ID:

dpe_142

 Coordinate:

scaffold_177:72522-72571 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.5 -37.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BilboLINELOA+
mature
  1. scaffold_190:37495-37518 -
  2. dpe_142  scaffold_177:72548-72571 -
  3. scaffold_86:120911-120934 -
  4. scaffold_219:7092-7115 +
star
  1. scaffold_190:37469-37490 -
  2. scaffold_162:6672-6693 -
  3. scaffold_1079:1599-1620 -
  4. dpe_142  scaffold_177:72522-72543 -
  5. scaffold_1070:7297-7318 +
  6. scaffold_70:201247-201268 +
  7. scaffold_79:62936-62957 +
  8. scaffold_16:311936-311957 -
  9. scaffold_57:306145-306166 +
  10. scaffold_211:16917-16938 +
  11. scaffold_139:108742-108763 -
  12. scaffold_182:38040-38061 -
  13. scaffold_617:7244-7265 +
  14. scaffold_1284:2565-2586 +
  15. scaffold_1664:1344-1365 -
  16. scaffold_4390:1918-1939 +
  17. scaffold_4626:1254-1275 -
  18. scaffold_395:2061-2082 +
  19. scaffold_280:4692-4713 +
  20. scaffold_202:45426-45447 +
  21. scaffold_72:212293-212314 -
  22. scaffold_675:5519-5540 -

Sense Strand Reads

TGGAGTAGCCCTCTGGGTCTATCTCTGTGTGATCGTCGGGTGCTTCGATCTCCGAGGCAGCGTCGTGCTCGACTGGCTTGTCGACAGGACGTGCCCCGGCCGCCGCATCTGACTTGTAGACCTTTACGGTCACAGAGCTGAACCCAAAAT
***********************************((((((((..((....(((.((((.((((.((.(((((......))))))).)))))))).))).))..))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
 V050
head
..................................................TCCGAGGCAGCGTCGTGCTCGACT............................................................................ 24 0 4 12.25 49 49 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGACTG........................................................................... 25 0 4 4.25 17 11 6 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGACTGG.......................................................................... 26 0 4 3.00 12 12 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGA.............................................................................. 22 0 4 1.50 6 6 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGACTGGC......................................................................... 27 0 4 1.50 6 6 0 0 0 0
...........................TGTGATCGTCGGGTGCTTCGA...................................................................................................... 21 0 20 1.00 20 19 0 0 1 0
................................................TCTCCGAGGCAGCGTCGTGCTCGACT............................................................................ 26 0 4 1.00 4 4 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGACA............................................................................ 24 1 4 1.00 4 4 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGACTGGCT........................................................................ 28 0 4 1.00 4 2 0 2 0 0
..............................................................................TGTCGACAGGACGTGCCCCGGCCGC............................................... 25 0 20 0.90 18 18 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGAC............................................................................. 23 0 4 0.75 3 3 0 0 0 0
...................................................CCGAGGCAGCGTCGTGCTCGACT............................................................................ 23 0 4 0.75 3 3 0 0 0 0
................................................TCTCCGAGGCAGCGTCGTGCT................................................................................. 21 0 4 0.75 3 0 3 0 0 0
...................................................CCGAGGCAGCGTCGTGCTCGACTGG.......................................................................... 25 0 4 0.75 3 3 0 0 0 0
................................................TCTCCGAGGCAGCGTCGTGCTCGAC............................................................................. 25 0 4 0.75 3 3 0 0 0 0
...........................TGTGATCGGCGGGTGCTTCGATC.................................................................................................... 23 1 20 0.60 12 12 0 0 0 0
..................................................TCCGAGGCGGCGTCGTGCTCGACT............................................................................ 24 1 4 0.50 2 2 0 0 0 0
................................................TCTCCGAGGCAGCGTCGTGCTC................................................................................ 22 0 4 0.50 2 0 2 0 0 0
................................................TCTCCGAGGCAGCGTCGTGCTCGA.............................................................................. 24 0 4 0.50 2 2 0 0 0 0
.......................................................GGCAGCGTCGTGCTCGACTGGCTTG...................................................................... 25 0 4 0.50 2 2 0 0 0 0
..................................................TCCGAGGCCGCGTCGTGCTCGACT............................................................................ 24 1 4 0.50 2 2 0 0 0 0
................................................TCTCCGAGGCAGCGTCGTGCTCG............................................................................... 23 0 4 0.50 2 1 1 0 0 0
..............................................................................TGTCGACAGGACGTGCCCCGGC.................................................. 22 0 20 0.50 10 9 0 0 1 0
.................TCTATCTCTGTGTGATCGTCGGGT............................................................................................................. 24 0 20 0.35 7 5 0 2 0 0
.............................................CGATCTCCGAGGCAGCGTCGTG................................................................................... 22 0 4 0.25 1 1 0 0 0 0
......................................................AGGCAGCGTCGTGCTCGACTGGCT........................................................................ 24 0 4 0.25 1 0 1 0 0 0
...................................................CCGAGGCAGCGTCGTGCTCGAC............................................................................. 22 0 4 0.25 1 1 0 0 0 0
..............................................GATCTCCGAGGCAGCGTCG..................................................................................... 19 0 4 0.25 1 1 0 0 0 0
.................................................CTCCGAGGCAGCGTCGTGCTC................................................................................ 21 0 4 0.25 1 0 1 0 0 0
..................................................TCCGAGGCGGCGTCGTGCTCGAA............................................................................. 23 2 4 0.25 1 1 0 0 0 0
..................................................TCCGAGGCGGCGTCGTGCTCGACTGG.......................................................................... 26 1 4 0.25 1 1 0 0 0 0
.....................................................GAGGCAGCGTCGTGCTCGACTGG.......................................................................... 23 0 4 0.25 1 1 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGACTGGCA........................................................................ 28 1 4 0.25 1 1 0 0 0 0
..................................................TCAGAGGCAGCGTCGTGCTCGACTT........................................................................... 25 2 4 0.25 1 0 0 0 1 0
...............................................................CGTGCTCGACTGGCTTGTA.................................................................... 19 1 4 0.25 1 1 0 0 0 0
...............................................................CGTGCTCGACTGGCTTGTCGACAGGACG........................................................... 28 0 4 0.25 1 1 0 0 0 0
...................................................CCGAGGCAGCGTCGTGCTCGACTGGCT........................................................................ 27 0 4 0.25 1 1 0 0 0 0
................................................TCTCCGAGGCAGCGTCGTGCTCGACTG........................................................................... 27 0 4 0.25 1 1 0 0 0 0
...............................................................CGTGCTCGACTGGCTTGTCGACAGGACA........................................................... 28 1 4 0.25 1 1 0 0 0 0
..............................................................TCGTGCTCGACTGGCTTGTCGACA................................................................ 24 0 4 0.25 1 1 0 0 0 0
.....................................................GAGGCAGCGTCGTGCTCGACTGGCT........................................................................ 25 0 4 0.25 1 0 0 1 0 0
.........................................................CAGCGTCGTGCTCGACTGGCTTG...................................................................... 23 0 4 0.25 1 1 0 0 0 0
................................................TCTCCGAGGCAGCGTCGTG................................................................................... 19 0 4 0.25 1 1 0 0 0 0
.........................................................CAGCGTCGTGCTCGACTGGCTTGTCGA.................................................................. 27 0 4 0.25 1 1 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCGACTGT.......................................................................... 26 1 4 0.25 1 0 1 0 0 0
..................................................TCCGAGGAAGCGTCGTGCTCGACT............................................................................ 24 1 4 0.25 1 1 0 0 0 0
.................................................CTCCGAGGCAGCGTCGTGCTCGACTG........................................................................... 26 0 4 0.25 1 1 0 0 0 0
.............................................CGATCTCCGAGGCAGCGTCGT.................................................................................... 21 0 4 0.25 1 1 0 0 0 0
..................................................TCCGAGGCAGCTTCGTGCTCGACT............................................................................ 24 1 4 0.25 1 1 0 0 0 0
........................................................GCAGCGTCGTGCTCGACTGGCTTGT..................................................................... 25 0 4 0.25 1 1 0 0 0 0
..............................................GATCTCCGAGGCAGCGTCGTGCTCG............................................................................... 25 0 4 0.25 1 1 0 0 0 0
...................................................CCGAGGCAGCGTCGTGCTCGACTGGC......................................................................... 26 0 4 0.25 1 1 0 0 0 0
..................................................TCCGAGGCTGCGTCGTGCTCGACTG........................................................................... 25 1 4 0.25 1 1 0 0 0 0
......................................................AGGCAGCGTCGTGCTCGACTGGCTT....................................................................... 25 0 4 0.25 1 1 0 0 0 0
..................................................TCCGAGGCAGCGTCGTGCTCG............................................................................... 21 0 4 0.25 1 1 0 0 0 0
..................................................TCCGAGGCGGCGGCGTGCTCGACT............................................................................ 24 2 4 0.25 1 1 0 0 0 0
..............................................................................TGTCGACAGGACGTGCCCCGGCCGCC.............................................. 26 0 13 0.23 3 3 0 0 0 0
.............TGGGTCTATCTCTGTGTGATCGTCG................................................................................................................ 25 0 20 0.20 4 4 0 0 0 0
..............................................................................TGTCGACAGGACGTGCCCCGGCC................................................. 23 0 20 0.20 4 4 0 0 0 0
........................................................GCAGCGTCGTGCTTGACTGGCTT....................................................................... 23 1 5 0.20 1 1 0 0 0 0
................................................TCTCCGAGGCAGCGTCGTT................................................................................... 19 1 6 0.17 1 1 0 0 0 0
..............................................................TCGTGCTCGACTGGCTTGTCGAAAA............................................................... 25 2 6 0.17 1 1 0 0 0 0
...........TCTGGGTCTATCTCTGTGTGATCGTC................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0
............................GTGATCGTGGGGTGCTTCGATC.................................................................................................... 22 1 20 0.10 2 2 0 0 0 0
...........TCTGGGTCTATCTCTGTGTGATCGTCG................................................................................................................ 27 0 20 0.10 2 2 0 0 0 0
...............................................................................GTCGACAGGACGTGCCCCGGCCGC............................................... 24 0 20 0.10 2 2 0 0 0 0
..................................................................GCTCGACTGGCTTGTCGACAGGACG........................................................... 25 0 20 0.10 2 2 0 0 0 0
...................TATCTCTGTGTGATCGTCGGGT............................................................................................................. 22 0 20 0.10 2 2 0 0 0 0
.................................................................TGCTCGACTGGCTTGTCGACA................................................................ 21 0 20 0.10 2 2 0 0 0 0
..............................................................................TGTCGACAGGACGTGCCCCGG................................................... 21 0 20 0.10 2 0 0 0 1 1
.................................................................................CGACAGGACGTGCCCCGGCCGCC.............................................. 23 0 13 0.08 1 1 0 0 0 0
...............................................................................GTCGACAGGACGTGCCCCGGCCGCC.............................................. 25 0 13 0.08 1 1 0 0 0 0
................................................................................TCGACAGGACGTGCCCCGGCCGCC.............................................. 24 0 13 0.08 1 1 0 0 0 0
.................................................................................CGACAGGACGTGCCCCGGCCGCCGC............................................ 25 0 13 0.08 1 1 0 0 0 0
...............................................................................GTCGACAGGACGTGCCCCGGCCGCCG............................................. 26 0 13 0.08 1 1 0 0 0 0
.............................................................................TTGTCGACAGGACGTGCCCCGGCCGC............................................... 26 0 20 0.05 1 1 0 0 0 0
..............................................................................TGTCGACAGGACGTGCCCCGGCCAC............................................... 25 1 20 0.05 1 1 0 0 0 0
..................................................................................................................TGTAGACCTTTACGGTCACAGA.............. 22 0 20 0.05 1 1 0 0 0 0
........................................................................................................................CCTTTACGGTCACAGAGCTGAACCCAAAA. 29 0 20 0.05 1 1 0 0 0 0
...........................TGTGATCGTCGGGTGCTTCGAT..................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
............................GTGATCGTCGGGTGCTTCGA...................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..............................GATCGTCGGGTGCTTCGATC.................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.............................................................................TTGTCGACAGGACGTGCCCCGG................................................... 22 0 20 0.05 1 1 0 0 0 0
....................................................................TCGACTGGCTTGTCGACAGGACG........................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................................................GGCTTGTCGACAGGACGTGA........................................................ 20 1 20 0.05 1 1 0 0 0 0
.........................................................................TGGCTTGTCGACAGGACGTGCCCCGGC.................................................. 27 0 20 0.05 1 1 0 0 0 0
.................TCTATCTCGGTGTGATCGTCGGG.............................................................................................................. 23 1 20 0.05 1 1 0 0 0 0
.........................................................................TGGCTTGTCGACAGGACGTGCCCC..................................................... 24 0 20 0.05 1 1 0 0 0 0
...........................TGTGATCGTCGGGGGCTTCGAT..................................................................................................... 22 1 20 0.05 1 0 1 0 0 0
...........................TGTGATCGTCGGGTGCTTCT....................................................................................................... 20 1 20 0.05 1 0 0 1 0 0
.........................................................................TGGCTTGTCGACAGGACGTGCCCCGG................................................... 26 0 20 0.05 1 1 0 0 0 0
...........................TGTGATCGTCGGGTGCTTCGAG..................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
..................CTATCTCTGTGTGATCGTCGGGT............................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..............................................................................TGTCGACAAGACGTGCCCCGG................................................... 21 1 20 0.05 1 1 0 0 0 0
..............................................................................TGTCGACAGGACGTGCCCC..................................................... 19 0 20 0.05 1 1 0 0 0 0
...........................TGTGATCGTCGGGTGCTTCGATAA................................................................................................... 24 2 20 0.05 1 1 0 0 0 0
...........................TCTGATCGTCGGGTGCTTCGATC.................................................................................................... 23 1 20 0.05 1 0 1 0 0 0
..............................................................................TGTCGACAGGACGTGCGCCGGT.................................................. 22 2 20 0.05 1 0 0 0 1 0
...............................................................................GTCGACAGGACGTGCCCCGGCCG................................................ 23 0 20 0.05 1 1 0 0 0 0
...........................GGTGATCGTCGGGTGCTGCGGTC.................................................................................................... 23 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

ACCTCATCGGGAGACCCAGATAGAGACACACTAGCAGCCCACGAAGCTAGAGGCTCCGTCGCAGCACGAGCTGACCGAACAGCTGTCCTGCACGGGGCCGGCGGCGTAGACTGAACATCTGGAAATGCCAGTGTCTCGACTTGGGTTTTA
***********************************((((((((..((....(((.((((.((((.((.(((((......))))))).)))))))).))).))..))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
.....................................................................................................CGGCGTAGACTGAACATCTGGAA.......................... 23 0 1 2.00 2 0 2 0 0
...........................................................CGCAGCACGAGCTGACCGAACAGCTGT................................................................ 27 0 4 0.50 2 2 0 0 0
........................................................................................................................GGAAATGCCAGTGTCTCGACTTGGGT.... 26 0 20 0.45 9 9 0 0 0
..............CCCAGATAGAGACACACTAGCAG................................................................................................................. 23 0 20 0.40 8 7 0 0 1
...........................................................AACAGCACGAGCTGACCGAACA..................................................................... 22 2 4 0.25 1 1 0 0 0
...........AGACCCAGATAGAGACACACTAGCAG................................................................................................................. 26 0 20 0.25 5 4 0 1 0
............................................................................................................................ATGCCAGTGTCTCGACTTGGGTT... 23 0 20 0.25 5 5 0 0 0
........................................................CGTCGCAGCACGAGCTGACCGA........................................................................ 22 0 4 0.25 1 1 0 0 0
...............................................................GCACGAGCTGACCGAACAGCTGTCC.............................................................. 25 0 4 0.25 1 1 0 0 0
...............CCAGATAGAGACACACTAGCAG................................................................................................................. 22 0 20 0.20 4 4 0 0 0
................................................................CACGAGCTGACCGAACAGCTGTCC.............................................................. 24 0 5 0.20 1 1 0 0 0
..........GAGACCCAGATAGAGACACACTAGCAG................................................................................................................. 27 0 20 0.10 2 2 0 0 0
.............ACCCAGATAGAGACACACTAGCAG................................................................................................................. 24 0 20 0.10 2 0 0 2 0
..............CCCAGATAGAGACACACTAGCA.................................................................................................................. 22 0 20 0.10 2 2 0 0 0
...............................................................................................................................CCAGTGTCTCGACTTGGGTTT.. 21 0 20 0.10 2 2 0 0 0
.............................................................................................................................TGCCAGTGTCTCCACTTGGGTT... 22 1 20 0.05 1 1 0 0 0
............................................................................................................................ATCCCAGTGTCTCGACTTGGGTT... 23 1 20 0.05 1 1 0 0 0
........................................................................................................................GGAAATCCCAGTGTCTCGACTTGGGT.... 26 1 20 0.05 1 1 0 0 0
..................................CAGCCCACGAAGCTAGAGGCTCCG............................................................................................ 24 0 20 0.05 1 1 0 0 0
.........................................................................................................................GAAATGCCAGTGTCTCGACTTGGGT.... 25 0 20 0.05 1 1 0 0 0
...........................................................................................................................AATGCCAGTGTCTCGACTTGGG..... 22 0 20 0.05 1 1 0 0 0
.........GGAGACCCAGATAGAGATACACTAGC................................................................................................................... 26 1 20 0.05 1 0 0 0 1
..............................................................................................................................GCCAGTGTCTCGACTTGGGT.... 20 0 20 0.05 1 1 0 0 0
................................................................................................................................CAGTGTCTCGACTTGGGTT... 19 0 20 0.05 1 1 0 0 0
.........GGAGACCCAGATAGAGACAC......................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.CCTCATCGGGAGACCCAGGT................................................................................................................................. 20 1 20 0.05 1 0 0 1 0
...........TGACCCAGATAGAGACACACTAGCAG................................................................................................................. 26 1 20 0.05 1 0 0 1 0
................CAGATAGAGACACACTAGCAG................................................................................................................. 21 0 20 0.05 1 1 0 0 0
............GACCCAGATAGAGACAGACTAGCAG................................................................................................................. 25 1 20 0.05 1 1 0 0 0
.......................................................................................................................TGGAAATGCCAGTGTCTCGACTTGGGTT... 28 0 20 0.05 1 0 0 1 0
...............CCAGATAGAGACAAACTAGCAG................................................................................................................. 22 1 20 0.05 1 1 0 0 0
.............ACCCAGATAGAGACACACTAGCA.................................................................................................................. 23 0 20 0.05 1 1 0 0 0
.........................................................................................................................GAAATGCCAGTGTCTCAACTTGGGT.... 25 1 20 0.05 1 1 0 0 0
..............................................................................................................................GCCAGTGTCTCGGCTTGGGTT... 21 1 20 0.05 1 1 0 0 0
..........................................................................................................................AAATGCCAGTGTCTCGACTTGGGTT... 25 0 20 0.05 1 1 0 0 0
................................................................................................................................AAGTGTCTCGACTTGGGT.... 18 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_177:72472-72621 - dpe_142 TGGAGTAGCCCTCTG-GGTCTATCTCTGTGTGATCGTCGGGTGCTTCGATCTCCGAGGCAG------------CGTCGTGCTCGACTGGCTTGTCGACAGGACGTGCCC---CGGCCG--CCGCATCTGACTTGTAGACCTTTACGGTCACAGAGCTGAACCCAAAAT
dp5 Unknown_group_37:380-529 + TGGAGTAGCCCTCTG-GGTCTATCTCTGTGTGATCGTCGGGTGCTTCGATCTCCGAGGCAG------------CGTCGTGCTCGACTGGCTTGTCGACAGGACGTGCCT---CGGCCG--CTGCATCCGACTTGTAGACCTTTACGGTCACAGAGCTGAACCCAAAAT
droMoj3 scaffold_6500:17457436-17457490 - CC---------------------------------------------------------------------------------------------------------------AGGAG--TCACGTCTGATTTATAGACCTTAACGACCACCGAGCTGAAGCCAAAAT
droGri2 scaffold_14906:13635921-13636058 - TAG--CATCCGTCTCCAG-----------CTCGTCGTCGGTTGCTTCCATCTCCGGAGAAG------------GATCGTGCTCGACGGGCTTGTCGACAGAATCCGTAC---CGGCCG--CTGCATCCGACTTGTACACCTTTACGATGACTGAGCAGAAGCCGAAGT
droAna3 scaffold_13767:701220-701348 + TGCTGTATACGTCTTCGATAT----------------CTTAGACCTCTACCTCTGAGGCCA------------GCTCCTCCT-----GTCTT-GTGGTAGGGTGTGCTC---CATCAT--TCGAGCCTGACTTATAGACCTTTATTGTAATGGAACTAAAACCGAACT
droBip1 scf7180000395238:3913-4041 + CGTTGTAGCCATCCTTCGTAT----------------TTGAGGCGTCGATCTCGGCGGTCAGTTCCTCTAGGATCTTTTTCGAAGTTGGGT---------------------CGCCCC--CGGAGTCGGACCTGTATACCTTTATGCTAACAGAGCTGAAGCCGAAGT
droEle1 scf7180000490844:10240-10385 + TGGAAAAGCCATCCTCCGACTA-------GTCGTCCCCGGGAGCCTCAAGCTCTTCCAGAC------------AAACCTGCTCGGCTGGGTTACCCGGTCGGCAACCTGCTTC-GCGC--TCGAGTCTCCCTGGTAGACCTTCACTCTGATCGAGCTGAAACCGAAAT
droRho1 scf7180000778245:2135-2272 + TTGAGTAGCCGTCCTCCGGCA-------------GACCAGGGGCCTCCACTTCCTCCGCAA------------GCACCTGCTCAGCTGGGTTGCCGACAGGACTTCCCG---AGGAAT--TAGAATCCCCTTTGTAAATCTTTATATGTATGGCACTGAAACCATAGT
droBia1 scf7180000302283:55280-55417 + TCGATTAGCCGTCCTCCGGCT-------------CACCAAATGCCTTCAATTCCTCAGCAA------------GCACCTGGTCAAATGGGTTGCCGGCAGAGCTTCCAG---GGACAT--TGGAGTCGCCCTTGTAAATTTTTGCATGAATGGCACTGAAACCGAATT
droTak1 scf7180000413093:1981-2117 + TAGAGTAGCCGTCCTCCGGCC-------------CACCAGGCGCCTCCAGTTCCTCGGCAA------------GCACCTGCTCGGCTGGGTTGCCTGCAGGGCTTCCGG---CAGCAT--TCGAGTCGCCTTTATA-ACCTTCATGTAGACGAAACTGAACCCAAAGT
droSim2 node_83424:19-146 + TCGAGTAGCCATCCTCTTTTT----------------CCTAAGCCTCGATCTCGGAGGCAATCTCCGCGATCA----CTCCTCCACCGCCTTCCTGA-----------------TCCT--CCTTGGC-GGCCTTTAGACCTTTATGGGCACTGAGCTGAAGCCGAAGT
droYak3 v2_chr2L_random_001:272526-272660 - TCGAGTAGCCGTCCTCGGTTT----------------CCGATGCCTCGATCTCGGAGGCAATCTCCTCGATCA----CTCCTCCATTGAATTCCTGGTC-------------CGCCTTGGCGGAGTCTGATTTGTAGATCTTTACGGTCACTGAGCTAAACCCGAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGGAGTAGCCCTCTG-GGTCTATCTCTGTGTGATCGTCGGGTGCTTCGATCTCCGAGGCAG------------CGTCGTGCTCGACTGGCTTGTCGACAGGACGTGCCC---CGGCCG--CCGCATCTGACTTGTAGACCTTTACGGTCACAGAGCTGAACCCAAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................TCCGAGGCAG------------CGTCGTGCTCGACT.................................................................................24412.25490490000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTG................................................................................2544.25176110000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGG...............................................................................2643.00120120000
...................................................TCCGAGGCAG------------CGTCGTGCTCGA...................................................................................2241.506060000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGGC..............................................................................2741.506060000
............................TGTGATCGTCGGGTGCTTCGA.......................................................................................................................21201.00200191000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCGACT.................................................................................2641.004040000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACA.................................................................................2441.004040000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGGCT.............................................................................2841.004020002
...........................................................................................TGTCGACAGGACGTGCCC---CGGCCG--C...............................................25200.90180180000
...................................................TCCGAGGCAG------------CGTCGTGCTCGAC..................................................................................2340.753030000
....................................................CCGAGGCAG------------CGTCGTGCTCGACT.................................................................................2340.753030000
.................................................TCTCCGAGGCAG------------CGTCGTGCT......................................................................................2140.753300000
....................................................CCGAGGCAG------------CGTCGTGCTCGACTGG...............................................................................2540.753030000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCGAC..................................................................................2540.753030000
.................................................TCTCCGAGGCAG------------CGTCGTGCTC.....................................................................................2240.502200000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCGA...................................................................................2440.502020000
........................................................GGCAG------------CGTCGTGCTCGACTGGCTTG...........................................................................2540.502020000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCG....................................................................................2340.502110000
...........................................................................................TGTCGACAGGACGTGCCC---CGGC....................................................22200.5010091000
..................TCTATCTCTGTGTGATCGTCGGGT..............................................................................................................................24200.357050002
..............................................CGATCTCCGAGGCAG------------CGTCGTG........................................................................................2240.251010000
.......................................................AGGCAG------------CGTCGTGCTCGACTGGCT.............................................................................2440.251100000
....................................................CCGAGGCAG------------CGTCGTGCTCGAC..................................................................................2240.251010000
...............................................GATCTCCGAGGCAG------------CGTCG..........................................................................................1940.251010000
..................................................CTCCGAGGCAG------------CGTCGTGCTC.....................................................................................2140.251100000
......................................................GAGGCAG------------CGTCGTGCTCGACTGG...............................................................................2340.251010000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGGCA.............................................................................2840.251010000
............................................................................CGTGCTCGACTGGCTTGTA.........................................................................1940.251010000
............................................................................CGTGCTCGACTGGCTTGTCGACAGGACG................................................................2840.251010000
....................................................CCGAGGCAG------------CGTCGTGCTCGACTGGCT.............................................................................2740.251010000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCGACTG................................................................................2740.251010000
............................................................................CGTGCTCGACTGGCTTGTCGACAGGACA................................................................2840.251010000
...........................................................................TCGTGCTCGACTGGCTTGTCGACA.....................................................................2440.251010000
......................................................GAGGCAG------------CGTCGTGCTCGACTGGCT.............................................................................2540.251000001
..........................................................CAG------------CGTCGTGCTCGACTGGCTTG...........................................................................2340.251010000
.................................................TCTCCGAGGCAG------------CGTCGTG........................................................................................1940.251010000
..........................................................CAG------------CGTCGTGCTCGACTGGCTTGTCGA.......................................................................2740.251010000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGT...............................................................................2640.251100000
..................................................CTCCGAGGCAG------------CGTCGTGCTCGACTG................................................................................2640.251010000
..............................................CGATCTCCGAGGCAG------------CGTCGT.........................................................................................2140.251010000
.........................................................GCAG------------CGTCGTGCTCGACTGGCTTGT..........................................................................2540.251010000
...............................................GATCTCCGAGGCAG------------CGTCGTGCTCG....................................................................................2540.251010000
....................................................CCGAGGCAG------------CGTCGTGCTCGACTGGC..............................................................................2640.251010000
.......................................................AGGCAG------------CGTCGTGCTCGACTGGCTT............................................................................2540.251010000
...................................................TCCGAGGCAG------------CGTCGTGCTCG....................................................................................2140.251010000
...........................................................................................TGTCGACAGGACGTGCCC---CGGCCG--CC..............................................26130.233030000
.............TG-GGTCTATCTCTGTGTGATCGTCG.................................................................................................................................25200.204040000
...........................................................................................TGTCGACAGGACGTGCCC---CGGCC...................................................23200.204040000
.................................................TCTCCGAGGCAG------------CGTCGTT........................................................................................1960.171010000
...........TCTG-GGTCTATCTCTGTGTGATCGTC..................................................................................................................................26200.102020000
...........TCTG-GGTCTATCTCTGTGTGATCGTCG.................................................................................................................................27200.102020000
............................................................................................GTCGACAGGACGTGCCC---CGGCCG--C...............................................24200.102020000
...............................................................................GCTCGACTGGCTTGTCGACAGGACG................................................................25200.102020000
....................TATCTCTGTGTGATCGTCGGGT..............................................................................................................................22200.102020000
..............................................................................TGCTCGACTGGCTTGTCGACA.....................................................................21200.102020000
...........................................................................................TGTCGACAGGACGTGCCC---CGG.....................................................21200.102001100
..............................................................................................CGACAGGACGTGCCC---CGGCCG--CC..............................................23130.081010000
............................................................................................GTCGACAGGACGTGCCC---CGGCCG--CC..............................................25130.081010000
.............................................................................................TCGACAGGACGTGCCC---CGGCCG--CC..............................................24130.081010000
..............................................................................................CGACAGGACGTGCCC---CGGCCG--CCGC............................................25130.081010000
............................................................................................GTCGACAGGACGTGCCC---CGGCCG--CCG.............................................26130.081010000
..........................................................................................TTGTCGACAGGACGTGCCC---CGGCCG--C...............................................26200.051010000
....................................................................................................................................TGTAGACCTTTACGGTCACAGA..............22200.051010000
..........................................................................................................................................CCTTTACGGTCACAGAGCTGAACCCAAAA.29200.051010000
............................TGTGATCGTCGGGTGCTTCGAT......................................................................................................................22200.051000001
.............................GTGATCGTCGGGTGCTTCGA.......................................................................................................................20200.051010000
...............................GATCGTCGGGTGCTTCGATC.....................................................................................................................20200.051010000
..........................................................................................TTGTCGACAGGACGTGCCC---CGG.....................................................22200.051010000
.................................................................................TCGACTGGCTTGTCGACAGGACG................................................................23200.051010000
.......................................................................................GGCTTGTCGACAGGACGTGA.............................................................20200.051010000
......................................................................................TGGCTTGTCGACAGGACGTGCCC---CGGC....................................................27200.051010000
......................................................................................TGGCTTGTCGACAGGACGTGCCC---C.......................................................24200.051010000
............................TGTGATCGTCGGGTGCTTCT........................................................................................................................20200.051000001
......................................................................................TGGCTTGTCGACAGGACGTGCCC---CGG.....................................................26200.051010000
............................TGTGATCGTCGGGTGCTTCGAG......................................................................................................................22200.051010000
...................CTATCTCTGTGTGATCGTCGGGT..............................................................................................................................23200.051010000
...........................................................................................TGTCGACAGGACGTGCCC---C.......................................................19200.051010000
............................TGTGATCGTCGGGTGCTTCGATAA....................................................................................................................24200.051010000
............................................................................................GTCGACAGGACGTGCCC---CGGCCG--................................................23200.051010000
dp5
TGGAGTAGCCCTCTG-GGTCTATCTCTGTGTGATCGTCGGGTGCTTCGATCTCCGAGGCAG------------CGTCGTGCTCGACTGGCTTGTCGACAGGACGTGCCT---CGGCCG--CTGCATCCGACTTGTAGACCTTTACGGTCACAGAGCTGAACCCAAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................TGTGATCGTCGGGTGCTTCGATC.....................................................................................................................231334.9245403953010193240
...................................................TCCGAGGCAG------------CGTCGTGCTCGACT.................................................................................24332.339709510100000
..........................TGTGTGATCGTCGGGTGCTTCGATC.....................................................................................................................251320.922720221200033970
.............TG-GGTCTATCTCTGTGTGATCGTCGGG...............................................................................................................................27520.801040700010411180
............................TGTGATCGTCGGGTGCTTCGAT......................................................................................................................221516.60249016310210362710
...........................................................................................TGTCGACAGGACGTGCCT---CGGC....................................................22613.508107330200300
...........................................................................................TGTCGACAGGACGTGCCT---CGG.....................................................21611.006606400000200
...........................................................................................TGTCGACAGGACGTGCCT---CGGCC...................................................2369.675804550800000
.............TG-GGTCTATCTCTGTGTGATCGTCGG................................................................................................................................2658.0040016002027130
...........................................................................................TGTCGACAGGACGTGCCT---CGGCCG--C...............................................2567.004203920000010
............................TGTGATCGTCGGGTGCTTCGA.......................................................................................................................21156.47970580080171310
..................TCTATCTCTGTGTGATCGTCGGG...............................................................................................................................2376.004202910101820
.............TG-GGTCTATCTCTGTGTGATCGTCG.................................................................................................................................2555.8029010001008100
..........................TGTGTGATCGTCGGGTGCTTCGAT......................................................................................................................24135.6974053006031200
.............................................................................................TCGACAGGACGTGCCT---CGGC....................................................2065.503312800004000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTG................................................................................2535.001501200200100
.................................................TCTCCGAGGCAG------------CGTCGTGCTCGACT.................................................................................2635.001501410000000
..............................................................................TGCTCGACTGGCTTGTCGACAGGACG................................................................26204.959909800100000
..............................................................................................CGACAGGACGTGCCT---CGGCCG--................................................2164.672802800000000
..........................TGTGTGATCGTCGGGTGCTTCGA.......................................................................................................................23134.5459038002051310
.............................................................................................TCGACAGGACGTGCCT---CGGCC...................................................2164.502702700000000
...........................................................................................TGTCGACAGGACGTGCCT---CG......................................................2064.502702300400000
.............................................................................................TCGACAGGACGTGCCT---CGGCCG--C...............................................2364.332602320000100
..........................................................................................TTGTCGACAGGACGTGCCT---CGGC....................................................2364.332602310200000
..................TCTATCTCTGTGTGATCGTCGGGT..............................................................................................................................2474.293001400100960
..........................................................................................TTGTCGACAGGACGTGCCT---CGG.....................................................2264.172502200000300
..........................................................................................TTGTCGACAGGACGTGCCT---CGGCC...................................................2464.172512010300000
......................TCTCTGTGTGATCGTCGGGTG.............................................................................................................................21144.005605000111120
..........................................................................................TTGTCGACAGGACGTGCCT---CG......................................................2163.672202000001010
....................TATCTCTGTGTGATCGTCGGG...............................................................................................................................2183.502801910001520
..........................................................................................TTGTCGACAGGACGTGCCT---CGGCCG--C...............................................2663.502101900000200
...............................................................................................GACAGGACGTGCCT---CGGCCG--C...............................................2163.502102100000000
.................GTCTATCTCTGTGTGATCGTC..................................................................................................................................2173.142221300007000
..................TCTATCTCTGTGTGATCGTCGG................................................................................................................................2273.142201400202310
...........................................................................................TGTCGACAGGACGTGCCT---CGGCCG--................................................2463.001801400400000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGGC..............................................................................2733.0090800100000
.............TG-GGTCTATCTCTGTGTGATCGTC..................................................................................................................................2452.801401120100000
.............................GTGATCGTCGGGTGCTTCGATC.....................................................................................................................22132.773603600000000
...............................................................................................GACAGGACGTGCCT---CGGCCG--................................................2062.671601500100000
....................TATCTCTGTGTGATCGTCGGGTG.............................................................................................................................2382.502001200100250
........................TCTGTGTGATCGTCGGGTGCTTCGATC.....................................................................................................................27122.503002100000630
......................TCTCTGTGTGATCGTCGGGTGCTT..........................................................................................................................24132.383102800000120
..............................................................................................CGACAGGACGTGCCT---CGGCC...................................................2062.331401400000000
.......GCCCTCTG-GGTCTATCTCTGT...........................................................................................................................................2162.331401400000000
.........................CTGTGTGATCGTCGGGTGCT...........................................................................................................................20152.203302500007100
.........................................................................................CTTGTCGACAGGACGTGCCT---CGGC....................................................2462.17130510000700
.............................................................................................TCGACAGGACGTGCCT---CGGCCG--................................................2262.171301300000000
...........................GTGTGATCGTCGGGTGCTTCGATC.....................................................................................................................24132.152802700000100
....................TATCTCTGTGTGATCGTCGGGT..............................................................................................................................2282.131701100100320
.......................CTCTGTGTGATCGTCGGGTGC............................................................................................................................21142.072902900000000
..........................TGTGTGATCGTCGGGTGCTT..........................................................................................................................20142.072901900104500
.......................CTCTGTGTGATCGTCGGGTG.............................................................................................................................20142.072902800001000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGG...............................................................................2632.0060600000000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCGAC..................................................................................2532.0060600000000
........CCCTCTG-GGTCTATCTCTGTG..........................................................................................................................................2152.001001000000000
..............................................................................TGCTCGACTGGCTTGTCGACAGG...................................................................23202.004004000000000
............................TGTGATCGTCGGGTGCTTCGATA.....................................................................................................................23151.802701710101610
............................................TTCGATCTCCGAGGCAG------------CGTC...........................................................................................21131.772302100002000
........................TCTGTGTGATCGTCGGGTGCT...........................................................................................................................21141.712412100011000
...........TCTG-GGTCTATCTCTGTGTGATCG....................................................................................................................................2461.671001000000000
...................................................TCCGAGGCAG------------CGTCGTGCTC.....................................................................................2031.6750320000000
....................................................CCGAGGCAG------------CGTCGTGCTCGACT.................................................................................2331.6750500000000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCG....................................................................................2331.6750500000000
.............................................................................................TCGACAGGACGTGCCT---CGG.....................................................1961.671001000000000
..........................TGTGTGATCGTCGGGTGCT...........................................................................................................................19151.672502100103000
.........CCTCTG-GGTCTATCTCTGTG..........................................................................................................................................2051.6080800000000
...........TCTG-GGTCTATCTCTGTGTGATCGT...................................................................................................................................2551.6080200000240
............................................................................................GTCGACAGGACGTGCCT---CGGCCG--C...............................................2461.5090900000000
...........TCTG-GGTCTATCTCTGTGTGATC.....................................................................................................................................2361.5090510000210
..............................................................................TGCTCGACTGGCTTGTCGACAGGAC.................................................................25201.503003000000000
....................TATCTCTGTGTGATCGTCGG................................................................................................................................2081.50120800201010
......................................................................................TGGCTTGTCGACAGGACGTG..............................................................20181.442602000402000
............................TGTGATCGTCGGGTGCTTCG........................................................................................................................20151.402101900200000
...................................................TCCGAGGCAG------------CGTCGTGCTCGA...................................................................................2231.3340400000000
......................................................................................TGGCTTGTCGACAGGACGTGCCT---CGGC....................................................2761.3380800000000
......................................................GAGGCAG------------CGTCGTGCTCGACTGG...............................................................................2331.3340100000300
...................................................TCCGAGGCAG------------CGTCGTGCTCGAC..................................................................................2331.3340310000000
..................TCTATCTCTGTGTGATCGTCGGGTGC............................................................................................................................2671.2990500001210
........................TCTGTGTGATCGTCGGGTGCTTCGA.......................................................................................................................25121.251501200001200
..............................................................................TGCTCGACTGGCTTGTCGACAGGA..................................................................24201.202402400000000
.....TAGCCCTCTG-GGTCTATCTCT.............................................................................................................................................2161.1770700000000
..........................................................................................TTGTCGACAGGACGTGCCT---CGT.....................................................2261.1770700000000
...........................................................................................TGTCGACAGGACGTGCCT---CGGCCG--T...............................................2561.1770600100000
.......GCCCTCTG-GGTCTATCTCTG............................................................................................................................................2061.1770700000000
...........................................................................................TGTCGACAGGACGTGCCT---C.......................................................1961.1770700000000
..........................TGTGTGATCGTCGGGTGCTTCG........................................................................................................................22131.15150900000420
........................TCTGTGTGATCGTCGGGTGCTT..........................................................................................................................22131.151501410000000
..............G-GGTCTATCTCTGTGTGATCGTCGGG...............................................................................................................................2671.1480700000100
....................TATCTCTGTGTGATCGTCGGGTGCTT..........................................................................................................................2681.1390900000000
..............................................................................................CGACAGGACGTGCCT---CGGCCG--C...............................................2261.0060600000000
..................TCTATCTCTGTGTGATCGTCGGGTG.............................................................................................................................2571.0070200000320
.............TG-GGTCTATCTCTGTGTGATC.....................................................................................................................................2161.0060600000000
..........................................................................................TTGTCGACAGGACGTGCCT---CGGCCG--................................................2561.0060600000000
............................................................................................................T---CGGCCG--CTGCATCCGACTTG..................................2121.0020200000000
...........TCTG-GGTCTATCTCTGTGTGATCGTCG.................................................................................................................................2751.0050300000200
...........................................................................................TGTCGACAGGACGTGCCT---CGGCCG--CT..............................................2621.0020110000000
............................................................................................GTCGACAGGACGTGCCT---CGGC....................................................2161.0060600000000
............................................................................CGTGCTCGACTGGCTTGTCGACAGGACG................................................................2831.0030300000000
................................................................................................ACAGGACGTGCCT---CGGCCG--C...............................................2061.0060600000000
...................................................TCCGAGGCAG------------CGTCGTGCTCG....................................................................................2131.0030300000000
............................................................................................................T---CGGCCG--CTGCATCCGACT....................................1921.0020200000000
......................................................................................TGGCTTGTCGACAGGACGTGC.............................................................21180.941701520000000
..............................................................................TGCTCGACTGGCTTGTCGACA.....................................................................21200.901801800000000
..........................................................................................TTGTCGACAGGACGTGCCT---CGGT....................................................2370.8660310000200
......................TCTCTGTGTGATCGTCGGGTGC............................................................................................................................22140.861201100001000
........................TCTGTGTGATCGTCGGGTG.............................................................................................................................19140.86121800002010
......................TCTCTGTGTGATCGTCGGG...............................................................................................................................19140.86120700200210
..............................................CGATCTCCGAGGCAG------------CGTC...........................................................................................19140.861211100000000
........................TCTGTGTGATCGTCGGGTGC............................................................................................................................20140.861211010000000
.............................................TCGATCTCCGAGGCAG------------CGTC...........................................................................................20140.861201200000000
..................TCTATCTCTGTGTGATCGTCG.................................................................................................................................2170.8660500000010
............................TGTGATCGTCGGGTGCTTCGATCA....................................................................................................................24130.85110800111000
..........................TGTGTGATCGTCGGGTGCTTC.........................................................................................................................21130.85110800001200
.........................................................................................CTTGTCGACAGGACGTGCCT---CGGCC...................................................2560.8350500000000
...........................................................................................TGTCGACAGGACGTGCCT---CGT.....................................................2160.8350500000000
............................................................................................GTCGACAGGACGTGCCT---CGG.....................................................2060.8350500000000
........................TCTGTGTGATCGTCGGGTGCTTCG........................................................................................................................24120.83100300000610
.........................................................................................CTTGTCGACAGGACGTGCCT---CGG.....................................................2360.8350500000000
.........CCTCTG-GGTCTATCTCTGTGT.........................................................................................................................................2150.8040400000000
.....TAGCCCTCTG-GGTCTATCTCTGTG..........................................................................................................................................2450.8040400000000
............................TGTGATCGTCGGGTGCTTCGAA......................................................................................................................22150.80120700100400
......................TCTCTGTGTGATCGTCGGGT..............................................................................................................................20140.791101000001000
............................................TTCGATCTCCGAGGCAG------------CGT............................................................................................20130.77100900001000
.........................................................................................................................TGCATCCGACTTGTAGACCTTTACGG.....................26120.7590700000110
.....................ATCTCTGTGTGATCGTCGGG...............................................................................................................................2080.7560600000000
........................TCTGTGTGATCGTCGGGTGCTTCGAT......................................................................................................................26120.7590800100000
....................TATCTCTGTGTGATCGTCGGGTGC............................................................................................................................2480.7560310001100
TGGAGTAGCCCTCTG-GGTCT...................................................................................................................................................20150.731101100000000
...................CTATCTCTGTGTGATCGTCGG................................................................................................................................2170.7150500000000
...........................................CTTCGATCTCCGAGGCAG------------CGT............................................................................................21130.6990900000000
............................TGTGATCGTCGGGTGCTTCGATCTC...................................................................................................................25130.6990100101600
...................................................................................................................................................TCACAGAGCTGAACCCAAAAT21130.6990800000010
.................................................TCTCCGAGGCAG------------CGTCGTG........................................................................................1930.6720200000000
...........................................................................................TGTCGACAGGACGTGCCT---CGGCCC--................................................2460.6740400000000
...........................GTGTGATCGTCGGGTGCTTCG........................................................................................................................21150.67100900001000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTGGCT.............................................................................2830.6720200000000
............CTG-GGTCTATCTCTGTGTGAT......................................................................................................................................2160.6740400000000
.............................................TCGATCTCCGAGGCAG------------CGTCGTGC.......................................................................................2430.6720100000100
............................................................................CGTGCTCGACTGGCTTGTCGACAGG...................................................................2530.6720200000000
............................................................................................GTCGACAGGACGTGCCT---CGGCCG--................................................2360.6740400000000
...........................................................................................TGTCGACAGGACGTGCCT---CGC.....................................................2160.6740400000000
..................................................CTCCGAGGCAG------------CGTCGTGCTCGACT.................................................................................2530.6720200000000
...........TCTG-GGTCTATCTCTGTGTGATCGA...................................................................................................................................2560.6740400000000
........................................................................................GCTTGTCGACAGGACGTGCCT---CGGC....................................................2560.6740400000000
...................................................TCCGAGGCAG------------CGTCGTGCTCGACTT................................................................................2530.6720200000000
.................................................TCTCCGAGGCAG------------CGTCGTGCTA.....................................................................................2230.6720200000000
......................................................................................TGGCTTGTCGACAGGACGTGCCT---CGG.....................................................2660.6740400000000
............................................................................................GTCGACAGGACGTGCCT---CGGCC...................................................2260.6740400000000
...................................................TCCGAGGCAG------------CGTCGTGCTA.....................................................................................2030.6720200000000
.................................................TCTCCGAGGCAG------------CGTCGTGCTCGA...................................................................................2430.6720200000000
................................ATCGTCGGGTGCTTCGATCTC...................................................................................................................21160.631001000000000
..........CTCTG-GGTCTATCTCTGTG..........................................................................................................................................1950.6030300000000
.............TG-GGTCTATCTCTGTGTGATCGTCGGGT..............................................................................................................................2850.6030300000000
TGGAGTAGCCCTCTG-GGTCTA..................................................................................................................................................2150.6030300000000
............................TGTGATCGTCGGGTGCTTCGT.......................................................................................................................21150.6090600001200
TGGAGTAGCCCTCTG-GGTCTAT.................................................................................................................................................2250.6030300000000
.............................................................................................................................TCCGACTTGTAGACCTTTACG......................21200.60120900000300
..............................................................................................................................................TACGGTCACAGAGCTGAACCCAAAAT26120.5870100001320
......................TCTCTGTGTGATCGTCGGGTGCTTC.........................................................................................................................25120.5870610000000
..................TCTATCTCTGTGTGATCGTC..................................................................................................................................2070.5740300001000
...................CTATCTCTGTGTGATCGTCGGG...............................................................................................................................2270.5740400000000
.............................................................................................................................TCCGACTTGTAGACCTTTACGG.....................22200.55110800000300
...........................GTGTGATCGTCGGGTGCTTCGAT......................................................................................................................23150.5380700001000
.........................CTGTGTGATCGTCGGGTGC............................................................................................................................19150.5380800000000
.............................GTGATCGTCGGGTGCTTCGAT......................................................................................................................21150.5380800000000
........................TCTGTGTGATCGTCGGGTGCTTC.........................................................................................................................23120.5060400000110
...........TCTG-GGTCTATCTCTGTGTGA.......................................................................................................................................2160.5030200100000
.............TG-GGTCTATCTCTGTGTGATT.....................................................................................................................................2160.5030000000300
.............TG-GGTCTATCTCTGTGTGAT......................................................................................................................................2060.5030200000010
..............................................................................................CGACAGGACGTGCCT---CGGCCC--................................................2160.5030200100000
.................................................................................................CAGGACGTGCCT---CGGCCG--C...............................................1960.5030300000000
.....................................................................................CTGGCTTGTCGACAGGACGTG..............................................................21180.5090700101000
.........................................................................................CTTGTCGACAGGACGTGCCT---CG......................................................2260.5030300000000
.....................ATCTCTGTGTGATCGTCGGGT..............................................................................................................................2180.5040400000000
...........................................................................................................CT---CGGCCG--CTGCATCCGACTTGTAGA..............................2620.5010100000000
...........................................................................................................................CATCCGACTTGTAGACCTTTACGG.....................24200.50100900000100
...........................................................................................TGTCGACAGGACGTGCCT---CGGCCG--CTG.............................................2720.5010100000000
..............................................................................TGCTCGACTGGCTTGTCGACAGGACGT...............................................................27170.4780800000000
..........................TGTGTGATCGTCGGGTGCTTCGATT.....................................................................................................................25150.4770300000400
...........................GTGTGATCGTCGGGTGCTTC.........................................................................................................................20150.4770400003000
............................................................................................................................ATCCGACTTGTAGACCTTTAC.......................21200.4590200000610
..........................................................................................TTGTCGACAGGACGTGCCT---CGGTA...................................................2470.4330300000000
..................TCTATCTCTGTGTGATCGTCGGGTGCTT..........................................................................................................................2870.4330300000000
.......................CTCTGTGTGATCGTCGGGT..............................................................................................................................19140.4360600000000
...........................................................................................TGTCGACAGGACGTGCCT---CGGT....................................................2270.4330300000000
...................CTATCTCTGTGTGATCGTCGGGT..............................................................................................................................2370.4330200000100
................GGTCTATCTCTGTGTGATCGTC..................................................................................................................................2270.4330300000000
..........................................................................................TTGTCGACAGGACGTGCCT---........................................................1970.4330300000000
..............................................................................TGCTCGACTGGCTTGTCGACAGGACGTG..............................................................28170.4170700000000
..........CTCTG-GGTCTATCTCTGTGTG........................................................................................................................................2150.4020200000000
.GGAGTAGCCCTCTG-GGTCTAT.................................................................................................................................................2150.4020200000000
...........TCTG-GGTCTATCTCTGTGTGATCGTC..................................................................................................................................2650.4020200000000
............................TGTGATCGTCGGGTGCTTCGAAAA....................................................................................................................24150.4060400101000
........CCCTCTG-GGTCTATCTCTGTGTGA.......................................................................................................................................2450.4020200000000
.............................................................................................................................TCCGACTTGTAGACCTTTAC.......................20200.4080300000500
.............TG-GGTCTATCTCTGTGTGATCGT...................................................................................................................................2350.4020200000000
TGGAGTAGCCCTCTG-GGTCTATCTC..............................................................................................................................................2550.4020200000000
.........................CTGTGTGATCGTCGGGTGCTTCGA.......................................................................................................................24130.3850300002000
..........................TGTGTGATCGTCGGGTGCTTCGAA......................................................................................................................24130.3850500000000
....................TATCTCTGTGTGATCGTCG.................................................................................................................................1980.3830100100010
................................................................................CTCGACTGGCTTGTCGACAGGACG................................................................24200.3570700000000
.....TAGCCCTCTG-GGTCTATCTCTG............................................................................................................................................2260.3320200000000
....................................................CCGAGGCAG------------CGTCGTGCTCG....................................................................................2030.3310100000000
...............................................................................................GACAGGACGTGCCT---CGGCC...................................................1960.3320200000000
...........................................................AG------------CGTCGTGCTCGACTGGCTTGTCGAC......................................................................2730.3310100000000
droMoj3
CC---------------------------------------------------------------------------------------------------------------AGGAG--TCACGTCTGATTTATAGACCTTAACGACCACCGAGCTGAAGCCAAAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAG--CATCCGTCTCCAG-----------CTCGTCGTCGGTTGCTTCCATCTCCGGAGAAG------------GATCGTGCTCGACGGGCTTGTCGACAGAATCCGTAC---CGGCCG--CTGCATCCGACTTGTACACCTTTACGATGACTGAGCAGAAGCCGAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TGCTGTATACGTCTTCGATAT----------------CTTAGACCTCTACCTCTGAGGCCA------------GCTCCTCCT-----GTCTT-GTGGTAGGGTGTGCTC---CATCAT--TCGAGCCTGACTTATAGACCTTTATTGTAATGGAACTAAAACCGAACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGTTGTAGCCATCCTTCGTAT----------------TTGAGGCGTCGATCTCGGCGGTCAGTTCCTCTAGGATCTTTTTCGAAGTTGGGT---------------------CGCCCC--CGGAGTCGGACCTGTATACCTTTATGCTAACAGAGCTGAAGCCGAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
TGGAAAAGCCATCCTCCGACTA-------GTCGTCCCCGGGAGCCTCAAGCTCTTCCAGAC------------AAACCTGCTCGGCTGGGTTACCCGGTCGGCAACCTGCTTC-GCGC--TCGAGTCTCCCTGGTAGACCTTCACTCTGATCGAGCTGAAACCGAAATSizeHit CountTotal NormTotal
No Reads
droRho1
TTGAGTAGCCGTCCTCCGGCA-------------GACCAGGGGCCTCCACTTCCTCCGCAA------------GCACCTGCTCAGCTGGGTTGCCGACAGGACTTCCCG---AGGAAT--TAGAATCCCCTTTGTAAATCTTTATATGTATGGCACTGAAACCATAGTSizeHit CountTotal NormTotal
No Reads
droBia1
TCGATTAGCCGTCCTCCGGCT-------------CACCAAATGCCTTCAATTCCTCAGCAA------------GCACCTGGTCAAATGGGTTGCCGGCAGAGCTTCCAG---GGACAT--TGGAGTCGCCCTTGTAAATTTTTGCATGAATGGCACTGAAACCGAATTSizeHit CountTotal NormTotal
No Reads
droTak1
TAGAGTAGCCGTCCTCCGGCC-------------CACCAGGCGCCTCCAGTTCCTCGGCAA------------GCACCTGCTCGGCTGGGTTGCCTGCAGGGCTTCCGG---CAGCAT--TCGAGTCGCCTTTATA-ACCTTCATGTAGACGAAACTGAACCCAAAGTSizeHit CountTotal NormTotal
No Reads
droSim2
TCGAGTAGCCATCCTCTTTTT----------------CCTAAGCCTCGATCTCGGAGGCAATCTCCGCGATCA----CTCCTCCACCGCCTTCCTGA-----------------TCCT--CCTTGGC-GGCCTTTAGACCTTTATGGGCACTGAGCTGAAGCCGAAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droYak3
TCGAGTAGCCGTCCTCGGTTT----------------CCGATGCCTCGATCTCGGAGGCAATCTCCTCGATCA----CTCCTCCATTGAATTCCTGGTC-------------CGCCTTGGCGGAGTCTGATTTGTAGATCTTTACGGTCACTGAGCTAAACCCGAAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................TCGATCA----CTCCTCCATTGAATTCCTGG.......................................................................2727.0014013100000000
..................................................................TCGATCA----CTCCTCCATTGAATTCCTG........................................................................2620.50101000000000
..GAGTAGCCGTCCTCGGTTT----------------CCGATGCC...........................................................................................................................27200.35707000000000
..GAGTAGCCGTCCTCGGTTT----------------CCGATGC............................................................................................................................26200.30605100000000
..GAGTAGCCGTCCTCGGTTT----------------CCGATG.............................................................................................................................25200.25505000000000
..............TCGGTTT----------------CCGATGCCTCGATCTCGGA................................................................................................................26200.25505000000000
...........TCCTCGGTTT----------------CCGATGCCTCGATCT....................................................................................................................25200.20403100000000
..............TCGGTTT----------------CCGATGCCTCGATCTCGGAG...............................................................................................................27200.15301000000002
....................T----------------CCGATGCCTCGATCTCGGAGGCAATC.........................................................................................................27150.13202000000000
TCGAGTAGCCGTCCTCGGTTT----------------CCGA...............................................................................................................................25200.10202000000000
.....TAGCCGTCCTCGGTTT----------------CCGATGCCT..........................................................................................................................25200.10202000000000
..........................................GCCTCGATCTCGGAGGCAATCTCCT.....................................................................................................25140.07101000000000
.....................................CCGATGCCTCGATCTCGGAGGCAATC.........................................................................................................26150.07101000000000
....................T----------------CCGATGCCTCGATCTCGGAGGCA............................................................................................................24170.06101000000000
..................TTT----------------CCGATGCCTCGATCTCGGAGGCA............................................................................................................26170.06101000000000
.....TAGCCGTCCTCGGTTT----------------CCGATGC............................................................................................................................23200.05101000000000
.......GCCGTCCTCGGTTT----------------CCGATGCCTCGA.......................................................................................................................26200.05100000100000
TCGAGTAGCCGTCCTCGGTTT----------------CC.................................................................................................................................23200.05101000000000
............CCTCGGTTT----------------CCGATGCCTCGATCT....................................................................................................................24200.05101000000000
...........TCCTCGGTTT----------------CCGATGCCTCGATCTCGG.................................................................................................................28200.05101000000000
...............CGGTTT----------------CCGATGCCTCGATCT....................................................................................................................21200.05101000000000
......................................CGATGCCTCGATCTCGGA................................................................................................................18200.05110000000000
...............CGGTTT----------------CCGATGCCTCGATCTCGG.................................................................................................................24200.05101000000000

Generated: 05/15/2015 at 02:36 PM