030900000000
.................................................................................................................................................T-----ATC-GATTG-CTTTAATAGCGGCAG---------A...................................................................................................................................2533.671100000014114000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATAT.................................................................................................................................................................................................................................................................................2633.331000000000412030000
...............TAGGA-AC--GAGGA----AA-TTAATATA--AT............................................................................................................................................................................................................................................................................2433.00900000020330010000
.................................................................TGTTAAATATTAGTGTTA--------------GTAGGA-----------------TCTA.................................................................................................................................................................................................28202.65530000000010420010000
.................................................................TGTTAAATATTAGTGTTA--------------GTAGGA-----------------TC...................................................................................................................................................................................................26202.505000000041013203000000
........................................................................................................................................................TC-GATTG-CTTTAATAGCGGCAG---------AGA.................................................................................................................................25202.4048000000192333000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATATA--A.............................................................................................................................................................................................................................................................................2832.33700000011400010000
.......................................................................................................................................................ATC-GATTG-CTTTAATAGC..................................................................................................................................................18202.1543000043000000000000
...............................................................TATGTTAAATATTAGTGTTA--------------GTAGGA-----------------.....................................................................................................................................................................................................26202.10420000001200300000000
..................................................................................................................................TAATAGAAAAGATAAT-----ATC-GATTG-CTT.........................................................................................................................................................2732.00600000030120000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-T.......................................................................................................................................................................................................................................................................................20201.9539000000264221040000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATATA--..............................................................................................................................................................................................................................................................................2731.67500010011200000000
...........................................................................................................................................................GATTG-CTTTAATAGCGGC...............................................................................................................................................18201.6032000000000032000000
...............TAGGA-AC--GAGGA----AA-TTAATATA--ATGC..........................................................................................................................................................................................................................................................................2621.50300000010011000000
...............TAGGA-AC--GAGGA----AA-TT......................................................................................................................................................................................................................................................................................16101.5015000000010014000000
.................................................................TGTTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAA................................................................................................................................................................................................29201.40280000001212040000000
...............................................................TATGTTAAATATTAGTGTTA--------------GTAGGA-----------------TC...................................................................................................................................................................................................28201.3527001000056140001000
...............TAGGA-AC--GAGGA----AA-TTAATA..................................................................................................................................................................................................................................................................................2091.3312000000000111000000
..............................................................................................................................................TAAT-----ATC-GATTG-CTTTAATAGCGG................................................................................................................................................2431.33400000010101010000
..............................................................................................................................................TAAT-----ATC-GATTG-CTTTAATAGCGGT...............................................................................................................................................2531.33400000021100000000
...............TAGGA-AC--GAGGA----AA-TTAATATA--A.............................................................................................................................................................................................................................................................................2331.33400000020200000000
...........................................................................TAGTGTTA--------------GTAGGA-----------------TCTAATTATT...........................................................................................................................................................................................2431.33400000011110000000
....TAG-AA-----TAGGA-AC--GAGGA----...........................................................................................................................................................................................................................................................................................17201.3026000000022319000000
..............................................................................................................................................................................................CAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGG.....19201.0521000000021000000000
....TAG-AA-----TAGGA-AC--GAGG................................................................................................................................................................................................................................................................................................16201.0521000000112017000000
.............................................................................................................................................................................CAG---------AGACTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGA....2811.00100000000100000000
....................................................................................................................................ATAGAAAAGATAAT-----ATC-GATTG-CTTT........................................................................................................................................................2631.00300000010200000000
...............................................................................................................................................................................G---------AGACTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGA....2611.00100000001000000000
..............................................................................................................................................................................AG---------AGACTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGA....2711.00100000000100000000
...............................................................................................................................................................................G---------AGACTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGAT...2711.00100000010000000000
....................................................................................................GGA-----------------TCTAATTATTTAATA......................................................................................................................................................................................1821.00200002000000000000
.................................................................TGTTAAATATTAGTGTTA--------------GTAGGA-----------------.....................................................................................................................................................................................................24201.0020000000081200000000
..................................................................................................TAGGA-----------------TCTAATTATTTAATAGAAAAGA...............................................................................................................................................................................2721.00200010001000000000
........................................................................................................................................................TC-GATTG-CTTTAATAGCGGCAG---------A...................................................................................................................................23200.9519000000050140000000
.................................................................TGTTAAATATTAGTGT............................................................................................................................................................................................................................................16200.9519000000115300000000
..AATAG-AA-----TAGGA-AC--GAGGA----AA-TTAA....................................................................................................................................................................................................................................................................................2580.88700010001003020000
.........................................................A----CTATGTTAAATATTAGTGTTA--------------GTAGGA-----------------.....................................................................................................................................................................................................28200.8517000000512000000000
..............................................................CTATGTTAAATATTAGTGTTA--------------GTAGGA-----------------.....................................................................................................................................................................................................27200.8517000000007100000000
....................................................................TAAATATTAGTGTTA--------------GTAGGA-----------------TCTA.................................................................................................................................................................................................25200.8016000000001600000000
...ATAG-AA-----TAGGA-AC--GAGGA----AA-TTA.....................................................................................................................................................................................................................................................................................2390.78700000010100032000
...................................................................TTAAATATTAGTGTTA--------------GTAGGA-----------------TCTA.................................................................................................................................................................................................26200.7515000000023100000000
..............................................................................................................................................................TG-CTTTAATAGCGGCAG---------AGA.................................................................................................................................20200.701400000007070000000
.................................................................................................................................................T-----ATC-GATTG-CTTTAATAGCGGCAG---------AGA.................................................................................................................................2730.67200000000011000000
...................................................................................................................................AATAGAAAAGATAAT-----ATC-GATTG-CTTT........................................................................................................................................................2730.67200000000101000000
.................................................................................................................................................T-----ATC-GATTG-CTTTAATAGCGGCA..............................................................................................................................................2330.67200000001001000000
..............................................................................................................................................TAAT-----ATC-GATTG-CTTTAAT.....................................................................................................................................................1930.67200000000002000000
..............................................................................................................................................TAAT-----ATC-GATTG-CTTTAATAGCGGCAG---------A...................................................................................................................................2830.67200000002000000000
..................................................................................................................................TAATAGAAAAGATAAT-----ATC-GATTG-CTTT........................................................................................................................................................2830.67200000000110000000
...................................................................TTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAA................................................................................................................................................................................................27200.651300000056002000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATT..................................................................................................................................................................................................................................................................................2580.63500000003110000000
................................................TGCGGAAAAA----CTATGTTAAA.....................................................................................................................................................................................................................................................2020.50100000000100000000
...............TAGGA-AC--GAGGA----AA-TTAATATA--ATGCG.........................................................................................................................................................................................................................................................................2720.50100000001000000000
..............................................................................................................................TATTTAATAGAAAAG................................................................................................................................................................................1520.50100000001000000000
...............TAGGA-AC--GAGGA----AA-TTAATATA--ATGCGG........................................................................................................................................................................................................................................................................2820.50100000001000000000
...........................................TA--ATGCGGAAAAA----CTATGTTAAATA...................................................................................................................................................................................................................................................2520.50100000000100000000
.........................................TATA--ATGCGGAAAAA----CTATGTTAAATA...................................................................................................................................................................................................................................................2720.50100000010000000000
................................................TGCGGAAAAA----CTATGTTAATA....................................................................................................................................................................................................................................................2120.50100000000100000000
.................................................................................TA--------------GTAGGA-----------------TCTAATTATTTAATAGAAAAGA...............................................................................................................................................................................3020.50100000000100000000
..........................................................................TTAGTGTTA--------------GTAGGA-----------------TCTAA................................................................................................................................................................................................20200.45900000000720000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-AA......................................................................................................................................................................................................................................................................................21200.45900000000001080000
....TAG-AA-----TAGGA-AC--GAGGA----AA-A.......................................................................................................................................................................................................................................................................................20200.45900000000011043000
......G-AA-----TAGGA-AC--GAGGA----AA-TT......................................................................................................................................................................................................................................................................................1990.44400000000013000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTT.....................................................................................................................................................................................................................................................................................2290.44400000011020000000
...ATAG-AA-----TAGGA-AC--GAGGA----AA-TT......................................................................................................................................................................................................................................................................................2290.44400000001111000000
.........A-----TAGGA-AC--GAGGA----AA-TT......................................................................................................................................................................................................................................................................................17100.40400000000004000000
....................................................................TAAATATTAGTGTTA--------------GTAGGA-----------------TCTAAT...............................................................................................................................................................................................27200.40800000000800000000
..........................................................................TTAGTGTTA--------------GTAGGA-----------------TCTAATTAT............................................................................................................................................................................................24200.40800000000080000000
...ATAG-AA-----TAGGA-AC--GAGGA----AA-TTAAT...................................................................................................................................................................................................................................................................................2580.38300000003000000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAAC...................................................................................................................................................................................................................................................................................2480.38300000000210000000
.................................................................TGTTAAATATTAGTGTTA--------------GTAGGA-----------------TCA..................................................................................................................................................................................................27200.35700000001040020000
.....................................................................................................................................TAGAAAAGATAAT-----ATC-GATTG-CTTTAATA....................................................................................................................................................2930.33100000000100000000
.....................................................................................................................................TAGAAAAGATAAT-----ATC-GATTG-CTTTAA......................................................................................................................................................2730.33100000000100000000
...........................................................................................................................................AGATAAT-----ATC-GATTG-CTTTAATAGCGG................................................................................................................................................2730.33100000000100000000
..............................................................................................................................................TAAT-----ATC-GATTG-CTTTAATAGCGGAC..............................................................................................................................................2630.33100000000000010000
...................................................................................................................................AATAGAAAAGATAAT-----ATC-GATTG-CTT.........................................................................................................................................................2630.33100000000100000000
...............TAGGA-AC--GAGGA----AA-TTAAT...................................................................................................................................................................................................................................................................................1990.33300000000003000000
.....................................................................................................................................TAGAAAAGATAAT-----ATC-GATTG-CT..........................................................................................................................................................2330.33100000000100000000
.................................................................................................................................................T-----ATC-GATTG-CTTTAATAGCGG................................................................................................................................................2130.33100000001000000000
........AA-----TAGGA-AC--GAGGA----AA-TTAATATA--A.............................................................................................................................................................................................................................................................................2530.33100000000010000000
.............................................................................GTGTTA--------------GTAGGA-----------------TCTAATTATT...........................................................................................................................................................................................2230.33100000001000000000
.......................................................AAA----CTATGTTAAATATTAGTGTTA--------------GT..........................................................................................................................................................................................................................2690.33300000002010000000
...............TAGGA-AC--GAGGA----AA-TTAATATT--..............................................................................................................................................................................................................................................................................2230.33100000010000000000
.........................................................................................................................................AAAGATAAT-----ATC-GATTG-CTTTAAT.....................................................................................................................................................2430.33100000000100000000
...........................................................................................................................................AGATAAT-----ATC-GATTG-CTTT........................................................................................................................................................1930.33100000000001000000
.........................................................................................................................................AAAGATAAT-----ATC-GATTG-CTTTAATAGCGGT...............................................................................................................................................3030.33100000010000000000
.........................................................................................................................................AAAGATAAT-----ATC-GATTG-CTTTAATAGCGGC...............................................................................................................................................3030.33100000001000000000
.................................................................................................................................................T-----ATC-GATTG-CTTTAATAGCG.................................................................................................................................................2030.33100000000010000000
.........A-----TAGGA-AC--GAGGA----AA-TTAATATA--ATG...........................................................................................................................................................................................................................................................................2630.33100000000100000000
...............................................................................................................................................AAT-----ATC-GATTG-CTTTAATAGCGGC...............................................................................................................................................2430.33100010000000000000
...............................................................TATGTTAAATATTAGTGTTA--------------GA..........................................................................................................................................................................................................................22200.30600000000060000000
...............................................................TATGTTAAATATTAGTGTTA--------------GTAGG.......................................................................................................................................................................................................................25200.30600000012030000000
...............TAGGA-AC--GAGGA----AA-T.......................................................................................................................................................................................................................................................................................15200.30600000000015000000
.................................................................................................................................................T-----ATC-GATTG-CTTTAATAGCGGCAG---------G...................................................................................................................................2540.25100000000010000000
...ATAG-AA-----TAGGA-AC--GAGGA----AA-TTAA....................................................................................................................................................................................................................................................................................2480.25200000000001010000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAACT..................................................................................................................................................................................................................................................................................2580.25200000002000000000
.....AG-AA-----TAGGA-AC--GAGGA----AA-TTAA....................................................................................................................................................................................................................................................................................2280.25200000000000020000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TA......................................................................................................................................................................................................................................................................................21200.25500000000002030000
..AATAG-AA-----TAGGA-AC--GAGGA----AA-TTAAT...................................................................................................................................................................................................................................................................................2680.25200000000000020000
..............................................................................................................................................TAAT-----ATC-GATTG-CTTTAATAGCGTT...............................................................................................................................................2540.25100000010000000000
......G-AA-----TAGGA-AC--GAGGA----AA-TTAATA..................................................................................................................................................................................................................................................................................2380.25200000000002000000
..............................................................................................................................................................TG-CTTTAATAGCGGCAG---------AGT.................................................................................................................................20200.25500000001040000000
....................................................................TAAATATTAGTGTTA--------------GTAGGA-----------------TCTAA................................................................................................................................................................................................26200.25500010000004000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAC....................................................................................................................................................................................................................................................................................2390.22200000001100000000
..AATAG-AA-----TAGGA-AC--GAGGA----AA-TTA.....................................................................................................................................................................................................................................................................................2490.22200000000100010000
.......................................................AAA----CTATGTTAAATATTAGTGA............................................................................................................................................................................................................................................2290.22200000002000000000
..........................................................................TTAGTGTTA--------------GTAGGA-----------------TC...................................................................................................................................................................................................17200.20400000040000000000
.................................................................TGTTAAATATTAGTGTTA--------------GTAGGA-----------------T....................................................................................................................................................................................................25200.20400000000000040000
...............................................................TATGTTAAATATTAGTGTTA--------------GTAGGA-----------------T....................................................................................................................................................................................................27200.20400000012100000000
...............................................................TATGTTAAATATTAGTGTTA--------------G...........................................................................................................................................................................................................................21200.20400000000040000000
...............................................................TATGTTAAATATTAGTGTTA--------------............................................................................................................................................................................................................................20200.20400000000040000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAAAC..................................................................................................................................................................................................................................................................................25100.20200000000010010000
................................................................................................................................................AT-----ATC-GATTG-CTTTA.......................................................................................................................................................1550.20100000000001000000
...................................................................TTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAATT..............................................................................................................................................................................................29200.20400000010300000000
........................................................AA----CTATGTTAAATATTAGTGTTA--------------GTAGGA-----------------.....................................................................................................................................................................................................29200.20400000010300000000
...................................................................TTAAATATTAGTGTTA--------------GTAGGA-----------------TCTAAT...............................................................................................................................................................................................28200.20400000010210000000
.......................................................................................................................................................ATC-GATTG-CTTTAATAGCGGCAG---------AGA.................................................................................................................................26200.20400000001030000000
........................................................................TATTAGTGTTA--------------GTAGGA-----------------TCTAATTA.............................................................................................................................................................................................25200.15300000000030000000
......G-AA-----TAGGA-AC--GAGGA----A..........................................................................................................................................................................................................................................................................................16200.15300000001002000000
..........................................................................TTAGTGTTA--------------GTAGGA-----------------TCTA.................................................................................................................................................................................................19200.15300000020010000000
....................................................................TAAATATTAGTGTTA--------------GTAGGA-----------------TCT..................................................................................................................................................................................................24200.15300000000030000000
........................................................................TATTAGTGTTA--------------GTAGGA-----------------TCTA.................................................................................................................................................................................................21200.15300000000000030000
...............................................................TATGTTAAATATTAGTGT............................................................................................................................................................................................................................................18200.15300000000300000000
.................................................................TGTTAAATATTAGTGTTA--------------GTAGGA-----------------TCT..................................................................................................................................................................................................27200.15300000001110000000
.................................................................................................................................................................................................GATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAA21200.15300000003000000000
................AGGA-AC--GAGGA----AA-TTAATATA--ATG...........................................................................................................................................................................................................................................................................2470.14100000000010000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATATC--..............................................................................................................................................................................................................................................................................2780.13100000001000000000
...ATAG-AA-----TAGGA-AC--GAGGA----AA-TTAATA..................................................................................................................................................................................................................................................................................2680.13100000000001000000
....................................................GAAAAA----CTATGTTAAATATTAGTGT............................................................................................................................................................................................................................................2580.13100000000001000000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATC..................................................................................................................................................................................................................................................................................2580.13100000000100000000
.....AG-AA-----TAGGA-AC--GAGGA----AA-TTAACT..................................................................................................................................................................................................................................................................................2480.13100000000000010000
....TAG-AA-----TAGGA-AC--GAGGA----AA-TTAATG..................................................................................................................................................................................................................................................................................2580.13100000000000010000
.AAATAG-AA-----TAGGA-AC--GAGGA----AA-TTAA....................................................................................................................................................................................................................................................................................2680.13100000000000010000
.AAATAG-AA-----TAGGA-AC--GAGGA----AA-TT......................................................................................................................................................................................................................................................................................2490.11100000000000010000
........AA-----TAGGA-AC--GAGGA----AA-TTAA....................................................................................................................................................................................................................................................................................2090.11100000000000001000
.........A-----TAGGA-AC--GAGGA----AA-TTAAT...................................................................................................................................................................................................................................................................................2090.11100000000001000000
.......................................................AAA----CTATGTTAAATATTAGTGTTA--------------G...........................................................................................................................................................................................................................2590.11100000000000010000
AAAATAG-AA-----TAGGA-AC--GAGGA----AA-TTA.....................................................................................................................................................................................................................................................................................2690.11100000000000001000
droSec2
AAAATAG-AA-----TAGGA-AC--GAGGA----AA-TTAATATA--ATGTTAAATAATAAA------TAAATATTAGTGTTA--------------GTAGGA-----------------TCTAATTATGTAATAGAAAAGATAAT-----ATC-GATTA-CTTTAATAGCGGCAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATAGGATAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------ATA.......25205.15103103000
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------GG........24200.2044000
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------..........22200.1020020
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------G.........23200.0511000
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACA.....................................................................................................................18200.0511000
.............................................................................................................................................................................CAG---------AGAGTCAAGATTACAGATA-------------------------------------------------------------------------------------------------------AC........24200.0510010
.....................................................................AAATATTAGTGTTA--------------GTAGGA-----------------TCTAAT...............................................................................................................................................................................................26200.0511000
.................................................................................TA--------------GTAGGA-----------------TCTAATTATGTAATAGAA...................................................................................................................................................................................26200.0510100
..................................................................................................TAGGA-----------------TCTAATTATGTAATAGAAAAG................................................................................................................................................................................26200.0510100
droYak3
AATACAG-TA-----AAGG----ACGAGGA----AA-TATATGT-------------------------------ATATAGTA--------------GTAAGA-----------------TCTAAGAATTCGTTAAGTATGTTAGT-----ATT-GATCG-CTTTAAAAAAGGCAG---------AGAGTCCGAATTAGAGATAATAGGATACAATCT---------ATTATAG-TATTGGTC--------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................TAGT-----ATT-GATCG-CTTTAAAAAAGGCA..............................................................................................................................................2660.17101000000000
................................................................................................................................TTCGTTAAGTATGTTAGT-----ATT-GATCG-CT..........................................................................................................................................................28200.15303000000000
..........................................................................................................................TAAGAATTCGTTAAGTATGTTAGT-----AT....................................................................................................................................................................26200.10200200000000
....CAG-TA-----AAGG----ACGAGGA----AA-TATATGT-------------------------------..................................................................................................................................................................................................................................................25200.05101000000000
...................................................................................................................................GTTAAGTATGTTAGT-----ATT-GATCG-CTTT........................................................................................................................................................27200.05100100000000
droEre2
CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTACATTTCCCTACAGGCCTATGGGCAGGTCATATCCTATCCGGTCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 06/08/2015 at 04:14 PM